Diff of the two buildlogs: -- --- b1/build.log 2024-12-29 16:31:54.272368272 +0000 +++ b2/build.log 2024-12-29 16:36:07.052812774 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Dec 29 04:25:33 -12 2024 -I: pbuilder-time-stamp: 1735489533 +I: Current time: Sun Feb 1 12:54:56 +14 2026 +I: pbuilder-time-stamp: 1769900096 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -28,52 +28,84 @@ dpkg-source: info: applying python3.12-syntax.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3543995/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3689454/tmp/hooks/D01_modify_environment starting +debug: Running on ionos5-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jan 31 22:55 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3689454/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3689454/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='5db516aa85bb44b79fc4db54f0b0dc73' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3543995' - PS1='# ' - PS2='> ' + INVOCATION_ID=f4049bdc0a9e41f283bb960892821f38 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3689454 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.qlzMCXsh/pbuilderrc_pvPs --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.qlzMCXsh/b1 --logfile b1/build.log circlator_1.5.6-12.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.qlzMCXsh/pbuilderrc_hIQ3 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.qlzMCXsh/b2 --logfile b2/build.log circlator_1.5.6-12.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos11-amd64 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.11.10+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.10-1~bpo12+1 (2024-12-19) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3543995/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3689454/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -343,7 +375,7 @@ Get: 204 http://deb.debian.org/debian unstable/main amd64 python3-pytest all 8.3.4-1 [250 kB] Get: 205 http://deb.debian.org/debian unstable/main amd64 python3-yaml amd64 6.0.2-1+b1 [178 kB] Get: 206 http://deb.debian.org/debian unstable/main amd64 spades amd64 3.15.5+dfsg-8 [9229 kB] -Fetched 151 MB in 5s (27.9 MB/s) +Fetched 151 MB in 19s (7841 kB/s) Preconfiguring packages ... Selecting previously unselected package libpipeline1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19859 files and directories currently installed.) @@ -1032,8 +1064,8 @@ Setting up tzdata (2024b-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Sun Dec 29 16:28:13 UTC 2024. -Universal Time is now: Sun Dec 29 16:28:13 UTC 2024. +Local time is now: Sat Jan 31 22:58:06 UTC 2026. +Universal Time is now: Sat Jan 31 22:58:06 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libpython3.13-minimal:amd64 (3.13.1-2) ... @@ -1371,7 +1403,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/circlator-1.5.6/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../circlator_1.5.6-12_source.changes +I: user script /srv/workspace/pbuilder/3689454/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/3689454/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/circlator-1.5.6/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../circlator_1.5.6-12_source.changes dpkg-buildpackage: info: source package circlator dpkg-buildpackage: info: source version 1.5.6-12 dpkg-buildpackage: info: source distribution unstable @@ -1417,42 +1453,42 @@ running build running build_py creating /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator +copying circlator/assemble.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator +copying circlator/clean.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator +copying circlator/common.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator +copying circlator/versions.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator copying circlator/__init__.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator +copying circlator/external_progs.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator +copying circlator/bamfilter.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator copying circlator/mapping.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator -copying circlator/assemble.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator copying circlator/start_fixer.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator +copying circlator/minimus2.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator +copying circlator/program.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator copying circlator/assembly.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator -copying circlator/versions.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator -copying circlator/bamfilter.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator copying circlator/merge.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator -copying circlator/common.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator -copying circlator/external_progs.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator -copying circlator/program.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator -copying circlator/clean.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator copying circlator/dnaa.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator -copying circlator/minimus2.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator creating /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks -copying circlator/tasks/__init__.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks +copying circlator/tasks/assemble.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks +copying circlator/tasks/clean.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks +copying circlator/tasks/progcheck.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks copying circlator/tasks/bam2reads.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks +copying circlator/tasks/version.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks copying circlator/tasks/all.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks -copying circlator/tasks/assemble.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks -copying circlator/tasks/merge.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks -copying circlator/tasks/fixstart.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks +copying circlator/tasks/get_dnaa.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks +copying circlator/tasks/__init__.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks copying circlator/tasks/test.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks -copying circlator/tasks/version.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks -copying circlator/tasks/progcheck.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks -copying circlator/tasks/clean.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks copying circlator/tasks/minimus2.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks -copying circlator/tasks/get_dnaa.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks +copying circlator/tasks/merge.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks copying circlator/tasks/mapreads.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks +copying circlator/tasks/fixstart.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks creating /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/data -copying circlator/data/test_make_data.sh -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/data -copying circlator/data/test_ref.fa.fai -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/data -copying circlator/data/test_ref.fa -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/data copying circlator/data/test_contigs.fa -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/data -copying circlator/data/test_for_reads.fa -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/data -copying circlator/data/test_reads.fq.gz -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/data copying circlator/data/dnaA.fasta -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/data +copying circlator/data/test_reads.fq.gz -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/data +copying circlator/data/test_ref.fa.fai -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/data +copying circlator/data/test_make_data.sh -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/data +copying circlator/data/test_for_reads.fa -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/data +copying circlator/data/test_ref.fa -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/data running build_scripts creating build/scripts-3.13 copying and adjusting scripts/circlator -> build/scripts-3.13 @@ -1463,42 +1499,42 @@ running build running build_py creating /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator +copying circlator/assemble.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator +copying circlator/clean.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator +copying circlator/common.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator +copying circlator/versions.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator copying circlator/__init__.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator +copying circlator/external_progs.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator +copying circlator/bamfilter.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator copying circlator/mapping.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator -copying circlator/assemble.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator copying circlator/start_fixer.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator +copying circlator/minimus2.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator +copying circlator/program.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator copying circlator/assembly.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator -copying circlator/versions.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator -copying circlator/bamfilter.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator copying circlator/merge.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator -copying circlator/common.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator -copying circlator/external_progs.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator -copying circlator/program.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator -copying circlator/clean.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator copying circlator/dnaa.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator -copying circlator/minimus2.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator creating /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks -copying circlator/tasks/__init__.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks +copying circlator/tasks/assemble.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks +copying circlator/tasks/clean.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks +copying circlator/tasks/progcheck.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks copying circlator/tasks/bam2reads.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks +copying circlator/tasks/version.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks copying circlator/tasks/all.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks -copying circlator/tasks/assemble.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks -copying circlator/tasks/merge.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks -copying circlator/tasks/fixstart.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks +copying circlator/tasks/get_dnaa.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks +copying circlator/tasks/__init__.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks copying circlator/tasks/test.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks -copying circlator/tasks/version.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks -copying circlator/tasks/progcheck.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks -copying circlator/tasks/clean.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks copying circlator/tasks/minimus2.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks -copying circlator/tasks/get_dnaa.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks +copying circlator/tasks/merge.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks copying circlator/tasks/mapreads.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks +copying circlator/tasks/fixstart.py -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks creating /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/data -copying circlator/data/test_make_data.sh -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/data -copying circlator/data/test_ref.fa.fai -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/data -copying circlator/data/test_ref.fa -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/data copying circlator/data/test_contigs.fa -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/data -copying circlator/data/test_for_reads.fa -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/data -copying circlator/data/test_reads.fq.gz -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/data copying circlator/data/dnaA.fasta -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/data +copying circlator/data/test_reads.fq.gz -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/data +copying circlator/data/test_ref.fa.fai -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/data +copying circlator/data/test_make_data.sh -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/data +copying circlator/data/test_for_reads.fa -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/data +copying circlator/data/test_ref.fa -> /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/data running build_scripts creating build/scripts-3.12 copying and adjusting scripts/circlator -> build/scripts-3.12 @@ -1511,8 +1547,6 @@ 'circlator/tests/clean_test.py' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/clean_test.py' 'circlator/tests/common_test.py' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/common_test.py' 'circlator/tests/data' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data' -'circlator/tests/data/start_fixer_init_dnaA.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_init_dnaA.fa' -'circlator/tests/data/start_fixer_init_contigs.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_init_contigs.fa' 'circlator/tests/data/assemble_test.dummy_reads.