Diff of the two buildlogs: -- --- b1/build.log 2025-10-27 11:03:08.272373326 +0000 +++ b2/build.log 2025-10-27 11:05:19.396524530 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Nov 29 05:23:43 -12 2026 -I: pbuilder-time-stamp: 1795973023 +I: Current time: Tue Oct 28 01:03:09 +14 2025 +I: pbuilder-time-stamp: 1761562989 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -24,53 +24,85 @@ dpkg-source: info: applying adjust-shenwei356-kmers.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1295221/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3659235/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Oct 27 11:03 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3659235/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3659235/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='012fa9985dfb45a0917f0e92a44bbce5' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1295221' - PS1='# ' - PS2='> ' + INVOCATION_ID=c9eca562d68f49a88c8cd7b88cb7b6b9 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3659235 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.s4NwaciG/pbuilderrc_tqEW --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.s4NwaciG/b1 --logfile b1/build.log golang-github-shenwei356-bio_0.13.8-1.dsc' - SUDO_GID='111' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.s4NwaciG/pbuilderrc_0jji --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.s4NwaciG/b2 --logfile b2/build.log golang-github-shenwei356-bio_0.13.8-1.dsc' + SUDO_GID=110 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos15-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1295221/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3659235/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -225,7 +257,7 @@ Get: 97 http://deb.debian.org/debian unstable/main amd64 golang-github-shenwei356-util-dev all 0.5.5-1 [19.3 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 golang-github-will-rowe-nthash-dev all 0.4.0-1 [5644 B] Get: 99 http://deb.debian.org/debian unstable/main amd64 golang-github-zeebo-wyhash-dev all 0.0.1-3 [23.5 kB] -Fetched 110 MB in 2s (44.8 MB/s) +Fetched 110 MB in 3s (43.5 MB/s) Preconfiguring packages ... Selecting previously unselected package tzdata. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19862 files and directories currently installed.) @@ -558,8 +590,8 @@ Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' -Local time is now: Sun Nov 29 17:25:17 UTC 2026. -Universal Time is now: Sun Nov 29 17:25:17 UTC 2026. +Local time is now: Mon Oct 27 11:04:23 UTC 2025. +Universal Time is now: Mon Oct 27 11:04:23 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up golang-github-cespare-xxhash-dev (2.3.0-1) ... @@ -648,7 +680,11 @@ Solving dependencies... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/reproducible-path/golang-github-shenwei356-bio-0.13.8/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../golang-github-shenwei356-bio_0.13.8-1_source.changes +I: user script /srv/workspace/pbuilder/3659235/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/3659235/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/golang-github-shenwei356-bio-0.13.8/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../golang-github-shenwei356-bio_0.13.8-1_source.changes dpkg-buildpackage: info: source package golang-github-shenwei356-bio dpkg-buildpackage: info: source version 0.13.8-1 dpkg-buildpackage: info: source distribution unstable @@ -666,202 +702,202 @@ dh_autoreconf -O--builddirectory=_build -O--buildsystem=golang dh_auto_configure -O--builddirectory=_build -O--buildsystem=golang dh_auto_build -O--builddirectory=_build -O--buildsystem=golang - cd _build && go install -trimpath -v -p 42 github.com/shenwei356/bio/featio/gtf github.com/shenwei356/bio/seq github.com/shenwei356/bio/seqio/fai github.com/shenwei356/bio/seqio/fastx github.com/shenwei356/bio/sketches github.com/shenwei356/bio/taxdump github.com/shenwei356/bio/util -internal/unsafeheader -internal/nettrace -container/list + cd _build && go install -trimpath -v -p 40 github.com/shenwei356/bio/featio/gtf github.com/shenwei356/bio/seq github.com/shenwei356/bio/seqio/fai github.com/shenwei356/bio/seqio/fastx github.com/shenwei356/bio/sketches github.com/shenwei356/bio/taxdump github.com/shenwei356/bio/util +internal/itoa internal/asan -internal/byteorder +cmp vendor/golang.org/x/crypto/internal/alias -unicode/utf8 -crypto/internal/fips140/alias -unicode github.com/dsnet/compress/bzip2/internal/sais -unicode/utf16 -cmp github.com/klauspost/compress/internal/le -internal/coverage/rtcov -internal/goos -github.com/dsnet/compress/internal -internal/goexperiment -internal/goarch -internal/msan -log/internal +internal/byteorder +unicode/utf8 +container/list internal/profilerecord github.com/ulikunitz/xz/internal/hash +internal/goarch math/bits -internal/itoa -github.com/klauspost/compress/internal/cpuinfo -crypto/internal/boring/sig -vendor/golang.org/x/crypto/cryptobyte/asn1 +internal/unsafeheader +internal/godebugs +internal/goos internal/runtime/atomic -internal/runtime/syscall +unicode/utf16 internal/cpu -internal/godebugs sync/atomic -crypto/internal/fips140/subtle +github.com/dsnet/compress/internal +github.com/klauspost/compress/internal/cpuinfo +internal/msan +internal/runtime/syscall +vendor/golang.org/x/crypto/cryptobyte/asn1 +internal/goexperiment +unicode +internal/nettrace +crypto/internal/boring/sig +internal/coverage/rtcov +crypto/internal/fips140/alias +log/internal internal/runtime/math internal/runtime/sys +internal/abi +crypto/internal/fips140/subtle internal/chacha8rand crypto/internal/fips140deps/byteorder -internal/abi github.com/elliotwutingfeng/asciiset -internal/runtime/exithook crypto/internal/fips140deps/cpu internal/bytealg math -internal/race +internal/runtime/exithook internal/stringslite +internal/race internal/sync internal/runtime/maps github.com/klauspost/compress runtime +internal/reflectlite crypto/subtle iter weak -internal/reflectlite sync maps slices errors sort -internal/bisect internal/singleflight -internal/testlog +internal/bisect unique -runtime/cgo +internal/testlog internal/oserror -path io +path vendor/golang.org/x/net/dns/dnsmessage math/rand/v2 strconv +runtime/cgo syscall internal/godebug -reflect hash -internal/syscall/execenv -crypto/internal/randutil -strings internal/saferio -crypto/internal/fips140deps/godebug -net/netip -internal/syscall/unix -time -math/rand +crypto/internal/randutil bytes +strings crypto hash/crc32 hash/crc64 +net/netip +reflect +crypto/internal/fips140deps/godebug +math/rand vendor/golang.org/x/text/transform github.com/twotwotwo/sorts crypto/internal/impl net/http/internal/ascii bufio -crypto/internal/fips140 github.com/dsnet/compress/internal/errors +crypto/internal/fips140 regexp/syntax -github.com/twotwotwo/sorts/sortutil -github.com/shenwei356/bio/util crypto/tls/internal/fips140tls +crypto/internal/fips140/sha512 