Diff of the two buildlogs: -- --- b1/build.log 2024-05-05 19:46:02.873011246 +0000 +++ b2/build.log 2024-05-05 19:54:15.944044863 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Jun 7 14:04:19 -12 2025 -I: pbuilder-time-stamp: 1749348259 +I: Current time: Mon May 6 09:46:09 +14 2024 +I: pbuilder-time-stamp: 1714938369 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -28,52 +28,84 @@ dpkg-source: info: applying force-link-rt-pthread.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1881741/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/140049/tmp/hooks/D01_modify_environment starting +debug: Running on ionos11-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 5 19:46 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/140049/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/140049/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='2d38bc886ee44829ab14709c4c004ce0' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1881741' - PS1='# ' - PS2='> ' + INVOCATION_ID=c42d994f25a340548a8f9dbc2bdbcc8d + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=140049 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.63owWz6x/pbuilderrc_Eopy --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.63owWz6x/b1 --logfile b1/build.log lambda-align_1.0.3-6.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.63owWz6x/pbuilderrc_wbGQ --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.63owWz6x/b2 --logfile b2/build.log lambda-align_1.0.3-6.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos5-amd64 6.6.13+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.6.13-1~bpo12+1 (2024-02-15) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-20-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Jun 7 14:06 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1881741/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 5 07:43 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/140049/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -177,7 +209,7 @@ Get: 56 http://deb.debian.org/debian unstable/main amd64 libseqan2-dev all 2.4.0+dfsg-16 [1216 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.2.1-3 [1360 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3.1 [918 kB] -Fetched 39.2 MB in 0s (123 MB/s) +Fetched 39.2 MB in 1s (57.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19699 files and directories currently installed.) @@ -429,7 +461,11 @@ fakeroot is already the newest version (1.34-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/reproducible-path/lambda-align-1.0.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../lambda-align_1.0.3-6_source.changes +I: user script /srv/workspace/pbuilder/140049/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/140049/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/lambda-align-1.0.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../lambda-align_1.0.3-6_source.changes dpkg-buildpackage: info: source package lambda-align dpkg-buildpackage: info: source version 1.0.3-6 dpkg-buildpackage: info: source distribution unstable @@ -507,7 +543,7 @@ CMake that the project does not need compatibility with older versions. --- Configuring done (1.0s) +-- Configuring done (1.8s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -524,7 +560,7 @@ -- Build files have been written to: /build/reproducible-path/lambda-align-1.0.3/build make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3' dh_auto_build -O--builddirectory=build - cd build && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 + cd build && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' /usr/bin/cmake -S/build/reproducible-path/lambda-align-1.0.3 -B/build/reproducible-path/lambda-align-1.0.3/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/lambda-align-1.0.3/build/CMakeFiles /build/reproducible-path/lambda-align-1.0.3/build//CMakeFiles/progress.marks @@ -543,9 +579,9 @@ make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' [ 25%] Building CXX object src/CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o +cd /build/reproducible-path/lambda-align-1.0.3/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.4.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -flto=20 -O3 -DNDEBUG -s -MD -MT src/CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -MF CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o.d -o CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -c /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.cpp [ 50%] Building CXX object src/CMakeFiles/lambda.dir/lambda.cpp.o -cd /build/reproducible-path/lambda-align-1.0.3/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.4.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -flto=42 -O3 -DNDEBUG -s -MD -MT src/CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -MF CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o.d -o CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -c /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.cpp -cd /build/reproducible-path/lambda-align-1.0.3/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.4.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -flto=42 -O3 -DNDEBUG -s -MD -MT src/CMakeFiles/lambda.dir/lambda.cpp.o -MF CMakeFiles/lambda.dir/lambda.cpp.o.d -o CMakeFiles/lambda.dir/lambda.cpp.o -c /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp +cd /build/reproducible-path/lambda-align-1.0.3/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.4.