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assemble_test.dummy_reads.fa' 'circlator/tests/data/assemble_test_rename_canu_contigs.expect.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assemble_test_rename_canu_contigs.expect.fa' 'circlator/tests/data/assemble_test_rename_canu_contigs.in.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assemble_test_rename_canu_contigs.in.fa' @@ -1650,6 +1684,8 @@ 'circlator/tests/data/start_fixer_find_circular_using_prodigal.ctgs.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_find_circular_using_prodigal.ctgs.fa' 'circlator/tests/data/start_fixer_find_circular_using_promer.contigs.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_find_circular_using_promer.contigs.fa' 'circlator/tests/data/start_fixer_find_circular_using_promer.refs.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_find_circular_using_promer.refs.fa' +'circlator/tests/data/start_fixer_init_contigs.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_init_contigs.fa' +'circlator/tests/data/start_fixer_init_dnaA.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_init_dnaA.fa' 'circlator/tests/data/start_fixer_init_ignore_ids' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_init_ignore_ids' 'circlator/tests/data/start_fixer_max_length_from_fasta_file.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_max_length_from_fasta_file.fa' 'circlator/tests/data/start_fixer_rearrange_contigs.expect.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_rearrange_contigs.expect.fa' @@ -1698,7 +1734,7 @@ =============================== warnings summary =============================== ../../../../../../usr/lib/python3/dist-packages/pyfastaq/__init__.py:3 - /usr/lib/python3/dist-packages/pyfastaq/__init__.py:3: DeprecationWarning: Unimplemented abstract methods {'locate_file', 'read_text'} + /usr/lib/python3/dist-packages/pyfastaq/__init__.py:3: DeprecationWarning: Unimplemented abstract methods {'read_text', 'locate_file'} __version__ = Distribution().from_name('pyfastaq').version circlator/__init__.py:1 @@ -1706,7 +1742,7 @@ from pkg_resources import get_distribution -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html -================== 109 passed, 6 skipped, 2 warnings in 7.27s ================== +================== 109 passed, 6 skipped, 2 warnings in 3.92s ================== I: pybuild pybuild:308: cp -av circlator/tests /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/ 'circlator/tests' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests' 'circlator/tests/assembly_test.py' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/assembly_test.py' @@ -1714,8 +1750,6 @@ 'circlator/tests/clean_test.py' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/clean_test.py' 'circlator/tests/common_test.py' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/common_test.py' 'circlator/tests/data' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data' -'circlator/tests/data/start_fixer_init_dnaA.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/start_fixer_init_dnaA.fa' -'circlator/tests/data/start_fixer_init_contigs.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/start_fixer_init_contigs.fa' 'circlator/tests/data/assemble_test.dummy_reads.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/assemble_test.dummy_reads.fa' 'circlator/tests/data/assemble_test_rename_canu_contigs.expect.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/assemble_test_rename_canu_contigs.expect.fa' 'circlator/tests/data/assemble_test_rename_canu_contigs.in.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/assemble_test_rename_canu_contigs.in.fa' @@ -1853,6 +1887,8 @@ 'circlator/tests/data/start_fixer_find_circular_using_prodigal.ctgs.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/start_fixer_find_circular_using_prodigal.ctgs.fa' 'circlator/tests/data/start_fixer_find_circular_using_promer.contigs.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/start_fixer_find_circular_using_promer.contigs.fa' 'circlator/tests/data/start_fixer_find_circular_using_promer.refs.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/start_fixer_find_circular_using_promer.refs.fa' +'circlator/tests/data/start_fixer_init_contigs.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/start_fixer_init_contigs.fa' +'circlator/tests/data/start_fixer_init_dnaA.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/start_fixer_init_dnaA.fa' 'circlator/tests/data/start_fixer_init_ignore_ids' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/start_fixer_init_ignore_ids' 'circlator/tests/data/start_fixer_max_length_from_fasta_file.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/start_fixer_max_length_from_fasta_file.fa' 'circlator/tests/data/start_fixer_rearrange_contigs.expect.fa' -> '/build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/start_fixer_rearrange_contigs.expect.fa' @@ -1901,7 +1937,7 @@ =============================== warnings summary =============================== ../../../../../../usr/lib/python3/dist-packages/pyfastaq/__init__.py:3 - /usr/lib/python3/dist-packages/pyfastaq/__init__.py:3: DeprecationWarning: Unimplemented abstract methods {'read_text', 'locate_file'} + /usr/lib/python3/dist-packages/pyfastaq/__init__.py:3: DeprecationWarning: Unimplemented abstract methods {'locate_file', 'read_text'} __version__ = Distribution().from_name('pyfastaq').version circlator/__init__.py:1 @@ -1909,7 +1945,7 @@ from pkg_resources import get_distribution -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html -================== 109 passed, 6 skipped, 2 warnings in 6.96s ================== +================== 109 passed, 6 skipped, 2 warnings in 1.72s ================== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild @@ -1937,292 +1973,292 @@ running install_lib creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/__init__.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/mapping.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/assemble.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/start_fixer.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/assembly.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/versions.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/clean.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/common.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/external_progs_test.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/dnaa_test.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/common_test.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/start_fixer_test.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/assembly_test.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/clean_test.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/common_test.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/external_progs_test.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/assemble_test.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/dnaa_test.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/minimus2_test.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/mapping_test.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/bamfilter_test.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/__pycache__ -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/__pycache__/start_fixer_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/__pycache__ -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/__pycache__/common_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/__pycache__ -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/__pycache__/dnaa_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/__pycache__ -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/__pycache__/external_progs_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/__pycache__ -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/__pycache__/clean_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/__pycache__ -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/__pycache__/assembly_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/__pycache__/assemble_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/__pycache__ +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/__pycache__/external_progs_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/__pycache__/mapping_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/__pycache__ -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/__pycache__/merge_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/__pycache__ -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/__pycache__/bamfilter_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/__pycache__/minimus2_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/__pycache__ +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/__pycache__/assembly_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/__pycache__ +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/__pycache__/clean_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/__pycache__ +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/__pycache__/common_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/__pycache__ +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/__pycache__/start_fixer_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/__pycache__ +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/__pycache__/dnaa_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/__pycache__ +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/__pycache__/bamfilter_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/__pycache__ +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/__pycache__/merge_test.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/__pycache__ +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/start_fixer_test.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/merge_test.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/clean_test_contigs_to_keep -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_run.reads.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_write_act_files.coords -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_find_circular_using_promer.contigs.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_get_all_unmapped_reads.reads.fq -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_get_region_end.bam -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_run_bit_of_everything.ctg.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_get_region_start.reads.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_write_act_files.expected.crunch -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/clean_test_load_nucmer_hits.coords -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_init_contigs.fasta -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_run_keep_unmapped.out.reads.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_run_ignore_all.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test1.reassembly.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_write_fasta_plus_circularized_ends.out.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_run_none_for_prodigal.ctg.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/mapping_test_aligned_read_to_read.bam.bai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_break_reads.broken_reads.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_get_all_unmapped_reads.reads.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/mapping_test_aligned_read_to_read.reads.fq -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/minimus2_test_run_minimus2.in.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test2.expected.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_run_no_qual.bam.bai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assemble_test.dummy_reads.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_exclude_region.bam.bai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/common_test_file_exists -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/minimus2_test_run_minimus2_on_one_contig.expected.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test2.reassembly.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_circular_contigs_from_spades_after_3_6_1.contigs.paths -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_break_reads.broken_reads.fq -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/mapping_test_aligned_read_to_read.bam -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_rearrange_contigs.expect.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_write_act_files.expected.sh -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_all_reads_from_contig.reads.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/clean_test_remove_small_contigs.in.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_get_all_unmapped_reads.reads.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test3.reassembly.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_get_all_unmapped_reads.bam -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_find_circular_using_promer.refs.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_circular_contigs_from_spades_after_3_6_1.assembly_graph.fastg -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_circular_contigs_from_canu.gfa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_run_ignore_all.expect.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_contigs_paths +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_contigs_paths/assembly_graph.fastg -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_contigs_paths +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_contigs_paths/contigs.fasta -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_contigs_paths copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_merge_pair.test2.coords -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_run_bit_of_everything.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/clean_test_clean_contigs.out.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_run.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_get_all_unmapped_reads.bam.bai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_get_contigs_to_use.infile -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_get_region_start.bam -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test4.reassembly.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_index_fasta.fa.fai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/minimus2_test_run_minimus2_on_one_contig.