crypto/internal/fips140/sha256 crypto/internal/fips140/sha3 -crypto/internal/fips140/sha512 +github.com/shenwei356/bio/util +github.com/twotwotwo/sorts/sortutil github.com/dsnet/compress -internal/fmtsort -encoding/binary -crypto/internal/fips140/hmac +internal/syscall/execenv +internal/syscall/unix +time crypto/sha3 +crypto/internal/fips140/hmac crypto/internal/fips140/check crypto/internal/fips140hash +crypto/internal/fips140/tls12 crypto/internal/fips140/hkdf crypto/internal/fips140/edwards25519/field -crypto/internal/fips140/bigmod -crypto/internal/fips140/tls12 crypto/internal/fips140/aes +crypto/internal/fips140/bigmod crypto/internal/fips140/nistec/fiat -context -io/fs -internal/poll crypto/internal/fips140/tls13 regexp crypto/internal/fips140/edwards25519 +context +io/fs +internal/poll +internal/filepathlite +crypto/internal/fips140/nistec +os +internal/fmtsort +encoding/binary github.com/cespare/xxhash encoding/base64 +github.com/klauspost/compress/internal/snapref github.com/zeebo/wyhash vendor/golang.org/x/crypto/internal/poly1305 -github.com/klauspost/compress/internal/snapref golang.org/x/sys/unix -internal/filepathlite -encoding/pem -os -crypto/internal/fips140/nistec crypto/internal/sysrand -path/filepath -fmt vendor/golang.org/x/sys/cpu +fmt +path/filepath +net +encoding/pem crypto/internal/entropy crypto/internal/fips140/drbg os/exec crypto/internal/fips140only -crypto/internal/fips140/ed25519 crypto/internal/fips140/aes/gcm -crypto/internal/fips140/rsa +crypto/internal/fips140/ed25519 crypto/internal/fips140/mlkem +crypto/internal/fips140/rsa +crypto/internal/fips140/ecdh +crypto/internal/fips140/ecdsa crypto/rc4 crypto/md5 -net -crypto/cipher -encoding/hex log +encoding/hex +runtime/debug github.com/ulikunitz/xz/internal/xlog +net/url mime/quotedprintable +net/http/internal github.com/will-rowe/nthash -github.com/shenwei356/util/byteutil github.com/klauspost/compress/fse -net/url -runtime/debug -vendor/golang.org/x/net/http2/hpack +mime +compress/flate os/user -net/http/internal github.com/dsnet/compress/internal/prefix -compress/flate -mime +github.com/shenwei356/util/byteutil math/big +vendor/golang.org/x/net/http2/hpack vendor/golang.org/x/text/unicode/norm -crypto/internal/boring +crypto/cipher +github.com/shenwei356/bio/seq +vendor/golang.org/x/text/unicode/bidi +github.com/ulikunitz/xz/lzma crypto/des +crypto/internal/boring vendor/golang.org/x/crypto/chacha20 -github.com/edsrzf/mmap-go -github.com/shenwei356/bio/seq -crypto/aes +github.com/klauspost/compress/huff0 crypto/sha256 +crypto/aes +crypto/ecdh crypto/sha512 crypto/hmac crypto/sha1 -github.com/ulikunitz/xz/lzma -github.com/shenwei356/bio/seqio/fai -vendor/golang.org/x/crypto/chacha20poly1305 -vendor/golang.org/x/text/unicode/bidi -crypto/internal/fips140/ecdh -crypto/internal/fips140/ecdsa -github.com/klauspost/compress/huff0 github.com/dsnet/compress/bzip2 -crypto/ecdh +vendor/golang.org/x/crypto/chacha20poly1305 +github.com/shenwei356/bio/sketches compress/gzip github.com/klauspost/compress/flate -github.com/shenwei356/bio/sketches vendor/golang.org/x/text/secure/bidirule vendor/golang.org/x/net/idna github.com/ulikunitz/xz +github.com/edsrzf/mmap-go +crypto/rand crypto/internal/boring/bbig crypto/elliptic -crypto/rand encoding/asn1 crypto/dsa +github.com/shenwei356/bio/seqio/fai crypto/ed25519 -crypto/internal/hpke crypto/rsa +crypto/internal/hpke github.com/klauspost/compress/zstd github.com/klauspost/pgzip