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -flto=20 -O3 -DNDEBUG -s -MD -MT src/CMakeFiles/lambda.dir/lambda.cpp.o -MF CMakeFiles/lambda.dir/lambda.cpp.o.d -o CMakeFiles/lambda.dir/lambda.cpp.o -c /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp In file included from /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:32: /build/reproducible-path/lambda-align-1.0.3/src/options.hpp:323:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 323 | setDate(parser, __DATE__); @@ -1356,7 +1392,7 @@ | ~~~~~~^~~~~~~~~~~ [ 75%] Linking CXX executable ../bin/lambda_indexer cd /build/reproducible-path/lambda-align-1.0.3/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/lambda_indexer.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -flto=42 -O3 -DNDEBUG -s -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -o ../bin/lambda_indexer -lrt -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -flto=20 -O3 -DNDEBUG -s -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -o ../bin/lambda_indexer -lrt -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, @@ -1366,15 +1402,13 @@ inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, - inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, - inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, - inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, - inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: -/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] + inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1149:18, + inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1259:11, + inlined from '_toText' at /usr/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: +/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/13/new: In member function 'insertStream': +/usr/include/c++/13/new: In function '_toText': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -1391,7 +1425,7 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: + inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ @@ -1412,7 +1446,7 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: + inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ @@ -1433,7 +1467,7 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: + inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:280:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ @@ -1450,13 +1484,15 @@ inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, - inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1149:18, - inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1259:11, - inlined from '_toText' at /usr/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: -/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] + inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, + inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, + inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, + inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, + inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:290:21: +/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/13/new: In function '_toText': +/usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -1473,7 +1509,7 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:280:21: + inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ @@ -1494,7 +1530,7 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:290:21: + inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ @@ -1515,13 +1551,11 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, - inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, - inlined from 'assign.constprop.isra' at /usr/include/seqan/pipe/pool_base.h:1369:42: + inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/13/new: In function 'assign.constprop.isra': +/usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -1538,12 +1572,11 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, - inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13: + inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/13/new: In function 'append': +/usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -1560,11 +1593,12 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: + inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, + inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/13/new: In member function 'insertStream': +/usr/include/c++/13/new: In function 'append': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -1581,11 +1615,16 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: + inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, + inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, + inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, + inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, + inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, + inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/13/new: In member function 'insertStream': +/usr/include/c++/13/new: In member function 'process.