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_break_reads.bam -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_get_region_end.bam -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_max_length_from_fasta_file.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/minimus2_test_run_initial_merge.in.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_hits_to_new_seq.2.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assemble_test_rename_canu_contigs.expect.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_init_contigs.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_all_reads_from_contig.reads.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_hits_to_new_seq.2.reassembly.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/minimus2_test.write_split_contig.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_check_contigs_to_use.bam.bai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/mapping_test_bwa_mem.reads.fq -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/minimus2_test_run_minimus2_on_each_contig.expected.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_exclude_region.reads.fq -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/clean_test_remove_small_contigs.in.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_get_spades_circular_nodes.fastg -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test3.expected.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_init_spades_post_3_6_1_ok +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_init_spades_post_3_6_1_ok/assembly_graph.fastg -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_init_spades_post_3_6_1_ok +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_init_spades_post_3_6_1_ok/contigs.paths -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_init_spades_post_3_6_1_ok +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_init_spades_post_3_6_1_ok/contigs.fasta -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_init_spades_post_3_6_1_ok +creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_assembly_graph +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_assembly_graph/contigs.paths -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_assembly_graph +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_assembly_graph/contigs.fasta -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_assembly_graph +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_write_act_files.expected.crunch -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_run.ref.fa.fai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_run_discard_unmapped.out.reads.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/clean_test_write_log.log -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_find_circular_using_prodigal.ctgs.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_get_region_end.reads.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test3.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_write_fasta_plus_circularized_ends.in.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_run_no_qual.bam -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/minimus2_test_run_initial_merge.expected.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/mapping_test_bwa_mem.ref.fa.fai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_reassembly.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test1.reassembly.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/mapping_test_bwa_mem.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_rearrange_contigs.refs.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_run_bit_of_everything.ignore -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_get_ref_lengths.bam -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assemble_test_rename_canu_contigs.in.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/minimus2_test_run_minimus2_on_one_contig.in.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/mapping_test_aligned_read_to_read.bam.bai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_load_nucmer_hits.coords -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_all_reads_from_contig.bam -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_run_ignore_all.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/clean_test_contigs_to_keep -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_exclude_region.bam -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_original.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test3.expected.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/mapping_test_bwa_index.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test1.expected.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test4.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/mapping_test_bwa_mem.reads.fq -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_write_fasta_plus_circularized_ends.out.ignore.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_nucmer_hits_to_potential_join.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_run_none_for_prodigal.ctg.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test1.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_circular_contigs_spades_pre_3_6_1 copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_circular_contigs_spades_pre_3_6_1/contigs.fastg -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_circular_contigs_spades_pre_3_6_1 copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_circular_contigs_spades_pre_3_6_1/contigs.fasta -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_circular_contigs_spades_pre_3_6_1 -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_merge_pair.test3.coords -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_get_ref_lengths.bam -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_run_ignore_all.expect.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_reassembly.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_run_with_qual.bam.bai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_find_circular_using_promer.refs.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_circular_contigs_spades_post_3_6_1 -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_circular_contigs_spades_post_3_6_1/assembly_graph.fastg -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_circular_contigs_spades_post_3_6_1 -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_circular_contigs_spades_post_3_6_1/contigs.fasta -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_circular_contigs_spades_post_3_6_1 -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_circular_contigs_spades_post_3_6_1/contigs.paths -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_circular_contigs_spades_post_3_6_1 -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_write_fasta_plus_circularized_ends.out.ignore.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test3.reassembly.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_get_region_end.bam.bai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_run_ignore_all.to_ignore -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test3.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test2.expected.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test2.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_break_reads.bam.bai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_all_reads_from_contig.bam.bai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_run.make_reads_and_bam.sh -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/clean_test_remove_small_contigs.out.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_run_bit_of_everything.ctg.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_contigs_dict_to_file.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/minimus2_test_run_minimus2_on_each_contig.expected.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_get_contigs.fasta -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_run_with_qual.bam -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/minimus2_test_run_minimus2_on_one_contig.expected.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_run_keep_unmapped.out.reads.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_get_spades_circular_nodes.fastg -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_get_region_start.reads.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_hits_to_new_seq.2.reassembly.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_write_fasta_plus_circularized_ends.out.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_write_act_files.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_rearrange_contigs.expect.log -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_hits_to_new_seq.1.reassembly.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_init_spades_pre_3_6_1_ok copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_init_spades_pre_3_6_1_ok/contigs.fastg -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_init_spades_pre_3_6_1_ok copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_init_spades_pre_3_6_1_ok/contigs.fasta -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_init_spades_pre_3_6_1_ok +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_get_contigs_to_use.bam -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_hits_to_new_seq.2.expected.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_exclude_region.reads.fq -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/minimus2_test.write_split_contig.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_init_ignore_ids -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/clean_test_load_nucmer_hits.coords -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_check_contigs_to_use.bam.bai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_circular_contigs_from_spades_before_3_6_1.fastg -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_nucmer_hits_to_potential_join.reassembly.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_circular_contigs_only_contigs.fasta -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_merge_pair.test3.coords -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_index_fasta.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_init_contigs.fasta -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_get_region_start.bam.bai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_break_reads.broken_reads.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_run_bit_of_everything.expect.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/mapping_test_bwa_mem.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_run_no_qual.bam.bai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_spades_contigs_paths_to_dict.contigs.paths -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test4.reassembly.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_run_none_for_prodigal.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_rearrange_contigs.expect.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_max_length_from_fasta_file.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_break_reads.bam -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_run_none_for_prodigal.expect.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_write_renamed_contigs.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/mapping_test_aligned_read_to_read.reads.fq -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_rearrange_contigs.in.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_init_dnaA.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_exclude_region.reads.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_run_keep_unmapped.out.reads.fq -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_get_contigs_to_use.infile -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_get_contigs.fasta -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_index_fasta.fa.fai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/minimus2_test.dummy_input_assembly.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/mapping_test_aligned_read_to_read.bam -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assemble_test.dummy_reads.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_run_discard_unmapped.out.reads.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_nucmer_hits_to_potential_join.reassembly.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_run_none_for_prodigal.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_hits_to_new_seq.1.expected.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_run_no_qual.bam -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_rearrange_contigs.expect.log -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/mapping_test_bwa_index.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_index_fasta.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_check_contigs_to_use.bam -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/clean_test_clean_contigs.in.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_assembly_graph_or_contig_paths copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_assembly_graph_or_contig_paths/contigs.fasta -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_assembly_graph_or_contig_paths -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_get_region_start.bam.bai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/mapping_test_bwa_mem.ref.fa.fai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_contigs_dict_to_file.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_run_with_qual.bam -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_write_act_files.qry.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_circular_contigs_only_contigs.fasta -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_hits_to_new_seq.1.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/minimus2_test_run_initial_merge.expected.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_run.make_reads_and_bam.sh -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_nucmer_hits_to_potential_join.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test4.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_get_contigs_to_use.bam -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_hits_to_new_seq.1.reassembly.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/clean_test_clean_contigs.in.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_circular_contigs_from_spades_after_3_6_1.assembly_graph.fastg -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/minimus2_test_run_minimus2_on_one_contig.in.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/minimus2_test_run_minimus2_on_one_contig.