Diff of the two buildlogs: -- --- b1/build.log 2024-10-19 11:52:17.234875774 +0000 +++ b2/build.log 2024-10-19 11:55:35.063837638 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Oct 18 23:42:04 -12 2024 -I: pbuilder-time-stamp: 1729338124 +I: Current time: Sat Nov 22 08:15:20 +14 2025 +I: pbuilder-time-stamp: 1763748920 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -30,52 +30,84 @@ dpkg-source: info: applying python3.12.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/962891/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1467144/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Nov 21 18:15 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1467144/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1467144/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='4785061108f549529b9779131cbea5d0' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='962891' - PS1='# ' - PS2='> ' + INVOCATION_ID=e54a56af27d44e3398e55e255c91689c + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1467144 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.GpT6bc8S/pbuilderrc_1su8 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.GpT6bc8S/b1 --logfile b1/build.log flye_2.9.5+dfsg-1.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.GpT6bc8S/pbuilderrc_3qnU --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.GpT6bc8S/b2 --logfile b2/build.log flye_2.9.5+dfsg-1.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos1-amd64 6.1.0-26-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.112-1 (2024-09-30) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.10.11+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.10.11-1~bpo12+1 (2024-10-03) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/962891/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1467144/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -213,7 +245,7 @@ Get: 86 http://deb.debian.org/debian unstable/main amd64 libminimap2-dev amd64 2.27+dfsg-1+b1 [130 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 libncurses6 amd64 6.5-2 [104 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 samtools amd64 1.20-3 [653 kB] -Fetched 33.4 MB in 2s (15.4 MB/s) +Fetched 33.4 MB in 0s (77.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19944 files and directories currently installed.) @@ -517,8 +549,8 @@ Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' -Local time is now: Sat Oct 19 11:44:09 UTC 2024. -Universal Time is now: Sat Oct 19 11:44:09 UTC 2024. +Local time is now: Fri Nov 21 18:16:57 UTC 2025. +Universal Time is now: Fri Nov 21 18:16:57 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... @@ -594,7 +626,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/flye-2.9.5+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../flye_2.9.5+dfsg-1_source.changes +I: user script /srv/workspace/pbuilder/1467144/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/1467144/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/flye-2.9.5+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../flye_2.9.5+dfsg-1_source.changes dpkg-buildpackage: info: source package flye dpkg-buildpackage: info: source version 2.9.5+dfsg-1 dpkg-buildpackage: info: source distribution unstable @@ -629,69 +665,69 @@ running build running build_py creating /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye +copying flye/main.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye copying flye/__build__.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye -copying flye/__version__.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye copying flye/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye -copying flye/main.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye +copying flye/__version__.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye creating /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/assembly +copying flye/assembly/scaffolder.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/assembly copying flye/assembly/assemble.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/assembly copying flye/assembly/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/assembly -copying flye/assembly/scaffolder.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/assembly copying flye/assembly/repeat_graph.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/assembly creating /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config copying flye/config/configurator.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config -copying flye/config/py_cfg.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config copying flye/config/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config +copying flye/config/py_cfg.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config creating /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/polishing +copying flye/polishing/polish.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/polishing copying flye/polishing/bubbles.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/polishing -copying flye/polishing/alignment.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/polishing copying flye/polishing/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/polishing +copying flye/polishing/alignment.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/polishing copying flye/polishing/consensus.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/polishing -copying flye/polishing/polish.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/polishing creating /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/utils -copying flye/utils/fasta_parser.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/utils +copying flye/utils/sam_parser.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/utils copying flye/utils/bytes2human.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/utils -copying flye/utils/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/utils copying flye/utils/utils.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/utils -copying flye/utils/sam_parser.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/utils +copying flye/utils/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/utils +copying flye/utils/fasta_parser.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/utils creating /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/repeat_graph copying flye/repeat_graph/graph_alignment.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/repeat_graph copying flye/repeat_graph/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/repeat_graph copying flye/repeat_graph/repeat_graph.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/repeat_graph creating /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/short_plasmids copying flye/short_plasmids/unmapped_reads.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/short_plasmids -copying flye/short_plasmids/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/short_plasmids -copying flye/short_plasmids/plasmids.