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -1603,15 +1642,12 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, - inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, - inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, - inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, - inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: + inlined from 'assign.constprop.isra' at /usr/include/seqan/pipe/pool_base.h:1369:42: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/13/new: In member function 'process.isra': +/usr/include/c++/13/new: In function 'assign.constprop.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -1671,7 +1707,7 @@ [ 75%] Built target lambda_indexer [100%] Linking CXX executable ../bin/lambda cd /build/reproducible-path/lambda-align-1.0.3/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/lambda.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -flto=42 -O3 -DNDEBUG -s -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/lambda.dir/lambda.cpp.o -o ../bin/lambda -lrt -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wno-vla -flto=20 -O3 -DNDEBUG -s -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/lambda.dir/lambda.cpp.o -o ../bin/lambda -lrt -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, @@ -1685,11 +1721,11 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'operator++.isra' at /usr/include/seqan/index/pipe_merger3.h:127:17: + inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/13/new: In member function 'operator++.isra': +/usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -1706,12 +1742,11 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, - inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13: + inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/13/new: In function 'append': +/usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -1723,16 +1758,14 @@ inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, - inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, - inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, - inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, - inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, - inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: -/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] + inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:0, + inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1149:0, + inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1259:0, + inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: +/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/13/new: In member function 'insertStream': +/usr/include/c++/13/new: In function '_popIterators.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -1744,16 +1777,14 @@ inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, - inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, - inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, - inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, - inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, - inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: -/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] + inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:0, + inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1149:0, + inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1259:0, + inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: +/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/13/new: In member function 'insertStream': +/usr/include/c++/13/new: In function '_popIterators.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -1770,7 +1801,7 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: + inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:280:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ @@ -1791,7 +1822,7 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: + inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:290:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ @@ -1812,7 +1843,7 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:280:21: + inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ @@ -1833,7 +1864,7 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:290:21: + inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ @@ -1868,16 +1899,14 @@ inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, - inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, - inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, - inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, - inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, - inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: -/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] + inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:0, + inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1149:0, + inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1259:0, + inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: +/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/13/new: In member function 'insertStream': +/usr/include/c++/13/new: In function '_popIterators.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -1894,11 +1923,13 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: + inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, + inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, + inlined from 'assign.constprop.isra' at /usr/include/seqan/pipe/pool_base.h:1369:42: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/13/new: In member function 'insertStream': +/usr/include/c++/13/new: In function 'assign.constprop.