Diff of the two buildlogs: -- --- b1/build.log 2024-12-13 16:34:50.988165108 +0000 +++ b2/build.log 2024-12-13 16:51:52.201652111 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Jan 15 10:41:56 -12 2026 -I: pbuilder-time-stamp: 1768516916 +I: Current time: Sat Dec 14 06:34:57 +14 2024 +I: pbuilder-time-stamp: 1734107697 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -29,51 +29,83 @@ dpkg-source: info: applying do-not-install-potentials.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1128056/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3186850/tmp/hooks/D01_modify_environment starting +debug: Running on infom01-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 13 16:35 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3186850/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3186850/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='508117b27e204bbf94a64e268de0b149' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1128056' - PS1='# ' - PS2='> ' + INVOCATION_ID=a695df81959e42399272f599b9ede88e + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3186850 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.UZ1wfsBI/pbuilderrc_SkCn --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.UZ1wfsBI/b1 --logfile b1/build.log lammps_20240207+dfsg-2.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.UZ1wfsBI/pbuilderrc_QQvV --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.UZ1wfsBI/b2 --logfile b2/build.log lammps_20240207+dfsg-2.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' I: uname -a - Linux infom02-amd64 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-28-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1128056/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3186850/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -987,7 +1019,7 @@ Get: 794 http://deb.debian.org/debian unstable/main amd64 texlive-pictures all 2024.20241115-1 [17.0 MB] Get: 795 http://deb.debian.org/debian unstable/main amd64 texlive-latex-extra all 2024.20241115-1 [24.6 MB] Get: 796 http://deb.debian.org/debian unstable/main amd64 voro++-dev amd64 0.5+revert-to-0.4.6+dfsg1-1 [155 kB] -Fetched 775 MB in 9s (84.3 MB/s) +Fetched 775 MB in 14s (56.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libapparmor1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19965 files and directories currently installed.) @@ -3528,8 +3560,8 @@ Setting up tzdata (2024b-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Thu Jan 15 22:47:42 UTC 2026. -Universal Time is now: Thu Jan 15 22:47:42 UTC 2026. +Local time is now: Fri Dec 13 16:43:54 UTC 2024. +Universal Time is now: Fri Dec 13 16:43:54 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libcap2-bin (1:2.66-5+b1) ... @@ -4461,7 +4493,11 @@ fakeroot is already the newest version (1.36-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/reproducible-path/lammps-20240207+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../lammps_20240207+dfsg-2_source.changes +I: user script /srv/workspace/pbuilder/3186850/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/3186850/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/lammps-20240207+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../lammps_20240207+dfsg-2_source.changes dpkg-buildpackage: info: source package lammps dpkg-buildpackage: info: source version 20240207+dfsg-2 dpkg-buildpackage: info: source distribution unstable @@ -4729,8 +4765,8 @@ -- Using double precision FFTs -- Using threaded FFTs -- Using builtin distributed FFT algorithms --- Configuring done (9.6s) --- Generating done (0.3s) +-- Configuring done (5.7s) +-- Generating done (0.2s) -- Build files have been written to: /build/reproducible-path/lammps-20240207+dfsg/debian/build make[1]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg' dh_auto_build -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build @@ -4745,99 +4781,99 @@ make -f CMakeFiles/poems.dir/build.make CMakeFiles/poems.dir/depend make -f CMakeFiles/atc.dir/build.make CMakeFiles/atc.dir/depend make -f CMakeFiles/awpmd.dir/build.make CMakeFiles/awpmd.dir/depend -make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/fmt_format.h.dir/DependInfo.cmake "--color=" make -f CMakeFiles/h5md.dir/build.make CMakeFiles/h5md.dir/depend make -f CMakeFiles/gitversion.dir/build.make CMakeFiles/gitversion.dir/depend +make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/fmt_format.h.dir/DependInfo.cmake "--color=" make -f CMakeFiles/angle.h.dir/build.make CMakeFiles/angle.h.dir/depend make -f CMakeFiles/atom.h.dir/build.make CMakeFiles/atom.h.dir/depend make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/h5md.dir/DependInfo.cmake "--color=" make -f CMakeFiles/bond.h.dir/build.make CMakeFiles/bond.h.dir/depend +make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/awpmd.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build 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'/build/reproducible-path/lammps-20240207+dfsg/debian/build' +cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/poems.dir/DependInfo.cmake "--color=" +make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build 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CMakeFiles/fmt_format.h.dir/build.make CMakeFiles/fmt_format.h.dir/build -make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +make -f CMakeFiles/fmt_format.h.dir/build.make CMakeFiles/fmt_format.h.dir/build make -f CMakeFiles/atom.h.dir/build.make CMakeFiles/atom.h.dir/build make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +make -f CMakeFiles/awpmd.dir/build.make CMakeFiles/awpmd.dir/build make -f CMakeFiles/poems.dir/build.make CMakeFiles/poems.dir/build make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +make -f CMakeFiles/h5md.dir/build.make CMakeFiles/h5md.dir/build make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make -f CMakeFiles/angle.h.dir/build.make CMakeFiles/angle.h.dir/build make -f CMakeFiles/gitversion.dir/build.make CMakeFiles/gitversion.dir/build +make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make -f CMakeFiles/atc.dir/build.make CMakeFiles/atc.dir/build -make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +make -f CMakeFiles/angle.h.dir/build.make CMakeFiles/angle.h.dir/build make -f CMakeFiles/bond.h.dir/build.make CMakeFiles/bond.h.dir/build make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +make -f CMakeFiles/citeme.h.dir/build.make CMakeFiles/citeme.h.dir/build make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -/usr/bin/cmake -DLAMMPS_DIR="/build/reproducible-path/lammps-20240207+dfsg" -DGIT_EXECUTABLE="/usr/bin/git" -DGIT_FOUND="TRUE" -DLAMMPS_STYLE_HEADERS_DIR="/build/reproducible-path/lammps-20240207+dfsg/debian/build/styles" -P /build/reproducible-path/lammps-20240207+dfsg/cmake/Modules/generate_lmpgitversion.cmake make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make -f CMakeFiles/citeme.h.dir/build.make CMakeFiles/citeme.h.dir/build +/usr/bin/cmake -DLAMMPS_DIR="/build/reproducible-path/lammps-20240207+dfsg" -DGIT_EXECUTABLE="/usr/bin/git" -DGIT_FOUND="TRUE" -DLAMMPS_STYLE_HEADERS_DIR="/build/reproducible-path/lammps-20240207+dfsg/debian/build/styles" -P /build/reproducible-path/lammps-20240207+dfsg/cmake/Modules/generate_lmpgitversion.cmake make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make -f CMakeFiles/comm.h.dir/build.make CMakeFiles/comm.h.dir/build make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +make -f CMakeFiles/atc.dir/build.make CMakeFiles/atc.dir/build make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -make -f CMakeFiles/command.h.dir/build.make CMakeFiles/command.h.dir/build make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -[ 0%] Building CXX object CMakeFiles/awpmd.dir/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/src/logexc.cpp.o -[ 0%] Generating includes/lammps/atom.h +[ 0%] Generating includes/lammps/angle.h +[ 0%] Generating includes/lammps/command.h [ 0%] Generating includes/lammps/fmt/format.h -/usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/awpmd.dir/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/src/logexc.cpp.o -MF CMakeFiles/awpmd.dir/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/src/logexc.cpp.o.d -o CMakeFiles/awpmd.dir/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/src/logexc.cpp.o -c 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/build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/fmt/format.h /usr/bin/cc -I/build/reproducible-path/lammps-20240207+dfsg/lib/h5md/include -I/usr/include/hdf5/serial -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/h5md.dir/build/reproducible-path/lammps-20240207+dfsg/lib/h5md/src/ch5md.c.o -MF CMakeFiles/h5md.dir/build/reproducible-path/lammps-20240207+dfsg/lib/h5md/src/ch5md.c.o.d -o CMakeFiles/h5md.dir/build/reproducible-path/lammps-20240207+dfsg/lib/h5md/src/ch5md.c.