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_run_with_qual.bam.bai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_spades_contigs_paths_to_dict.contigs.paths -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_get_all_unmapped_reads.reads.fq -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_find_circular_using_promer.contigs.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/minimus2_test_run_minimus2_on_each_contig.in.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_circular_contigs_spades_post_3_6_1 +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_circular_contigs_spades_post_3_6_1/assembly_graph.fastg -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_circular_contigs_spades_post_3_6_1 +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_circular_contigs_spades_post_3_6_1/contigs.paths -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_circular_contigs_spades_post_3_6_1 +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_circular_contigs_spades_post_3_6_1/contigs.fasta -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_circular_contigs_spades_post_3_6_1 +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/minimus2_test.dummy_input_assembly.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_init_spades_pre_3_6_1_no_fastg copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_init_spades_pre_3_6_1_no_fastg/contigs.fasta -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_init_spades_pre_3_6_1_no_fastg -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_exclude_region.bam -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test1.expected.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/minimus2_test_run_initial_merge.in.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_get_all_unmapped_reads.bam.bai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_break_reads.broken_reads.fq -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_circular_contigs_from_spades_after_3_6_1.contigs.paths -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_write_act_files.expected.sh -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test2.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_hits_to_new_seq.2.expected.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_write_renamed_contigs.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_run_none_for_prodigal.expect.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_write_act_files.qry.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_get_region_end.bam.bai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_run_ignore_all.to_ignore -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_hits_to_new_seq.1.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/mapping_test_aligned_read_to_read.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_all_reads_from_contig.reads.fq -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_write_act_files.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test4.expected.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_find_circular_using_prodigal.ctgs.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_run.ref.fa.fai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_break_reads.bam.bai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_check_contigs_to_use.bam -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_init_spades_post_3_6_1_ok -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_init_spades_post_3_6_1_ok/assembly_graph.fastg -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_init_spades_post_3_6_1_ok -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_init_spades_post_3_6_1_ok/contigs.fasta -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_init_spades_post_3_6_1_ok -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_init_spades_post_3_6_1_ok/contigs.paths -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_init_spades_post_3_6_1_ok -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_write_fasta_plus_circularized_ends.in.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_all_reads_from_contig.bam -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/minimus2_test_run_minimus2.in.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assemble_test_rename_canu_contigs.in.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_original.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_run_bit_of_everything.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_get_region_start.bam -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_contigs_paths -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_contigs_paths/assembly_graph.fastg -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_contigs_paths -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_contigs_paths/contigs.fasta -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_contigs_paths -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/clean_test_remove_small_contigs.out.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_all_reads_from_contig.bam.bai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_get_region_end.reads.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_init_ignore_ids -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_exclude_region.bam.bai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_run.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_rearrange_contigs.refs.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_assembly_graph -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_assembly_graph/contigs.fasta -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_assembly_graph -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_assembly_graph/contigs.paths -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_assembly_graph -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/clean_test_clean_contigs.out.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/minimus2_test_run_minimus2_on_each_contig.in.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_exclude_region.reads.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_init_contigs.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assemble_test_rename_canu_contigs.expect.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_merge_pair.test1.coords -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/start_fixer_rearrange_contigs.in.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_load_nucmer_hits.coords -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_circular_contigs_from_canu.gfa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_run.reads.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test1.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/assembly_test_circular_contigs_from_spades_before_3_6_1.fastg -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/clean_test_write_log.log -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test2.reassembly.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/clean_test.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/merge_test.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/minimus2_test.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/bamfilter_test.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/bamfilter.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/merge.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/common.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/external_progs.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/program.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator -creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/__pycache__ -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/__pycache__/assembly.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/__pycache__ -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/__pycache__/bamfilter.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/__pycache__ -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/__pycache__/clean.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/__pycache__ -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/__pycache__/dnaa.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/__pycache__ -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/__pycache__/mapping.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/__pycache__ -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/__pycache__/program.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/__pycache__ -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/__pycache__/assemble.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/__pycache__ -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/__pycache__/external_progs.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/__pycache__ -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/__pycache__/versions.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/__pycache__ -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/__pycache__/merge.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/__pycache__ -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/__pycache__/common.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/__pycache__ -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/__pycache__ -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/__pycache__/minimus2.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/__pycache__ -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/__pycache__/start_fixer.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/__pycache__ -creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/data/test_make_data.sh -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/data/test_ref.fa.fai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/data/test_ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/data/test_contigs.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/data/test_for_reads.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/data/test_reads.fq.gz -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/data/dnaA.fasta -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test4.expected.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_run_keep_unmapped.out.reads.fq -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tests/data/bamfilter_test_all_reads_from_contig.reads.fq -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/data creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/__init__.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/assemble.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/clean.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/progcheck.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/bam2reads.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/version.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/all.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/assemble.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/merge.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/fixstart.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/get_dnaa.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/__init__.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/test.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/minimus2.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/merge.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/mapreads.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/__pycache__ +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/__pycache__/assemble.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/__pycache__ +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/__pycache__/fixstart.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/__pycache__/version.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/__pycache__ -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/__pycache__/clean.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/__pycache__/all.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/__pycache__ +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/__pycache__/bam2reads.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/__pycache__ +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/__pycache__ +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/__pycache__/minimus2.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/__pycache__ +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/__pycache__/merge.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/__pycache__ +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/__pycache__/clean.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/__pycache__/get_dnaa.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/__pycache__/mapreads.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/__pycache__/progcheck.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/__pycache__ -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/__pycache__/fixstart.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/__pycache__ -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/__pycache__/assemble.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/__pycache__ -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/__pycache__/merge.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/__pycache__ -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/__pycache__ -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/__pycache__/bam2reads.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/__pycache__ -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/__pycache__/minimus2.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/__pycache__ -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/version.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/progcheck.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/clean.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/minimus2.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/get_dnaa.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/mapreads.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/clean.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/dnaa.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/tasks/fixstart.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/versions.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/__init__.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/external_progs.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/bamfilter.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/mapping.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/start_fixer.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/minimus2.