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -1910,14 +1941,16 @@ inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, - inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:0, - inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1149:0, - inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1259:0, - inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: -/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] + inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, + inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, + inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, + inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, + inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, + inlined from 'operator++.isra' at /usr/include/seqan/index/pipe_merger3.h:127:17: +/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/13/new: In function '_popIterators.isra': +/usr/include/c++/13/new: In member function 'operator++.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -1929,14 +1962,17 @@ inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, - inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:0, - inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1149:0, - inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1259:0, - inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: -/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] + inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, + inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, + inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, + inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, + inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, + inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, + inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13: +/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/13/new: In function '_popIterators.isra': +/usr/include/c++/13/new: In function 'append': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -1948,14 +1984,16 @@ inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, - inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:0, - inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1149:0, - inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1259:0, - inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: -/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] + inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, + inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, + inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, + inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, + inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, + inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: +/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/13/new: In function '_popIterators.isra': +/usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -1972,7 +2010,7 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: + inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ @@ -1988,16 +2026,14 @@ inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, - inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, - inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, - inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, - inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, - inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: -/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] + inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:0, + inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1149:0, + inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1259:0, + inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: +/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/13/new: In member function 'insertStream': +/usr/include/c++/13/new: In function '_popIterators.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -2009,16 +2045,14 @@ inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, - inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, - inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, - inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, - inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, - inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: -/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] + inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:0, + inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1149:0, + inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1259:0, + inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: +/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/13/new: In member function 'insertStream': +/usr/include/c++/13/new: In function '_popIterators.