crypto/x509/pkix @@ -881,42 +917,42 @@ github.com/shenwei356/bio/seqio/fastx github.com/shenwei356/bio/featio/gtf dh_auto_test -O--builddirectory=_build -O--buildsystem=golang - cd _build && go test -vet=off -v -p 42 github.com/shenwei356/bio/featio/gtf github.com/shenwei356/bio/seq github.com/shenwei356/bio/seqio/fai github.com/shenwei356/bio/seqio/fastx github.com/shenwei356/bio/sketches github.com/shenwei356/bio/taxdump github.com/shenwei356/bio/util + cd _build && go test -vet=off -v -p 40 github.com/shenwei356/bio/featio/gtf github.com/shenwei356/bio/seq github.com/shenwei356/bio/seqio/fai github.com/shenwei356/bio/seqio/fastx github.com/shenwei356/bio/sketches github.com/shenwei356/bio/taxdump github.com/shenwei356/bio/util === RUN TestGTF {140 Twinscan inter 5141 8522 0xc000038540 []} {140 Twinscan inter_CNS 8523 9711 0xc000038560 []} {140 Twinscan inter 9712 13182 0xc000038570 []} {140 Twinscan 3UTR 65149 65487 0xc000038580 []} {140 Twinscan 3UTR 66823 66992 0xc000038590 []} -{140 Twinscan stop_codon 66993 66995 0xc0000385a0 0xc0000123e0 []} -{140 Twinscan CDS 66996 66999 0xc0000385b0 0xc0000123e8 []} +{140 Twinscan stop_codon 66993 66995 0xc0000385a0 0xc0000123f0 []} +{140 Twinscan CDS 66996 66999 0xc0000385b0 0xc0000123f8 []} {140 Twinscan intron_CNS 70103 70151 0xc0000385c0 []} -{140 Twinscan CDS 70207 70294 0xc0000385d0 0xc0000123f0 []} -{140 Twinscan CDS 71696 71807 0xc0000385e0 0xc0000123f8 []} -{140 Twinscan start_codon 71805 71806 0xc0000385f0 0xc000012400 []} -{140 Twinscan start_codon 73222 73222 0xc000038600 0xc000012408 []} -{140 Twinscan CDS 73222 73222 0xc000038610 0xc000012410 []} +{140 Twinscan CDS 70207 70294 0xc0000385d0 0xc000012400 []} +{140 Twinscan CDS 71696 71807 0xc0000385e0 0xc000012408 []} +{140 Twinscan start_codon 71805 71806 0xc0000385f0 0xc000012410 []} +{140 Twinscan start_codon 73222 73222 0xc000038600 0xc000012418 []} +{140 Twinscan CDS 73222 73222 0xc000038610 0xc000012420 []} {140 Twinscan 5UTR 73223 73504 0xc000038620 []} --- PASS: TestGTF (0.00s) === RUN TestGTF2 -{381 Twinscan exon 150 200 0xc000210000 []} -{381 Twinscan exon 300 401 0xc000210020 []} -{381 Twinscan CDS 380 401 0xc000210030 0xc000202020 []} -{381 Twinscan exon 501 650 0xc000210040 []} -{381 Twinscan CDS 501 650 0xc000210050 0xc000202028 []} -{381 Twinscan exon 700 800 0xc000210060 []} -{381 Twinscan CDS 700 707 0xc000210070 0xc000202030 []} -{381 Twinscan exon 900 1000 0xc000210080 []} -{381 Twinscan start_codon 380 382 0xc000210090 0xc000202038 []} -{381 Twinscan stop_codon 708 710 0xc0002100a0 0xc000202040 []} +{381 Twinscan exon 150 200 0xc00021e000 []} +{381 Twinscan exon 300 401 0xc00021e020 []} +{381 Twinscan CDS 380 401 0xc00021e030 0xc000202020 []} +{381 Twinscan exon 501 650 0xc00021e040 []} +{381 Twinscan CDS 501 650 0xc00021e050 0xc000202028 []} +{381 Twinscan exon 700 800 0xc00021e060 []} +{381 Twinscan CDS 700 707 0xc00021e070 0xc000202030 []} +{381 Twinscan exon 900 1000 0xc00021e080 []} +{381 Twinscan start_codon 380 382 0xc00021e090 0xc000202038 []} +{381 Twinscan stop_codon 708 710 0xc00021e0a0 0xc000202040 []} --- PASS: TestGTF2 (0.00s) === RUN TestGTF3 -{NC_002516.2 genbank gene 6261828 6263564 0xc000210110 0xc000202078 []} -{NC_002516.2 genbank CDS 6261828 6263564 0xc000210130 0xc0002020d0 []} -{NC_002516.2 genbank gene 6263805 6264212 0xc000210140 0xc0002020d8 []} -{NC_002516.2 genbank CDS 6263805 6264212 0xc000210150 0xc0002020e0 []} -{NC_002516.2 genbank gene 6264227 