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/h5md/src/ch5md.c -/usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/body.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/body.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/body.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/body.cpp -/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/atom.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/atom.h -[ 0%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Coupling.cpp.o -[ 0%] Generating includes/lammps/angle.h /usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/bond.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/bond.h -[ 0%] Generating includes/lammps/citeme.h +/usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/include -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/awpmd.dir/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/src/logexc.cpp.o -MF CMakeFiles/awpmd.dir/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/src/logexc.cpp.o.d -o CMakeFiles/awpmd.dir/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/src/logexc.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/src/logexc.cpp +[ 0%] Generating includes/lammps/atom.h +[ 0%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/body.cpp.o -- Git Directory: /build/reproducible-path/lammps-20240207+dfsg/.git -- Generating lmpgitversion.h... -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Coupling.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Coupling.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Coupling.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Coupling.cpp -/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/citeme.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/citeme.h -/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/angle.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/angle.h [ 0%] Generating includes/lammps/comm.h +/usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/body.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/body.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/body.cpp.o -c 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-DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Coupling.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Coupling.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Coupling.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Coupling.cpp make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' @@ -4845,584 +4881,579 @@ make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -[ 0%] Built target angle.h make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -[ 0%] Built target fmt_format.h -[ 0%] Built target citeme.h +[ 0%] Built target angle.h +[ 0%] Built target command.h [ 0%] Built target bond.h +[ 0%] Built target fmt_format.h make -f CMakeFiles/compute.h.dir/build.make CMakeFiles/compute.h.dir/depend -make -f CMakeFiles/dihedral.h.dir/build.make CMakeFiles/dihedral.h.dir/depend make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' cd 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CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/colmatrix.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/colmatrix.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/colmatrix.cpp -[ 2%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/eulerparameters.cpp.o -/usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/eulerparameters.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/eulerparameters.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/eulerparameters.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/eulerparameters.cpp -[ 2%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/fastmatrixops.cpp.o -/usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/fastmatrixops.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/fastmatrixops.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/fastmatrixops.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/fastmatrixops.cpp -In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.h:5, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Coupling.h:10, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingEnergy.h:5, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingEnergy.cpp:2: -/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': -/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] - 117 | return (*_baseV)(i); - | ~~~~~~~~~^~~ -In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.h:5, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Coupling.h:10, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingMomentum.h:7, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingMomentum.cpp:2: -/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': -/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] - 117 | return (*_baseV)(i); - | ~~~~~~~~~^~~ -In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.h:5, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Coupling.h:10, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingMomentumEnergy.h:5, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingMomentumEnergy.cpp:2: -/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': -/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] - 117 | return (*_baseV)(i); - | ~~~~~~~~~^~~ -In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.h:5, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Coupling.h:10, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Coupling.cpp:2: -/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': -/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] - 117 | return (*_baseV)(i); - | ~~~~~~~~~^~~ -[ 2%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/fixedpoint.cpp.o -/usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/fixedpoint.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/fixedpoint.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/fixedpoint.cpp.o -c 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-/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/AtomToMoleculeTransfer.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/AtomToMoleculeTransfer.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/AtomToMoleculeTransfer.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/AtomToMoleculeTransfer.cpp -[ 3%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/inertialframe.cpp.o -/usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/inertialframe.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/inertialframe.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/inertialframe.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/inertialframe.cpp -In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.h:5, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Transfer.h:6, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Transfer.cpp:2: -/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': -/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] - 117 | return (*_baseV)(i); - | ~~~~~~~~~^~~ make -f CMakeFiles/fix.h.dir/build.make CMakeFiles/fix.h.dir/depend make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build 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directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -[ 5%] Generating includes/lammps/lattice.h -/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/lattice.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/lattice.h -make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -[ 5%] Built target lattice.h make -f CMakeFiles/library.h.dir/build.make CMakeFiles/library.h.dir/depend make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build 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cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/lmptype.h.dir/DependInfo.cmake "--color=" +[ 2%] Built target lattice.h +/usr/bin/cmake -E cmake_link_script CMakeFiles/h5md.dir/link.txt --verbose=1 +make -f CMakeFiles/memory.h.dir/build.make CMakeFiles/memory.h.dir/depend make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' +[ 2%] Generating includes/lammps/library.h make -f CMakeFiles/lmppython.h.dir/build.make CMakeFiles/lmppython.h.dir/build make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -[ 5%] Generating includes/lammps/lmppython.h -/usr/bin/cmake -E copy_if_different /build/reproducible-path/lammps-20240207+dfsg/src/lmppython.h /build/reproducible-path/lammps-20240207+dfsg/debian/build/includes/lammps/lmppython.h -make[3]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -[ 5%] Built target lmppython.h -[ 5%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CbPotential.