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/short_plasmids copying flye/short_plasmids/circular_sequences.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/short_plasmids copying flye/short_plasmids/utils.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/short_plasmids +copying flye/short_plasmids/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/short_plasmids +copying flye/short_plasmids/plasmids.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/short_plasmids creating /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/trestle -copying flye/trestle/trestle_config.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/trestle -copying flye/trestle/divergence.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/trestle -copying flye/trestle/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/trestle copying flye/trestle/trestle.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/trestle copying flye/trestle/graph_resolver.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/trestle +copying flye/trestle/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/trestle +copying flye/trestle/trestle_config.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/trestle +copying flye/trestle/divergence.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/trestle creating /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/tests -copying flye/tests/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/tests copying flye/tests/test_toy.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/tests +copying flye/tests/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/tests creating /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg +copying flye/config/bin_cfg/nano_r94_substitutions.mat -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg copying flye/config/bin_cfg/pacbio_substitutions.mat -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg -copying flye/config/bin_cfg/asm_corrected_reads.cfg -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg -copying flye/config/bin_cfg/nano_r94_homopolymers.mat -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg copying flye/config/bin_cfg/asm_subasm.cfg -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg -copying flye/config/bin_cfg/nano_r94_substitutions.mat -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg copying flye/config/bin_cfg/pacbio_chm13_homopolymers.mat -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg copying flye/config/bin_cfg/asm_hifi.cfg -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg -copying flye/config/bin_cfg/asm_nano_hq.cfg -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg +copying flye/config/bin_cfg/nano_r94_g36_homopolymers.mat -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg copying flye/config/bin_cfg/asm_defaults.cfg -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg +copying flye/config/bin_cfg/nano_r94_homopolymers.mat -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg copying flye/config/bin_cfg/pacbio_homopolymers.mat -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg -copying flye/config/bin_cfg/nano_r94_g36_homopolymers.mat -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg -copying flye/config/bin_cfg/nano_r94_g36_substitutions.mat -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg copying flye/config/bin_cfg/asm_raw_reads.cfg -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg copying flye/config/bin_cfg/pacbio_chm13_substitutions.mat -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg +copying flye/config/bin_cfg/nano_r94_g36_substitutions.mat -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg +copying flye/config/bin_cfg/asm_corrected_reads.cfg -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg +copying flye/config/bin_cfg/asm_nano_hq.cfg -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg creating /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/tests/data -copying flye/tests/data/ecoli_500kb_reads_hifi.fastq.gz -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/tests/data -copying flye/tests/data/ecoli_500kb_reads.fastq.gz -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/tests/data copying flye/tests/data/ecoli_500kb.fasta -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/tests/data +copying flye/tests/data/ecoli_500kb_reads.fastq.gz -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/tests/data +copying flye/tests/data/ecoli_500kb_reads_hifi.fastq.gz -> /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/tests/data /build/reproducible-path/flye-2.9.5+dfsg/setup.py:35: DeprecationWarning: Use shutil.which instead of find_executable if not find_executable("make"): make[1]: Entering directory '/build/reproducible-path/flye-2.9.5+dfsg' @@ -708,7 +744,8 @@ 214 | Logger::get().debug() << "Build date: " << __DATE__ << " " << __TIME__; | ^~~~~~~~ In file included from assemble/../sequence/overlap.h:12, - from assemble/main_assemble.cpp:14: + from assemble/chimera.h:7, + from assemble/chimera.cpp:14: /build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree/IntervalTree.h:59:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 59 | IntervalTree(void) | ^ @@ -722,8 +759,8 @@ | ^~~~~~~~~~~~~~ /build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree/IntervalTree.h:91:13: note: remove the ‘< >’ In file included from assemble/../sequence/overlap.h:12, - from assemble/chimera.h:7, - from assemble/chimera.cpp:14: + from assemble/extender.h:10, + from assemble/extender.cpp:14: /build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree/IntervalTree.h:59:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 59 | IntervalTree(void) | ^ @@ -737,8 +774,7 @@ | ^~~~~~~~~~~~~~ /build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree/IntervalTree.h:91:13: note: remove the ‘< >’ In file included from assemble/../sequence/overlap.h:12, - from assemble/extender.h:10, - from assemble/extender.cpp:14: + from assemble/main_assemble.cpp:14: /build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree/IntervalTree.h:59:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] 59 | IntervalTree(void) | ^ @@ -925,8 +961,6 @@ /build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree/IntervalTree.h:91:13: note: remove the ‘< >’ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -ffile-prefix-map=/build/reproducible-path/flye-2.9.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/build/reproducible-path/flye-2.9.5+dfsg/lib/libcuckoo -I/build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree -I/build/reproducible-path/flye-2.9.5+dfsg/lib/lemon -Wall -Wextra -pthread -std=c++11 -g -Wno-missing-field-initializers -O3 -DNDEBUG repeat_graph/multiplicity_inferer.cpp -o repeat_graph/multiplicity_inferer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -ffile-prefix-map=/build/reproducible-path/flye-2.9.