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -2035,7 +2069,7 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: + inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ @@ -2056,13 +2090,11 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, - inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, - inlined from 'assign.constprop.isra' at /usr/include/seqan/pipe/pool_base.h:1369:42: + inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/13/new: In function 'assign.constprop.isra': +/usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -2074,14 +2106,16 @@ inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, - inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:0, - inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1149:0, - inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1259:0, - inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: -/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] + inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, + inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, + inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, + inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, + inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, + inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: +/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/13/new: In function '_popIterators.isra': +/usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -2093,14 +2127,16 @@ inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1665:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1725:45, - inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:0, - inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1149:0, - inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1259:0, - inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: -/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] + inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1785:50, + inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, + inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, + inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, + inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, + inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: +/usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/13/new: In function '_popIterators.isra': +/usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -2190,6 +2226,18 @@ /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ +In member function 'operator++', + inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, + inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, + inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, + inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:317:20: +/usr/include/seqan/pipe/pipe_sampler.h:470:49: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] + 470 | outRef->i2.i[skipped++] = 0; + | ^ +/usr/include/seqan/basic/tuple_base.h: In member function 'process.isra': +/usr/include/seqan/basic/tuple_base.h:141:46: note: at offset 7 into destination object 'i' of size 7 + 141 | typename StoredTupleValue_::Type i[SIZE]; + | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, @@ -2203,11 +2251,16 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: + inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, + inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, + inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, + inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, + inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, + inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/13/new: In member function 'insertStream': +/usr/include/c++/13/new: In member function 'process.isra': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -2224,7 +2277,7 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: + inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ @@ -2232,18 +2285,6 @@ /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ -In member function 'operator++', - inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, - inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, - inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, - inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:317:20: -/usr/include/seqan/pipe/pipe_sampler.h:470:49: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] - 470 | outRef->i2.i[skipped++] = 0; - | ^ -/usr/include/seqan/basic/tuple_base.h: In member function 'process.isra': -/usr/include/seqan/basic/tuple_base.h:141:46: note: at offset 7 into destination object 'i' of size 7 - 141 | typename StoredTupleValue_::Type i[SIZE]; - | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1532:28, @@ -2257,16 +2298,11 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, - inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, - inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, - inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, - inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, - inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:328:26: + inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/13/new: In member function 'process.isra': +/usr/include/c++/13/new: In member function 'insertStream': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'operator new' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -2501,172 +2537,172 @@ make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3' -cd build/tests && ctest 42 +cd build/tests && ctest 20 Test project /build/reproducible-path/lambda-align-1.0.3/build/tests Start 1: test_mkindex_blastn_sa - 1/80 Test #1: test_mkindex_blastn_sa ........... Passed 0.09 sec + 1/80 Test #1: test_mkindex_blastn_sa ........... Passed 0.27 sec Start 2: test_mkindex_blastn_fm - 2/80 Test #2: test_mkindex_blastn_fm ........... Passed 0.11 sec + 2/80 Test #2: test_mkindex_blastn_fm ........... Passed 0.28 sec