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CbPotential.cpp.o -MF 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-I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/norm.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/norm.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/norm.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/norm.cpp -[ 5%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ChargeRegulator.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ChargeRegulator.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ChargeRegulator.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ChargeRegulator.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ChargeRegulator.cpp -[ 5%] Building CXX object CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/onbody.cpp.o -/usr/bin/c++ -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/vect3.cpp.o -MF CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/vect3.cpp.o.d -o CMakeFiles/poems.dir/build/reproducible-path/lammps-20240207+dfsg/lib/poems/vect3.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/poems/vect3.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.h:6, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Element.cpp:3: + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.h:5, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Coupling.h:10, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingEnergy.h:5, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingEnergy.cpp:2: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ -[ 9%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldManager.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT 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/build/reproducible-path/lammps-20240207+dfsg/lib/poems/vect6.cpp +In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.h:5, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Coupling.h:10, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingMomentum.h:7, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_CouplingMomentum.cpp:2: +/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': +/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] + 117 | return (*_baseV)(i); + | ~~~~~~~~~^~~ +[ 8%] Building CXX object 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-Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CBLattice.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CBLattice.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CBLattice.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CBLattice.cpp +[ 9%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CauchyBorn.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CauchyBorn.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CauchyBorn.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CauchyBorn.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CauchyBorn.cpp +In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CBLattice.h:7, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CBLattice.cpp:1: +/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': +/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] + 117 | return (*_baseV)(i); + | ~~~~~~~~~^~~ +In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CauchyBorn.h:4, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CauchyBorn.cpp:1: +/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': +/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] + 117 | return (*_baseV)(i); + | ~~~~~~~~~^~~ +[ 9%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CbPotential.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CbPotential.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CbPotential.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CbPotential.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CbPotential.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModel.h:8, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelElectrostatic.h:7, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelElectrostatic.cpp:2: + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Method.h:5, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Transfer.h:6, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_Transfer.cpp:2: +/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': +/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] + 117 | return (*_baseV)(i); + | ~~~~~~~~~^~~ +[ 9%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ChargeRegulator.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ChargeRegulator.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ChargeRegulator.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ChargeRegulator.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ChargeRegulator.cpp +[ 9%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ConcentrationRegulator.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ConcentrationRegulator.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ConcentrationRegulator.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ConcentrationRegulator.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ConcentrationRegulator.cpp +[ 9%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElasticTimeIntegrator.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElasticTimeIntegrator.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElasticTimeIntegrator.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElasticTimeIntegrator.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElasticTimeIntegrator.cpp +[ 9%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronChargeDensity.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG 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/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/AtomicRegulator.h:6, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/AtomicRegulator.cpp:2: +/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': +/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] + 117 | return (*_baseV)(i); + | ~~~~~~~~~^~~ +[ 9%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronDragPower.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g 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/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronFlux.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronFlux.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronFlux.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronFlux.cpp +[ 9%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronHeatCapacity.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem 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/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronFlux.cpp:1: +/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': +/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] + 117 | return (*_baseV)(i); + | ~~~~~~~~~^~~ +[ 9%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ElectronHeatFlux.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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/usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldEulerIntegrator.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldEulerIntegrator.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldEulerIntegrator.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldEulerIntegrator.cpp +In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.h:6, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Element.cpp:3: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); @@ -5439,15 +5470,42 @@ | ~~~~~~~~~^~~ In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Element.h:8, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.cpp:2: + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Interpolate.cpp:3: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ +[ 10%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldManager.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldManager.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldManager.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldManager.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FieldManager.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Engine.h:9, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Engine.cpp:1: + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModel.h:8, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelTwoTemperature.h:6, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelTwoTemperature.cpp:2: +/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': +/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] + 117 | return (*_baseV)(i); + | 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10%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FundamentalAtomicQuantity.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FundamentalAtomicQuantity.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FundamentalAtomicQuantity.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/FundamentalAtomicQuantity.cpp.o -c 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CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ImplicitSolveOperator.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ImplicitSolveOperator.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ImplicitSolveOperator.cpp +In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModel.h:8, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelElectrostatic.h:7, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ExtrinsicModelElectrostatic.cpp:2: +/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': +/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] + 117 | return (*_baseV)(i); + | ~~~~~~~~~^~~ +In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Element.h:8, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Mesh.cpp:2: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); @@ -5459,32 +5517,22 @@ /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ -make -f CMakeFiles/utils.h.dir/build.make CMakeFiles/utils.h.dir/depend -make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/cmake /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build /build/reproducible-path/lammps-20240207+dfsg/debian/build/CMakeFiles/utils.h.dir/DependInfo.cmake "--color=" -[ 10%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/InterscaleOperators.cpp.o +In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Engine.h:9, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/FE_Engine.cpp:1: +/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': +/build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] + 117 | return (*_baseV)(i); + | ~~~~~~~~~^~~ +[ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/InterscaleOperators.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/InterscaleOperators.cpp.o -MF 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CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KinetoThermostat.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KinetoThermostat.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/KinetoThermostat.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ImplicitSolveOperator.h:6, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ImplicitSolveOperator.cpp:2: @@ -5492,18 +5540,6 @@ /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ -make -f CMakeFiles/fmt_core.h.dir/build.make CMakeFiles/fmt_core.h.dir/depend -make[3]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg/debian/build' -cd /build/reproducible-path/lammps-20240207+dfsg/debian/build && /usr/bin/cmake -E cmake_depends "Unix 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CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KinetoThermostat.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KinetoThermostat.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KinetoThermostat.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/KinetoThermostat.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/KinetoThermostat.cpp [ 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Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/LammpsInterface.cpp.o @@ -5512,12 +5548,6 @@ /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/LinearSolver.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/LinearSolver.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/LinearSolver.cpp.o -c 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/build/reproducible-path/lammps-20240207+dfsg/lib/atc/MeshReader.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/AtomicRegulator.h:6, @@ -5527,10 +5557,8 @@ /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ -[ 12%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/MoleculeSet.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. 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null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ +[ 11%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Matrix.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Matrix.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Matrix.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Matrix.cpp.o -c 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CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PaqAtcUtility.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PaqAtcUtility.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PaqAtcUtility.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PaqAtcUtility.cpp -[ 12%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ParDiagonalMatrix.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 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-DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ParDiagonalMatrix.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ParDiagonalMatrix.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ParDiagonalMatrix.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ParDiagonalMatrix.cpp [ 12%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ParSparseMatrix.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ParSparseMatrix.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ParSparseMatrix.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ParSparseMatrix.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ParSparseMatrix.cpp [ 12%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerAtomQuantityLibrary.cpp.o @@ -5578,6 +5614,10 @@ /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ThermalTimeIntegrator.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ThermalTimeIntegrator.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ThermalTimeIntegrator.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ThermalTimeIntegrator.cpp [ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Thermostat.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Thermostat.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Thermostat.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Thermostat.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Thermostat.cpp +[ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TimeFilter.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TimeFilter.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TimeFilter.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TimeFilter.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/TimeFilter.cpp +[ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TimeIntegrator.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TimeIntegrator.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TimeIntegrator.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TimeIntegrator.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/TimeIntegrator.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PhysicsModel.h:8, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PhysicsModel.cpp:1: @@ -5585,23 +5625,21 @@ /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ -[ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TimeFilter.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TimeFilter.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TimeFilter.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TimeFilter.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/TimeFilter.