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator -byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/mapping.py to mapping.cpython-313.pyc +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/program.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/assembly.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/merge.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/dnaa.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator +creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/__pycache__ +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/__pycache__/assemble.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/__pycache__ +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/__pycache__/start_fixer.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/__pycache__ +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/__pycache__/versions.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/__pycache__ +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/__pycache__/common.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/__pycache__ +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/__pycache__/assembly.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/__pycache__ +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/__pycache__/bamfilter.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/__pycache__ +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/__pycache__ +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/__pycache__/mapping.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/__pycache__ +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/__pycache__/minimus2.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/__pycache__ +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/__pycache__/merge.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/__pycache__ +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/__pycache__/clean.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/__pycache__ +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/__pycache__/dnaa.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/__pycache__ +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/__pycache__/external_progs.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/__pycache__ +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/__pycache__/program.cpython-313.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/__pycache__ +creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/data/test_contigs.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/data/dnaA.fasta -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/data/test_reads.fq.gz -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/data/test_ref.fa.fai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/data/test_make_data.sh -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/data/test_for_reads.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.13/build/circlator/data/test_ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/data byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/assemble.py to assemble.cpython-313.pyc -byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/start_fixer.py to start_fixer.cpython-313.pyc -byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/assembly.py to assembly.cpython-313.pyc -byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/versions.py to versions.cpython-313.pyc -byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/external_progs_test.py to external_progs_test.cpython-313.pyc -byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/dnaa_test.py to dnaa_test.cpython-313.pyc -byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/common_test.py to common_test.cpython-313.pyc -byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/start_fixer_test.py to start_fixer_test.cpython-313.pyc +byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/clean.py to clean.cpython-313.pyc +byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/common.py to common.cpython-313.pyc byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/assembly_test.py to assembly_test.cpython-313.pyc -byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/assemble_test.py to assemble_test.cpython-313.pyc -byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/mapping_test.py to mapping_test.cpython-313.pyc byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/clean_test.py to clean_test.cpython-313.pyc -byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/merge_test.py to merge_test.cpython-313.pyc +byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/common_test.py to common_test.cpython-313.pyc +byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/external_progs_test.py to external_progs_test.cpython-313.pyc +byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/assemble_test.py to assemble_test.cpython-313.pyc +byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/dnaa_test.py to dnaa_test.cpython-313.pyc byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/minimus2_test.py to minimus2_test.cpython-313.pyc +byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/mapping_test.py to mapping_test.cpython-313.pyc byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/bamfilter_test.py to bamfilter_test.cpython-313.pyc -byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/bamfilter.py to bamfilter.cpython-313.pyc -byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/merge.py to merge.cpython-313.pyc -byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/common.py to common.cpython-313.pyc -byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/external_progs.py to external_progs.cpython-313.pyc -byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/program.py to program.cpython-313.pyc -byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/start_fixer_test.py to start_fixer_test.cpython-313.pyc +byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tests/merge_test.py to merge_test.cpython-313.pyc +byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/assemble.py to assemble.cpython-313.pyc +byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/clean.py to clean.cpython-313.pyc +byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/progcheck.py to progcheck.cpython-313.pyc byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/bam2reads.py to bam2reads.cpython-313.pyc +byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/version.py to version.cpython-313.pyc byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/all.py to all.cpython-313.pyc -byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/assemble.py to assemble.cpython-313.pyc -byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/merge.py to merge.cpython-313.pyc -byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/fixstart.py to fixstart.cpython-313.pyc +byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/get_dnaa.py to get_dnaa.cpython-313.pyc +byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/test.py to test.cpython-313.pyc -byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/version.py to version.cpython-313.pyc -byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/progcheck.py to progcheck.cpython-313.pyc -byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/clean.py to clean.cpython-313.pyc byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/minimus2.py to minimus2.cpython-313.pyc -byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/get_dnaa.py to get_dnaa.cpython-313.pyc +byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/merge.py to merge.cpython-313.pyc byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/mapreads.py to mapreads.cpython-313.pyc -byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/clean.py to clean.cpython-313.pyc -byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/dnaa.py to dnaa.cpython-313.pyc +byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/tasks/fixstart.py to fixstart.cpython-313.pyc +byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/versions.py to versions.cpython-313.pyc +byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/external_progs.py to external_progs.cpython-313.pyc +byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/bamfilter.py to bamfilter.cpython-313.pyc +byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/mapping.py to mapping.cpython-313.pyc +byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/start_fixer.py to start_fixer.cpython-313.pyc byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/minimus2.py to minimus2.cpython-313.pyc +byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/program.py to program.cpython-313.pyc +byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/assembly.py to assembly.cpython-313.pyc +byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/merge.py to merge.cpython-313.pyc +byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.13/dist-packages/circlator/dnaa.py to dnaa.cpython-313.pyc running install_egg_info running egg_info creating circlator.egg-info @@ -2264,292 +2300,292 @@ running install_lib creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/__init__.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/mapping.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/assemble.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/start_fixer.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/assembly.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/versions.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/clean.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/common.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/external_progs_test.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/dnaa_test.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/common_test.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/start_fixer_test.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/assembly_test.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/clean_test.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/common_test.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/external_progs_test.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/assemble_test.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/dnaa_test.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/minimus2_test.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/mapping_test.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/bamfilter_test.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/__pycache__ +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/__pycache__/assemble_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/__pycache__ +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/__pycache__/external_progs_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/__pycache__/merge_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/__pycache__/clean_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/__pycache__ -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/__pycache__/minimus2_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/__pycache__ -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/__pycache__/external_progs_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/__pycache__ +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/__pycache__/mapping_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/__pycache__/start_fixer_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/__pycache__ -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/__pycache__/bamfilter_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/__pycache__/dnaa_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/__pycache__ -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/__pycache__/assemble_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/__pycache__/common_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/__pycache__ -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/__pycache__/mapping_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/__pycache__ +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/__pycache__/bamfilter_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/__pycache__ +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/__pycache__/minimus2_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/__pycache__/assembly_test.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/__pycache__ +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/start_fixer_test.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/merge_test.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/clean_test_contigs_to_keep -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_run.reads.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_write_act_files.coords -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/start_fixer_find_circular_using_promer.contigs.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_get_all_unmapped_reads.reads.fq -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_get_region_end.bam -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/start_fixer_run_bit_of_everything.ctg.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_get_region_start.reads.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_write_act_files.expected.crunch -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/clean_test_load_nucmer_hits.coords -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/assembly_test_init_contigs.fasta -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_run_keep_unmapped.out.reads.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/start_fixer_run_ignore_all.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test1.reassembly.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/start_fixer_write_fasta_plus_circularized_ends.out.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/start_fixer_run_none_for_prodigal.ctg.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/mapping_test_aligned_read_to_read.bam.bai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_break_reads.broken_reads.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_get_all_unmapped_reads.reads.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/mapping_test_aligned_read_to_read.reads.fq -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/minimus2_test_run_minimus2.in.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test2.expected.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_run_no_qual.bam.bai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/assemble_test.dummy_reads.