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/build/reproducible-path/flye-2.9.5+dfsg/lib/libcuckoo -I/build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree -I/build/reproducible-path/flye-2.9.5+dfsg/lib/lemon -Wall -Wextra -pthread -std=c++11 -g -Wno-missing-field-initializers -O3 -DNDEBUG repeat_graph/output_generator.cpp -o repeat_graph/output_generator.o -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -ffile-prefix-map=/build/reproducible-path/flye-2.9.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/build/reproducible-path/flye-2.9.5+dfsg/lib/libcuckoo -I/build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree -I/build/reproducible-path/flye-2.9.5+dfsg/lib/lemon -Wall -Wextra -pthread -std=c++11 -g -Wno-missing-field-initializers -O3 -DNDEBUG repeat_graph/read_aligner.cpp -o repeat_graph/read_aligner.o -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -ffile-prefix-map=/build/reproducible-path/flye-2.9.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/build/reproducible-path/flye-2.9.5+dfsg/lib/libcuckoo -I/build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree -I/build/reproducible-path/flye-2.9.5+dfsg/lib/lemon -Wall -Wextra -pthread -std=c++11 -g -Wno-missing-field-initializers -O3 -DNDEBUG repeat_graph/repeat_graph.cpp -o repeat_graph/repeat_graph.o In file included from repeat_graph/../sequence/overlap.h:12, from repeat_graph/repeat_graph.h:11, from repeat_graph/multiplicity_inferer.h:7, @@ -943,6 +977,7 @@ 91 | intervalVector& ivals, | ^~~~~~~~~~~~~~ /build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree/IntervalTree.h:91:13: note: remove the ‘< >’ +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -ffile-prefix-map=/build/reproducible-path/flye-2.9.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/build/reproducible-path/flye-2.9.5+dfsg/lib/libcuckoo -I/build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree -I/build/reproducible-path/flye-2.9.5+dfsg/lib/lemon -Wall -Wextra -pthread -std=c++11 -g -Wno-missing-field-initializers -O3 -DNDEBUG repeat_graph/read_aligner.cpp -o repeat_graph/read_aligner.o In file included from repeat_graph/../sequence/overlap.h:12, from repeat_graph/repeat_graph.h:11, from repeat_graph/output_generator.h:13, @@ -975,6 +1010,7 @@ 91 | intervalVector& ivals, | ^~~~~~~~~~~~~~ /build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree/IntervalTree.h:91:13: note: remove the ‘< >’ +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -ffile-prefix-map=/build/reproducible-path/flye-2.9.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/build/reproducible-path/flye-2.9.5+dfsg/lib/libcuckoo -I/build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree -I/build/reproducible-path/flye-2.9.5+dfsg/lib/lemon -Wall -Wextra -pthread -std=c++11 -g -Wno-missing-field-initializers -O3 -DNDEBUG repeat_graph/repeat_graph.cpp -o repeat_graph/repeat_graph.o In file included from repeat_graph/../sequence/overlap.h:12, from repeat_graph/repeat_graph.cpp:9: /build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree/IntervalTree.h:59:22: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] @@ -1007,13 +1043,6 @@ | ^~~~~~~~~~~~~~ /build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree/IntervalTree.h:91:13: note: remove the ‘< >’ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -ffile-prefix-map=/build/reproducible-path/flye-2.9.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/build/reproducible-path/flye-2.9.5+dfsg/lib/libcuckoo -I/build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree -I/build/reproducible-path/flye-2.9.5+dfsg/lib/lemon -Wall -Wextra -pthread -std=c++11 -g -Wno-missing-field-initializers -O3 -DNDEBUG contigger/contig_extender.cpp -o contigger/contig_extender.o -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -ffile-prefix-map=/build/reproducible-path/flye-2.9.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/build/reproducible-path/flye-2.9.5+dfsg/lib/libcuckoo -I/build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree -I/build/reproducible-path/flye-2.9.5+dfsg/lib/lemon -Wall -Wextra -pthread -std=c++11 -g -Wno-missing-field-initializers -O3 -DNDEBUG contigger/main_contigger.cpp -o contigger/main_contigger.o -contigger/main_contigger.cpp:159:52: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 159 | Logger::get().debug() << "Build date: " << __DATE__ << " " << __TIME__; - | ^~~~~~~~ -contigger/main_contigger.cpp:159:71: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 159 | Logger::get().debug() << "Build date: " << __DATE__ << " " << __TIME__; - | ^~~~~~~~ In file included from contigger/../repeat_graph/../sequence/overlap.h:12, from contigger/../repeat_graph/repeat_graph.h:11, from contigger/contig_extender.h:7, @@ -1030,6 +1059,13 @@ 91 | intervalVector& ivals, | ^~~~~~~~~~~~~~ /build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree/IntervalTree.h:91:13: note: remove the ‘< >’ +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -c -g -O2 -ffile-prefix-map=/build/reproducible-path/flye-2.9.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -I/build/reproducible-path/flye-2.9.5+dfsg/lib/libcuckoo -I/build/reproducible-path/flye-2.9.5+dfsg/lib/interval_tree -I/build/reproducible-path/flye-2.9.5+dfsg/lib/lemon -Wall -Wextra -pthread -std=c++11 -g -Wno-missing-field-initializers -O3 -DNDEBUG contigger/main_contigger.cpp -o contigger/main_contigger.o +contigger/main_contigger.cpp:159:52: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 159 | Logger::get().debug() << "Build date: " << __DATE__ << " " << __TIME__; + | ^~~~~~~~ +contigger/main_contigger.cpp:159:71: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 159 | Logger::get().debug() << "Build date: " << __DATE__ << " " << __TIME__; + | ^~~~~~~~ In file included from contigger/../repeat_graph/../sequence/overlap.h:12, from contigger/../repeat_graph/repeat_graph.h:11, from contigger/main_contigger.cpp:18: @@ -1109,121 +1145,121 @@ creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12 creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye +creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/polishing +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/polishing/polish.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/polishing +creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/polishing/__pycache__ +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/polishing/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/polishing/__pycache__ +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/polishing/bubbles.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/polishing +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/polishing/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/polishing +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/polishing/alignment.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/polishing +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/polishing/consensus.