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/LammpsInterface.h:25, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerAtomQuantity.h:7, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerAtomQuantityLibrary.h:6, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerAtomQuantityLibrary.cpp:2: + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/LinearSolver.h:5, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PoissonSolver.h:6, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PoissonSolver.cpp:1: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/LinearSolver.h:5, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PoissonSolver.h:6, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PoissonSolver.cpp:1: + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/LammpsInterface.h:25, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerAtomQuantity.h:7, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerAtomQuantityLibrary.h:6, + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/PerAtomQuantityLibrary.cpp:2: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); @@ -5613,10 +5651,14 @@ /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ -[ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TimeIntegrator.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TimeIntegrator.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TimeIntegrator.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TimeIntegrator.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/TimeIntegrator.cpp [ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferLibrary.cpp.o /usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferLibrary.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferLibrary.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferLibrary.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferLibrary.cpp +[ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferOperator.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferOperator.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferOperator.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferOperator.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferOperator.cpp +[ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Vector.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Vector.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Vector.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Vector.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/Vector.cpp +[ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ViscousStress.cpp.o +/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ViscousStress.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ViscousStress.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ViscousStress.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ViscousStress.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/AtomicRegulator.h:6, @@ -5626,12 +5668,6 @@ /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ -[ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferOperator.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferOperator.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferOperator.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferOperator.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferOperator.cpp -[ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/Vector.cpp.o -[ 13%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/ViscousStress.cpp.o 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-I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationChargeDiffusion.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationChargeDiffusion.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationChargeDiffusion.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationChargeDiffusion.cpp [ 14%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationDiffusion.cpp.o @@ -5640,8 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-DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMomentum.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMomentum.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMomentum.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMomentum.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/ATC_TypeDefs.h:17, from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquation.h:7, @@ -5660,37 +5698,35 @@ /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ -[ 14%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMomentum.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMomentum.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMomentum.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMomentum.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationMomentum.cpp -[ 14%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPhononTemperature.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection 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/build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferOperator.h:6, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferLibrary.h:11, - from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferLibrary.cpp:2: + from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/TransferOperator.cpp:2: /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h: In member function 'T& ATC_matrix::CloneVector::operator[](ATC_matrix::INDEX) [with T = double]': /build/reproducible-path/lammps-20240207+dfsg/lib/atc/CloneVector.h:117:19: warning: 'this' pointer is null [-Wnonnull] 117 | return (*_baseV)(i); | ~~~~~~~~~^~~ -[ 14%] Building CXX object CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationSchrodinger.cpp.o -/usr/bin/c++ -DLAMMPS_SMALLBIG -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX -D_MPICC_H -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem 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-I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/src -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -MD -MT CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPhononTemperature.cpp.o -MF CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPhononTemperature.cpp.o.d -o CMakeFiles/atc.dir/build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPhononTemperature.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/lib/atc/WeakEquationPhononTemperature.cpp In file included from /build/reproducible-path/lammps-20240207+dfsg/lib/atc/MatrixLibrary.h:7, from 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-Dlammps_EXPORTS -I/build/reproducible-path/lammps-20240207+dfsg/src -I/build/reproducible-path/lammps-20240207+dfsg/src/ASPHERE -I/build/reproducible-path/lammps-20240207+dfsg/src/ATC -I/build/reproducible-path/lammps-20240207+dfsg/src/AWPMD -I/build/reproducible-path/lammps-20240207+dfsg/src/BOCS -I/build/reproducible-path/lammps-20240207+dfsg/src/BODY -I/build/reproducible-path/lammps-20240207+dfsg/src/CG-DNA -I/build/reproducible-path/lammps-20240207+dfsg/src/CG-SPICA -I/build/reproducible-path/lammps-20240207+dfsg/src/CLASS2 -I/build/reproducible-path/lammps-20240207+dfsg/src/COLLOID -I/build/reproducible-path/lammps-20240207+dfsg/src/COMPRESS -I/build/reproducible-path/lammps-20240207+dfsg/src/DIELECTRIC -I/build/reproducible-path/lammps-20240207+dfsg/src/DIFFRACTION -I/build/reproducible-path/lammps-20240207+dfsg/src/DIPOLE -I/build/reproducible-path/lammps-20240207+dfsg/src/DPD-BASIC -I/build/reproducible-path/lammps-20240207+dfsg/src/DRUDE -I/build/reproducible-path/lammps-20240207+dfsg/src/EFF -I/build/reproducible-path/lammps-20240207+dfsg/src/ELECTRODE -I/build/reproducible-path/lammps-20240207+dfsg/src/EXTRA-PAIR -I/build/reproducible-path/lammps-20240207+dfsg/src/FEP -I/build/reproducible-path/lammps-20240207+dfsg/src/GRANULAR -I/build/reproducible-path/lammps-20240207+dfsg/src/H5MD -I/build/reproducible-path/lammps-20240207+dfsg/src/KIM -I/build/reproducible-path/lammps-20240207+dfsg/src/KSPACE -I/build/reproducible-path/lammps-20240207+dfsg/src/LATBOLTZ -I/build/reproducible-path/lammps-20240207+dfsg/src/MANIFOLD -I/build/reproducible-path/lammps-20240207+dfsg/src/MANYBODY -I/build/reproducible-path/lammps-20240207+dfsg/src/MC -I/build/reproducible-path/lammps-20240207+dfsg/src/MEAM -I/build/reproducible-path/lammps-20240207+dfsg/src/MGPT -I/build/reproducible-path/lammps-20240207+dfsg/src/MISC -I/build/reproducible-path/lammps-20240207+dfsg/src/MOFFF -I/build/reproducible-path/lammps-20240207+dfsg/src/MOLECULE -I/build/reproducible-path/lammps-20240207+dfsg/src/MOLFILE -I/build/reproducible-path/lammps-20240207+dfsg/src/NETCDF -I/build/reproducible-path/lammps-20240207+dfsg/src/ORIENT -I/build/reproducible-path/lammps-20240207+dfsg/src/PERI -I/build/reproducible-path/lammps-20240207+dfsg/src/PHONON -I/build/reproducible-path/lammps-20240207+dfsg/src/POEMS -I/build/reproducible-path/lammps-20240207+dfsg/src/PYTHON -I/build/reproducible-path/lammps-20240207+dfsg/src/QEQ -I/build/reproducible-path/lammps-20240207+dfsg/src/QTB -I/build/reproducible-path/lammps-20240207+dfsg/src/REPLICA -I/build/reproducible-path/lammps-20240207+dfsg/src/RIGID -I/build/reproducible-path/lammps-20240207+dfsg/src/SHOCK -I/build/reproducible-path/lammps-20240207+dfsg/src/SMTBQ -I/build/reproducible-path/lammps-20240207+dfsg/src/SPH -I/build/reproducible-path/lammps-20240207+dfsg/src/SRD -I/build/reproducible-path/lammps-20240207+dfsg/src/TALLY -I/build/reproducible-path/lammps-20240207+dfsg/src/UEF -I/build/reproducible-path/lammps-20240207+dfsg/src/VORONOI -I/build/reproducible-path/lammps-20240207+dfsg/src/VTK -I/build/reproducible-path/lammps-20240207+dfsg/src/CORESHELL -I/build/reproducible-path/lammps-20240207+dfsg/src/OPENMP -I/build/reproducible-path/lammps-20240207+dfsg/src/OPT -I/build/reproducible-path/lammps-20240207+dfsg/debian/build/styles -I/build/reproducible-path/lammps-20240207+dfsg/lib/molfile -I/build/reproducible-path/lammps-20240207+dfsg/lib/poems -I/build/reproducible-path/lammps-20240207+dfsg/lib/atc -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/systems/interact -I/build/reproducible-path/lammps-20240207+dfsg/lib/awpmd/ivutils/include -I/build/reproducible-path/lammps-20240207+dfsg/lib/h5md/include -I/usr/include/hdf5/serial -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/include/python3.12 -isystem /usr/include/voro++ -isystem /usr/include/vtk-9.3 -isystem /usr/lib/x86_64-linux-gnu/kim-api/mod -isystem /usr/include/kim-api -g -O2 -ffile-prefix-map=/build/reproducible-path/lammps-20240207+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -fopenmp -MD -MT CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/OPENMP/pair_peri_pmb_omp.cpp.o -MF CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/OPENMP/pair_peri_pmb_omp.cpp.o.d -o CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/OPENMP/pair_peri_pmb_omp.cpp.o -c /build/reproducible-path/lammps-20240207+dfsg/src/OPENMP/pair_peri_pmb_omp.cpp [ 99%] Building CXX object CMakeFiles/lammps.dir/build/reproducible-path/lammps-20240207+dfsg/src/OPENMP/fix_nh_asphere_omp.cpp.o @@ -8207,7 +8243,7 @@ -e 's,@LAMMPS_SOURCE_DIR@,/build/reproducible-path/lammps-20240207+dfsg/doc/../src,g' \ -e 's,@LAMMPS_PYTHON_DIR@,/build/reproducible-path/lammps-20240207+dfsg/doc/../python,g' \ -e 's,@LAMMPS_DOC_DIR@,/build/reproducible-path/lammps-20240207+dfsg/doc,g' /build/reproducible-path/lammps-20240207+dfsg/doc/utils/sphinx-config/conf.py.in > /build/reproducible-path/lammps-20240207+dfsg/doc/utils/sphinx-config/conf.py -WARNING: The directory '/nonexistent/first-build/.cache/pip' or its parent directory is not owned or is not writable by the current user. The cache has been disabled. Check the permissions and owner of that directory. If executing pip with sudo, you should use sudo's -H flag. +WARNING: The directory '/nonexistent/second-build/.cache/pip' or its parent directory is not owned or is not writable by the current user. The cache has been disabled. Check the permissions and owner of that directory. If executing pip with sudo, you should use sudo's -H flag. Obtaining file:///build/reproducible-path/lammps-20240207%2Bdfsg/doc/utils/converters Installing build dependencies: started Installing build dependencies: finished with status 'error' @@ -8216,12 +8252,12 @@ × pip subprocess to install build dependencies did not run successfully. │ exit code: 1 ╰─> [8 lines of output] - WARNING: The directory '/nonexistent/first-build/.cache/pip' or its parent directory is not owned or is not writable by the current user. The cache has been disabled. Check the permissions and owner of that directory. If executing pip with sudo, you should use sudo's -H flag. - WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))': /simple/setuptools/ - WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))': /simple/setuptools/ - WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))': /simple/setuptools/ - WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))': /simple/setuptools/ - WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))': /simple/setuptools/ + WARNING: The directory '/nonexistent/second-build/.cache/pip' or its parent directory is not owned or is not writable by the current user. The cache has been disabled. Check the permissions and owner of that directory. If executing pip with sudo, you should use sudo's -H flag. + WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))': /simple/setuptools/ + WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))': /simple/setuptools/ + WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))': /simple/setuptools/ + WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))': /simple/setuptools/ + WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))': /simple/setuptools/ ERROR: Could not find a version that satisfies the requirement setuptools>=40.8.0 (from versions: none) ERROR: No matching distribution found for setuptools>=40.8.0 [end of output] @@ -11179,8 +11215,8 @@ preparing documents... done copying assets... copying static files... -Writing evaluated template result to /build/reproducible-path/lammps-20240207+dfsg/doc/html/_static/documentation_options.js Writing evaluated template result to /build/reproducible-path/lammps-20240207+dfsg/doc/html/_static/language_data.js +Writing evaluated template result to /build/reproducible-path/lammps-20240207+dfsg/doc/html/_static/documentation_options.js Writing evaluated template result to /build/reproducible-path/lammps-20240207+dfsg/doc/html/_static/basic.css copying static files: done copying extra files... @@ -14270,8 +14306,8 @@ preparing documents... done copying assets... copying static files... -Writing evaluated template result to /build/reproducible-path/lammps-20240207+dfsg/doc/html/_static/documentation_options.js Writing evaluated template result to /build/reproducible-path/lammps-20240207+dfsg/doc/html/_static/language_data.js +Writing evaluated template result to /build/reproducible-path/lammps-20240207+dfsg/doc/html/_static/documentation_options.js Writing evaluated template result to /build/reproducible-path/lammps-20240207+dfsg/doc/html/_static/basic.css copying static files: done copying extra files... @@ -14318,7 +14354,7 @@ 1 by 1 by 1 MPI processor grid Created 8141 atoms using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) - create_atoms CPU = 0.002 seconds + create_atoms CPU = 0.001 seconds 302 atoms in group lower 302 atoms in group upper 604 atoms in group boundary @@ -14379,20 +14415,20 @@ 4600 0.086766447 -3.0437627 0 -2.9634443 -1.0208785 9361.9925 4800 0.088195149 -3.0328502 0 -2.9512093 -1.0272063 9395.6122 5000 0.089415266 -3.0228825 0 -2.9401122 -1.0215336 9436.1637 -Loop time of 4.01376 on 1 procs for 5000 steps with 8141 atoms +Loop time of 2.90353 on 1 procs for 5000 steps with 8141 atoms -Performance: 322888.940 tau/day, 1245.714 timesteps/s, 10.141 Matom-step/s -100.0% CPU use with 1 MPI tasks x 1 OpenMP threads +Performance: 446353.019 tau/day, 1722.041 timesteps/s, 14.019 Matom-step/s +99.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- -Pair | 3.3392 | 3.3392 | 3.3392 | 0.0 | 83.19 -Neigh | 0.19943 | 0.19943 | 0.19943 | 0.0 | 4.97 -Comm | 0.0030613 | 0.0030613 | 0.0030613 | 0.0 | 0.08 -Output | 0.0015154 | 0.0015154 | 0.0015154 | 0.0 | 0.04 -Modify | 0.36762 | 0.36762 | 0.36762 | 0.0 | 9.16 -Other | | 0.103 | | | 2.57 +Pair | 2.3686 | 2.3686 | 2.3686 | 0.0 | 81.58 +Neigh | 0.15849 | 0.15849 | 0.15849 | 0.0 | 5.46 +Comm | 0.0026649 | 0.0026649 | 0.0026649 | 0.0 | 0.09 +Output | 0.0013234 | 0.0013234 | 0.0013234 | 0.0 | 0.05 +Modify | 0.29722 | 0.29722 | 0.29722 | 0.0 | 10.24 +Other | | 0.07518 | | | 2.59 Nlocal: 8141 ave 8141 max 8141 min Histogram: 1 0 0 0 0 0 0 0 0 0 @@ -14405,7 +14441,7 @@ Ave neighs/atom = 8.7690701 Neighbor list builds = 100 Dangerous builds = 0 -Total wall time: 0:00:04 +Total wall time: 0:00:02 rm -rf test mkdir test; cp examples/crack/* test/ cd test; mpirun -np 2 --allow-run-as-root /build/reproducible-path/lammps-20240207+dfsg/debian/build/lmp < in.crack @@ -14479,20 +14515,20 @@ 4600 0.088763719 -3.0446018 0 -2.9624346 -1.027693 9391.6949 4800 0.089467982 -3.0337452 0 -2.950926 -1.0232092 9427.4155 5000 0.089910902 -3.0237571 0 -2.9405279 -1.0174796 9452.031 -Loop time of 2.51163 on 2 procs for 5000 steps with 8141 atoms +Loop time of 1.65661 on 2 procs for 5000 steps with 8141 atoms -Performance: 515999.419 tau/day, 1990.738 timesteps/s, 16.207 Matom-step/s -98.7% CPU use with 2 MPI tasks x 1 OpenMP threads +Performance: 