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_exclude_region.bam.bai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/common_test_file_exists -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/minimus2_test_run_minimus2_on_one_contig.expected.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test2.reassembly.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/assembly_test_circular_contigs_from_spades_after_3_6_1.contigs.paths -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_break_reads.broken_reads.fq -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/mapping_test_aligned_read_to_read.bam -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/start_fixer_rearrange_contigs.expect.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_write_act_files.expected.sh -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_all_reads_from_contig.reads.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/clean_test_remove_small_contigs.in.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_get_all_unmapped_reads.reads.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test3.reassembly.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_get_all_unmapped_reads.bam -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/start_fixer_find_circular_using_promer.refs.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/assembly_test_circular_contigs_from_spades_after_3_6_1.assembly_graph.fastg -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/assembly_test_circular_contigs_from_canu.gfa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/start_fixer_run_ignore_all.expect.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_contigs_paths +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_contigs_paths/assembly_graph.fastg -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_contigs_paths +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_contigs_paths/contigs.fasta -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_contigs_paths copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_merge_pair.test2.coords -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/start_fixer_run_bit_of_everything.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/clean_test_clean_contigs.out.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_run.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_get_all_unmapped_reads.bam.bai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_get_contigs_to_use.infile -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_get_region_start.bam -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test4.reassembly.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_index_fasta.fa.fai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/minimus2_test_run_minimus2_on_one_contig.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_break_reads.bam -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_get_region_end.bam -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/start_fixer_max_length_from_fasta_file.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/minimus2_test_run_initial_merge.in.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_hits_to_new_seq.2.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/assemble_test_rename_canu_contigs.expect.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/start_fixer_init_contigs.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_all_reads_from_contig.reads.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_hits_to_new_seq.2.reassembly.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/minimus2_test.write_split_contig.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_check_contigs_to_use.bam.bai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/mapping_test_bwa_mem.reads.fq -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/minimus2_test_run_minimus2_on_each_contig.expected.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_exclude_region.reads.fq -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/clean_test_remove_small_contigs.in.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_get_spades_circular_nodes.fastg -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test3.expected.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data/assembly_test_init_spades_post_3_6_1_ok +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/assembly_test_init_spades_post_3_6_1_ok/assembly_graph.fastg -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data/assembly_test_init_spades_post_3_6_1_ok +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/assembly_test_init_spades_post_3_6_1_ok/contigs.paths -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data/assembly_test_init_spades_post_3_6_1_ok +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/assembly_test_init_spades_post_3_6_1_ok/contigs.fasta -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data/assembly_test_init_spades_post_3_6_1_ok +creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_assembly_graph +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_assembly_graph/contigs.paths -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_assembly_graph +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_assembly_graph/contigs.fasta -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_assembly_graph +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_write_act_files.expected.crunch -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_run.ref.fa.fai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_run_discard_unmapped.out.reads.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/clean_test_write_log.log -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/start_fixer_find_circular_using_prodigal.ctgs.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_get_region_end.reads.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test3.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/start_fixer_write_fasta_plus_circularized_ends.in.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_run_no_qual.bam -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/minimus2_test_run_initial_merge.expected.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/mapping_test_bwa_mem.ref.fa.fai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_reassembly.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test1.reassembly.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/mapping_test_bwa_mem.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/start_fixer_rearrange_contigs.refs.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/start_fixer_run_bit_of_everything.ignore -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_get_ref_lengths.bam -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/assemble_test_rename_canu_contigs.in.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/minimus2_test_run_minimus2_on_one_contig.in.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/mapping_test_aligned_read_to_read.bam.bai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_load_nucmer_hits.coords -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_all_reads_from_contig.bam -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/start_fixer_run_ignore_all.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/clean_test_contigs_to_keep -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_exclude_region.bam -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_original.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test3.expected.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/mapping_test_bwa_index.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test1.expected.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test4.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/mapping_test_bwa_mem.reads.fq -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/start_fixer_write_fasta_plus_circularized_ends.out.ignore.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_nucmer_hits_to_potential_join.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/start_fixer_run_none_for_prodigal.ctg.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test1.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data/assembly_test_circular_contigs_spades_pre_3_6_1 copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/assembly_test_circular_contigs_spades_pre_3_6_1/contigs.fastg -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data/assembly_test_circular_contigs_spades_pre_3_6_1 copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/assembly_test_circular_contigs_spades_pre_3_6_1/contigs.fasta -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data/assembly_test_circular_contigs_spades_pre_3_6_1 -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_merge_pair.test3.coords -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_get_ref_lengths.bam -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/start_fixer_run_ignore_all.expect.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_reassembly.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_run_with_qual.bam.bai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/start_fixer_find_circular_using_promer.refs.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data/assembly_test_circular_contigs_spades_post_3_6_1 -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/assembly_test_circular_contigs_spades_post_3_6_1/assembly_graph.fastg -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data/assembly_test_circular_contigs_spades_post_3_6_1 -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/assembly_test_circular_contigs_spades_post_3_6_1/contigs.fasta -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data/assembly_test_circular_contigs_spades_post_3_6_1 -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/assembly_test_circular_contigs_spades_post_3_6_1/contigs.paths -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data/assembly_test_circular_contigs_spades_post_3_6_1 -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/start_fixer_write_fasta_plus_circularized_ends.out.ignore.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test3.reassembly.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_get_region_end.bam.bai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/start_fixer_run_ignore_all.to_ignore -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test3.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test2.expected.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test2.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_break_reads.bam.bai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_all_reads_from_contig.bam.bai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_run.make_reads_and_bam.sh -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/clean_test_remove_small_contigs.out.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/start_fixer_run_bit_of_everything.ctg.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_contigs_dict_to_file.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/minimus2_test_run_minimus2_on_each_contig.expected.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/assembly_test_get_contigs.fasta -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_run_with_qual.bam -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/minimus2_test_run_minimus2_on_one_contig.expected.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_run_keep_unmapped.out.reads.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_get_spades_circular_nodes.fastg -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_get_region_start.reads.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_hits_to_new_seq.2.reassembly.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/start_fixer_write_fasta_plus_circularized_ends.out.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_write_act_files.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/start_fixer_rearrange_contigs.expect.log -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_hits_to_new_seq.1.reassembly.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data/assembly_test_init_spades_pre_3_6_1_ok copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/assembly_test_init_spades_pre_3_6_1_ok/contigs.fastg -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data/assembly_test_init_spades_pre_3_6_1_ok copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/assembly_test_init_spades_pre_3_6_1_ok/contigs.fasta -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data/assembly_test_init_spades_pre_3_6_1_ok +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_get_contigs_to_use.bam -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_hits_to_new_seq.2.expected.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_exclude_region.reads.fq -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/minimus2_test.write_split_contig.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/start_fixer_init_ignore_ids -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/clean_test_load_nucmer_hits.coords -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_check_contigs_to_use.bam.bai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/assembly_test_circular_contigs_from_spades_before_3_6_1.fastg -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_nucmer_hits_to_potential_join.reassembly.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/assembly_test_circular_contigs_only_contigs.fasta -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_merge_pair.test3.coords -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_index_fasta.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/assembly_test_init_contigs.fasta -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_get_region_start.bam.bai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_break_reads.broken_reads.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/start_fixer_run_bit_of_everything.expect.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/mapping_test_bwa_mem.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_run_no_qual.bam.bai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/assembly_test_spades_contigs_paths_to_dict.contigs.paths -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test4.reassembly.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/start_fixer_run_none_for_prodigal.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/start_fixer_rearrange_contigs.expect.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/start_fixer_max_length_from_fasta_file.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_break_reads.bam -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/start_fixer_run_none_for_prodigal.expect.