Diff of the two buildlogs: -- --- b1/build.log 2024-11-12 14:09:55.657594384 +0000 +++ b2/build.log 2024-11-12 14:18:26.259368609 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Dec 15 08:32:10 -12 2025 -I: pbuilder-time-stamp: 1765830730 +I: Current time: Wed Nov 13 04:09:59 +14 2024 +I: pbuilder-time-stamp: 1731420599 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -30,52 +30,84 @@ dpkg-source: info: applying 0004-check-same-tempdir.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3323116/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3378366/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Nov 12 14:10 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3378366/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3378366/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='8e382614734b4f9997c97620b82b4fec' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3323116' - PS1='# ' - PS2='> ' + INVOCATION_ID=2883a14720b24f72a84924dc06a90b59 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3378366 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.B7DRewFj/pbuilderrc_hssZ --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.B7DRewFj/b1 --logfile b1/build.log golang-github-biogo-hts_1.4.5+dfsg1-1.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.B7DRewFj/pbuilderrc_Ax8z --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.B7DRewFj/b2 --logfile b2/build.log golang-github-biogo-hts_1.4.5+dfsg1-1.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos5-amd64 6.10.11+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.10.11-1~bpo12+1 (2024-10-03) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-27-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3323116/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3378366/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -169,7 +201,7 @@ Get: 48 http://deb.debian.org/debian unstable/main amd64 golang-github-kr-pretty-dev all 0.3.1-1 [11.9 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 golang-github-ulikunitz-xz-dev all 0.5.6-2 [352 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 golang-gopkg-check.v1-dev all 0.0+git20200902.038fdea-1 [32.1 kB] -Fetched 75.4 MB in 3s (21.6 MB/s) +Fetched 75.4 MB in 13s (5728 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19969 files and directories currently installed.) @@ -384,7 +416,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/golang-github-biogo-hts-1.4.5+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../golang-github-biogo-hts_1.4.5+dfsg1-1_source.changes +I: user script /srv/workspace/pbuilder/3378366/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/3378366/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/golang-github-biogo-hts-1.4.5+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../golang-github-biogo-hts_1.4.5+dfsg1-1_source.changes dpkg-buildpackage: info: source package golang-github-biogo-hts dpkg-buildpackage: info: source version 1.4.5+dfsg1-1 dpkg-buildpackage: info: source distribution unstable @@ -402,64 +438,64 @@ dh_autoreconf -O--buildsystem=golang dh_auto_configure -O--buildsystem=golang dh_auto_build -O--buildsystem=golang - cd obj-x86_64-linux-gnu && go install -trimpath -v -p 42 github.com/biogo/hts/bam github.com/biogo/hts/bgzf github.com/biogo/hts/bgzf/cache github.com/biogo/hts/bgzf/index github.com/biogo/hts/cram github.com/biogo/hts/cram/encoding/itf8 github.com/biogo/hts/cram/encoding/ltf8 