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/polishing +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/main.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye +creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/utils +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/utils/sam_parser.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/utils +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/utils/bytes2human.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/utils +creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/utils/__pycache__ +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/utils/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/utils/__pycache__ +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/utils/utils.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/utils +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/utils/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/utils +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/utils/fasta_parser.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/utils +creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/tests +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/tests/test_toy.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/tests +creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/tests/__pycache__ +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/tests/__pycache__/test_toy.cpython-312.pyc -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/tests/__pycache__ +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/tests/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/tests/__pycache__ +creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/tests/data +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/tests/data/ecoli_500kb.fasta -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/tests/data +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/tests/data/ecoli_500kb_reads.fastq.gz -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/tests/data +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/tests/data/ecoli_500kb_reads_hifi.fastq.gz -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/tests/data +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/tests/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/tests +creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/__pycache__ +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/__pycache__ +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/__build__.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/trestle +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/trestle/trestle.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/trestle creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/trestle/__pycache__ copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/trestle/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/trestle/__pycache__ +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/trestle/graph_resolver.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/trestle +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/trestle/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/trestle copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/trestle/trestle_config.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/trestle copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/trestle/divergence.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/trestle -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/trestle/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/trestle -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/trestle/trestle.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/trestle -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/trestle/graph_resolver.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/trestle -creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/__pycache__ -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/__pycache__ creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/assembly +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/assembly/scaffolder.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/assembly creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/assembly/__pycache__ copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/assembly/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/assembly/__pycache__ copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/assembly/assemble.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/assembly copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/assembly/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/assembly -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/assembly/scaffolder.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/assembly copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/assembly/repeat_graph.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/assembly -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/__build__.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye -creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/utils -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/utils/fasta_parser.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/utils -creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/utils/__pycache__ -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/utils/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/utils/__pycache__ -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/utils/bytes2human.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/utils -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/utils/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/utils -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/utils/utils.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/utils -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/utils/sam_parser.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/utils -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/__version__.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/short_plasmids +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/short_plasmids/unmapped_reads.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/short_plasmids creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/short_plasmids/__pycache__ copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/short_plasmids/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/short_plasmids/__pycache__ -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/short_plasmids/unmapped_reads.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/short_plasmids -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/short_plasmids/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/short_plasmids -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/short_plasmids/plasmids.