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/start_fixer_write_renamed_contigs.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/mapping_test_aligned_read_to_read.reads.fq -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/start_fixer_rearrange_contigs.in.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/start_fixer_init_dnaA.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_exclude_region.reads.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_run_keep_unmapped.out.reads.fq -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_get_contigs_to_use.infile -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/assembly_test_get_contigs.fasta -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_index_fasta.fa.fai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/minimus2_test.dummy_input_assembly.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/mapping_test_aligned_read_to_read.bam -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/assemble_test.dummy_reads.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_run_discard_unmapped.out.reads.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_nucmer_hits_to_potential_join.reassembly.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/start_fixer_run_none_for_prodigal.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_hits_to_new_seq.1.expected.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_run_no_qual.bam -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/start_fixer_rearrange_contigs.expect.log -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/mapping_test_bwa_index.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_index_fasta.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_check_contigs_to_use.bam -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/clean_test_clean_contigs.in.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_assembly_graph_or_contig_paths copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_assembly_graph_or_contig_paths/contigs.fasta -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_assembly_graph_or_contig_paths -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_get_region_start.bam.bai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/mapping_test_bwa_mem.ref.fa.fai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_contigs_dict_to_file.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_run_with_qual.bam -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_write_act_files.qry.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/assembly_test_circular_contigs_only_contigs.fasta -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_hits_to_new_seq.1.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/minimus2_test_run_initial_merge.expected.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_run.make_reads_and_bam.sh -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_nucmer_hits_to_potential_join.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test4.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_get_contigs_to_use.bam -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_hits_to_new_seq.1.reassembly.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/clean_test_clean_contigs.in.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/assembly_test_circular_contigs_from_spades_after_3_6_1.assembly_graph.fastg -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/minimus2_test_run_minimus2_on_one_contig.in.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/minimus2_test_run_minimus2_on_one_contig.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_run_with_qual.bam.bai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/assembly_test_spades_contigs_paths_to_dict.contigs.paths -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_get_all_unmapped_reads.reads.fq -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/start_fixer_find_circular_using_promer.contigs.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/minimus2_test_run_minimus2_on_each_contig.in.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data/assembly_test_circular_contigs_spades_post_3_6_1 +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/assembly_test_circular_contigs_spades_post_3_6_1/assembly_graph.fastg -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data/assembly_test_circular_contigs_spades_post_3_6_1 +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/assembly_test_circular_contigs_spades_post_3_6_1/contigs.paths -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data/assembly_test_circular_contigs_spades_post_3_6_1 +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/assembly_test_circular_contigs_spades_post_3_6_1/contigs.fasta -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data/assembly_test_circular_contigs_spades_post_3_6_1 +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/minimus2_test.dummy_input_assembly.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data/assembly_test_init_spades_pre_3_6_1_no_fastg copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/assembly_test_init_spades_pre_3_6_1_no_fastg/contigs.fasta -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data/assembly_test_init_spades_pre_3_6_1_no_fastg -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_exclude_region.bam -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test1.expected.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/minimus2_test_run_initial_merge.in.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_get_all_unmapped_reads.bam.bai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_break_reads.broken_reads.fq -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/assembly_test_circular_contigs_from_spades_after_3_6_1.contigs.paths -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_write_act_files.expected.sh -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test2.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_hits_to_new_seq.2.expected.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/start_fixer_write_renamed_contigs.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/start_fixer_run_none_for_prodigal.expect.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_write_act_files.qry.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_get_region_end.bam.bai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/start_fixer_run_ignore_all.to_ignore -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_hits_to_new_seq.1.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/mapping_test_aligned_read_to_read.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_all_reads_from_contig.reads.fq -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_write_act_files.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test4.expected.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/start_fixer_find_circular_using_prodigal.ctgs.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_run.ref.fa.fai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_break_reads.bam.bai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_check_contigs_to_use.bam -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data/assembly_test_init_spades_post_3_6_1_ok -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/assembly_test_init_spades_post_3_6_1_ok/assembly_graph.fastg -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data/assembly_test_init_spades_post_3_6_1_ok -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/assembly_test_init_spades_post_3_6_1_ok/contigs.fasta -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data/assembly_test_init_spades_post_3_6_1_ok -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/assembly_test_init_spades_post_3_6_1_ok/contigs.paths -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data/assembly_test_init_spades_post_3_6_1_ok -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/start_fixer_write_fasta_plus_circularized_ends.in.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_all_reads_from_contig.bam -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/minimus2_test_run_minimus2.in.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/assemble_test_rename_canu_contigs.in.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_original.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/start_fixer_run_bit_of_everything.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_get_region_start.bam -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_contigs_paths -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_contigs_paths/assembly_graph.fastg -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_contigs_paths -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_contigs_paths/contigs.fasta -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_contigs_paths -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/clean_test_remove_small_contigs.out.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_all_reads_from_contig.bam.bai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_get_region_end.reads.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/start_fixer_init_ignore_ids -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_exclude_region.bam.bai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_run.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/start_fixer_rearrange_contigs.refs.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_assembly_graph -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_assembly_graph/contigs.fasta -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_assembly_graph -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_assembly_graph/contigs.paths -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data/assembly_test_init_spades_post_3_6_1_no_assembly_graph -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/clean_test_clean_contigs.out.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/minimus2_test_run_minimus2_on_each_contig.in.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_exclude_region.reads.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/start_fixer_init_contigs.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/assemble_test_rename_canu_contigs.expect.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_merge_pair.test1.coords -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/start_fixer_rearrange_contigs.in.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_load_nucmer_hits.coords -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/assembly_test_circular_contigs_from_canu.gfa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_run.reads.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test1.ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/assembly_test_circular_contigs_from_spades_before_3_6_1.fastg -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/clean_test_write_log.log -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test2.reassembly.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/clean_test.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/merge_test.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/minimus2_test.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/bamfilter_test.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/bamfilter.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/merge.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/common.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/merge_test_merge_bridged_contig_pair.test4.expected.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_run_keep_unmapped.out.reads.fq -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tests/data/bamfilter_test_all_reads_from_contig.reads.fq -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/data +creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks/assemble.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks/clean.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks/progcheck.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks/bam2reads.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks/version.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks/all.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks/get_dnaa.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks/__init__.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks/test.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks/minimus2.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks/merge.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks/mapreads.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks +creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks/__pycache__ +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks/__pycache__/version.cpython-312.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks/__pycache__ +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks/__pycache__/bam2reads.cpython-312.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks/__pycache__ +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks/__pycache__/merge.cpython-312.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks/__pycache__ +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks/__pycache__/get_dnaa.cpython-312.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks/__pycache__ +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks/__pycache__/all.cpython-312.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks/__pycache__ +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks/__pycache__ +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks/__pycache__/minimus2.cpython-312.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks/__pycache__ +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks/__pycache__/clean.cpython-312.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks/__pycache__ +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks/__pycache__/fixstart.cpython-312.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks/__pycache__ +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks/__pycache__/assemble.cpython-312.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks/__pycache__ +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks/__pycache__/mapreads.cpython-312.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks/__pycache__ +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks/__pycache__/progcheck.cpython-312.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks/__pycache__ +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks/fixstart.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/versions.