6264361 0xc000210160 0xc0002020e8 []} -{NC_002516.2 genbank CDS 6264227 6264361 0xc000210170 0xc0002020f0 []} +{NC_002516.2 genbank gene 6261828 6263564 0xc00021e110 0xc000202078 []} +{NC_002516.2 genbank CDS 6261828 6263564 0xc00021e130 0xc0002020d0 []} +{NC_002516.2 genbank gene 6263805 6264212 0xc00021e140 0xc0002020d8 []} +{NC_002516.2 genbank CDS 6263805 6264212 0xc00021e150 0xc0002020e0 []} +{NC_002516.2 genbank gene 6264227 6264361 0xc00021e160 0xc0002020e8 []} +{NC_002516.2 genbank CDS 6264227 6264361 0xc00021e170 0xc0002020f0 []} --- PASS: TestGTF3 (0.00s) PASS ok github.com/shenwei356/bio/featio/gtf 0.006s @@ -943,39 +979,39 @@ === RUN TestSubSeqInplace --- PASS: TestSubSeqInplace (0.00s) PASS -ok github.com/shenwei356/bio/seq 0.024s +ok github.com/shenwei356/bio/seq 0.022s === RUN TestFastaReader ---- PASS: TestFastaReader (0.01s) +--- PASS: TestFastaReader (0.02s) === RUN TestFastaReaderNotMapWholeFile --- PASS: TestFastaReaderNotMapWholeFile (0.00s) === RUN TestFastaReader2NotMapWholeFile ---- PASS: TestFastaReader2NotMapWholeFile (0.02s) +--- PASS: TestFastaReader2NotMapWholeFile (0.05s) === RUN TestFastaReader2 ---- PASS: TestFastaReader2 (0.02s) +--- PASS: TestFastaReader2 (0.04s) PASS -ok github.com/shenwei356/bio/seqio/fai 0.084s +ok github.com/shenwei356/bio/seqio/fai 1.881s === RUN TestFastaReader2 ---- PASS: TestFastaReader2 (0.01s) +--- PASS: TestFastaReader2 (0.02s) === RUN TestFastaReader3 --- PASS: TestFastaReader3 (0.00s) === RUN TestFastqReadern ---- PASS: TestFastqReadern (0.02s) +--- PASS: TestFastqReadern (0.16s) === RUN TestFastaReader ---- PASS: TestFastaReader (0.02s) +--- PASS: TestFastaReader (0.06s) === RUN TestFastqReader ---- PASS: TestFastqReader (0.01s) +--- PASS: TestFastqReader (0.02s) === RUN TestFastqReader2 ---- PASS: TestFastqReader2 (0.01s) +--- PASS: TestFastqReader2 (0.19s) === RUN TestFastqReader3 ---- PASS: TestFastqReader3 (0.01s) +--- PASS: TestFastqReader3 (0.02s) === RUN TestBlankFile --- PASS: TestBlankFile (0.01s) === RUN TestBlankFile2 ---- PASS: TestBlankFile2 (0.01s) +--- PASS: TestBlankFile2 (0.02s) === RUN TestEmptyFile ---- PASS: TestEmptyFile (0.01s) +--- PASS: TestEmptyFile (0.30s) PASS -ok github.com/shenwei356/bio/seqio/fastx 0.111s +ok github.com/shenwei356/bio/seqio/fastx 2.502s === RUN TestProteinIterator --- PASS: TestProteinIterator (0.00s) === RUN TestKmerIterator @@ -991,15 +1027,15 @@ === RUN TestSyncmer --- PASS: TestSyncmer (0.00s) PASS -ok github.com/shenwei356/bio/sketches 0.022s +ok github.com/shenwei356/bio/sketches 1.707s === RUN TestPackTwoTaxids --- PASS: TestPackTwoTaxids (0.00s) PASS -ok github.com/shenwei356/bio/taxdump 0.005s +ok github.com/shenwei356/bio/taxdump 0.011s === RUN Test --- PASS: Test (0.00s) PASS -ok github.com/shenwei356/bio/util 0.004s +ok github.com/shenwei356/bio/util 0.017s create-stamp debian/debhelper-build-stamp dh_testroot -O--builddirectory=_build -O--buildsystem=golang dh_prep -O--builddirectory=_build -O--buildsystem=golang @@ -1031,12 +1067,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3659235/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3659235/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1295221 and its subdirectories -I: Current time: Sun Nov 29 05:26:07 -12 2026 -I: pbuilder-time-stamp: 1795973167 +I: removing directory /srv/workspace/pbuilder/3659235 and its subdirectories +I: Current time: Tue Oct 28 01:05:19 +14 2025 +I: pbuilder-time-stamp: 1761563119