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/short_plasmids copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/short_plasmids/circular_sequences.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/short_plasmids copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/short_plasmids/utils.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/short_plasmids +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/short_plasmids/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/short_plasmids +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/short_plasmids/plasmids.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/short_plasmids +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config/__pycache__ copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config/__pycache__ copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/configurator.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/py_cfg.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config/bin_cfg +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg/nano_r94_substitutions.mat -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config/bin_cfg copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg/pacbio_substitutions.mat -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config/bin_cfg -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg/asm_corrected_reads.cfg -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config/bin_cfg -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg/nano_r94_homopolymers.mat -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config/bin_cfg copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg/asm_subasm.cfg -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config/bin_cfg -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg/nano_r94_substitutions.mat -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config/bin_cfg copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg/pacbio_chm13_homopolymers.mat -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config/bin_cfg copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg/asm_hifi.cfg -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config/bin_cfg -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg/asm_nano_hq.cfg -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config/bin_cfg +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg/nano_r94_g36_homopolymers.mat -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config/bin_cfg copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg/asm_defaults.cfg -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config/bin_cfg +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg/nano_r94_homopolymers.mat -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config/bin_cfg copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg/pacbio_homopolymers.mat -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config/bin_cfg -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg/nano_r94_g36_homopolymers.mat -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config/bin_cfg -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg/nano_r94_g36_substitutions.mat -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config/bin_cfg copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg/asm_raw_reads.cfg -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config/bin_cfg copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg/pacbio_chm13_substitutions.mat -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config/bin_cfg -creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/tests -creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/tests/__pycache__ -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/tests/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/tests/__pycache__ -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/tests/__pycache__/test_toy.cpython-312.pyc -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/tests/__pycache__ -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/tests/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/tests -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/tests/test_toy.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/tests -creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/tests/data -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/tests/data/ecoli_500kb_reads_hifi.fastq.gz -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/tests/data -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/tests/data/ecoli_500kb_reads.fastq.gz -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/tests/data -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/tests/data/ecoli_500kb.fasta -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/tests/data -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/main.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye -creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/polishing -creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/polishing/__pycache__ -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/polishing/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/polishing/__pycache__ -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/polishing/bubbles.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/polishing -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/polishing/alignment.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/polishing -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/polishing/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/polishing -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/polishing/consensus.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/polishing -copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/polishing/polish.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/polishing +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg/nano_r94_g36_substitutions.mat -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config/bin_cfg +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg/asm_corrected_reads.cfg -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config/bin_cfg +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/bin_cfg/asm_nano_hq.cfg -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config/bin_cfg +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/config/py_cfg.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config +copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/__version__.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/repeat_graph creating /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/repeat_graph/__pycache__ copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/repeat_graph/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/repeat_graph/__pycache__ copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/repeat_graph/graph_alignment.