github.com/biogo/hts/csi github.com/biogo/hts/fai github.com/biogo/hts/internal github.com/biogo/hts/sam github.com/biogo/hts/tabix -internal/race -unicode/utf8 + cd obj-x86_64-linux-gnu && go install -trimpath -v -p 20 github.com/biogo/hts/bam github.com/biogo/hts/bgzf github.com/biogo/hts/bgzf/cache github.com/biogo/hts/bgzf/index github.com/biogo/hts/cram github.com/biogo/hts/cram/encoding/itf8 github.com/biogo/hts/cram/encoding/ltf8 github.com/biogo/hts/csi github.com/biogo/hts/fai github.com/biogo/hts/internal github.com/biogo/hts/sam github.com/biogo/hts/tabix +internal/unsafeheader +internal/goarch +math/bits cmp +internal/msan +internal/race +internal/runtime/atomic internal/itoa -math/bits -internal/godebugs -internal/unsafeheader +github.com/ulikunitz/xz/internal/hash +unicode +internal/runtime/syscall sync/atomic -internal/runtime/atomic +internal/asan +unicode/utf8 internal/byteorder -internal/msan -internal/runtime/syscall internal/coverage/rtcov -internal/profilerecord internal/cpu internal/goos -internal/goarch -internal/asan internal/goexperiment -unicode -github.com/ulikunitz/xz/internal/hash -runtime/internal/math +internal/godebugs +internal/profilerecord +github.com/biogo/hts/cram/encoding/itf8 +github.com/biogo/hts/cram/encoding/ltf8 runtime/internal/sys internal/abi +runtime/internal/math internal/chacha8rand -github.com/biogo/hts/cram/encoding/itf8 -github.com/biogo/hts/cram/encoding/ltf8 internal/bytealg -math internal/runtime/exithook +math internal/stringslite runtime -iter internal/reflectlite +iter sync slices -internal/testlog internal/bisect +internal/testlog +internal/godebug errors sort -internal/godebug -internal/oserror -path io +path +internal/oserror strconv syscall -hash bytes strings -container/heap +hash hash/crc32 -reflect +container/heap bufio +reflect compress/bzip2 +time internal/syscall/execenv internal/syscall/unix -time io/fs internal/poll internal/filepathlite @@ -467,11 +503,11 @@ internal/fmtsort encoding/binary fmt +compress/flate encoding/hex +net/url github.com/ulikunitz/xz/internal/xlog encoding/csv -net/url -compress/flate github.com/biogo/hts/fai github.com/ulikunitz/xz/lzma compress/gzip @@ -480,74 +516,74 @@ github.com/biogo/hts/bgzf/cache github.com/biogo/hts/internal github.com/biogo/hts/csi -github.com/biogo/hts/tabix github.com/biogo/hts/sam +github.com/biogo/hts/tabix github.com/biogo/hts/cram github.com/biogo/hts/bam dh_auto_test -O--buildsystem=golang - cd obj-x86_64-linux-gnu && go test -vet=off -v -p 42 github.com/biogo/hts/bam github.com/biogo/hts/bgzf github.com/biogo/hts/bgzf/cache github.com/biogo/hts/bgzf/index github.com/biogo/hts/cram github.com/biogo/hts/cram/encoding/itf8 github.com/biogo/hts/cram/encoding/ltf8 github.com/biogo/hts/csi github.com/biogo/hts/fai github.com/biogo/hts/internal github.com/biogo/hts/sam github.com/biogo/hts/tabix + cd obj-x86_64-linux-gnu && go test -vet=off -v -p 20 github.com/biogo/hts/bam github.com/biogo/hts/bgzf github.com/biogo/hts/bgzf/cache github.com/biogo/hts/bgzf/index github.com/biogo/hts/cram github.com/biogo/hts/cram/encoding/itf8 github.com/biogo/hts/cram/encoding/ltf8 github.com/biogo/hts/csi github.com/biogo/hts/fai github.com/biogo/hts/internal github.com/biogo/hts/sam github.com/biogo/hts/tabix ? github.com/biogo/hts/bgzf/cache [no test files] ? github.com/biogo/hts/cram [no test files] ? github.com/biogo/hts/internal [no test files] === RUN Test OK: 15 passed ---- PASS: Test (0.07s) +--- PASS: Test (0.70s) === RUN TestFuzzCrashers ---- PASS: TestFuzzCrashers (0.89s) +--- PASS: TestFuzzCrashers (5.69s) === RUN TestMerger ---- PASS: TestMerger (0.07s) +--- PASS: TestMerger (0.56s) PASS -ok github.com/biogo/hts/bam 1.033s +ok github.com/biogo/hts/bam 7.272s === RUN TestEmpty --- PASS: TestEmpty (0.00s) === RUN TestEOF --- PASS: TestEOF (0.00s) === RUN TestRoundTrip ---- PASS: TestRoundTrip (0.00s) +--- PASS: TestRoundTrip (0.02s) === RUN TestRoundTripMulti ---- PASS: TestRoundTripMulti (0.00s) +--- PASS: TestRoundTripMulti (0.07s) === RUN TestHeaderIssue57 --- PASS: TestHeaderIssue57 (0.00s) === RUN TestRoundTripMultiSeek ---- PASS: TestRoundTripMultiSeek (0.00s) +--- PASS: TestRoundTripMultiSeek (0.03s) === RUN TestSeekErrorDeadlock --- PASS: TestSeekErrorDeadlock (0.00s) === RUN TestSeekFast ---- PASS: TestSeekFast (0.02s) +--- PASS: TestSeekFast (0.25s) === RUN TestCache ---- PASS: TestCache (0.13s) +--- PASS: TestCache (1.62s) === RUN TestBlocked ---- PASS: TestBlocked (0.00s) +--- PASS: TestBlocked (0.01s) === RUN TestFuzzCrashers ---- PASS: TestFuzzCrashers (0.01s) +--- PASS: TestFuzzCrashers (0.06s) === RUN TestZeroNonZero ---- PASS: TestZeroNonZero (0.00s) +--- PASS: TestZeroNonZero (0.01s) === RUN TestWriteByteCount ---- PASS: TestWriteByteCount (0.00s) +--- PASS: TestWriteByteCount (0.03s) === RUN TestSeekCacheReadahead ---- PASS: TestSeekCacheReadahead (0.10s) +--- PASS: TestSeekCacheReadahead (0.11s) PASS -ok github.com/biogo/hts/bgzf 0.268s +ok github.com/biogo/hts/bgzf 2.280s === RUN Test OK: 3 passed ---- PASS: Test (0.01s) +--- PASS: Test (0.22s) PASS -ok github.com/biogo/hts/bgzf/index 0.016s +ok github.com/biogo/hts/bgzf/index 0.315s === RUN TestRoundTrip --- PASS: TestRoundTrip (0.00s) === RUN TestKnownValues --- PASS: TestKnownValues (0.00s) PASS -ok github.com/biogo/hts/cram/encoding/itf8 0.003s +ok github.com/biogo/hts/cram/encoding/itf8 0.040s === RUN TestInt64RoundTrip --- PASS: TestInt64RoundTrip (0.00s) PASS -ok github.com/biogo/hts/cram/encoding/ltf8 0.003s +ok github.com/biogo/hts/cram/encoding/ltf8 0.040s === RUN Test OK: 3 passed ---- PASS: Test (0.00s) +--- PASS: Test (0.08s) PASS -ok github.com/biogo/hts/csi 0.005s +ok github.com/biogo/hts/csi 0.123s === RUN TestNewIndex --- PASS: TestNewIndex (0.00s) === RUN TestReadFrom @@ -557,21 +593,21 @@ === RUN TestFile --- PASS: TestFile (0.00s) PASS -ok github.com/biogo/hts/fai 0.005s +ok github.com/biogo/hts/fai 0.062s === RUN Test OK: 20 passed ---- PASS: Test (0.00s) +--- PASS: Test (0.21s) === RUN TestSeqAt --- PASS: TestSeqAt (0.00s) === RUN ExampleConsume --- PASS: ExampleConsume (0.00s) PASS -ok github.com/biogo/hts/sam 0.009s +ok github.com/biogo/hts/sam 0.260s === RUN Test OK: 1 passed ---- PASS: Test (0.00s) +--- PASS: Test (0.02s) PASS -ok github.com/biogo/hts/tabix 0.004s +ok github.com/biogo/hts/tabix 0.074s create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=golang dh_prep -O--buildsystem=golang @@ -599,12 +635,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3378366/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3378366/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3323116 and its subdirectories -I: Current time: Mon Dec 15 08:32:54 -12 2025 -I: pbuilder-time-stamp: 1765830774 +I: removing directory /srv/workspace/pbuilder/3378366 and its subdirectories +I: Current time: Wed Nov 13 04:18:25 +14 2024 +I: pbuilder-time-stamp: 1731421105