Diff of the two buildlogs: -- --- b1/build.log 2025-11-10 10:05:32.005000811 +0000 +++ b2/build.log 2025-11-10 10:07:46.317147397 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Dec 13 04:24:12 -12 2026 -I: pbuilder-time-stamp: 1797179052 +I: Current time: Tue Nov 11 00:05:33 +14 2025 +I: pbuilder-time-stamp: 1762769133 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -25,53 +25,85 @@ dpkg-source: info: applying cmake-4.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3945803/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3562208/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Nov 10 10:05 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3562208/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3562208/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 nocheck' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='2452b34415c440e8a36e8aff76ef9dde' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3945803' - PS1='# ' - PS2='> ' + INVOCATION_ID=cebe53ed10f6461cb3fec8ed6634e4fe + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3562208 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.n34wfKtx/pbuilderrc_66ZT --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.n34wfKtx/b1 --logfile b1/build.log ciftilib_1.6.0-5.dsc' - SUDO_GID='111' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.n34wfKtx/pbuilderrc_RZvw --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.n34wfKtx/b2 --logfile b2/build.log ciftilib_1.6.0-5.dsc' + SUDO_GID=110 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos15-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3945803/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3562208/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -311,7 +343,7 @@ Get: 188 http://deb.debian.org/debian unstable/main amd64 libxml++2.6-2v5 amd64 2.42.3-2+b1 [82.5 kB] Get: 189 http://deb.debian.org/debian unstable/main amd64 libxml2-dev amd64 2.15.1+dfsg-0.3 [744 kB] Get: 190 http://deb.debian.org/debian unstable/main amd64 libxml++2.6-dev amd64 2.42.3-2+b1 [47.8 kB] -Fetched 147 MB in 3s (50.4 MB/s) +Fetched 147 MB in 3s (51.5 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19866 files and directories currently installed.) @@ -941,8 +973,8 @@ Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' -Local time is now: Sun Dec 13 16:26:23 UTC 2026. -Universal Time is now: Sun Dec 13 16:26:23 UTC 2026. +Local time is now: Mon Nov 10 10:07:08 UTC 2025. +Universal Time is now: Mon Nov 10 10:07:08 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libboost-atomic1.83.0:amd64 (1.83.0-5) ... @@ -1108,7 +1140,11 @@ Solving dependencies... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/reproducible-path/ciftilib-1.6.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ciftilib_1.6.0-5_source.changes +I: user script /srv/workspace/pbuilder/3562208/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/3562208/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/ciftilib-1.6.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../ciftilib_1.6.0-5_source.changes dpkg-buildpackage: info: source package ciftilib dpkg-buildpackage: info: source version 1.6.0-5 dpkg-buildpackage: info: source distribution unstable @@ -1125,7 +1161,7 @@ debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/ciftilib-1.6.0' dh_auto_configure -- -DBUILD_SHARED_LIBS=ON -DIGNORE_QT=ON -DCMAKE_POLICY_VERSION_MINIMUM=3.5 - cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBUILD_SHARED_LIBS=ON -DIGNORE_QT=ON -DCMAKE_POLICY_VERSION_MINIMUM=3.5 .. + cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBUILD_TESTING:BOOL=OFF -DBUILD_SHARED_LIBS=ON -DIGNORE_QT=ON -DCMAKE_POLICY_VERSION_MINIMUM=3.5 .. CMake Deprecation Warning at CMakeLists.txt:1 (CMAKE_MINIMUM_REQUIRED): Compatibility with CMake < 3.10 will be removed from a future version of CMake. @@ -1182,11 +1218,12 @@ -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") --- Configuring done (9.3s) +-- Configuring done (1.7s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: + BUILD_TESTING CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_POLICY_VERSION_MINIMUM @@ -1198,7 +1235,7 @@ debian/rules override_dh_auto_build-indep make[1]: Entering directory '/build/reproducible-path/ciftilib-1.6.0' dh_auto_build -- doc - cd obj-x86_64-linux-gnu && make -j42 INSTALL="install --strip-program=true" doc VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j40 INSTALL="install --strip-program=true" doc VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/ciftilib-1.6.0 -B/build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 doc @@ -1908,7 +1945,7 @@ make[2]: Leaving directory '/build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu' make[1]: Leaving directory '/build/reproducible-path/ciftilib-1.6.0' dh_auto_build -Nlibcifti-doc - cd obj-x86_64-linux-gnu && make -j42 INSTALL="install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j40 INSTALL="install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/ciftilib-1.6.0 -B/build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu//CMakeFiles/progress.marks @@ -1920,56 +1957,102 @@ make[3]: Leaving directory '/build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu' make -f CMakeFiles/Cifti.dir/build.make CMakeFiles/Cifti.dir/build make[3]: Entering directory '/build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu' -[ 3%] Building CXX object CMakeFiles/Cifti.dir/src/Cifti/CiftiBrainModelsMap.cxx.o -[ 6%] Building CXX object CMakeFiles/Cifti.dir/src/CiftiFile.cxx.o -[ 10%] Building CXX object CMakeFiles/Cifti.dir/src/NiftiIO.cxx.o -[ 16%] Building CXX object CMakeFiles/Cifti.dir/src/Cifti/CiftiParcelsMap.cxx.o -[ 20%] Building CXX object CMakeFiles/Cifti.dir/src/Cifti/CiftiLabelsMap.cxx.o -[ 20%] Building CXX object CMakeFiles/Cifti.dir/src/Cifti/CiftiSeriesMap.cxx.o -[ 23%] Building CXX object CMakeFiles/Cifti.dir/src/Nifti/NiftiHeader.cxx.o -/usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCIFTILIB_BOOST_NO_CANONICAL -DCIFTILIB_BOOST_NO_FSV3 -DCIFTILIB_BOOST_NO_TRY_LEXICAL -DCIFTILIB_HAVE_ZLIB -DCIFTILIB_USE_XMLPP -DCifti_EXPORTS -I/usr/include/libxml++-2.6 -I/usr/lib/x86_64-linux-gnu/libxml++-2.6/include -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/libxml2 -I/build/reproducible-path/ciftilib-1.6.0/src -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ciftilib-1.6.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -std=gnu++11 -fPIC -MD -MT CMakeFiles/Cifti.dir/src/Cifti/CiftiBrainModelsMap.cxx.o -MF CMakeFiles/Cifti.dir/src/Cifti/CiftiBrainModelsMap.cxx.o.d -o CMakeFiles/Cifti.dir/src/Cifti/CiftiBrainModelsMap.cxx.o -c /build/reproducible-path/ciftilib-1.6.0/src/Cifti/CiftiBrainModelsMap.cxx +[ 3%] Building CXX object CMakeFiles/Cifti.dir/src/Cifti/CiftiMappingType.cxx.o +[ 6%] Building CXX object CMakeFiles/Cifti.dir/src/Cifti/CiftiSeriesMap.cxx.o +[ 13%] Building CXX object CMakeFiles/Cifti.dir/src/CiftiFile.cxx.o +[ 23%] Building CXX object CMakeFiles/Cifti.dir/src/Cifti/CiftiXML.cxx.o +[ 26%] Building CXX object CMakeFiles/Cifti.dir/src/Cifti/CiftiParcelsMap.cxx.o +/usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCIFTILIB_BOOST_NO_CANONICAL -DCIFTILIB_BOOST_NO_FSV3 -DCIFTILIB_BOOST_NO_TRY_LEXICAL -DCIFTILIB_HAVE_ZLIB -DCIFTILIB_USE_XMLPP -DCifti_EXPORTS -I/usr/include/libxml++-2.6 -I/usr/lib/x86_64-linux-gnu/libxml++-2.6/include -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/libxml2 -I/build/reproducible-path/ciftilib-1.6.0/src -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ciftilib-1.6.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -std=gnu++11 -fPIC -MD -MT CMakeFiles/Cifti.dir/src/Cifti/CiftiMappingType.cxx.o -MF CMakeFiles/Cifti.dir/src/Cifti/CiftiMappingType.cxx.o.d -o CMakeFiles/Cifti.dir/src/Cifti/CiftiMappingType.cxx.o -c /build/reproducible-path/ciftilib-1.6.0/src/Cifti/CiftiMappingType.cxx +[ 26%] Building CXX object CMakeFiles/Cifti.dir/src/NiftiIO.cxx.o +[ 26%] Building CXX object CMakeFiles/Cifti.dir/src/Nifti/NiftiHeader.cxx.o [ 26%] Building CXX object CMakeFiles/Cifti.dir/src/Cifti/CiftiVersion.cxx.o -[ 30%] Building CXX object CMakeFiles/Cifti.dir/src/Cifti/Label.cxx.o -[ 33%] Building CXX object CMakeFiles/Cifti.dir/src/Cifti/CiftiXML.cxx.o +[ 30%] Building CXX object CMakeFiles/Cifti.dir/src/Cifti/CiftiBrainModelsMap.cxx.o /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCIFTILIB_BOOST_NO_CANONICAL -DCIFTILIB_BOOST_NO_FSV3 -DCIFTILIB_BOOST_NO_TRY_LEXICAL -DCIFTILIB_HAVE_ZLIB -DCIFTILIB_USE_XMLPP -DCifti_EXPORTS -I/usr/include/libxml++-2.6 -I/usr/lib/x86_64-linux-gnu/libxml++-2.6/include -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/libxml2 -I/build/reproducible-path/ciftilib-1.6.0/src -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ciftilib-1.6.0=. -fstack-protector-strong -fstack-clash-protection 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-D_FORTIFY_SOURCE=2 -W -Wall -std=gnu++11 -fPIC -MD -MT CMakeFiles/Cifti.dir/src/Common/MathFunctions.cxx.o -MF CMakeFiles/Cifti.dir/src/Common/MathFunctions.cxx.o.d -o CMakeFiles/Cifti.dir/src/Common/MathFunctions.cxx.o -c /build/reproducible-path/ciftilib-1.6.0/src/Common/MathFunctions.cxx /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCIFTILIB_BOOST_NO_CANONICAL -DCIFTILIB_BOOST_NO_FSV3 -DCIFTILIB_BOOST_NO_TRY_LEXICAL -DCIFTILIB_HAVE_ZLIB -DCIFTILIB_USE_XMLPP -DCifti_EXPORTS -I/usr/include/libxml++-2.6 -I/usr/lib/x86_64-linux-gnu/libxml++-2.6/include -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/libxml2 -I/build/reproducible-path/ciftilib-1.6.0/src -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ciftilib-1.6.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -std=gnu++11 -fPIC -MD -MT CMakeFiles/Cifti.dir/src/Common/Vector3D.cxx.o -MF CMakeFiles/Cifti.dir/src/Common/Vector3D.cxx.o.d -o CMakeFiles/Cifti.dir/src/Common/Vector3D.cxx.o -c /build/reproducible-path/ciftilib-1.6.0/src/Common/Vector3D.cxx +/usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCIFTILIB_BOOST_NO_CANONICAL -DCIFTILIB_BOOST_NO_FSV3 -DCIFTILIB_BOOST_NO_TRY_LEXICAL -DCIFTILIB_HAVE_ZLIB -DCIFTILIB_USE_XMLPP -DCifti_EXPORTS -I/usr/include/libxml++-2.6 -I/usr/lib/x86_64-linux-gnu/libxml++-2.6/include -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/libxml2 -I/build/reproducible-path/ciftilib-1.6.0/src -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ciftilib-1.6.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -std=gnu++11 -fPIC -MD -MT CMakeFiles/Cifti.dir/src/Common/XmlAdapter.cxx.o -MF CMakeFiles/Cifti.dir/src/Common/XmlAdapter.cxx.o.d -o CMakeFiles/Cifti.dir/src/Common/XmlAdapter.cxx.o -c /build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.cxx +[ 76%] Building CXX object CMakeFiles/Cifti.dir/src/Common/CiftiException.cxx.o +/usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCIFTILIB_BOOST_NO_CANONICAL -DCIFTILIB_BOOST_NO_FSV3 -DCIFTILIB_BOOST_NO_TRY_LEXICAL -DCIFTILIB_HAVE_ZLIB -DCIFTILIB_USE_XMLPP -DCifti_EXPORTS -I/usr/include/libxml++-2.6 -I/usr/lib/x86_64-linux-gnu/libxml++-2.6/include -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/libxml2 -I/build/reproducible-path/ciftilib-1.6.0/src -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ciftilib-1.6.