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/__init__.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/external_progs.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/bamfilter.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/mapping.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/start_fixer.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/minimus2.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/program.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/assembly.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/merge.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/dnaa.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/__pycache__ -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/__pycache__/program.cpython-312.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/__pycache__ +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/__pycache__/bamfilter.cpython-312.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/__pycache__/start_fixer.cpython-312.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/__pycache__ +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/__pycache__/mapping.cpython-312.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/__pycache__ +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/__pycache__/merge.cpython-312.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/__pycache__ +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/__pycache__/dnaa.cpython-312.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/__pycache__ +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/__pycache__/program.cpython-312.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/__pycache__ -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/__pycache__/bamfilter.cpython-312.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/__pycache__ +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/__pycache__/minimus2.cpython-312.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/__pycache__/assembly.cpython-312.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/__pycache__ -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/__pycache__/assemble.cpython-312.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/__pycache__ -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/__pycache__/common.cpython-312.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/__pycache__ -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/__pycache__/dnaa.cpython-312.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/__pycache__ -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/__pycache__/merge.cpython-312.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/__pycache__/versions.cpython-312.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/__pycache__ -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/__pycache__/mapping.cpython-312.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/__pycache__/clean.cpython-312.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/__pycache__ -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/__pycache__/minimus2.cpython-312.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/__pycache__ copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/__pycache__/external_progs.cpython-312.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/__pycache__ +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/__pycache__/assemble.cpython-312.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/__pycache__ +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/__pycache__/common.cpython-312.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/__pycache__ creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/data/test_make_data.sh -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/data/test_ref.fa.fai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/data/test_ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/data/test_contigs.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/data/test_for_reads.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/data -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/data/test_reads.fq.gz -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/data copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/data/dnaA.fasta -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/data -creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks/__init__.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks/bam2reads.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks/all.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks/assemble.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks/merge.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks/fixstart.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks/test.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks -creating /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks/__pycache__ -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks/__pycache__/mapreads.cpython-312.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks/__pycache__ -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks/__pycache__/all.cpython-312.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks/__pycache__ -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks/__pycache__/bam2reads.cpython-312.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks/__pycache__ -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks/__pycache__ -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks/__pycache__/version.cpython-312.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks/__pycache__ -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks/__pycache__/progcheck.cpython-312.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks/__pycache__ -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks/__pycache__/assemble.cpython-312.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks/__pycache__ -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks/__pycache__/merge.cpython-312.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks/__pycache__ -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks/__pycache__/fixstart.cpython-312.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks/__pycache__ -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks/__pycache__/get_dnaa.cpython-312.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks/__pycache__ -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks/__pycache__/clean.cpython-312.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks/__pycache__ -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks/__pycache__/minimus2.cpython-312.pyc -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks/__pycache__ -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks/version.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks/progcheck.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks/clean.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks/minimus2.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks/get_dnaa.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/tasks/mapreads.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/clean.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/dnaa.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator -copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/minimus2.py -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator -byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/mapping.py to mapping.cpython-312.pyc +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/data/test_reads.fq.gz -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/data/test_ref.fa.fai -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/data/test_make_data.sh -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/data/test_for_reads.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/data +copying /build/reproducible-path/circlator-1.5.6/.pybuild/cpython3_3.12/build/circlator/data/test_ref.fa -> /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/data byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/assemble.py to assemble.cpython-312.pyc -byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/start_fixer.py to start_fixer.cpython-312.pyc -byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/assembly.py to assembly.cpython-312.pyc -byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/versions.py to versions.cpython-312.pyc -byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/external_progs_test.py to external_progs_test.cpython-312.pyc -byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/dnaa_test.py to dnaa_test.cpython-312.pyc -byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/common_test.py to common_test.cpython-312.pyc -byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/start_fixer_test.py to start_fixer_test.cpython-312.pyc +byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/clean.py to clean.cpython-312.pyc +byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/common.py to common.cpython-312.pyc byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/assembly_test.py to assembly_test.cpython-312.pyc -byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/assemble_test.py to assemble_test.cpython-312.pyc -byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/mapping_test.py to mapping_test.cpython-312.pyc byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/clean_test.py to clean_test.cpython-312.pyc -byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/merge_test.py to merge_test.cpython-312.pyc +byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/common_test.py to common_test.cpython-312.pyc +byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/external_progs_test.py to external_progs_test.cpython-312.pyc +byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/assemble_test.py to assemble_test.cpython-312.pyc +byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/dnaa_test.py to dnaa_test.cpython-312.pyc byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/minimus2_test.py to minimus2_test.cpython-312.pyc +byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/mapping_test.py to mapping_test.cpython-312.pyc byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/bamfilter_test.py to bamfilter_test.cpython-312.pyc -byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/bamfilter.py to bamfilter.cpython-312.pyc -byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/merge.py to merge.cpython-312.pyc -byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/common.py to common.cpython-312.pyc -byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/external_progs.py to external_progs.cpython-312.pyc -byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/program.py to program.cpython-312.pyc -byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/start_fixer_test.py to start_fixer_test.cpython-312.pyc +byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tests/merge_test.py to merge_test.cpython-312.pyc +byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks/assemble.py to assemble.cpython-312.pyc +byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks/clean.py to clean.cpython-312.pyc +byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks/progcheck.py to progcheck.cpython-312.pyc byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks/bam2reads.py to bam2reads.cpython-312.pyc +byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks/version.py to version.cpython-312.pyc byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks/all.py to all.cpython-312.pyc -byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks/assemble.py to assemble.cpython-312.pyc -byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks/merge.py to merge.cpython-312.pyc -byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks/fixstart.py to fixstart.cpython-312.pyc +byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks/get_dnaa.py to get_dnaa.cpython-312.pyc +byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks/test.py to test.cpython-312.pyc -byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks/version.py to version.cpython-312.pyc -byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks/progcheck.py to progcheck.cpython-312.pyc -byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks/clean.py to clean.cpython-312.pyc byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks/minimus2.py to minimus2.cpython-312.pyc -byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks/get_dnaa.py to get_dnaa.cpython-312.pyc +byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks/merge.py to merge.cpython-312.pyc byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks/mapreads.py to mapreads.cpython-312.pyc -byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/clean.py to clean.cpython-312.pyc -byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/dnaa.py to dnaa.cpython-312.pyc +byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/tasks/fixstart.py to fixstart.cpython-312.pyc +byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/versions.py to versions.cpython-312.pyc +byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/external_progs.py to external_progs.cpython-312.pyc +byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/bamfilter.py to bamfilter.cpython-312.pyc +byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/mapping.py to mapping.cpython-312.pyc +byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/start_fixer.py to start_fixer.cpython-312.pyc byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/minimus2.py to minimus2.cpython-312.pyc +byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/program.py to program.cpython-312.pyc +byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/assembly.py to assembly.cpython-312.pyc +byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/merge.py to merge.cpython-312.pyc +byte-compiling /build/reproducible-path/circlator-1.5.6/debian/circlator/usr/lib/python3.12/dist-packages/circlator/dnaa.py to dnaa.cpython-312.pyc running install_egg_info running egg_info writing circlator.egg-info/PKG-INFO @@ -2593,12 +2629,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3689454/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3689454/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3543995 and its subdirectories -I: Current time: Sun Dec 29 04:31:53 -12 2024 -I: pbuilder-time-stamp: 1735489913 +I: removing directory /srv/workspace/pbuilder/3689454 and its subdirectories +I: Current time: Sun Feb 1 12:59:06 +14 2026 +I: pbuilder-time-stamp: 1769900346