782322.595 tau/day, 3018.220 timesteps/s, 24.571 Matom-step/s +98.9% CPU use with 2 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- -Pair | 1.6134 | 1.7812 | 1.949 | 12.6 | 70.92 -Neigh | 0.11017 | 0.11313 | 0.11608 | 0.9 | 4.50 -Comm | 0.15976 | 0.33191 | 0.50405 | 29.9 | 13.21 -Output | 0.0012394 | 0.0016296 | 0.0020199 | 1.0 | 0.06 -Modify | 0.1771 | 0.19757 | 0.21803 | 4.6 | 7.87 -Other | | 0.08619 | | | 3.43 +Pair | 1.1958 | 1.2037 | 1.2117 | 0.7 | 72.66 +Neigh | 0.085001 | 0.089764 | 0.094527 | 1.6 | 5.42 +Comm | 0.15361 | 0.15676 | 0.15991 | 0.8 | 9.46 +Output | 0.0010112 | 0.0012613 | 0.0015114 | 0.7 | 0.08 +Modify | 0.14765 | 0.14918 | 0.15071 | 0.4 | 9.01 +Other | | 0.0559 | | | 3.37 Nlocal: 4070.5 ave 4085 max 4056 min Histogram: 1 0 0 0 0 0 0 0 0 1 @@ -14505,7 +14541,7 @@ Ave neighs/atom = 8.7704213 Neighbor list builds = 106 Dangerous builds = 0 -Total wall time: 0:00:02 +Total wall time: 0:00:01 rm -rf test make[1]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg' dh_auto_test -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build -Nlammps -Nliblammps-dev -Nliblammps0t64 -Npython3-lammps @@ -14595,35 +14631,35 @@ running build running build_py creating build/lib/lammps +copying lammps/pylammps.py -> build/lib/lammps copying lammps/data.py -> build/lib/lammps -copying lammps/formats.py -> build/lib/lammps copying lammps/numpy_wrapper.py -> build/lib/lammps -copying lammps/pylammps.py -> build/lib/lammps +copying lammps/formats.py -> build/lib/lammps copying lammps/core.py -> build/lib/lammps copying lammps/constants.py -> build/lib/lammps copying lammps/__init__.py -> build/lib/lammps creating build/lib/lammps/mliap -copying lammps/mliap/mliap_unified_lj.py -> build/lib/lammps/mliap -copying lammps/mliap/__init__.py -> build/lib/lammps/mliap -copying lammps/mliap/loader.py -> build/lib/lammps/mliap copying lammps/mliap/mliap_unified_abc.py -> build/lib/lammps/mliap +copying lammps/mliap/loader.py -> build/lib/lammps/mliap copying lammps/mliap/pytorch.py -> build/lib/lammps/mliap +copying lammps/mliap/__init__.py -> build/lib/lammps/mliap +copying lammps/mliap/mliap_unified_lj.py -> build/lib/lammps/mliap installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/lammps +copying build/lib/lammps/pylammps.py -> build/bdist.linux-x86_64/wheel/./lammps copying build/lib/lammps/data.py -> build/bdist.linux-x86_64/wheel/./lammps -copying build/lib/lammps/formats.py -> build/bdist.linux-x86_64/wheel/./lammps copying build/lib/lammps/numpy_wrapper.py -> build/bdist.linux-x86_64/wheel/./lammps -copying build/lib/lammps/pylammps.py -> build/bdist.linux-x86_64/wheel/./lammps -copying build/lib/lammps/core.py -> build/bdist.linux-x86_64/wheel/./lammps +copying build/lib/lammps/formats.py -> build/bdist.linux-x86_64/wheel/./lammps creating build/bdist.linux-x86_64/wheel/lammps/mliap -copying build/lib/lammps/mliap/mliap_unified_lj.py -> build/bdist.linux-x86_64/wheel/./lammps/mliap -copying build/lib/lammps/mliap/__init__.py -> build/bdist.linux-x86_64/wheel/./lammps/mliap -copying build/lib/lammps/mliap/loader.py -> build/bdist.linux-x86_64/wheel/./lammps/mliap copying build/lib/lammps/mliap/mliap_unified_abc.py -> build/bdist.linux-x86_64/wheel/./lammps/mliap +copying build/lib/lammps/mliap/loader.py -> build/bdist.linux-x86_64/wheel/./lammps/mliap copying build/lib/lammps/mliap/pytorch.py -> build/bdist.linux-x86_64/wheel/./lammps/mliap +copying build/lib/lammps/mliap/__init__.py -> build/bdist.linux-x86_64/wheel/./lammps/mliap +copying build/lib/lammps/mliap/mliap_unified_lj.py -> build/bdist.linux-x86_64/wheel/./lammps/mliap +copying build/lib/lammps/core.py -> build/bdist.linux-x86_64/wheel/./lammps copying build/lib/lammps/constants.py -> build/bdist.linux-x86_64/wheel/./lammps copying build/lib/lammps/__init__.py -> build/bdist.linux-x86_64/wheel/./lammps running install_egg_info @@ -14638,7 +14674,7 @@ Copying lammps.egg-info to build/bdist.linux-x86_64/wheel/./lammps-2024.2.7.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/lammps-2024.2.7.dist-info/WHEEL -creating '/build/reproducible-path/lammps-20240207+dfsg/.pybuild/cpython3_3.13_lammps/.tmp-sty5pdcm/lammps-2024.2.7-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it +creating '/build/reproducible-path/lammps-20240207+dfsg/.pybuild/cpython3_3.13_lammps/.tmp-v0edg6gx/lammps-2024.2.7-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'lammps/__init__.py' adding 'lammps/constants.py' adding 'lammps/core.py' @@ -14677,35 +14713,35 @@ running build running build_py creating build/lib/lammps +copying lammps/pylammps.py -> build/lib/lammps copying lammps/data.py -> build/lib/lammps -copying lammps/formats.py -> build/lib/lammps copying lammps/numpy_wrapper.py -> build/lib/lammps -copying lammps/pylammps.py -> build/lib/lammps +copying lammps/formats.py -> build/lib/lammps copying lammps/core.py -> build/lib/lammps copying lammps/constants.py -> build/lib/lammps copying lammps/__init__.py -> build/lib/lammps creating build/lib/lammps/mliap -copying lammps/mliap/mliap_unified_lj.py -> build/lib/lammps/mliap -copying lammps/mliap/__init__.py -> build/lib/lammps/mliap -copying lammps/mliap/loader.py -> build/lib/lammps/mliap copying lammps/mliap/mliap_unified_abc.py -> build/lib/lammps/mliap +copying lammps/mliap/loader.py -> build/lib/lammps/mliap copying lammps/mliap/pytorch.py -> build/lib/lammps/mliap +copying lammps/mliap/__init__.py -> build/lib/lammps/mliap +copying lammps/mliap/mliap_unified_lj.py -> build/lib/lammps/mliap installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/lammps +copying build/lib/lammps/pylammps.py -> build/bdist.linux-x86_64/wheel/./lammps copying build/lib/lammps/data.py -> build/bdist.linux-x86_64/wheel/./lammps -copying build/lib/lammps/formats.py -> build/bdist.linux-x86_64/wheel/./lammps copying build/lib/lammps/numpy_wrapper.py -> build/bdist.linux-x86_64/wheel/./lammps -copying build/lib/lammps/pylammps.py -> build/bdist.linux-x86_64/wheel/./lammps -copying build/lib/lammps/core.py -> build/bdist.linux-x86_64/wheel/./lammps +copying build/lib/lammps/formats.py -> build/bdist.linux-x86_64/wheel/./lammps creating build/bdist.linux-x86_64/wheel/lammps/mliap -copying build/lib/lammps/mliap/mliap_unified_lj.py -> build/bdist.linux-x86_64/wheel/./lammps/mliap -copying build/lib/lammps/mliap/__init__.py -> build/bdist.linux-x86_64/wheel/./lammps/mliap -copying build/lib/lammps/mliap/loader.py -> build/bdist.linux-x86_64/wheel/./lammps/mliap copying build/lib/lammps/mliap/mliap_unified_abc.py -> build/bdist.linux-x86_64/wheel/./lammps/mliap +copying build/lib/lammps/mliap/loader.py -> build/bdist.linux-x86_64/wheel/./lammps/mliap copying build/lib/lammps/mliap/pytorch.py -> build/bdist.linux-x86_64/wheel/./lammps/mliap +copying build/lib/lammps/mliap/__init__.py -> build/bdist.linux-x86_64/wheel/./lammps/mliap +copying build/lib/lammps/mliap/mliap_unified_lj.py -> build/bdist.linux-x86_64/wheel/./lammps/mliap +copying build/lib/lammps/core.py -> build/bdist.linux-x86_64/wheel/./lammps copying build/lib/lammps/constants.py -> build/bdist.linux-x86_64/wheel/./lammps copying build/lib/lammps/__init__.py -> build/bdist.linux-x86_64/wheel/./lammps running install_egg_info @@ -14720,7 +14756,7 @@ Copying lammps.egg-info to build/bdist.linux-x86_64/wheel/./lammps-2024.2.7.