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/repeat_graph copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/repeat_graph/__init__.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/repeat_graph copying /build/reproducible-path/flye-2.9.5+dfsg/.pybuild/cpython3_3.12/build/flye/repeat_graph/repeat_graph.py -> /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/repeat_graph -byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/trestle/trestle_config.py to trestle_config.cpython-312.pyc -byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/trestle/divergence.py to divergence.cpython-312.pyc -byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/trestle/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/polishing/polish.py to polish.cpython-312.pyc +byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/polishing/bubbles.py to bubbles.cpython-312.pyc +byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/polishing/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/polishing/alignment.py to alignment.cpython-312.pyc +byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/polishing/consensus.py to consensus.cpython-312.pyc +byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/main.py to main.cpython-312.pyc +byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/utils/sam_parser.py to sam_parser.cpython-312.pyc +byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/utils/bytes2human.py to bytes2human.cpython-312.pyc +byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/utils/utils.py to utils.cpython-312.pyc +byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/utils/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/utils/fasta_parser.py to fasta_parser.cpython-312.pyc +byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/tests/test_toy.py to test_toy.cpython-312.pyc +byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/tests/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/__build__.py to __build__.cpython-312.pyc byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/trestle/trestle.py to trestle.cpython-312.pyc byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/trestle/graph_resolver.py to graph_resolver.cpython-312.pyc +byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/trestle/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/trestle/trestle_config.py to trestle_config.cpython-312.pyc +byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/trestle/divergence.py to divergence.cpython-312.pyc +byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/assembly/scaffolder.py to scaffolder.cpython-312.pyc byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/assembly/assemble.py to assemble.cpython-312.pyc byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/assembly/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/assembly/scaffolder.py to scaffolder.cpython-312.pyc byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/assembly/repeat_graph.py to repeat_graph.cpython-312.pyc -byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/__build__.py to __build__.cpython-312.pyc -byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/utils/fasta_parser.py to fasta_parser.cpython-312.pyc -byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/utils/bytes2human.py to bytes2human.cpython-312.pyc -byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/utils/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/utils/utils.py to utils.cpython-312.pyc -byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/utils/sam_parser.py to sam_parser.cpython-312.pyc -byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/__version__.py to __version__.cpython-312.pyc -byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/short_plasmids/unmapped_reads.py to unmapped_reads.cpython-312.pyc -byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/short_plasmids/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/short_plasmids/plasmids.py to plasmids.cpython-312.pyc byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/short_plasmids/circular_sequences.py to circular_sequences.cpython-312.pyc byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/short_plasmids/utils.py to utils.cpython-312.pyc +byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/short_plasmids/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/short_plasmids/plasmids.py to plasmids.cpython-312.pyc +byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config/configurator.py to configurator.cpython-312.pyc -byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config/py_cfg.py to py_cfg.cpython-312.pyc byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/tests/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/tests/test_toy.py to test_toy.cpython-312.pyc -byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/main.py to main.cpython-312.pyc -byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/polishing/bubbles.py to bubbles.cpython-312.pyc -byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/polishing/alignment.py to alignment.cpython-312.pyc -byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/polishing/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/polishing/consensus.py to consensus.cpython-312.pyc -byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/polishing/polish.py to polish.cpython-312.pyc +byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/config/py_cfg.py to py_cfg.cpython-312.pyc +byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/__version__.py to __version__.cpython-312.pyc byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/repeat_graph/graph_alignment.py to graph_alignment.cpython-312.pyc byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/repeat_graph/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/flye-2.9.5+dfsg/debian/flye/usr/lib/python3.12/dist-packages/flye/repeat_graph/repeat_graph.py to repeat_graph.cpython-312.pyc @@ -1267,8 +1303,8 @@ dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild -dpkg-deb: building package 'flye-dbgsym' in '../flye-dbgsym_2.9.5+dfsg-1_amd64.deb'. dpkg-deb: building package 'flye' in '../flye_2.9.5+dfsg-1_amd64.deb'. +dpkg-deb: building package 'flye-dbgsym' in '../flye-dbgsym_2.9.5+dfsg-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../flye_2.9.5+dfsg-1_amd64.buildinfo dpkg-genchanges --build=binary -O../flye_2.9.5+dfsg-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1276,12 +1312,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1467144/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1467144/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/962891 and its subdirectories -I: Current time: Fri Oct 18 23:52:16 -12 2024 -I: pbuilder-time-stamp: 1729338736 +I: removing directory /srv/workspace/pbuilder/1467144 and its subdirectories +I: Current time: Sat Nov 22 08:18:34 +14 2025 +I: pbuilder-time-stamp: 1763749114