Diff of the two buildlogs: -- --- b1/build.log 2024-12-15 00:12:20.894720097 +0000 +++ b2/build.log 2024-12-15 00:15:35.857805867 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Dec 14 12:08:48 -12 2024 -I: pbuilder-time-stamp: 1734221328 +I: Current time: Sat Jan 17 20:35:24 +14 2026 +I: pbuilder-time-stamp: 1768631724 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -34,52 +34,84 @@ dpkg-source: info: applying sync_instead_of_atomic I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1417508/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1334864/tmp/hooks/D01_modify_environment starting +debug: Running on ionos5-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jan 17 06:36 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1334864/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1334864/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='62e36962b59047499f9b5be0fb9baf31' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1417508' - PS1='# ' - PS2='> ' + INVOCATION_ID=72c0c2540f7f4f9085fb156d76612a70 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1334864 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.GdOwgkHz/pbuilderrc_oJVQ --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.GdOwgkHz/b1 --logfile b1/build.log fermi-lite_0.1+git20221215.85f159e-1.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.GdOwgkHz/pbuilderrc_nlpP --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.GdOwgkHz/b2 --logfile b2/build.log fermi-lite_0.1+git20221215.85f159e-1.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos11-amd64 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1417508/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1334864/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -157,7 +189,7 @@ Get: 32 http://deb.debian.org/debian unstable/main amd64 help2man amd64 1.49.3 [198 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libsimde-dev all 0.8.2-2 [467 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] -Fetched 21.4 MB in 1s (22.5 MB/s) +Fetched 21.4 MB in 5s (4531 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19965 files and directories currently installed.) @@ -308,7 +340,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/fermi-lite-0.1+git20221215.85f159e/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../fermi-lite_0.1+git20221215.85f159e-1_source.changes +I: user script /srv/workspace/pbuilder/1334864/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/1334864/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/fermi-lite-0.1+git20221215.85f159e/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../fermi-lite_0.1+git20221215.85f159e-1_source.changes dpkg-buildpackage: info: source package fermi-lite dpkg-buildpackage: info: source version 0.1+git20221215.85f159e-1 dpkg-buildpackage: info: source distribution unstable @@ -320,7 +356,7 @@ debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/fermi-lite-0.1+git20221215.85f159e' dh_auto_clean - make -j20 clean + make -j42 clean make[2]: Entering directory '/build/reproducible-path/fermi-lite-0.1+git20221215.85f159e' rm -fr gmon.out *.o ext/*.o a.out fml-asm *~ *.a *.dSYM session* make[2]: Leaving directory '/build/reproducible-path/fermi-lite-0.1+git20221215.85f159e' @@ -333,7 +369,7 @@ dh_autoreconf dh_auto_configure dh_auto_build - make -j20 "INSTALL=install --strip-program=true" + make -j42 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/fermi-lite-0.1+git20221215.85f159e' cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20221215.85f159e=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kthread.o kthread.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20221215.85f159e=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o misc.o misc.c @@ -349,14 +385,18 @@ cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20221215.85f159e=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bubble.o bubble.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20221215.85f159e=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ksw.o ksw.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20221215.85f159e=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -c -o example.o example.c -misc.c: In function 'fml_utg_print': -misc.c:217:19: warning: variable 'l' set but not used [-Wunused-but-set-variable] - 217 | int i, j, l; - | ^ bfc.c: In function 'bfc_kmer_insert': bfc.c:54:24: warning: variable 'hash' set but not used [-Wunused-but-set-variable] 54 | uint64_t y[2], hash; | ^~~~ +misc.c: In function 'fml_utg_print': +misc.c:217:19: warning: variable 'l' set but not used [-Wunused-but-set-variable] + 217 | int i, j, l; + | ^ +unitig.c: In function 'unitig1': +unitig.c:325:23: warning: variable 'ret' set but not used [-Wunused-but-set-variable] + 325 | int seed_len, ret, is_loop, contained; + | ^~~ rld0.c: In function 'rld_restore': rld0.c:298:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 298 | fread(e->z[i], 8, RLD_LSIZE, fp); @@ -380,13 +420,9 @@ rld0.c:262:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 262 | fread(e->mcnt + 1, 8, e->asize, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -unitig.c: In function 'unitig1': -unitig.c:325:23: warning: variable 'ret' set but not used [-Wunused-but-set-variable] - 325 | int seed_len, ret, is_loop, contained; - | ^~~ ar -csru libfml.a kthread.o misc.o bseq.o htab.o bfc.o rle.o rope.o mrope.o rld0.o unitig.o mag.o bubble.o ksw.o -ar: cc -Wl,-z,relro -Wl,-z,now -shared -o libfml.so.0 kthread.o misc.o bseq.o htab.o bfc.o rle.o rope.o mrope.o rld0.o unitig.o mag.o bubble.o ksw.o -fPIC -Wl,-soname,libfml.so.0 -lm -lz -lpthread -`u' modifier ignored since `D' is the default (see `U') +cc -Wl,-z,relro -Wl,-z,now -shared -o libfml.so.0 kthread.o misc.o bseq.o htab.o bfc.o rle.o rope.o mrope.o rld0.o unitig.o mag.o bubble.o ksw.o -fPIC -Wl,-soname,libfml.so.0 -lm -lz -lpthread +ar: `u' modifier ignored since `D' is the default (see `U') cc -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/fermi-lite-0.1+git20221215.85f159e=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -g -Wall -O2 -fPIC libfml.a example.o -o fml-asm -L. -lfml -lm -lz -lpthread make[1]: Leaving directory '/build/reproducible-path/fermi-lite-0.1+git20221215.85f159e' debian/rules override_dh_auto_test @@ -441,11 +477,11 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'fml-asm' in '../fml-asm_0.1+git20221215.85f159e-1_amd64.deb'. +dpkg-deb: building package 'fml-asm-dbgsym' in '../fml-asm-dbgsym_0.1+git20221215.85f159e-1_amd64.deb'. dpkg-deb: building package 'libfml0' in '../libfml0_0.1+git20221215.85f159e-1_amd64.deb'. -dpkg-deb: building package 'libfml-dev' in '../libfml-dev_0.1+git20221215.85f159e-1_amd64.deb'. dpkg-deb: building package 'libfml0-dbgsym' in '../libfml0-dbgsym_0.1+git20221215.85f159e-1_amd64.deb'. -dpkg-deb: building package 'fml-asm-dbgsym' in '../fml-asm-dbgsym_0.1+git20221215.85f159e-1_amd64.deb'. +dpkg-deb: building package 'libfml-dev' in '../libfml-dev_0.1+git20221215.85f159e-1_amd64.deb'. +dpkg-deb: building package 'fml-asm' in '../fml-asm_0.1+git20221215.85f159e-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../fermi-lite_0.1+git20221215.85f159e-1_amd64.buildinfo dpkg-genchanges --build=binary -O../fermi-lite_0.1+git20221215.85f159e-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -453,12 +489,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1334864/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1334864/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1417508 and its subdirectories -I: Current time: Sat Dec 14 12:12:20 -12 2024 -I: pbuilder-time-stamp: 1734221540 +I: removing directory /srv/workspace/pbuilder/1334864 and its subdirectories +I: Current time: Sat Jan 17 20:38:35 +14 2026 +I: pbuilder-time-stamp: 1768631915