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/lammps-2024.2.7.dist-info/WHEEL -creating '/build/reproducible-path/lammps-20240207+dfsg/.pybuild/cpython3_3.12_lammps/.tmp-spyf2rvf/lammps-2024.2.7-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it +creating '/build/reproducible-path/lammps-20240207+dfsg/.pybuild/cpython3_3.12_lammps/.tmp-7invkfb7/lammps-2024.2.7-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'lammps/__init__.py' adding 'lammps/constants.py' adding 'lammps/core.py' @@ -14816,20 +14852,20 @@ Step Temp E_pair E_mol TotEng Press 0 1.44 -6.7733681 0 -4.6139081 -5.0199732 100 0.75715334 -5.7581426 0 -4.6226965 0.20850222 -Loop time of 0.267945 on 1 procs for 100 steps with 4000 atoms +Loop time of 0.199555 on 1 procs for 100 steps with 4000 atoms -Performance: 161226.981 tau/day, 373.211 timesteps/s, 1.493 Matom-step/s +Performance: 216481.562 tau/day, 501.115 timesteps/s, 2.004 Matom-step/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- -Pair | 0.22292 | 0.22292 | 0.22292 | 0.0 | 83.20 -Neigh | 0.036041 | 0.036041 | 0.036041 | 0.0 | 13.45 -Comm | 0.0044844 | 0.0044844 | 0.0044844 | 0.0 | 1.67 -Output | 4.7018e-05 | 4.7018e-05 | 4.7018e-05 | 0.0 | 0.02 -Modify | 0.0036496 | 0.0036496 | 0.0036496 | 0.0 | 1.36 -Other | | 0.0008035 | | | 0.30 +Pair | 0.165 | 0.165 | 0.165 | 0.0 | 82.68 +Neigh | 0.028284 | 0.028284 | 0.028284 | 0.0 | 14.17 +Comm | 0.0032785 | 0.0032785 | 0.0032785 | 0.0 | 1.64 +Output | 4.2315e-05 | 4.2315e-05 | 4.2315e-05 | 0.0 | 0.02 +Modify | 0.0025034 | 0.0025034 | 0.0025034 | 0.0 | 1.25 +Other | | 0.0004466 | | | 0.22 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 @@ -14858,3197 +14894,3197 @@ debian/rules execute_after_dh_fixperms-indep make[1]: Entering directory '/build/reproducible-path/lammps-20240207+dfsg' find /build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/ -type f -a -not -name *.sh -print -exec chmod 644 {} \; -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/qeq/data.CHO -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/qeq/log.30Nov23.reaxff.g++.1 -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/qeq/ffield.reax.cho -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/qeq/log.20Apr21.qeq.buck.g++.4 -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/qeq/param.qeq2 -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/qeq/buck.inc -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/qeq/param.qeq.reax -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/qeq/in.qeq.buck -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/qeq/log.30Nov23.reaxff.g++.4 -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/qeq/param.qeq1 -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/qeq/data.aC -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/qeq/in.qeq.reaxff -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/qeq/log.20Apr21.qeq.buck.g++.1 -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/kim/log.10Feb21.in.lammps.melt.clang.1 -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/kim/plugin/CMakeLists.txt -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/kim/plugin/kimplugin.cpp -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/kim/plugin/README.txt -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/kim/in.kim-sm.melt -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/kim/in.kim-pm-property -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/kim/log.10Feb21.in.kim-pm-query.melt.clang.1 -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/kim/log.10Feb21.in.kim-pm.melt.clang.4 -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/kim/log.10Feb21.in.kim-pm.melt.clang.1 -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/kim/in.kim-pm.melt -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/kim/log.10Feb21.in.kim-ex.melt.clang.1 -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/kim/log.10Feb21.in.kim-ex.melt.clang.4 -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/kim/in.kim-query -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/kim/in.kim-ex.melt -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/kim/log.10Feb21.in.kim-sm.melt.clang.4 -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/kim/in.lammps.melt -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/kim/log.10Feb21.in.kim-pm-property.clang.4 -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/kim/log.10Feb21.in.kim-pm-query.melt.clang.4 -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/kim/log.10Feb21.in.kim-pm-property.clang.1 -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/kim/log.10Feb21.in.kim-query.clang.1 -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/kim/in.kim-pm-query.melt -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/kim/log.10Feb21.in.kim-sm.melt.clang.1 -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/kim/log.10Feb21.in.lammps.melt.clang.4 -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/threebody/log.29Sep21.threebody.g++.4 -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/threebody/log.29Sep21.threebody.g++.1 -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/threebody/in.mos2.sw.mod -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/threebody/in.threebody -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/threebody/log.27Oct21.mos2_sw_mod.g++.1 -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/threebody/single_layer_MoS2.data -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/rigid/log.27Nov18.rigid.atomvar.g++.1 -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/rigid/in.rigid.poems5 -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/rigid/connected-bodies.dat -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/rigid/molecule.data -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/rigid/log.27Nov18.rigid.nve.g++.4 -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/rigid/log.20Mar22.rigid.rigid.molecule.g++.4 -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/rigid/log.20Mar22.rigid.small.infile.g++.1 -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/rigid/in.rigid.small.infile -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/rigid/log.27Nov18.rigid.atomfile.g++.1 -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/rigid/log.27Nov18.rigid.nve.g++.1 -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/rigid/log.27Nov18.rigid.early.g++.1 -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/rigid/data.rigid-property -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/rigid/log.27Nov18.rigid.nve.early.g++.1 -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/rigid/connected-bodies2.dat -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/rigid/in.rigid.small -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/rigid/in.rigid.poems3 -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/rigid/log.20Mar22.rigid.molecule.g++.4 -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/rigid/log.27Nov18.rigid.atomvar.g++.4 -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/rigid/in.rigid.nve.early -/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/rigid/log.20Mar22.rigid.poems3.g++.1 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+/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/ASPHERE/dimer/data.dimer +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/ASPHERE/dimer/dimer.py +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/ASPHERE/dimer/log.1Feb24.dimer.mp.g++.1 +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/ASPHERE/dimer/in.dimer +/build/reproducible-path/lammps-20240207+dfsg/debian/lammps-examples/usr/share/lammps/examples/ASPHERE/dimer/log.1Feb24.dimer.g++.1 make[1]: Leaving directory '/build/reproducible-path/lammps-20240207+dfsg' dh_missing -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build debian/rules override_dh_dwz @@ -18067,13 +18103,13 @@ dh_md5sums -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build dh_builddeb -O--sourcedirectory=cmake -O--builddirectory=/build/reproducible-path/lammps-20240207\+dfsg/debian/build dpkg-deb: building package 'lammps-dbgsym' in '../lammps-dbgsym_20240207+dfsg-2_amd64.deb'. -dpkg-deb: building package 'lammps' in '../lammps_20240207+dfsg-2_amd64.deb'. -dpkg-deb: building package 'liblammps0t64' in '../liblammps0t64_20240207+dfsg-2_amd64.deb'. dpkg-deb: building package 'liblammps-dev' in '../liblammps-dev_20240207+dfsg-2_amd64.deb'. +dpkg-deb: building package 'liblammps0t64' in '../liblammps0t64_20240207+dfsg-2_amd64.deb'. dpkg-deb: building package 'liblammps0t64-dbgsym' in '../liblammps0t64-dbgsym_20240207+dfsg-2_amd64.deb'. -dpkg-deb: building package 'lammps-data' in '../lammps-data_20240207+dfsg-2_all.deb'. +dpkg-deb: building package 'lammps' in '../lammps_20240207+dfsg-2_amd64.deb'. dpkg-deb: building package 'python3-lammps' in '../python3-lammps_20240207+dfsg-2_amd64.deb'. dpkg-deb: building package 'lammps-doc' in '../lammps-doc_20240207+dfsg-2_all.deb'. +dpkg-deb: building package 'lammps-data' in '../lammps-data_20240207+dfsg-2_all.deb'. dpkg-deb: building package 'lammps-examples' in '../lammps-examples_20240207+dfsg-2_all.deb'. dpkg-genbuildinfo --build=binary -O../lammps_20240207+dfsg-2_amd64.buildinfo dpkg-genchanges --build=binary -O../lammps_20240207+dfsg-2_amd64.changes @@ -18082,12 +18118,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3186850/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3186850/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1128056 and its subdirectories -I: Current time: Thu Jan 15 10:57:50 -12 2026 -I: pbuilder-time-stamp: 1768517870 +I: removing directory /srv/workspace/pbuilder/3186850 and its subdirectories +I: Current time: Sat Dec 14 06:51:51 +14 2024 +I: pbuilder-time-stamp: 1734108711