Start 3: test_mkindex_blastp_sa - 3/80 Test #3: test_mkindex_blastp_sa ........... Passed 0.08 sec + 3/80 Test #3: test_mkindex_blastp_sa ........... Passed 0.11 sec Start 4: test_mkindex_blastp_fm - 4/80 Test #4: test_mkindex_blastp_fm ........... Passed 0.06 sec + 4/80 Test #4: test_mkindex_blastp_fm ........... Passed 0.19 sec Start 5: test_mkindex_blastx_sa - 5/80 Test #5: test_mkindex_blastx_sa ........... Passed 0.04 sec + 5/80 Test #5: test_mkindex_blastx_sa ........... Passed 0.13 sec Start 6: test_mkindex_blastx_fm - 6/80 Test #6: test_mkindex_blastx_fm ........... Passed 0.06 sec + 6/80 Test #6: test_mkindex_blastx_fm ........... Passed 0.16 sec Start 7: test_mkindex_tblastn_sa - 7/80 Test #7: test_mkindex_tblastn_sa .......... Passed 0.38 sec + 7/80 Test #7: test_mkindex_tblastn_sa .......... Passed 0.39 sec Start 8: test_mkindex_tblastn_fm - 8/80 Test #8: test_mkindex_tblastn_fm .......... Passed 0.42 sec + 8/80 Test #8: test_mkindex_tblastn_fm .......... Passed 0.44 sec Start 9: test_mkindex_tblastx_sa - 9/80 Test #9: test_mkindex_tblastx_sa .......... Passed 0.11 sec + 9/80 Test #9: test_mkindex_tblastx_sa .......... Passed 0.30 sec Start 10: test_mkindex_tblastx_fm -10/80 Test #10: test_mkindex_tblastx_fm .......... Passed 0.24 sec +10/80 Test #10: test_mkindex_tblastx_fm .......... Passed 0.40 sec Start 11: test_search_blastn_sa_m0 -11/80 Test #11: test_search_blastn_sa_m0 ......... Passed 2.97 sec +11/80 Test #11: test_search_blastn_sa_m0 ......... Passed 3.13 sec Start 12: test_search_blastn_sa_m8 -12/80 Test #12: test_search_blastn_sa_m8 ......... Passed 1.36 sec +12/80 Test #12: test_search_blastn_sa_m8 ......... Passed 2.94 sec Start 13: test_search_blastn_sa_m9 -13/80 Test #13: test_search_blastn_sa_m9 ......... Passed 1.30 sec +13/80 Test #13: test_search_blastn_sa_m9 ......... Passed 4.00 sec Start 14: test_search_blastn_sa_sam -14/80 Test #14: test_search_blastn_sa_sam ........ Passed 2.01 sec +14/80 Test #14: test_search_blastn_sa_sam ........ Passed 4.60 sec Start 15: test_search_blastn_sa_bam -15/80 Test #15: test_search_blastn_sa_bam ........ Passed 1.29 sec +15/80 Test #15: test_search_blastn_sa_bam ........ Passed 2.49 sec Start 16: test_search_blastn_sa_m9.gz -16/80 Test #16: test_search_blastn_sa_m9.gz ...... Passed 1.71 sec +16/80 Test #16: test_search_blastn_sa_m9.gz ...... Passed 3.16 sec Start 17: test_search_blastn_sa_sam.bz2 -17/80 Test #17: test_search_blastn_sa_sam.bz2 .... Passed 2.50 sec +17/80 Test #17: test_search_blastn_sa_sam.bz2 .... Passed 3.66 sec Start 18: test_search_blastn_fm_m0 -18/80 Test #18: test_search_blastn_fm_m0 ......... Passed 6.67 sec +18/80 Test #18: test_search_blastn_fm_m0 ......... Passed 3.51 sec Start 19: test_search_blastn_fm_m8 -19/80 Test #19: test_search_blastn_fm_m8 ......... Passed 5.48 sec +19/80 Test #19: test_search_blastn_fm_m8 ......... Passed 2.68 sec Start 20: test_search_blastn_fm_m9 -20/80 Test #20: test_search_blastn_fm_m9 ......... Passed 1.57 sec +20/80 Test #20: test_search_blastn_fm_m9 ......... Passed 3.64 sec Start 21: test_search_blastn_fm_sam -21/80 Test #21: test_search_blastn_fm_sam ........ Passed 2.37 sec +21/80 Test #21: test_search_blastn_fm_sam ........ Passed 3.97 sec Start 22: test_search_blastn_fm_bam -22/80 Test #22: test_search_blastn_fm_bam ........ Passed 1.32 sec +22/80 Test #22: test_search_blastn_fm_bam ........ Passed 3.20 sec Start 23: test_search_blastn_fm_m9.gz -23/80 Test #23: test_search_blastn_fm_m9.gz ...... Passed 1.47 sec +23/80 Test #23: test_search_blastn_fm_m9.gz ...... Passed 2.87 sec Start 24: test_search_blastn_fm_sam.bz2 -24/80 Test #24: test_search_blastn_fm_sam.bz2 .... Passed 1.97 sec +24/80 Test #24: test_search_blastn_fm_sam.bz2 .... Passed 3.70 sec Start 25: test_search_blastp_sa_m0 -25/80 Test #25: test_search_blastp_sa_m0 ......... Passed 0.21 sec +25/80 Test #25: test_search_blastp_sa_m0 ......... Passed 1.16 sec Start 26: test_search_blastp_sa_m8 -26/80 Test #26: test_search_blastp_sa_m8 ......... Passed 0.22 sec +26/80 Test #26: test_search_blastp_sa_m8 ......... Passed 0.76 sec Start 27: test_search_blastp_sa_m9 -27/80 Test #27: test_search_blastp_sa_m9 ......... Passed 0.17 sec +27/80 Test #27: test_search_blastp_sa_m9 ......... Passed 0.35 sec Start 28: test_search_blastp_sa_sam -28/80 Test #28: test_search_blastp_sa_sam ........ Passed 0.25 sec +28/80 Test #28: test_search_blastp_sa_sam ........ Passed 0.42 sec Start 29: test_search_blastp_sa_bam -29/80 Test #29: test_search_blastp_sa_bam ........ Passed 0.33 sec +29/80 Test #29: test_search_blastp_sa_bam ........ Passed 0.47 sec Start 30: test_search_blastp_sa_m9.gz 30/80 Test #30: test_search_blastp_sa_m9.gz ...... Passed 0.32 sec Start 31: test_search_blastp_sa_sam.bz2 -31/80 Test #31: test_search_blastp_sa_sam.bz2 .... Passed 0.37 sec +31/80 Test #31: test_search_blastp_sa_sam.bz2 .... Passed 0.38 sec Start 32: test_search_blastp_fm_m0 -32/80 Test #32: test_search_blastp_fm_m0 ......... Passed 0.21 sec +32/80 Test #32: test_search_blastp_fm_m0 ......... Passed 0.53 sec Start 33: test_search_blastp_fm_m8 -33/80 Test #33: test_search_blastp_fm_m8 ......... Passed 0.19 sec +33/80 Test #33: test_search_blastp_fm_m8 ......... Passed 0.39 sec Start 34: test_search_blastp_fm_m9 -34/80 Test #34: test_search_blastp_fm_m9 ......... Passed 0.29 sec +34/80 Test #34: test_search_blastp_fm_m9 ......... Passed 0.42 sec Start 35: test_search_blastp_fm_sam -35/80 Test #35: test_search_blastp_fm_sam ........ Passed 0.26 sec +35/80 Test #35: test_search_blastp_fm_sam ........ Passed 0.91 sec Start 36: test_search_blastp_fm_bam -36/80 Test #36: test_search_blastp_fm_bam ........ Passed 0.21 sec +36/80 Test #36: test_search_blastp_fm_bam ........ Passed 0.84 sec Start 37: test_search_blastp_fm_m9.gz -37/80 Test #37: test_search_blastp_fm_m9.gz ...... Passed 0.20 sec +37/80 Test #37: test_search_blastp_fm_m9.gz ...... Passed 0.50 sec Start 38: test_search_blastp_fm_sam.bz2 -38/80 Test #38: test_search_blastp_fm_sam.bz2 .... Passed 0.29 sec +38/80 Test #38: test_search_blastp_fm_sam.bz2 .... Passed 1.04 sec Start 39: test_search_blastx_sa_m0 -39/80 Test #39: test_search_blastx_sa_m0 ......... Passed 0.71 sec +39/80 Test #39: test_search_blastx_sa_m0 ......... Passed 2.50 sec Start 40: test_search_blastx_sa_m8 -40/80 Test #40: test_search_blastx_sa_m8 ......... Passed 1.68 sec +40/80 Test #40: test_search_blastx_sa_m8 ......... Passed 2.02 sec Start 41: test_search_blastx_sa_m9 -41/80 Test #41: test_search_blastx_sa_m9 ......... Passed 0.71 sec +41/80 Test #41: test_search_blastx_sa_m9 ......... Passed 1.65 sec Start 42: test_search_blastx_sa_sam -42/80 Test #42: test_search_blastx_sa_sam ........ Passed 0.67 sec +42/80 Test #42: test_search_blastx_sa_sam ........ Passed 1.75 sec Start 43: test_search_blastx_sa_bam -43/80 Test #43: test_search_blastx_sa_bam ........ Passed 0.80 sec +43/80 Test #43: test_search_blastx_sa_bam ........ Passed 1.43 sec Start 44: test_search_blastx_sa_m9.gz -44/80 Test #44: test_search_blastx_sa_m9.gz ...... Passed 1.11 sec +44/80 Test #44: test_search_blastx_sa_m9.gz ...... Passed 1.28 sec Start 45: test_search_blastx_sa_sam.bz2 -45/80 Test #45: test_search_blastx_sa_sam.bz2 .... Passed 1.68 sec +45/80 Test #45: test_search_blastx_sa_sam.bz2 .... Passed 1.97 sec Start 46: test_search_blastx_fm_m0 -46/80 Test #46: test_search_blastx_fm_m0 ......... Passed 4.06 sec +46/80 Test #46: test_search_blastx_fm_m0 ......... Passed 1.89 sec Start 47: test_search_blastx_fm_m8 -47/80 Test #47: test_search_blastx_fm_m8 ......... Passed 1.62 sec +47/80 Test #47: test_search_blastx_fm_m8 ......... Passed 1.17 sec Start 48: test_search_blastx_fm_m9 -48/80 Test #48: test_search_blastx_fm_m9 ......... Passed 1.37 sec +48/80 Test #48: test_search_blastx_fm_m9 ......... Passed 1.55 sec Start 49: test_search_blastx_fm_sam -49/80 Test #49: test_search_blastx_fm_sam ........ Passed 0.72 sec +49/80 Test #49: test_search_blastx_fm_sam ........ Passed 1.29 sec Start 50: test_search_blastx_fm_bam -50/80 Test #50: test_search_blastx_fm_bam ........ Passed 0.69 sec +50/80 Test #50: test_search_blastx_fm_bam ........ Passed 1.33 sec Start 51: test_search_blastx_fm_m9.gz -51/80 Test #51: test_search_blastx_fm_m9.gz ...... Passed 0.81 sec +51/80 Test #51: test_search_blastx_fm_m9.gz ...... Passed 1.22 sec Start 52: test_search_blastx_fm_sam.bz2 -52/80 Test #52: test_search_blastx_fm_sam.bz2 .... Passed 2.45 sec +52/80 Test #52: test_search_blastx_fm_sam.bz2 .... Passed 1.66 sec Start 53: test_search_tblastn_sa_m0 -53/80 Test #53: test_search_tblastn_sa_m0 ........ Passed 0.83 sec +53/80 Test #53: test_search_tblastn_sa_m0 ........ Passed 1.11 sec Start 54: test_search_tblastn_sa_m8 -54/80 Test #54: test_search_tblastn_sa_m8 ........ Passed 0.67 sec +54/80 Test #54: test_search_tblastn_sa_m8 ........ Passed 1.05 sec Start 55: test_search_tblastn_sa_m9 -55/80 Test #55: test_search_tblastn_sa_m9 ........ Passed 1.03 sec +55/80 Test #55: test_search_tblastn_sa_m9 ........ Passed 1.50 sec Start 56: test_search_tblastn_sa_sam -56/80 Test #56: test_search_tblastn_sa_sam ....... Passed 0.99 sec +56/80 Test #56: test_search_tblastn_sa_sam ....... Passed 1.72 sec Start 57: test_search_tblastn_sa_bam -57/80 Test #57: test_search_tblastn_sa_bam ....... Passed 0.80 sec +57/80 Test #57: test_search_tblastn_sa_bam ....... Passed 1.43 sec Start 58: test_search_tblastn_sa_m9.gz -58/80 Test #58: test_search_tblastn_sa_m9.gz ..... Passed 2.22 sec +58/80 Test #58: test_search_tblastn_sa_m9.gz ..... Passed 1.67 sec Start 59: test_search_tblastn_sa_sam.bz2 -59/80 Test #59: test_search_tblastn_sa_sam.bz2 ... Passed 1.22 sec +59/80 Test #59: test_search_tblastn_sa_sam.bz2 ... Passed 2.12 sec Start 60: test_search_tblastn_fm_m0 -60/80 Test #60: test_search_tblastn_fm_m0 ........ Passed 1.60 sec +60/80 Test #60: test_search_tblastn_fm_m0 ........ Passed 2.43 sec Start 61: test_search_tblastn_fm_m8 -61/80 Test #61: test_search_tblastn_fm_m8 ........ Passed 0.59 sec +61/80 Test #61: test_search_tblastn_fm_m8 ........ Passed 1.27 sec Start 62: test_search_tblastn_fm_m9 -62/80 Test #62: test_search_tblastn_fm_m9 ........ Passed 0.59 sec +62/80 Test #62: test_search_tblastn_fm_m9 ........ Passed 1.47 sec Start 63: test_search_tblastn_fm_sam -63/80 Test #63: test_search_tblastn_fm_sam ....... Passed 0.84 sec +63/80 Test #63: test_search_tblastn_fm_sam ....... Passed 1.21 sec Start 64: test_search_tblastn_fm_bam -64/80 Test #64: test_search_tblastn_fm_bam ....... Passed 0.50 sec +64/80 Test #64: test_search_tblastn_fm_bam ....... Passed 0.92 sec Start 65: test_search_tblastn_fm_m9.gz -65/80 Test #65: test_search_tblastn_fm_m9.gz ..... Passed 0.63 sec +65/80 Test #65: test_search_tblastn_fm_m9.gz ..... Passed 1.35 sec Start 66: test_search_tblastn_fm_sam.bz2 -66/80 Test #66: test_search_tblastn_fm_sam.bz2 ... Passed 0.87 sec +66/80 Test #66: test_search_tblastn_fm_sam.bz2 ... Passed 1.38 sec Start 67: test_search_tblastx_sa_m0 -67/80 Test #67: test_search_tblastx_sa_m0 ........ Passed 2.93 sec +67/80 Test #67: test_search_tblastx_sa_m0 ........ Passed 6.27 sec Start 68: test_search_tblastx_sa_m8 -68/80 Test #68: test_search_tblastx_sa_m8 ........ Passed 3.52 sec +68/80 Test #68: test_search_tblastx_sa_m8 ........ Passed 4.28 sec Start 69: test_search_tblastx_sa_m9 -69/80 Test #69: test_search_tblastx_sa_m9 ........ Passed 4.29 sec +69/80 Test #69: test_search_tblastx_sa_m9 ........ Passed 3.64 sec Start 70: test_search_tblastx_sa_sam -70/80 Test #70: test_search_tblastx_sa_sam ....... Passed 4.02 sec +70/80 Test #70: test_search_tblastx_sa_sam ....... Passed 4.46 sec Start 71: test_search_tblastx_sa_bam -71/80 Test #71: test_search_tblastx_sa_bam ....... Passed 2.90 sec +71/80 Test #71: test_search_tblastx_sa_bam ....... Passed 4.22 sec Start 72: test_search_tblastx_sa_m9.gz -72/80 Test #72: test_search_tblastx_sa_m9.gz ..... Passed 2.87 sec +72/80 Test #72: test_search_tblastx_sa_m9.gz ..... Passed 4.35 sec Start 73: test_search_tblastx_sa_sam.bz2 -73/80 Test #73: test_search_tblastx_sa_sam.bz2 ... Passed 4.88 sec +73/80 Test #73: test_search_tblastx_sa_sam.bz2 ... Passed 7.42 sec Start 74: test_search_tblastx_fm_m0 -74/80 Test #74: test_search_tblastx_fm_m0 ........ Passed 3.74 sec +74/80 Test #74: test_search_tblastx_fm_m0 ........ Passed 4.73 sec Start 75: test_search_tblastx_fm_m8 -75/80 Test #75: test_search_tblastx_fm_m8 ........ Passed 3.50 sec +75/80 Test #75: test_search_tblastx_fm_m8 ........ Passed 3.43 sec Start 76: test_search_tblastx_fm_m9 -76/80 Test #76: test_search_tblastx_fm_m9 ........ Passed 2.44 sec +76/80 Test #76: test_search_tblastx_fm_m9 ........ Passed 3.52 sec Start 77: test_search_tblastx_fm_sam -77/80 Test #77: test_search_tblastx_fm_sam ....... Passed 2.35 sec +77/80 Test #77: test_search_tblastx_fm_sam ....... Passed 7.05 sec Start 78: test_search_tblastx_fm_bam -78/80 Test #78: test_search_tblastx_fm_bam ....... Passed 2.16 sec +78/80 Test #78: test_search_tblastx_fm_bam ....... Passed 3.39 sec Start 79: test_search_tblastx_fm_m9.gz -79/80 Test #79: test_search_tblastx_fm_m9.gz ..... Passed 2.60 sec +79/80 Test #79: test_search_tblastx_fm_m9.gz ..... Passed 4.40 sec Start 80: test_search_tblastx_fm_sam.bz2 -80/80 Test #80: test_search_tblastx_fm_sam.bz2 ... Passed 4.57 sec +80/80 Test #80: test_search_tblastx_fm_sam.bz2 ... Passed 7.14 sec 100% tests passed, 0 tests failed out of 80 -Total Test time (real) = 118.39 sec +Total Test time (real) = 170.57 sec make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary @@ -2674,7 +2710,7 @@ dh_testroot -O--builddirectory=build dh_prep -O--builddirectory=build dh_auto_install --destdir=debian/lambda-align/ -O--builddirectory=build - cd build && make -j42 install DESTDIR=/build/reproducible-path/lambda-align-1.0.3/debian/lambda-align AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd build && make -j20 install DESTDIR=/build/reproducible-path/lambda-align-1.0.3/debian/lambda-align AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' /usr/bin/cmake -S/build/reproducible-path/lambda-align-1.0.3 -B/build/reproducible-path/lambda-align-1.0.3/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/lambda-align-1.0.3/build/CMakeFiles /build/reproducible-path/lambda-align-1.0.3/build//CMakeFiles/progress.marks @@ -2688,15 +2724,15 @@ cd /build/reproducible-path/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lambda-align-1.0.3 /build/reproducible-path/lambda-align-1.0.3/src /build/reproducible-path/lambda-align-1.0.3/build /build/reproducible-path/lambda-align-1.0.3/build/src /build/reproducible-path/lambda-align-1.0.3/build/src/CMakeFiles/lambda_indexer.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/build -make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' -make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/build make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make[3]: Nothing to be done for 'src/CMakeFiles/lambda_indexer.dir/build'. make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' +[ 50%] Built target lambda_indexer +make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' +make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/build make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make[3]: Nothing to be done for 'src/CMakeFiles/lambda.dir/build'. make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' -[ 50%] Built target lambda_indexer [100%] Built target lambda make[2]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/lambda-align-1.0.3/build/CMakeFiles 0 @@ -2764,12 +2800,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/140049/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/140049/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1881741 and its subdirectories -I: Current time: Sat Jun 7 14:09:01 -12 2025 -I: pbuilder-time-stamp: 1749348541 +I: removing directory /srv/workspace/pbuilder/140049 and its subdirectories +I: Current time: Mon May 6 09:54:15 +14 2024 +I: pbuilder-time-stamp: 1714938855