Diff of the two buildlogs: -- --- b1/build.log 2024-08-20 08:12:20.742135934 +0000 +++ b2/build.log 2024-08-20 08:16:12.324290505 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Sep 22 02:34:40 -12 2025 -I: pbuilder-time-stamp: 1758551680 +I: Current time: Tue Aug 20 22:12:23 +14 2024 +I: pbuilder-time-stamp: 1724141543 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -34,52 +34,84 @@ dpkg-source: info: applying gcc-14.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2705120/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/26120/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Aug 20 08:12 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/26120/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/26120/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='4b3d8429bc6543c6bec4e45a40ceea5e' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2705120' - PS1='# ' - PS2='> ' + INVOCATION_ID=aecb07b4c0974dc3b87b8be1af3d02a8 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=26120 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.zCWisi6Z/pbuilderrc_Q62n --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.zCWisi6Z/b1 --logfile b1/build.log daligner_1.0+git20240119.335105d-3.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.zCWisi6Z/pbuilderrc_CuH2 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.zCWisi6Z/b2 --logfile b2/build.log daligner_1.0+git20240119.335105d-3.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos15-amd64 6.9.7+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.9.7-1~bpo12+1 (2024-07-03) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-23-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.99-1 (2024-07-15) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2705120/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/26120/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -144,7 +176,7 @@ Get: 27 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.19 [916 kB] -Fetched 19.8 MB in 0s (138 MB/s) +Fetched 19.8 MB in 1s (19.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19731 files and directories currently installed.) @@ -275,7 +307,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/daligner-1.0+git20240119.335105d/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../daligner_1.0+git20240119.335105d-3_source.changes +I: user script /srv/workspace/pbuilder/26120/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/26120/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/daligner-1.0+git20240119.335105d/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../daligner_1.0+git20240119.335105d-3_source.changes dpkg-buildpackage: info: source package daligner dpkg-buildpackage: info: source version 1.0+git20240119.335105d-3 dpkg-buildpackage: info: source distribution unstable @@ -285,7 +321,7 @@ debian/rules clean dh clean dh_auto_clean - make -j42 clean + make -j20 clean make[1]: Entering directory '/build/reproducible-path/daligner-1.0+git20240119.335105d' rm -f daligner HPC.daligner LAsort LAmerge LAsplit LAcat LAshow LA2ONE LAcheck ONE2LA rm -fr *.dSYM @@ -298,7 +334,7 @@ dh_autoreconf dh_auto_configure dh_auto_build - make -j42 "INSTALL=install --strip-program=true" + make -j20 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/daligner-1.0+git20240119.335105d' cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/daligner-1.0+git20240119.335105d=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -o daligner daligner.c filter.c lsd.sort.c align.c DB.c QV.c -lpthread -lm -Wl,-z,relro -Wl,-z,now cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/daligner-1.0+git20240119.335105d=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -o HPC.daligner HPC.daligner.c DB.c QV.c -lm -Wl,-z,relro -Wl,-z,now @@ -310,10 +346,6 @@ cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/daligner-1.0+git20240119.335105d=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -o LA2ONE LA2ONE.c align.c DB.c QV.c ONElib.c -lm -Wl,-z,relro -Wl,-z,now cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/daligner-1.0+git20240119.335105d=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -o LAcheck LAcheck.c align.c DB.c QV.c -lm -Wl,-z,relro -Wl,-z,now cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/daligner-1.0+git20240119.335105d=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing -o ONE2LA ONE2LA.c align.c DB.c QV.c ONElib.c -lm -Wl,-z,relro -Wl,-z,now -ONE2LA.c: In function 'main': -ONE2LA.c:30:20: warning: variable 'small' set but not used [-Wunused-but-set-variable] - 30 | int tspace, small, tbytes; - | ^~~~~ LAshow.c: In function 'main': LAshow.c:415:36: warning: variable 'lhalf' set but not used [-Wunused-but-set-variable] 415 | int blast, match, seen, lhalf, rhalf; @@ -327,6 +359,10 @@ LAshow.c:415:16: warning: variable 'blast' set but not used [-Wunused-but-set-variable] 415 | int blast, match, seen, lhalf, rhalf; | ^~~~~ +ONE2LA.c: In function 'main': +ONE2LA.c:30:20: warning: variable 'small' set but not used [-Wunused-but-set-variable] + 30 | int tspace, small, tbytes; + | ^~~~~ LAshow.c:743:5: warning: 'bmap' may be used uninitialized [-Wmaybe-uninitialized] 743 | free(bmap); | ^~~~~~~~~~ @@ -520,6 +556,13 @@ ONElib.c:3499:5: note: here 3499 | case 4: | ^~~~ +ONElib.c: In function 'ltfRead': +ONElib.c:3564:10: warning: 'val' may be used uninitialized [-Wmaybe-uninitialized] + 3564 | return val ; + | ^~~ +ONElib.c:3544:7: note: 'val' was declared here + 3544 | I64 val ; + | ^~~ ONElib.c: In function 'oneSchemaCreateDynamic': ONElib.c:37:19: warning: statement with no effect [-Wunused-value] 37 | #define assert(x) 0 @@ -611,13 +654,6 @@ ONElib.c:2040:7: note: in expansion of macro 'assert' 2040 | { assert (listLen >= 0) ; | ^~~~~~ -ONElib.c: In function 'ltfRead': -ONElib.c:3564:10: warning: 'val' may be used uninitialized [-Wmaybe-uninitialized] - 3564 | return val ; - | ^~~ -ONElib.c:3544:7: note: 'val' was declared here - 3544 | I64 val ; - | ^~~ ONElib.c: In function 'oneFileClose': ONElib.c:37:19: warning: statement with no effect [-Wunused-value] 37 | #define assert(x) 0 @@ -700,7 +736,7 @@ debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/daligner-1.0+git20240119.335105d' dh_auto_install - make -j42 install DESTDIR=/build/reproducible-path/daligner-1.0\+git20240119.335105d/debian/daligner AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + make -j20 install DESTDIR=/build/reproducible-path/daligner-1.0\+git20240119.335105d/debian/daligner AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/daligner-1.0+git20240119.335105d' install -d /build/reproducible-path/daligner-1.0+git20240119.335105d/debian/daligner/usr/bin install daligner HPC.daligner LAsort LAmerge LAsplit LAcat LAshow LA2ONE LAcheck ONE2LA /build/reproducible-path/daligner-1.0+git20240119.335105d/debian/daligner/usr/bin @@ -732,8 +768,8 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'daligner' in '../daligner_1.0+git20240119.335105d-3_amd64.deb'. dpkg-deb: building package 'daligner-dbgsym' in '../daligner-dbgsym_1.0+git20240119.335105d-3_amd64.deb'. +dpkg-deb: building package 'daligner' in '../daligner_1.0+git20240119.335105d-3_amd64.deb'. dpkg-genbuildinfo --build=binary -O../daligner_1.0+git20240119.335105d-3_amd64.buildinfo dpkg-genchanges --build=binary -O../daligner_1.0+git20240119.335105d-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -741,12 +777,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/26120/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/26120/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2705120 and its subdirectories -I: Current time: Mon Sep 22 02:35:20 -12 2025 -I: pbuilder-time-stamp: 1758551720 +I: removing directory /srv/workspace/pbuilder/26120 and its subdirectories +I: Current time: Tue Aug 20 22:16:11 +14 2024 +I: pbuilder-time-stamp: 1724141771