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -std=gnu++11 -fPIC -MD -MT CMakeFiles/Cifti.dir/src/Common/CiftiException.cxx.o -MF CMakeFiles/Cifti.dir/src/Common/CiftiException.cxx.o.d -o CMakeFiles/Cifti.dir/src/Common/CiftiException.cxx.o -c /build/reproducible-path/ciftilib-1.6.0/src/Common/CiftiException.cxx In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:55, from /build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:54, - from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/LabelTable.h:38, - from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/LabelTable.cxx:34: + from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/CiftiMappingType.h:33, + from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/CiftiMappingType.cxx:28: +/usr/include/libxml++-2.6/libxml++/parsers/saxparser.h:247:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 247 | std::auto_ptr<_xmlSAXHandler> sax_handler_; + | ^~~~~~~~ +In file included from /usr/include/c++/15/memory:80, + from /usr/include/libxml++-2.6/libxml++/parsers/saxparser.h:14: +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:56: +/usr/include/libxml++-2.6/libxml++/parsers/textreader.h:300:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 300 | std::auto_ptr propertyreader; + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:71: +/usr/include/libxml++-2.6/libxml++/relaxngschema.h:116:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 116 | std::auto_ptr pimpl_; + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:72: +/usr/include/libxml++-2.6/libxml++/xsdschema.h:107:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 107 | std::auto_ptr pimpl_; + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:75: +/usr/include/libxml++-2.6/libxml++/validators/relaxngvalidator.h:172:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 172 | std::auto_ptr pimpl_; + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:77: +/usr/include/libxml++-2.6/libxml++/validators/xsdvalidator.h:162:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 162 | std::auto_ptr pimpl_; + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:55, + from /build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:54, + from /build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.cxx:28: /usr/include/libxml++-2.6/libxml++/parsers/saxparser.h:247:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 247 | std::auto_ptr<_xmlSAXHandler> sax_handler_; | ^~~~~~~~ @@ -2071,11 +2154,69 @@ /usr/include/libxml2/libxml/tree.h:115:14: note: declared here 115 | xmlChar *content XML_DEPRECATED_MEMBER; | ^~~~~~~ +/build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h: In member function 'std::vector cifti::XmlWriter::getXmlData() const': +/build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:128:45: warning: '_xmlBuffer::use' is deprecated [-Wdeprecated-declarations] + 128 | std::vector ret(m_bufPtr->use);//this includes the null terminator? + | ^~~ +In file included from /usr/include/libxml2/libxml/xmlIO.h:20, + from /usr/include/libxml2/libxml/xmlwriter.h:21, + from /build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:56: +/usr/include/libxml2/libxml/tree.h:121:18: note: declared here + 121 | unsigned int use XML_DEPRECATED_MEMBER; + | ^~~ +/build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:128:45: warning: '_xmlBuffer::use' is deprecated [-Wdeprecated-declarations] + 128 | std::vector ret(m_bufPtr->use);//this includes the null terminator? + | ^~~ +/usr/include/libxml2/libxml/tree.h:121:18: note: declared here + 121 | unsigned int use XML_DEPRECATED_MEMBER; + | ^~~ +/build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:128:45: warning: '_xmlBuffer::use' is deprecated [-Wdeprecated-declarations] + 128 | std::vector ret(m_bufPtr->use);//this includes the null terminator? + | ^~~ +/usr/include/libxml2/libxml/tree.h:121:18: note: declared here + 121 | unsigned int use XML_DEPRECATED_MEMBER; + | ^~~ +/build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:129:52: warning: '_xmlBuffer::use' is deprecated [-Wdeprecated-declarations] + 129 | for (unsigned int i = 0; i < m_bufPtr->use; ++i) + | ^~~ +/usr/include/libxml2/libxml/tree.h:121:18: note: declared here + 121 | unsigned int use XML_DEPRECATED_MEMBER; + | ^~~ +/build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:129:52: warning: '_xmlBuffer::use' is deprecated [-Wdeprecated-declarations] + 129 | for (unsigned int i = 0; i < m_bufPtr->use; ++i) + | ^~~ +/usr/include/libxml2/libxml/tree.h:121:18: note: declared here + 121 | unsigned int use XML_DEPRECATED_MEMBER; + | ^~~ +/build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:129:52: warning: '_xmlBuffer::use' is deprecated [-Wdeprecated-declarations] + 129 | for (unsigned int i = 0; i < m_bufPtr->use; ++i) + | ^~~ +/usr/include/libxml2/libxml/tree.h:121:18: note: declared here + 121 | unsigned int use XML_DEPRECATED_MEMBER; + | ^~~ +/build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:131:36: warning: '_xmlBuffer::content' is deprecated [-Wdeprecated-declarations] + 131 | ret[i] = m_bufPtr->content[i]; + | ^~~~~~~ +/usr/include/libxml2/libxml/tree.h:115:14: note: declared here + 115 | xmlChar *content XML_DEPRECATED_MEMBER; + | ^~~~~~~ +/build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:131:36: warning: '_xmlBuffer::content' is deprecated [-Wdeprecated-declarations] + 131 | ret[i] = m_bufPtr->content[i]; + | ^~~~~~~ +/usr/include/libxml2/libxml/tree.h:115:14: note: declared here + 115 | xmlChar *content XML_DEPRECATED_MEMBER; + | ^~~~~~~ +/build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:131:36: warning: '_xmlBuffer::content' is deprecated [-Wdeprecated-declarations] + 131 | ret[i] = m_bufPtr->content[i]; + | ^~~~~~~ +/usr/include/libxml2/libxml/tree.h:115:14: note: declared here + 115 | xmlChar *content XML_DEPRECATED_MEMBER; + | ^~~~~~~ In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:55, from /build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:54, from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/CiftiMappingType.h:33, - from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/CiftiLabelsMap.h:31, - from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/CiftiLabelsMap.cxx:28: + from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/CiftiSeriesMap.h:31, + from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/CiftiSeriesMap.cxx:28: /usr/include/libxml++-2.6/libxml++/parsers/saxparser.h:247:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 247 | std::auto_ptr<_xmlSAXHandler> sax_handler_; | ^~~~~~~~ @@ -2105,24 +2246,10 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:75: -/usr/include/libxml++-2.6/libxml++/validators/relaxngvalidator.h:172:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 172 | std::auto_ptr pimpl_; - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:77: -/usr/include/libxml++-2.6/libxml++/validators/xsdvalidator.h:162:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 162 | std::auto_ptr pimpl_; - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:55, from /build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:54, - from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/VolumeSpace.h:33, - from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/VolumeSpace.cxx:28: + from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/LabelTable.h:38, + from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/LabelTable.cxx:34: /usr/include/libxml++-2.6/libxml++/parsers/saxparser.h:247:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 247 | std::auto_ptr<_xmlSAXHandler> sax_handler_; | ^~~~~~~~ @@ -2131,14 +2258,10 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:55, - from /build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:54, - from /build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.cxx:28: -/usr/include/libxml++-2.6/libxml++/parsers/saxparser.h:247:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 247 | std::auto_ptr<_xmlSAXHandler> sax_handler_; +In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:75: +/usr/include/libxml++-2.6/libxml++/validators/relaxngvalidator.h:172:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 172 | std::auto_ptr pimpl_; | ^~~~~~~~ -In file included from /usr/include/c++/15/memory:80, - from /usr/include/libxml++-2.6/libxml++/parsers/saxparser.h:14: /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -2149,27 +2272,6 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:71: -/usr/include/libxml++-2.6/libxml++/relaxngschema.h:116:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 116 | std::auto_ptr pimpl_; - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:72: -/usr/include/libxml++-2.6/libxml++/xsdschema.h:107:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 107 | std::auto_ptr pimpl_; - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:75: -/usr/include/libxml++-2.6/libxml++/validators/relaxngvalidator.h:172:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 172 | std::auto_ptr pimpl_; - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:77: /usr/include/libxml++-2.6/libxml++/validators/xsdvalidator.h:162:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 162 | std::auto_ptr pimpl_; @@ -2177,13 +2279,6 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:56: -/usr/include/libxml++-2.6/libxml++/parsers/textreader.h:300:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 300 | std::auto_ptr propertyreader; - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:71: /usr/include/libxml++-2.6/libxml++/relaxngschema.h:116:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 116 | std::auto_ptr pimpl_; @@ -2214,9 +2309,8 @@ | ^~~~~~~~ In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:55, from /build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:54, - from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/CiftiMappingType.h:33, - from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/CiftiBrainModelsMap.h:31, - from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/CiftiBrainModelsMap.cxx:28: + from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/VolumeSpace.h:33, + from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/VolumeSpace.cxx:28: /usr/include/libxml++-2.6/libxml++/parsers/saxparser.h:247:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 247 | std::auto_ptr<_xmlSAXHandler> sax_handler_; | ^~~~~~~~ @@ -2246,20 +2340,6 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:75: -/usr/include/libxml++-2.6/libxml++/validators/relaxngvalidator.h:172:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 172 | std::auto_ptr pimpl_; - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:77: -/usr/include/libxml++-2.6/libxml++/validators/xsdvalidator.h:162:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 162 | std::auto_ptr pimpl_; - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ /build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h: In member function 'std::vector cifti::XmlWriter::getXmlData() const': /build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:128:45: warning: '_xmlBuffer::use' is deprecated [-Wdeprecated-declarations] 128 | std::vector ret(m_bufPtr->use);//this includes the null terminator? @@ -2282,21 +2362,50 @@ /usr/include/libxml2/libxml/tree.h:121:18: note: declared here 121 | unsigned int use XML_DEPRECATED_MEMBER; | ^~~ +/build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h: In member function 'std::vector cifti::XmlWriter::getXmlData() const': +/build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:128:45: warning: '_xmlBuffer::use' is deprecated [-Wdeprecated-declarations] + 128 | std::vector ret(m_bufPtr->use);//this includes the null terminator? + | ^~~ +In file included from /usr/include/libxml2/libxml/xmlIO.h:20, + from /usr/include/libxml2/libxml/xmlwriter.h:21, + from /build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:56: +/usr/include/libxml2/libxml/tree.h:121:18: note: declared here + 121 | unsigned int use XML_DEPRECATED_MEMBER; + | ^~~ /build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:129:52: warning: '_xmlBuffer::use' is deprecated [-Wdeprecated-declarations] 129 | for (unsigned int i = 0; i < m_bufPtr->use; ++i) | ^~~ /usr/include/libxml2/libxml/tree.h:121:18: note: declared here 121 | unsigned int use XML_DEPRECATED_MEMBER; | ^~~ +/build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:128:45: warning: '_xmlBuffer::use' is deprecated [-Wdeprecated-declarations] + 128 | std::vector ret(m_bufPtr->use);//this includes the null terminator? + | ^~~ +/usr/include/libxml2/libxml/tree.h:121:18: note: declared here + 121 | unsigned int use XML_DEPRECATED_MEMBER; + | ^~~ /build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:129:52: warning: '_xmlBuffer::use' is deprecated [-Wdeprecated-declarations] 129 | for (unsigned int i = 0; i < m_bufPtr->use; ++i) | ^~~ /usr/include/libxml2/libxml/tree.h:121:18: note: declared here 121 | unsigned int use XML_DEPRECATED_MEMBER; | ^~~ +In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:75: +/usr/include/libxml++-2.6/libxml++/validators/relaxngvalidator.h:172:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 172 | std::auto_ptr pimpl_; + | ^~~~~~~~ /build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:129:52: warning: '_xmlBuffer::use' is deprecated [-Wdeprecated-declarations] 129 | for (unsigned int i = 0; i < m_bufPtr->use; ++i) | ^~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +/usr/include/libxml2/libxml/tree.h:121:18: note: declared here + 121 | unsigned int use XML_DEPRECATED_MEMBER; + | ^~~ +/build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:128:45: warning: '_xmlBuffer::use' is deprecated [-Wdeprecated-declarations] + 128 | std::vector ret(m_bufPtr->use);//this includes the null terminator? + | ^~~ /usr/include/libxml2/libxml/tree.h:121:18: note: declared here 121 | unsigned int use XML_DEPRECATED_MEMBER; | ^~~ @@ -2306,6 +2415,33 @@ /usr/include/libxml2/libxml/tree.h:115:14: note: declared here 115 | xmlChar *content XML_DEPRECATED_MEMBER; | ^~~~~~~ +/build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:129:52: warning: '_xmlBuffer::use' is deprecated [-Wdeprecated-declarations] + 129 | for (unsigned int i = 0; i < m_bufPtr->use; ++i) + | ^~~ +/usr/include/libxml2/libxml/tree.h:121:18: note: declared here + 121 | unsigned int use XML_DEPRECATED_MEMBER; + | ^~~ +/build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:131:36: warning: '_xmlBuffer::content' is deprecated [-Wdeprecated-declarations] + 131 | ret[i] = m_bufPtr->content[i]; + | ^~~~~~~ +/build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:129:52: warning: '_xmlBuffer::use' is deprecated [-Wdeprecated-declarations] + 129 | for (unsigned int i = 0; i < m_bufPtr->use; ++i) + | ^~~ +/usr/include/libxml2/libxml/tree.h:121:18: note: declared here + 121 | unsigned int use XML_DEPRECATED_MEMBER; + | ^~~ +/build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:129:52: warning: '_xmlBuffer::use' is deprecated [-Wdeprecated-declarations] + 129 | for (unsigned int i = 0; i < m_bufPtr->use; ++i) + | ^~~ +/usr/include/libxml2/libxml/tree.h:121:18: note: declared here + 121 | unsigned int use XML_DEPRECATED_MEMBER; + | ^~~ +/usr/include/libxml2/libxml/tree.h:115:14: note: declared here + 115 | xmlChar *content XML_DEPRECATED_MEMBER; + | ^~~~~~~ +/build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:131:36: warning: '_xmlBuffer::content' is deprecated [-Wdeprecated-declarations] + 131 | ret[i] = m_bufPtr->content[i]; + | ^~~~~~~ /build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:131:36: warning: '_xmlBuffer::content' is deprecated [-Wdeprecated-declarations] 131 | ret[i] = m_bufPtr->content[i]; | ^~~~~~~ @@ -2318,6 +2454,22 @@ /usr/include/libxml2/libxml/tree.h:115:14: note: declared here 115 | xmlChar *content XML_DEPRECATED_MEMBER; | ^~~~~~~ +/usr/include/libxml2/libxml/tree.h:115:14: note: declared here + 115 | xmlChar *content XML_DEPRECATED_MEMBER; + | ^~~~~~~ +/build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:131:36: warning: '_xmlBuffer::content' is deprecated [-Wdeprecated-declarations] + 131 | ret[i] = m_bufPtr->content[i]; + | ^~~~~~~ +/usr/include/libxml2/libxml/tree.h:115:14: note: declared here + 115 | xmlChar *content XML_DEPRECATED_MEMBER; + | ^~~~~~~ +In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:77: +/usr/include/libxml++-2.6/libxml++/validators/xsdvalidator.h:162:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 162 | std::auto_ptr pimpl_; + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h: In member function 'std::vector cifti::XmlWriter::getXmlData() const': /build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:128:45: warning: '_xmlBuffer::use' is deprecated [-Wdeprecated-declarations] 128 | std::vector ret(m_bufPtr->use);//this includes the null terminator? @@ -2378,8 +2530,9 @@ | ^~~~~~~ In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:55, from /build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:54, - from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/MetaData.h:34, - from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/MetaData.cxx:32: + from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/CiftiMappingType.h:33, + from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/CiftiParcelsMap.h:31, + from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/CiftiParcelsMap.cxx:28: /usr/include/libxml++-2.6/libxml++/parsers/saxparser.h:247:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 247 | std::auto_ptr<_xmlSAXHandler> sax_handler_; | ^~~~~~~~ @@ -2406,6 +2559,150 @@ /usr/include/libxml++-2.6/libxml++/xsdschema.h:107:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 107 | std::auto_ptr pimpl_; | ^~~~~~~~ +In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:55, + from /build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:54, + from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/CiftiMappingType.h:33, + from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/CiftiLabelsMap.h:31, + from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/CiftiLabelsMap.cxx:28: +/usr/include/libxml++-2.6/libxml++/parsers/saxparser.h:247:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 247 | std::auto_ptr<_xmlSAXHandler> sax_handler_; + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/c++/15/memory:80, + from /usr/include/libxml++-2.6/libxml++/parsers/saxparser.h:14: +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:75: +/usr/include/libxml++-2.6/libxml++/validators/relaxngvalidator.h:172:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 172 | std::auto_ptr pimpl_; + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:56: +/usr/include/libxml++-2.6/libxml++/parsers/textreader.h:300:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 300 | std::auto_ptr propertyreader; + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:55, + from /build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:54, + from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/CiftiMappingType.h:33, + from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/CiftiBrainModelsMap.h:31, + from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/CiftiBrainModelsMap.cxx:28: +/usr/include/libxml++-2.6/libxml++/parsers/saxparser.h:247:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 247 | std::auto_ptr<_xmlSAXHandler> sax_handler_; + | ^~~~~~~~ +In file included from /usr/include/c++/15/memory:80, + from /usr/include/libxml++-2.6/libxml++/parsers/saxparser.h:14: +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:77: +/usr/include/libxml++-2.6/libxml++/validators/xsdvalidator.h:162:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 162 | std::auto_ptr pimpl_; + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:71: +/usr/include/libxml++-2.6/libxml++/relaxngschema.h:116:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 116 | std::auto_ptr pimpl_; + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:56: +/usr/include/libxml++-2.6/libxml++/parsers/textreader.h:300:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 300 | std::auto_ptr propertyreader; + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:55, + from /build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:54, + from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/CiftiMappingType.h:33, + from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/CiftiScalarsMap.h:31, + from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/CiftiScalarsMap.cxx:28: +/usr/include/libxml++-2.6/libxml++/parsers/saxparser.h:247:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 247 | std::auto_ptr<_xmlSAXHandler> sax_handler_; + | ^~~~~~~~ +In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:72: +/usr/include/libxml++-2.6/libxml++/xsdschema.h:107:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 107 | std::auto_ptr pimpl_; + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/c++/15/memory:80, + from /usr/include/libxml++-2.6/libxml++/parsers/saxparser.h:14: +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:71: +/usr/include/libxml++-2.6/libxml++/relaxngschema.h:116:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 116 | std::auto_ptr pimpl_; + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:75: +/usr/include/libxml++-2.6/libxml++/validators/relaxngvalidator.h:172:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 172 | std::auto_ptr pimpl_; + | ^~~~~~~~ +In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:72: +/usr/include/libxml++-2.6/libxml++/xsdschema.h:107:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 107 | std::auto_ptr pimpl_; + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:56: +/usr/include/libxml++-2.6/libxml++/parsers/textreader.h:300:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 300 | std::auto_ptr propertyreader; + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:75: +/usr/include/libxml++-2.6/libxml++/validators/relaxngvalidator.h:172:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 172 | std::auto_ptr pimpl_; + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:77: +/usr/include/libxml++-2.6/libxml++/validators/xsdvalidator.h:162:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 162 | std::auto_ptr pimpl_; + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:71: +/usr/include/libxml++-2.6/libxml++/relaxngschema.h:116:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 116 | std::auto_ptr pimpl_; + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:77: +/usr/include/libxml++-2.6/libxml++/validators/xsdvalidator.h:162:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 162 | std::auto_ptr pimpl_; + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:72: +/usr/include/libxml++-2.6/libxml++/xsdschema.h:107:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 107 | std::auto_ptr pimpl_; + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -2539,54 +2836,6 @@ /usr/include/libxml2/libxml/tree.h:115:14: note: declared here 115 | xmlChar *content XML_DEPRECATED_MEMBER; | ^~~~~~~ -In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:55, - from /build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:54, - from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/CiftiMappingType.h:33, - from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/CiftiXML.h:31, - from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/CiftiXML.cxx:28: -/usr/include/libxml++-2.6/libxml++/parsers/saxparser.h:247:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 247 | std::auto_ptr<_xmlSAXHandler> sax_handler_; - | ^~~~~~~~ -In file included from /usr/include/c++/15/memory:80, - from /usr/include/libxml++-2.6/libxml++/parsers/saxparser.h:14: -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:56: -/usr/include/libxml++-2.6/libxml++/parsers/textreader.h:300:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 300 | std::auto_ptr propertyreader; - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:71: -/usr/include/libxml++-2.6/libxml++/relaxngschema.h:116:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 116 | std::auto_ptr pimpl_; - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:72: -/usr/include/libxml++-2.6/libxml++/xsdschema.h:107:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 107 | std::auto_ptr pimpl_; - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:75: -/usr/include/libxml++-2.6/libxml++/validators/relaxngvalidator.h:172:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 172 | std::auto_ptr pimpl_; - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:77: -/usr/include/libxml++-2.6/libxml++/validators/xsdvalidator.h:162:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 162 | std::auto_ptr pimpl_; - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ /build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h: In member function 'std::vector cifti::XmlWriter::getXmlData() const': /build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:128:45: warning: '_xmlBuffer::use' is deprecated [-Wdeprecated-declarations] 128 | std::vector ret(m_bufPtr->use);//this includes the null terminator? @@ -2706,8 +2955,8 @@ In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:55, from /build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:54, from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/CiftiMappingType.h:33, - from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/CiftiParcelsMap.h:31, - from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/CiftiParcelsMap.cxx:28: + from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/CiftiXML.h:31, + from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/CiftiXML.cxx:28: /usr/include/libxml++-2.6/libxml++/parsers/saxparser.h:247:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 247 | std::auto_ptr<_xmlSAXHandler> sax_handler_; | ^~~~~~~~ @@ -2811,8 +3060,8 @@ | ^~~~~~~ In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:55, from /build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:54, - from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/CiftiMappingType.h:33, - from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/CiftiMappingType.cxx:28: + from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/MetaData.h:34, + from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/MetaData.cxx:32: /usr/include/libxml++-2.6/libxml++/parsers/saxparser.h:247:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 247 | std::auto_ptr<_xmlSAXHandler> sax_handler_; | ^~~~~~~~ @@ -2917,21 +3166,9 @@ In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:55, from /build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:54, from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/CiftiMappingType.h:33, - from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/CiftiScalarsMap.h:31, - from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/CiftiScalarsMap.cxx:28: -/usr/include/libxml++-2.6/libxml++/parsers/saxparser.h:247:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 247 | std::auto_ptr<_xmlSAXHandler> sax_handler_; - | ^~~~~~~~ -In file included from /usr/include/c++/15/memory:80, - from /usr/include/libxml++-2.6/libxml++/parsers/saxparser.h:14: -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:55, - from /build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:54, - from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/CiftiMappingType.h:33, - from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/CiftiSeriesMap.h:31, - from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/CiftiSeriesMap.cxx:28: + from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/CiftiXML.h:31, + from /build/reproducible-path/ciftilib-1.6.0/src/CiftiFile.h:34, + from /build/reproducible-path/ciftilib-1.6.0/src/CiftiFile.cxx:28: /usr/include/libxml++-2.6/libxml++/parsers/saxparser.h:247:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 247 | std::auto_ptr<_xmlSAXHandler> sax_handler_; | ^~~~~~~~ @@ -2975,99 +3212,6 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:56: -/usr/include/libxml++-2.6/libxml++/parsers/textreader.h:300:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 300 | std::auto_ptr propertyreader; - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:71: -/usr/include/libxml++-2.6/libxml++/relaxngschema.h:116:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 116 | std::auto_ptr pimpl_; - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:72: -/usr/include/libxml++-2.6/libxml++/xsdschema.h:107:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 107 | std::auto_ptr pimpl_; - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:75: -/usr/include/libxml++-2.6/libxml++/validators/relaxngvalidator.h:172:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 172 | std::auto_ptr pimpl_; - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:77: -/usr/include/libxml++-2.6/libxml++/validators/xsdvalidator.h:162:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 162 | std::auto_ptr pimpl_; - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h: In member function 'std::vector cifti::XmlWriter::getXmlData() const': -/build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:128:45: warning: '_xmlBuffer::use' is deprecated [-Wdeprecated-declarations] - 128 | std::vector ret(m_bufPtr->use);//this includes the null terminator? - | ^~~ -In file included from /usr/include/libxml2/libxml/xmlIO.h:20, - from /usr/include/libxml2/libxml/xmlwriter.h:21, - from /build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:56: -/usr/include/libxml2/libxml/tree.h:121:18: note: declared here - 121 | unsigned int use XML_DEPRECATED_MEMBER; - | ^~~ -/build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:128:45: warning: '_xmlBuffer::use' is deprecated [-Wdeprecated-declarations] - 128 | std::vector ret(m_bufPtr->use);//this includes the null terminator? - | ^~~ -/usr/include/libxml2/libxml/tree.h:121:18: note: declared here - 121 | unsigned int use XML_DEPRECATED_MEMBER; - | ^~~ -/build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:128:45: warning: '_xmlBuffer::use' is deprecated [-Wdeprecated-declarations] - 128 | std::vector ret(m_bufPtr->use);//this includes the null terminator? - | ^~~ -/usr/include/libxml2/libxml/tree.h:121:18: note: declared here - 121 | unsigned int use XML_DEPRECATED_MEMBER; - | ^~~ -/build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:129:52: warning: '_xmlBuffer::use' is deprecated [-Wdeprecated-declarations] - 129 | for (unsigned int i = 0; i < m_bufPtr->use; ++i) - | ^~~ -/usr/include/libxml2/libxml/tree.h:121:18: note: declared here - 121 | unsigned int use XML_DEPRECATED_MEMBER; - | ^~~ -/build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:129:52: warning: '_xmlBuffer::use' is deprecated [-Wdeprecated-declarations] - 129 | for (unsigned int i = 0; i < m_bufPtr->use; ++i) - | ^~~ -/usr/include/libxml2/libxml/tree.h:121:18: note: declared here - 121 | unsigned int use XML_DEPRECATED_MEMBER; - | ^~~ -/build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:129:52: warning: '_xmlBuffer::use' is deprecated [-Wdeprecated-declarations] - 129 | for (unsigned int i = 0; i < m_bufPtr->use; ++i) - | ^~~ -/usr/include/libxml2/libxml/tree.h:121:18: note: declared here - 121 | unsigned int use XML_DEPRECATED_MEMBER; - | ^~~ -/build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:131:36: warning: '_xmlBuffer::content' is deprecated [-Wdeprecated-declarations] - 131 | ret[i] = m_bufPtr->content[i]; - | ^~~~~~~ -/usr/include/libxml2/libxml/tree.h:115:14: note: declared here - 115 | xmlChar *content XML_DEPRECATED_MEMBER; - | ^~~~~~~ -/build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:131:36: warning: '_xmlBuffer::content' is deprecated [-Wdeprecated-declarations] - 131 | ret[i] = m_bufPtr->content[i]; - | ^~~~~~~ -/usr/include/libxml2/libxml/tree.h:115:14: note: declared here - 115 | xmlChar *content XML_DEPRECATED_MEMBER; - | ^~~~~~~ -/build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:131:36: warning: '_xmlBuffer::content' is deprecated [-Wdeprecated-declarations] - 131 | ret[i] = m_bufPtr->content[i]; - | ^~~~~~~ -/usr/include/libxml2/libxml/tree.h:115:14: note: declared here - 115 | xmlChar *content XML_DEPRECATED_MEMBER; - | ^~~~~~~ /build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h: In member function 'std::vector cifti::XmlWriter::getXmlData() const': /build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:128:45: warning: '_xmlBuffer::use' is deprecated [-Wdeprecated-declarations] 128 | std::vector ret(m_bufPtr->use);//this includes the null terminator? @@ -3126,12 +3270,58 @@ /usr/include/libxml2/libxml/tree.h:115:14: note: declared here 115 | xmlChar *content XML_DEPRECATED_MEMBER; | ^~~~~~~ +/build/reproducible-path/ciftilib-1.6.0/src/CiftiFile.cxx: In function 'cifti::AString {anonymous}::pathToAbsolute(const cifti::AString&)': +/build/reproducible-path/ciftilib-1.6.0/src/CiftiFile.cxx:103:36: warning: 'boost::filesystem::path boost::filesystem::complete(const path&)' is deprecated: Use absolute() instead 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-ffile-prefix-map=/build/reproducible-path/ciftilib-1.6.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -std=gnu++11 -MD -MT example/CMakeFiles/xmlinfo.dir/xmlinfo.cxx.o -MF CMakeFiles/xmlinfo.dir/xmlinfo.cxx.o.d -o CMakeFiles/xmlinfo.dir/xmlinfo.cxx.o -c /build/reproducible-path/ciftilib-1.6.0/example/xmlinfo.cxx +cd /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCIFTILIB_BOOST_NO_CANONICAL -DCIFTILIB_BOOST_NO_FSV3 -DCIFTILIB_BOOST_NO_TRY_LEXICAL -DCIFTILIB_HAVE_ZLIB -DCIFTILIB_USE_XMLPP -I/usr/include/libxml++-2.6 -I/usr/lib/x86_64-linux-gnu/libxml++-2.6/include -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/libxml2 -I/build/reproducible-path/ciftilib-1.6.0/example -I/build/reproducible-path/ciftilib-1.6.0/src -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ciftilib-1.6.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -std=gnu++11 -MD -MT example/CMakeFiles/datatype.dir/datatype.cxx.o -MF CMakeFiles/datatype.dir/datatype.cxx.o.d -o CMakeFiles/datatype.dir/datatype.cxx.o -c /build/reproducible-path/ciftilib-1.6.0/example/datatype.cxx +cd /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCIFTILIB_BOOST_NO_CANONICAL -DCIFTILIB_BOOST_NO_FSV3 -DCIFTILIB_BOOST_NO_TRY_LEXICAL -DCIFTILIB_HAVE_ZLIB -DCIFTILIB_USE_XMLPP -I/usr/include/libxml++-2.6 -I/usr/lib/x86_64-linux-gnu/libxml++-2.6/include -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/libxml2 -I/build/reproducible-path/ciftilib-1.6.0/example -I/build/reproducible-path/ciftilib-1.6.0/src -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ciftilib-1.6.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -std=gnu++11 -MD -MT example/CMakeFiles/rewrite.dir/rewrite.cxx.o -MF CMakeFiles/rewrite.dir/rewrite.cxx.o.d -o CMakeFiles/rewrite.dir/rewrite.cxx.o -c /build/reproducible-path/ciftilib-1.6.0/example/rewrite.cxx In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:55, from /build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:54, from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/CiftiMappingType.h:33, from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/CiftiXML.h:31, from /build/reproducible-path/ciftilib-1.6.0/src/CiftiFile.h:34, - from /build/reproducible-path/ciftilib-1.6.0/src/CiftiFile.cxx:28: + from /build/reproducible-path/ciftilib-1.6.0/example/xmlinfo.cxx:1: /usr/include/libxml++-2.6/libxml++/parsers/saxparser.h:247:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 247 | std::auto_ptr<_xmlSAXHandler> sax_handler_; | ^~~~~~~~ @@ -3233,58 +3423,12 @@ /usr/include/libxml2/libxml/tree.h:115:14: note: declared here 115 | xmlChar *content XML_DEPRECATED_MEMBER; | ^~~~~~~ -/build/reproducible-path/ciftilib-1.6.0/src/CiftiFile.cxx: In function 'cifti::AString {anonymous}::pathToAbsolute(const cifti::AString&)': -/build/reproducible-path/ciftilib-1.6.0/src/CiftiFile.cxx:103:36: warning: 'boost::filesystem::path 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-/usr/include/boost/filesystem/operations.hpp:403:13: note: declared here - 403 | inline path complete(path const& p) - | ^~~~~~~~ -[ 80%] Linking CXX shared library libCifti.so -/usr/bin/cmake -E cmake_link_script CMakeFiles/Cifti.dir/link.txt --verbose=1 -/usr/bin/c++ -fPIC -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ciftilib-1.6.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wl,--dependency-file=CMakeFiles/Cifti.dir/link.d -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -shared -Wl,-soname,libCifti.so.0 -o libCifti.so.1.5 CMakeFiles/Cifti.dir/src/CiftiFile.cxx.o CMakeFiles/Cifti.dir/src/NiftiIO.cxx.o CMakeFiles/Cifti.dir/src/Nifti/NiftiHeader.cxx.o CMakeFiles/Cifti.dir/src/Cifti/CiftiXML.cxx.o CMakeFiles/Cifti.dir/src/Cifti/CiftiVersion.cxx.o CMakeFiles/Cifti.dir/src/Cifti/CiftiMappingType.cxx.o CMakeFiles/Cifti.dir/src/Cifti/CiftiBrainModelsMap.cxx.o 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directory '/build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu' -[ 86%] Building CXX object example/CMakeFiles/datatype.dir/datatype.cxx.o -[ 86%] Building CXX object example/CMakeFiles/xmlinfo.dir/xmlinfo.cxx.o -cd /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCIFTILIB_BOOST_NO_CANONICAL -DCIFTILIB_BOOST_NO_FSV3 -DCIFTILIB_BOOST_NO_TRY_LEXICAL -DCIFTILIB_HAVE_ZLIB -DCIFTILIB_USE_XMLPP -I/usr/include/libxml++-2.6 -I/usr/lib/x86_64-linux-gnu/libxml++-2.6/include -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/libxml2 -I/build/reproducible-path/ciftilib-1.6.0/example -I/build/reproducible-path/ciftilib-1.6.0/src -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ciftilib-1.6.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -std=gnu++11 -MD -MT example/CMakeFiles/xmlinfo.dir/xmlinfo.cxx.o -MF CMakeFiles/xmlinfo.dir/xmlinfo.cxx.o.d -o CMakeFiles/xmlinfo.dir/xmlinfo.cxx.o -c /build/reproducible-path/ciftilib-1.6.0/example/xmlinfo.cxx -[ 90%] Building CXX object example/CMakeFiles/rewrite.dir/rewrite.cxx.o -cd /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCIFTILIB_BOOST_NO_CANONICAL -DCIFTILIB_BOOST_NO_FSV3 -DCIFTILIB_BOOST_NO_TRY_LEXICAL -DCIFTILIB_HAVE_ZLIB -DCIFTILIB_USE_XMLPP -I/usr/include/libxml++-2.6 -I/usr/lib/x86_64-linux-gnu/libxml++-2.6/include -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/libxml2 -I/build/reproducible-path/ciftilib-1.6.0/example -I/build/reproducible-path/ciftilib-1.6.0/src -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ciftilib-1.6.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -std=gnu++11 -MD -MT example/CMakeFiles/datatype.dir/datatype.cxx.o -MF CMakeFiles/datatype.dir/datatype.cxx.o.d -o CMakeFiles/datatype.dir/datatype.cxx.o -c /build/reproducible-path/ciftilib-1.6.0/example/datatype.cxx -cd /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DCIFTILIB_BOOST_NO_CANONICAL -DCIFTILIB_BOOST_NO_FSV3 -DCIFTILIB_BOOST_NO_TRY_LEXICAL -DCIFTILIB_HAVE_ZLIB -DCIFTILIB_USE_XMLPP -I/usr/include/libxml++-2.6 -I/usr/lib/x86_64-linux-gnu/libxml++-2.6/include -I/usr/include/glibmm-2.4 -I/usr/lib/x86_64-linux-gnu/glibmm-2.4/include -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sigc++-2.0 -I/usr/lib/x86_64-linux-gnu/sigc++-2.0/include -I/usr/include/libxml2 -I/build/reproducible-path/ciftilib-1.6.0/example -I/build/reproducible-path/ciftilib-1.6.0/src -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ciftilib-1.6.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -std=gnu++11 -MD -MT example/CMakeFiles/rewrite.dir/rewrite.cxx.o -MF CMakeFiles/rewrite.dir/rewrite.cxx.o.d -o CMakeFiles/rewrite.dir/rewrite.cxx.o -c /build/reproducible-path/ciftilib-1.6.0/example/rewrite.cxx In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:55, from /build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:54, from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/CiftiMappingType.h:33, from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/CiftiXML.h:31, from /build/reproducible-path/ciftilib-1.6.0/src/CiftiFile.h:34, - from /build/reproducible-path/ciftilib-1.6.0/example/xmlinfo.cxx:1: + from /build/reproducible-path/ciftilib-1.6.0/example/datatype.cxx:1: /usr/include/libxml++-2.6/libxml++/parsers/saxparser.h:247:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 247 | std::auto_ptr<_xmlSAXHandler> sax_handler_; | ^~~~~~~~ @@ -3293,6 +3437,27 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:55, + from /build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:54, + from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/CiftiMappingType.h:33, + from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/CiftiXML.h:31, + from /build/reproducible-path/ciftilib-1.6.0/src/CiftiFile.h:34, + from /build/reproducible-path/ciftilib-1.6.0/example/rewrite.cxx:1: +/usr/include/libxml++-2.6/libxml++/parsers/saxparser.h:247:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 247 | std::auto_ptr<_xmlSAXHandler> sax_handler_; + | ^~~~~~~~ +In file included from /usr/include/c++/15/memory:80, + from /usr/include/libxml++-2.6/libxml++/parsers/saxparser.h:14: +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:56: +/usr/include/libxml++-2.6/libxml++/parsers/textreader.h:300:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 300 | std::auto_ptr propertyreader; + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:56: /usr/include/libxml++-2.6/libxml++/parsers/textreader.h:300:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 300 | std::auto_ptr propertyreader; @@ -3314,51 +3479,30 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:75: -/usr/include/libxml++-2.6/libxml++/validators/relaxngvalidator.h:172:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 172 | std::auto_ptr pimpl_; - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:77: -/usr/include/libxml++-2.6/libxml++/validators/xsdvalidator.h:162:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 162 | std::auto_ptr pimpl_; +In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:71: +/usr/include/libxml++-2.6/libxml++/relaxngschema.h:116:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 116 | std::auto_ptr pimpl_; | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:55, - from /build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:54, - from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/CiftiMappingType.h:33, - from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/CiftiXML.h:31, - from /build/reproducible-path/ciftilib-1.6.0/src/CiftiFile.h:34, - from /build/reproducible-path/ciftilib-1.6.0/example/rewrite.cxx:1: -/usr/include/libxml++-2.6/libxml++/parsers/saxparser.h:247:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 247 | std::auto_ptr<_xmlSAXHandler> sax_handler_; +In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:72: +/usr/include/libxml++-2.6/libxml++/xsdschema.h:107:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 107 | std::auto_ptr pimpl_; | ^~~~~~~~ -In file included from /usr/include/c++/15/memory:80, - from /usr/include/libxml++-2.6/libxml++/parsers/saxparser.h:14: /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:56: -/usr/include/libxml++-2.6/libxml++/parsers/textreader.h:300:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 300 | std::auto_ptr propertyreader; - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:71: -/usr/include/libxml++-2.6/libxml++/relaxngschema.h:116:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 116 | std::auto_ptr pimpl_; +In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:75: +/usr/include/libxml++-2.6/libxml++/validators/relaxngvalidator.h:172:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 172 | std::auto_ptr pimpl_; | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:72: -/usr/include/libxml++-2.6/libxml++/xsdschema.h:107:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 107 | std::auto_ptr pimpl_; +In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:77: +/usr/include/libxml++-2.6/libxml++/validators/xsdvalidator.h:162:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 162 | std::auto_ptr pimpl_; | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; @@ -3493,516 +3637,25 @@ /usr/include/libxml2/libxml/tree.h:115:14: note: declared here 115 | xmlChar *content XML_DEPRECATED_MEMBER; | ^~~~~~~ -In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:55, - from /build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:54, - from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/CiftiMappingType.h:33, - from /build/reproducible-path/ciftilib-1.6.0/src/Cifti/CiftiXML.h:31, - from /build/reproducible-path/ciftilib-1.6.0/src/CiftiFile.h:34, - from /build/reproducible-path/ciftilib-1.6.0/example/datatype.cxx:1: -/usr/include/libxml++-2.6/libxml++/parsers/saxparser.h:247:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 247 | std::auto_ptr<_xmlSAXHandler> sax_handler_; - | ^~~~~~~~ -In file included from /usr/include/c++/15/memory:80, - from /usr/include/libxml++-2.6/libxml++/parsers/saxparser.h:14: -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:56: -/usr/include/libxml++-2.6/libxml++/parsers/textreader.h:300:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 300 | std::auto_ptr propertyreader; - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:71: -/usr/include/libxml++-2.6/libxml++/relaxngschema.h:116:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 116 | std::auto_ptr pimpl_; - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:72: -/usr/include/libxml++-2.6/libxml++/xsdschema.h:107:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 107 | std::auto_ptr pimpl_; - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:75: -/usr/include/libxml++-2.6/libxml++/validators/relaxngvalidator.h:172:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 172 | std::auto_ptr pimpl_; - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -In file included from /usr/include/libxml++-2.6/libxml++/libxml++.h:77: -/usr/include/libxml++-2.6/libxml++/validators/xsdvalidator.h:162:8: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 162 | std::auto_ptr pimpl_; - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h: In member function 'std::vector cifti::XmlWriter::getXmlData() const': -/build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:128:45: warning: '_xmlBuffer::use' is deprecated [-Wdeprecated-declarations] - 128 | std::vector ret(m_bufPtr->use);//this includes the null terminator? - | ^~~ -In file included from /usr/include/libxml2/libxml/xmlIO.h:20, - from /usr/include/libxml2/libxml/xmlwriter.h:21, - from /build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:56: -/usr/include/libxml2/libxml/tree.h:121:18: note: declared here - 121 | unsigned int use XML_DEPRECATED_MEMBER; - | ^~~ -/build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:128:45: warning: '_xmlBuffer::use' is deprecated [-Wdeprecated-declarations] - 128 | std::vector ret(m_bufPtr->use);//this includes the null terminator? - | ^~~ -/usr/include/libxml2/libxml/tree.h:121:18: note: declared here - 121 | unsigned int use XML_DEPRECATED_MEMBER; - | ^~~ -/build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:128:45: warning: '_xmlBuffer::use' is deprecated [-Wdeprecated-declarations] - 128 | std::vector ret(m_bufPtr->use);//this includes the null terminator? - | ^~~ -/usr/include/libxml2/libxml/tree.h:121:18: note: declared here - 121 | unsigned int use XML_DEPRECATED_MEMBER; - | ^~~ -/build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:129:52: warning: '_xmlBuffer::use' is deprecated [-Wdeprecated-declarations] - 129 | for (unsigned int i = 0; i < m_bufPtr->use; ++i) - | ^~~ -/usr/include/libxml2/libxml/tree.h:121:18: note: declared here - 121 | unsigned int use XML_DEPRECATED_MEMBER; - | ^~~ -/build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:129:52: warning: '_xmlBuffer::use' is deprecated [-Wdeprecated-declarations] - 129 | for (unsigned int i = 0; i < m_bufPtr->use; ++i) - | ^~~ -/usr/include/libxml2/libxml/tree.h:121:18: note: declared here - 121 | unsigned int use XML_DEPRECATED_MEMBER; - | ^~~ -/build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:129:52: warning: '_xmlBuffer::use' is deprecated [-Wdeprecated-declarations] - 129 | for (unsigned int i = 0; i < m_bufPtr->use; ++i) - | ^~~ -/usr/include/libxml2/libxml/tree.h:121:18: note: declared here - 121 | unsigned int use XML_DEPRECATED_MEMBER; - | ^~~ -/build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:131:36: warning: '_xmlBuffer::content' is deprecated [-Wdeprecated-declarations] - 131 | ret[i] = m_bufPtr->content[i]; - | ^~~~~~~ -/usr/include/libxml2/libxml/tree.h:115:14: note: declared here - 115 | xmlChar *content XML_DEPRECATED_MEMBER; - | ^~~~~~~ -/build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:131:36: warning: '_xmlBuffer::content' is deprecated [-Wdeprecated-declarations] - 131 | ret[i] = m_bufPtr->content[i]; - | ^~~~~~~ -/usr/include/libxml2/libxml/tree.h:115:14: note: declared here - 115 | xmlChar *content XML_DEPRECATED_MEMBER; - | ^~~~~~~ -/build/reproducible-path/ciftilib-1.6.0/src/Common/XmlAdapter.h:131:36: warning: '_xmlBuffer::content' is deprecated [-Wdeprecated-declarations] - 131 | ret[i] = m_bufPtr->content[i]; - | ^~~~~~~ -/usr/include/libxml2/libxml/tree.h:115:14: note: declared here - 115 | xmlChar *content XML_DEPRECATED_MEMBER; - | ^~~~~~~ -[ 93%] Linking CXX executable rewrite -cd /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/rewrite.dir/link.txt --verbose=1 -[ 96%] Linking CXX executable datatype +[ 93%] Linking CXX executable datatype cd /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/datatype.dir/link.txt --verbose=1 +[ 96%] Linking CXX executable rewrite +cd /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/rewrite.dir/link.txt --verbose=1 +/usr/bin/c++ -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ciftilib-1.6.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -Wl,--dependency-file=CMakeFiles/datatype.dir/link.d CMakeFiles/datatype.dir/datatype.cxx.o -o datatype -Wl,-rpath,/build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu ../libCifti.so.1.5 -lxml++-2.6 -lglibmm-2.4 -lglib-2.0 -lsigc-2.0 -lxml2 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 -lz /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 +make[3]: Leaving directory '/build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu' [100%] Linking CXX executable xmlinfo +[100%] Built target datatype cd /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example && /usr/bin/cmake -E cmake_link_script CMakeFiles/xmlinfo.dir/link.txt --verbose=1 /usr/bin/c++ -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ciftilib-1.6.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -Wl,--dependency-file=CMakeFiles/rewrite.dir/link.d CMakeFiles/rewrite.dir/rewrite.cxx.o -o rewrite -Wl,-rpath,/build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu ../libCifti.so.1.5 -lxml++-2.6 -lglibmm-2.4 -lglib-2.0 -lsigc-2.0 -lxml2 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 -lz /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 make[3]: Leaving directory '/build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu' -/usr/bin/c++ -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ciftilib-1.6.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -Wl,--dependency-file=CMakeFiles/datatype.dir/link.d CMakeFiles/datatype.dir/datatype.cxx.o -o datatype -Wl,-rpath,/build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu ../libCifti.so.1.5 -lxml++-2.6 -lglibmm-2.4 -lglib-2.0 -lsigc-2.0 -lxml2 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 -lz /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 -make[3]: Leaving directory '/build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu' +[100%] Built target rewrite /usr/bin/c++ -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ciftilib-1.6.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -rdynamic -Wl,--dependency-file=CMakeFiles/xmlinfo.dir/link.d CMakeFiles/xmlinfo.dir/xmlinfo.cxx.o -o xmlinfo -Wl,-rpath,/build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu ../libCifti.so.1.5 -lxml++-2.6 -lglibmm-2.4 -lglib-2.0 -lsigc-2.0 -lxml2 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 -lz /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 make[3]: Leaving directory '/build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu' [100%] Built target xmlinfo -[100%] Built target datatype -[100%] Built target rewrite make[2]: Leaving directory '/build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu' - debian/rules override_dh_auto_test-arch -make[1]: Entering directory '/build/reproducible-path/ciftilib-1.6.0' -dh_auto_test --no-parallel - cd obj-x86_64-linux-gnu && make -j1 test ARGS\+=--verbose ARGS\+=-j1 -make[2]: Entering directory '/build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu' -Running tests... -/usr/bin/ctest --force-new-ctest-process --verbose -j1 -UpdateCTestConfiguration from :/build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/DartConfiguration.tcl -UpdateCTestConfiguration from :/build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/DartConfiguration.tcl -Test project /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu -Constructing a list of tests -Done constructing a list of tests -Updating test list for fixtures -Added 0 tests to meet fixture requirements -Checking test dependency graph... -Checking test dependency graph end -test 1 - Start 1: info-Conte69.MyelinAndCorrThickness.32k_fs_LR.dscalar.nii - -1: Test command: /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example/xmlinfo "/build/reproducible-path/ciftilib-1.6.0/example/data/Conte69.MyelinAndCorrThickness.32k_fs_LR.dscalar.nii" -1: Working Directory: /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example -1: Test timeout computed to be: 10000000 -1: Dimension 0: Scalars, length 2 -1: Index 0: MyelinMap_BC_decurv -1: Index 1: corrThickness -1: -1: Dimension 1: Brain Models, length 60951 -1: Surface CORTEX_LEFT: 30424 out of 32492 vertices -1: Surface CORTEX_RIGHT: 30527 out of 32492 vertices -1: - 1/35 Test #1: info-Conte69.MyelinAndCorrThickness.32k_fs_LR.dscalar.nii .................. Passed 0.17 sec -test 2 - Start 2: rewrite-little-Conte69.MyelinAndCorrThickness.32k_fs_LR.dscalar.nii - -2: Test command: /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example/rewrite "/build/reproducible-path/ciftilib-1.6.0/example/data/Conte69.MyelinAndCorrThickness.32k_fs_LR.dscalar.nii" "little-Conte69.MyelinAndCorrThickness.32k_fs_LR.dscalar.nii" "LITTLE" -2: Working Directory: /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example -2: Test timeout computed to be: 10000000 - 2/35 Test #2: rewrite-little-Conte69.MyelinAndCorrThickness.32k_fs_LR.dscalar.nii ........ Passed 0.22 sec -test 3 - Start 3: rewrite-little-md5-Conte69.MyelinAndCorrThickness.32k_fs_LR.dscalar.nii - -3: Test command: /usr/bin/cmake "-Dgood_sum=39ecfba4c1dade1a2ce3e95b325bd8b1" "-Dcheck_file=little-Conte69.MyelinAndCorrThickness.32k_fs_LR.dscalar.nii" "-P" "/build/reproducible-path/ciftilib-1.6.0/cmake/scripts/testmd5.cmake" -3: Working Directory: /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example -3: Test timeout computed to be: 10000000 - 3/35 Test #3: rewrite-little-md5-Conte69.MyelinAndCorrThickness.32k_fs_LR.dscalar.nii .... Passed 0.02 sec -test 4 - Start 4: rewrite-big-Conte69.MyelinAndCorrThickness.32k_fs_LR.dscalar.nii - -4: Test command: /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example/rewrite "/build/reproducible-path/ciftilib-1.6.0/example/data/Conte69.MyelinAndCorrThickness.32k_fs_LR.dscalar.nii" "big-Conte69.MyelinAndCorrThickness.32k_fs_LR.dscalar.nii" "BIG" -4: Working Directory: /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example -4: Test timeout computed to be: 10000000 - 4/35 Test #4: rewrite-big-Conte69.MyelinAndCorrThickness.32k_fs_LR.dscalar.nii ........... Passed 0.19 sec -test 6 - Start 6: datatype-Conte69.MyelinAndCorrThickness.32k_fs_LR.dscalar.nii - -6: Test command: /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example/datatype "/build/reproducible-path/ciftilib-1.6.0/example/data/Conte69.MyelinAndCorrThickness.32k_fs_LR.dscalar.nii" "datatype-Conte69.MyelinAndCorrThickness.32k_fs_LR.dscalar.nii" -6: Working Directory: /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example -6: Test timeout computed to be: 10000000 - 5/35 Test #6: datatype-Conte69.MyelinAndCorrThickness.32k_fs_LR.dscalar.nii .............. Passed 0.19 sec -test 5 - Start 5: rewrite-big-md5-Conte69.MyelinAndCorrThickness.32k_fs_LR.dscalar.nii - -5: Test command: /usr/bin/cmake "-Dgood_sum=a2581f76a94b7c4371d6970f1262e1bc" "-Dcheck_file=big-Conte69.MyelinAndCorrThickness.32k_fs_LR.dscalar.nii" "-P" "/build/reproducible-path/ciftilib-1.6.0/cmake/scripts/testmd5.cmake" -5: Working Directory: /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example -5: Test timeout computed to be: 10000000 - 6/35 Test #5: rewrite-big-md5-Conte69.MyelinAndCorrThickness.32k_fs_LR.dscalar.nii ....... Passed 0.02 sec -test 7 - Start 7: datatype-md5-Conte69.MyelinAndCorrThickness.32k_fs_LR.dscalar.nii - -7: Test command: /usr/bin/cmake "-Dgood_sum=6db4a73e4e11a1ac0a5e7cbfb56eff40" "-Dcheck_file=datatype-Conte69.MyelinAndCorrThickness.32k_fs_LR.dscalar.nii" "-P" "/build/reproducible-path/ciftilib-1.6.0/cmake/scripts/testmd5.cmake" -7: Working Directory: /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example -7: Test timeout computed to be: 10000000 - 7/35 Test #7: datatype-md5-Conte69.MyelinAndCorrThickness.32k_fs_LR.dscalar.nii .......... Passed 0.02 sec -test 8 - Start 8: info-Conte69.MyelinAndCorrThickness.32k_fs_LR.dtseries.nii - -8: Test command: /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example/xmlinfo "/build/reproducible-path/ciftilib-1.6.0/example/data/Conte69.MyelinAndCorrThickness.32k_fs_LR.dtseries.nii" -8: Working Directory: /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example -8: Test timeout computed to be: 10000000 -8: Dimension 0: Series, length 2 -8: Start: 0 -8: Step: 1 -8: Unit: SECOND -8: -8: Dimension 1: Brain Models, length 60951 -8: Surface CORTEX_LEFT: 30424 out of 32492 vertices -8: Surface CORTEX_RIGHT: 30527 out of 32492 vertices -8: - 8/35 Test #8: info-Conte69.MyelinAndCorrThickness.32k_fs_LR.dtseries.nii ................. Passed 0.08 sec -test 9 - Start 9: rewrite-little-Conte69.MyelinAndCorrThickness.32k_fs_LR.dtseries.nii - -9: Test command: /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example/rewrite "/build/reproducible-path/ciftilib-1.6.0/example/data/Conte69.MyelinAndCorrThickness.32k_fs_LR.dtseries.nii" "little-Conte69.MyelinAndCorrThickness.32k_fs_LR.dtseries.nii" "LITTLE" -9: Working Directory: /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example -9: Test timeout computed to be: 10000000 - 9/35 Test #9: rewrite-little-Conte69.MyelinAndCorrThickness.32k_fs_LR.dtseries.nii ....... Passed 0.23 sec -test 10 - Start 10: rewrite-little-md5-Conte69.MyelinAndCorrThickness.32k_fs_LR.dtseries.nii - -10: Test command: /usr/bin/cmake "-Dgood_sum=921a42e4181052ef4f211d389a2e9328" "-Dcheck_file=little-Conte69.MyelinAndCorrThickness.32k_fs_LR.dtseries.nii" "-P" "/build/reproducible-path/ciftilib-1.6.0/cmake/scripts/testmd5.cmake" -10: Working Directory: /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example -10: Test timeout computed to be: 10000000 -10/35 Test #10: rewrite-little-md5-Conte69.MyelinAndCorrThickness.32k_fs_LR.dtseries.nii ... Passed 0.02 sec -test 11 - Start 11: rewrite-big-Conte69.MyelinAndCorrThickness.32k_fs_LR.dtseries.nii - -11: Test command: /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example/rewrite "/build/reproducible-path/ciftilib-1.6.0/example/data/Conte69.MyelinAndCorrThickness.32k_fs_LR.dtseries.nii" "big-Conte69.MyelinAndCorrThickness.32k_fs_LR.dtseries.nii" "BIG" -11: Working Directory: /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example -11: Test timeout computed to be: 10000000 -11/35 Test #11: rewrite-big-Conte69.MyelinAndCorrThickness.32k_fs_LR.dtseries.nii .......... Passed 0.27 sec -test 13 - Start 13: datatype-Conte69.MyelinAndCorrThickness.32k_fs_LR.dtseries.nii - -13: Test command: /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example/datatype "/build/reproducible-path/ciftilib-1.6.0/example/data/Conte69.MyelinAndCorrThickness.32k_fs_LR.dtseries.nii" "datatype-Conte69.MyelinAndCorrThickness.32k_fs_LR.dtseries.nii" -13: Working Directory: /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example -13: Test timeout computed to be: 10000000 -12/35 Test #13: datatype-Conte69.MyelinAndCorrThickness.32k_fs_LR.dtseries.nii ............. Passed 0.19 sec -test 12 - Start 12: rewrite-big-md5-Conte69.MyelinAndCorrThickness.32k_fs_LR.dtseries.nii - -12: Test command: /usr/bin/cmake "-Dgood_sum=ca4cfb02fb7f0d8f167f546aab85e91d" "-Dcheck_file=big-Conte69.MyelinAndCorrThickness.32k_fs_LR.dtseries.nii" "-P" "/build/reproducible-path/ciftilib-1.6.0/cmake/scripts/testmd5.cmake" -12: Working Directory: /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example -12: Test timeout computed to be: 10000000 -13/35 Test #12: rewrite-big-md5-Conte69.MyelinAndCorrThickness.32k_fs_LR.dtseries.nii ...... Passed 0.02 sec -test 14 - Start 14: datatype-md5-Conte69.MyelinAndCorrThickness.32k_fs_LR.dtseries.nii - -14: Test command: /usr/bin/cmake "-Dgood_sum=f321156573ed8f165b208d84769bfd9a" "-Dcheck_file=datatype-Conte69.MyelinAndCorrThickness.32k_fs_LR.dtseries.nii" "-P" "/build/reproducible-path/ciftilib-1.6.0/cmake/scripts/testmd5.cmake" -14: Working Directory: /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example -14: Test timeout computed to be: 10000000 -14/35 Test #14: datatype-md5-Conte69.MyelinAndCorrThickness.32k_fs_LR.dtseries.nii ......... Passed 0.02 sec -test 15 - Start 15: info-Conte69.MyelinAndCorrThickness.32k_fs_LR.ptseries.nii - -15: Test command: /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example/xmlinfo "/build/reproducible-path/ciftilib-1.6.0/example/data/Conte69.MyelinAndCorrThickness.32k_fs_LR.ptseries.nii" -15: Working Directory: /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example -15: Test timeout computed to be: 10000000 -15: Dimension 0: Series, length 2 -15: Start: 0 -15: Step: 1 -15: Unit: SECOND -15: -15: Dimension 1: Parcels, length 54 -15: Index 0, name 'MEDIAL.WALL': 1529 vertices, 0 voxels -15: Index 1, name 'BA2_FRB08': 977 vertices, 0 voxels -15: Index 2, name 'BA1_FRB08': 425 vertices, 0 voxels -15: Index 3, name 'BA3b_FRB08': 841 vertices, 0 voxels -15: Index 4, name 'BA4p_FRB08': 715 vertices, 0 voxels -15: Index 5, name 'BA3a_FRB08': 579 vertices, 0 voxels -15: Index 6, name 'BA4a_FRB08': 926 vertices, 0 voxels -15: Index 7, name 'BA6_FRB08': 2857 vertices, 0 voxels -15: Index 8, name 'BA17_V1_FRB08': 1264 vertices, 0 voxels -15: Index 9, name 'BA45_FRB08': 459 vertices, 0 voxels -15: Index 10, name 'BA44_FRB08': 499 vertices, 0 voxels -15: Index 11, name 'hOc5_MT_FRB08': 184 vertices, 0 voxels -15: Index 12, name 'BA18_V2_FRB08': 1353 vertices, 0 voxels -15: Index 13, name 'V3A_SHM07': 164 vertices, 0 voxels -15: Index 14, name 'V3B_SHM07': 242 vertices, 0 voxels -15: Index 15, name 'LO1_KPO10': 108 vertices, 0 voxels -15: Index 16, name 'LO2_KPO10': 158 vertices, 0 voxels -15: Index 17, name 'PITd_KPO10': 118 vertices, 0 voxels -15: Index 18, name 'PITv_KPO10': 144 vertices, 0 voxels -15: Index 19, name 'OP1_BSW08': 940 vertices, 0 voxels -15: Index 20, name 'OP2_BSW08': 134 vertices, 0 voxels -15: Index 21, name 'OP3_BSW08': 238 vertices, 0 voxels -15: Index 22, name 'OP4_BSW08': 383 vertices, 0 voxels -15: Index 23, name 'IPS1_SHM07': 108 vertices, 0 voxels -15: Index 24, name 'IPS2_SHM07': 142 vertices, 0 voxels -15: Index 25, name 'IPS3_SHM07': 228 vertices, 0 voxels -15: Index 26, name 'IPS4_SHM07': 202 vertices, 0 voxels -15: Index 27, name 'V7_SHM07': 280 vertices, 0 voxels -15: Index 28, name 'V4v_SHM07': 171 vertices, 0 voxels -15: Index 29, name 'V3d_KPO10': 205 vertices, 0 voxels -15: Index 30, name '14c_OFP03': 44 vertices, 0 voxels -15: Index 31, name '13a_OFP03': 40 vertices, 0 voxels -15: Index 32, name '47s_OFP03': 422 vertices, 0 voxels -15: Index 33, name '14r_OFP03': 108 vertices, 0 voxels -15: Index 34, name '13m_OFP03': 206 vertices, 0 voxels -15: Index 35, name '13l_OFP03': 202 vertices, 0 voxels -15: Index 36, name '32pl_OFP03': 28 vertices, 0 voxels -15: Index 37, name '25_OFP03': 16 vertices, 0 voxels -15: Index 38, name '47m_OFP03': 400 vertices, 0 voxels -15: Index 39, name '47l_OFP03': 302 vertices, 0 voxels -15: Index 40, name 'Iai_OFP03': 306 vertices, 0 voxels -15: Index 41, name '10r_OFP03': 276 vertices, 0 voxels -15: Index 42, name '11m_OFP03': 184 vertices, 0 voxels -15: Index 43, name '11l_OFP03': 400 vertices, 0 voxels -15: Index 44, name '47r_OFP03': 518 vertices, 0 voxels -15: Index 45, name '10m_OFP03': 204 vertices, 0 voxels -15: Index 46, name 'Iam_OFP03': 30 vertices, 0 voxels -15: Index 47, name 'Ial_OFP03': 178 vertices, 0 voxels -15: Index 48, name '24_OFP03': 75 vertices, 0 voxels -15: Index 49, name 'Iapm_OFP03': 14 vertices, 0 voxels -15: Index 50, name '10p_OFP03': 960 vertices, 0 voxels -15: Index 51, name 'V6_PHG06': 144 vertices, 0 voxels -15: Index 52, name 'ER_FRB08': 206 vertices, 0 voxels -15: Index 53, name '13b_OFP03': 131 vertices, 0 voxels -15: -15/35 Test #15: info-Conte69.MyelinAndCorrThickness.32k_fs_LR.ptseries.nii ................. Passed 0.04 sec -test 16 - Start 16: rewrite-little-Conte69.MyelinAndCorrThickness.32k_fs_LR.ptseries.nii - -16: Test command: /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example/rewrite "/build/reproducible-path/ciftilib-1.6.0/example/data/Conte69.MyelinAndCorrThickness.32k_fs_LR.ptseries.nii" "little-Conte69.MyelinAndCorrThickness.32k_fs_LR.ptseries.nii" "LITTLE" -16: Working Directory: /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example -16: Test timeout computed to be: 10000000 -16/35 Test #16: rewrite-little-Conte69.MyelinAndCorrThickness.32k_fs_LR.ptseries.nii ....... Passed 0.06 sec -test 17 - Start 17: rewrite-little-md5-Conte69.MyelinAndCorrThickness.32k_fs_LR.ptseries.nii - -17: Test command: /usr/bin/cmake "-Dgood_sum=764c816004ebe23d188d98f9f29c7337" "-Dcheck_file=little-Conte69.MyelinAndCorrThickness.32k_fs_LR.ptseries.nii" "-P" "/build/reproducible-path/ciftilib-1.6.0/cmake/scripts/testmd5.cmake" -17: Working Directory: /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example -17: Test timeout computed to be: 10000000 -17/35 Test #17: rewrite-little-md5-Conte69.MyelinAndCorrThickness.32k_fs_LR.ptseries.nii ... Passed 0.02 sec -test 18 - Start 18: rewrite-big-Conte69.MyelinAndCorrThickness.32k_fs_LR.ptseries.nii - -18: Test command: /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example/rewrite "/build/reproducible-path/ciftilib-1.6.0/example/data/Conte69.MyelinAndCorrThickness.32k_fs_LR.ptseries.nii" "big-Conte69.MyelinAndCorrThickness.32k_fs_LR.ptseries.nii" "BIG" -18: Working Directory: /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example -18: Test timeout computed to be: 10000000 -18/35 Test #18: rewrite-big-Conte69.MyelinAndCorrThickness.32k_fs_LR.ptseries.nii .......... Passed 0.06 sec -test 20 - Start 20: datatype-Conte69.MyelinAndCorrThickness.32k_fs_LR.ptseries.nii - -20: Test command: /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example/datatype "/build/reproducible-path/ciftilib-1.6.0/example/data/Conte69.MyelinAndCorrThickness.32k_fs_LR.ptseries.nii" "datatype-Conte69.MyelinAndCorrThickness.32k_fs_LR.ptseries.nii" -20: Working Directory: /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example -20: Test timeout computed to be: 10000000 -19/35 Test #20: datatype-Conte69.MyelinAndCorrThickness.32k_fs_LR.ptseries.nii ............. Passed 0.06 sec -test 19 - Start 19: rewrite-big-md5-Conte69.MyelinAndCorrThickness.32k_fs_LR.ptseries.nii - -19: Test command: /usr/bin/cmake "-Dgood_sum=892c26e691fe62c4edf358f7f91942a3" "-Dcheck_file=big-Conte69.MyelinAndCorrThickness.32k_fs_LR.ptseries.nii" "-P" "/build/reproducible-path/ciftilib-1.6.0/cmake/scripts/testmd5.cmake" -19: Working Directory: /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example -19: Test timeout computed to be: 10000000 -20/35 Test #19: rewrite-big-md5-Conte69.MyelinAndCorrThickness.32k_fs_LR.ptseries.nii ...... Passed 0.02 sec -test 21 - Start 21: datatype-md5-Conte69.MyelinAndCorrThickness.32k_fs_LR.ptseries.nii - -21: Test command: /usr/bin/cmake "-Dgood_sum=794d60d9d397fe341e18313efeeac5ea" "-Dcheck_file=datatype-Conte69.MyelinAndCorrThickness.32k_fs_LR.ptseries.nii" "-P" "/build/reproducible-path/ciftilib-1.6.0/cmake/scripts/testmd5.cmake" -21: Working Directory: /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example -21: Test timeout computed to be: 10000000 -21/35 Test #21: datatype-md5-Conte69.MyelinAndCorrThickness.32k_fs_LR.ptseries.nii ......... Passed 0.02 sec -test 22 - Start 22: info-Conte69.parcellations_VGD11b.32k_fs_LR.dlabel.nii - -22: Test command: /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example/xmlinfo "/build/reproducible-path/ciftilib-1.6.0/example/data/Conte69.parcellations_VGD11b.32k_fs_LR.dlabel.nii" -22: Working Directory: /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example -22: Test timeout computed to be: 10000000 -22: Dimension 0: Labels, length 3 -22: Index 0: Composite Parcellation-lh (FRB08_OFP03_retinotopic) -22: Index 1: Brodmann lh (from colin.R via pals_R-to-fs_LR) -22: Index 2: MEDIAL WALL lh (fs_LR) -22: -22: Dimension 1: Brain Models, length 64984 -22: Surface CORTEX_LEFT: 32492 out of 32492 vertices -22: Surface CORTEX_RIGHT: 32492 out of 32492 vertices -22: -22/35 Test #22: info-Conte69.parcellations_VGD11b.32k_fs_LR.dlabel.nii ..................... Passed 0.11 sec -test 23 - Start 23: rewrite-little-Conte69.parcellations_VGD11b.32k_fs_LR.dlabel.nii - -23: Test command: /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example/rewrite "/build/reproducible-path/ciftilib-1.6.0/example/data/Conte69.parcellations_VGD11b.32k_fs_LR.dlabel.nii" "little-Conte69.parcellations_VGD11b.32k_fs_LR.dlabel.nii" "LITTLE" -23: Working Directory: /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example -23: Test timeout computed to be: 10000000 -23/35 Test #23: rewrite-little-Conte69.parcellations_VGD11b.32k_fs_LR.dlabel.nii ........... Passed 3.47 sec -test 24 - Start 24: rewrite-little-md5-Conte69.parcellations_VGD11b.32k_fs_LR.dlabel.nii - -24: Test command: /usr/bin/cmake "-Dgood_sum=6fabac021e377efd35dede7198feefd4" "-Dcheck_file=little-Conte69.parcellations_VGD11b.32k_fs_LR.dlabel.nii" "-P" "/build/reproducible-path/ciftilib-1.6.0/cmake/scripts/testmd5.cmake" -24: Working Directory: /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example -24: Test timeout computed to be: 10000000 -24/35 Test #24: rewrite-little-md5-Conte69.parcellations_VGD11b.32k_fs_LR.dlabel.nii ....... Passed 0.02 sec -test 25 - Start 25: rewrite-big-Conte69.parcellations_VGD11b.32k_fs_LR.dlabel.nii - -25: Test command: /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example/rewrite "/build/reproducible-path/ciftilib-1.6.0/example/data/Conte69.parcellations_VGD11b.32k_fs_LR.dlabel.nii" "big-Conte69.parcellations_VGD11b.32k_fs_LR.dlabel.nii" "BIG" -25: Working Directory: /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example -25: Test timeout computed to be: 10000000 -25/35 Test #25: rewrite-big-Conte69.parcellations_VGD11b.32k_fs_LR.dlabel.nii .............. Passed 0.47 sec -test 27 - Start 27: datatype-Conte69.parcellations_VGD11b.32k_fs_LR.dlabel.nii - -27: Test command: /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example/datatype "/build/reproducible-path/ciftilib-1.6.0/example/data/Conte69.parcellations_VGD11b.32k_fs_LR.dlabel.nii" "datatype-Conte69.parcellations_VGD11b.32k_fs_LR.dlabel.nii" -27: Working Directory: /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example -27: Test timeout computed to be: 10000000 -26/35 Test #27: datatype-Conte69.parcellations_VGD11b.32k_fs_LR.dlabel.nii ................. Passed 1.04 sec -test 26 - Start 26: rewrite-big-md5-Conte69.parcellations_VGD11b.32k_fs_LR.dlabel.nii - -26: Test command: /usr/bin/cmake "-Dgood_sum=e761d405c945e724b37f96e356dc19ad" "-Dcheck_file=big-Conte69.parcellations_VGD11b.32k_fs_LR.dlabel.nii" "-P" "/build/reproducible-path/ciftilib-1.6.0/cmake/scripts/testmd5.cmake" -26: Working Directory: /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example -26: Test timeout computed to be: 10000000 -27/35 Test #26: rewrite-big-md5-Conte69.parcellations_VGD11b.32k_fs_LR.dlabel.nii .......... Passed 0.02 sec -test 28 - Start 28: datatype-md5-Conte69.parcellations_VGD11b.32k_fs_LR.dlabel.nii - -28: Test command: /usr/bin/cmake "-Dgood_sum=ea43725139bd3e152197fdf22c5e72e7" "-Dcheck_file=datatype-Conte69.parcellations_VGD11b.32k_fs_LR.dlabel.nii" "-P" "/build/reproducible-path/ciftilib-1.6.0/cmake/scripts/testmd5.cmake" -28: Working Directory: /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example -28: Test timeout computed to be: 10000000 -28/35 Test #28: datatype-md5-Conte69.parcellations_VGD11b.32k_fs_LR.dlabel.nii ............. Passed 0.02 sec -test 29 - Start 29: info-ones.dscalar.nii - -29: Test command: /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example/xmlinfo "/build/reproducible-path/ciftilib-1.6.0/example/data/ones.dscalar.nii" -29: Working Directory: /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example -29: Test timeout computed to be: 10000000 -29: Dimension 0: Scalars, length 1 -29: Index 0: ones -29: -29: Dimension 1: Brain Models, length 91282 -29: Surface CORTEX_LEFT: 29696 out of 32492 vertices -29: Surface CORTEX_RIGHT: 29716 out of 32492 vertices -29: Voxels ACCUMBENS_LEFT: 135 voxels -29: Voxels ACCUMBENS_RIGHT: 140 voxels -29: Voxels AMYGDALA_LEFT: 315 voxels -29: Voxels AMYGDALA_RIGHT: 332 voxels -29: Voxels BRAIN_STEM: 3472 voxels -29: Voxels CAUDATE_LEFT: 728 voxels -29: Voxels CAUDATE_RIGHT: 755 voxels -29: Voxels CEREBELLUM_LEFT: 8709 voxels -29: Voxels CEREBELLUM_RIGHT: 9144 voxels -29: Voxels DIENCEPHALON_VENTRAL_LEFT: 706 voxels -29: Voxels DIENCEPHALON_VENTRAL_RIGHT: 712 voxels -29: Voxels HIPPOCAMPUS_LEFT: 764 voxels -29: Voxels HIPPOCAMPUS_RIGHT: 795 voxels -29: Voxels PALLIDUM_LEFT: 297 voxels -29: Voxels PALLIDUM_RIGHT: 260 voxels -29: Voxels PUTAMEN_LEFT: 1060 voxels -29: Voxels PUTAMEN_RIGHT: 1010 voxels -29: Voxels THALAMUS_LEFT: 1288 voxels -29: Voxels THALAMUS_RIGHT: 1248 voxels -29: -29/35 Test #29: info-ones.dscalar.nii ...................................................... Passed 0.16 sec -test 30 - Start 30: rewrite-little-ones.dscalar.nii - -30: Test command: /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example/rewrite "/build/reproducible-path/ciftilib-1.6.0/example/data/ones.dscalar.nii" "little-ones.dscalar.nii" "LITTLE" -30: Working Directory: /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example -30: Test timeout computed to be: 10000000 -30/35 Test #30: rewrite-little-ones.dscalar.nii ............................................ Passed 0.39 sec -test 31 - Start 31: rewrite-little-md5-ones.dscalar.nii - -31: Test command: /usr/bin/cmake "-Dgood_sum=fe0cbb768e26aa12a0e03990f4f50a30" "-Dcheck_file=little-ones.dscalar.nii" "-P" "/build/reproducible-path/ciftilib-1.6.0/cmake/scripts/testmd5.cmake" -31: Working Directory: /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example -31: Test timeout computed to be: 10000000 -31/35 Test #31: rewrite-little-md5-ones.dscalar.nii ........................................ Passed 0.02 sec -test 32 - Start 32: rewrite-big-ones.dscalar.nii - -32: Test command: /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example/rewrite "/build/reproducible-path/ciftilib-1.6.0/example/data/ones.dscalar.nii" "big-ones.dscalar.nii" "BIG" -32: Working Directory: /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example -32: Test timeout computed to be: 10000000 -32/35 Test #32: rewrite-big-ones.dscalar.nii ............................................... Passed 0.34 sec -test 34 - Start 34: datatype-ones.dscalar.nii - -34: Test command: /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example/datatype "/build/reproducible-path/ciftilib-1.6.0/example/data/ones.dscalar.nii" "datatype-ones.dscalar.nii" -34: Working Directory: /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example -34: Test timeout computed to be: 10000000 -33/35 Test #34: datatype-ones.dscalar.nii .................................................. Passed 0.38 sec -test 33 - Start 33: rewrite-big-md5-ones.dscalar.nii - -33: Test command: /usr/bin/cmake "-Dgood_sum=2e4efa4e36cdb13f514c265e6c9c8c4b" "-Dcheck_file=big-ones.dscalar.nii" "-P" "/build/reproducible-path/ciftilib-1.6.0/cmake/scripts/testmd5.cmake" -33: Working Directory: /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example -33: Test timeout computed to be: 10000000 -34/35 Test #33: rewrite-big-md5-ones.dscalar.nii ........................................... Passed 0.02 sec -test 35 - Start 35: datatype-md5-ones.dscalar.nii - -35: Test command: /usr/bin/cmake "-Dgood_sum=4dbb23ab2564ba8c9f242a3cb6036600" "-Dcheck_file=datatype-ones.dscalar.nii" "-P" "/build/reproducible-path/ciftilib-1.6.0/cmake/scripts/testmd5.cmake" -35: Working Directory: /build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu/example -35: Test timeout computed to be: 10000000 -35/35 Test #35: datatype-md5-ones.dscalar.nii .............................................. Passed 0.03 sec - -100% tests passed, 0 tests failed out of 35 - -Total Test time (real) = 8.72 sec -make[2]: Leaving directory '/build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu' -make[1]: Leaving directory '/build/reproducible-path/ciftilib-1.6.0' - debian/rules override_dh_auto_test-indep -make[1]: Entering directory '/build/reproducible-path/ciftilib-1.6.0' -echo "Do not run test suite for arch indep builds" -Do not run test suite for arch indep builds -make[1]: Leaving directory '/build/reproducible-path/ciftilib-1.6.0' +dh: command-omitted: The call to "debian/rules override_dh_auto_test-indep" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install-indep @@ -4011,7 +3664,7 @@ DO NOTHING IN dh_auto_install in binary independent package since this only has docs make[1]: Leaving directory '/build/reproducible-path/ciftilib-1.6.0' dh_auto_install -Nlibcifti-doc - cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/ciftilib-1.6.0/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j40 install DESTDIR=/build/reproducible-path/ciftilib-1.6.0/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/ciftilib-1.6.0 -B/build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -4028,40 +3681,40 @@ -- Installing: /build/reproducible-path/ciftilib-1.6.0/debian/tmp/usr/include/CiftiLib/CiftiFile.h -- Installing: /build/reproducible-path/ciftilib-1.6.0/debian/tmp/usr/include/CiftiLib/NiftiIO.h -- Installing: /build/reproducible-path/ciftilib-1.6.0/debian/tmp/usr/include/CiftiLib/Cifti --- Installing: /build/reproducible-path/ciftilib-1.6.0/debian/tmp/usr/include/CiftiLib/Cifti/LabelTable.h -- Installing: /build/reproducible-path/ciftilib-1.6.0/debian/tmp/usr/include/CiftiLib/Cifti/CiftiLabelsMap.h -- Installing: /build/reproducible-path/ciftilib-1.6.0/debian/tmp/usr/include/CiftiLib/Cifti/CiftiVersion.h --- Installing: /build/reproducible-path/ciftilib-1.6.0/debian/tmp/usr/include/CiftiLib/Cifti/VolumeSpace.h --- Installing: /build/reproducible-path/ciftilib-1.6.0/debian/tmp/usr/include/CiftiLib/Cifti/StructureEnum.h +-- Installing: /build/reproducible-path/ciftilib-1.6.0/debian/tmp/usr/include/CiftiLib/Cifti/CiftiBrainModelsMap.h +-- Installing: /build/reproducible-path/ciftilib-1.6.0/debian/tmp/usr/include/CiftiLib/Cifti/CiftiMappingType.h -- Installing: /build/reproducible-path/ciftilib-1.6.0/debian/tmp/usr/include/CiftiLib/Cifti/CiftiParcelsMap.h --- Installing: /build/reproducible-path/ciftilib-1.6.0/debian/tmp/usr/include/CiftiLib/Cifti/CiftiSeriesMap.h -- Installing: /build/reproducible-path/ciftilib-1.6.0/debian/tmp/usr/include/CiftiLib/Cifti/Label.h +-- Installing: /build/reproducible-path/ciftilib-1.6.0/debian/tmp/usr/include/CiftiLib/Cifti/CiftiXML.h -- Installing: /build/reproducible-path/ciftilib-1.6.0/debian/tmp/usr/include/CiftiLib/Cifti/MetaData.h --- Installing: /build/reproducible-path/ciftilib-1.6.0/debian/tmp/usr/include/CiftiLib/Cifti/CiftiMappingType.h --- Installing: /build/reproducible-path/ciftilib-1.6.0/debian/tmp/usr/include/CiftiLib/Cifti/CiftiBrainModelsMap.h -- Installing: /build/reproducible-path/ciftilib-1.6.0/debian/tmp/usr/include/CiftiLib/Cifti/CiftiScalarsMap.h --- Installing: /build/reproducible-path/ciftilib-1.6.0/debian/tmp/usr/include/CiftiLib/Cifti/CiftiXML.h +-- Installing: /build/reproducible-path/ciftilib-1.6.0/debian/tmp/usr/include/CiftiLib/Cifti/StructureEnum.h +-- Installing: /build/reproducible-path/ciftilib-1.6.0/debian/tmp/usr/include/CiftiLib/Cifti/LabelTable.h +-- Installing: /build/reproducible-path/ciftilib-1.6.0/debian/tmp/usr/include/CiftiLib/Cifti/CiftiSeriesMap.h +-- Installing: /build/reproducible-path/ciftilib-1.6.0/debian/tmp/usr/include/CiftiLib/Cifti/VolumeSpace.h -- Installing: /build/reproducible-path/ciftilib-1.6.0/debian/tmp/usr/include/CiftiLib/Common --- Installing: /build/reproducible-path/ciftilib-1.6.0/debian/tmp/usr/include/CiftiLib/Common/ByteSwapping.h --- Installing: /build/reproducible-path/ciftilib-1.6.0/debian/tmp/usr/include/CiftiLib/Common/CompactLookup.h -- Installing: /build/reproducible-path/ciftilib-1.6.0/debian/tmp/usr/include/CiftiLib/Common/Compact3DLookup.h --- Installing: /build/reproducible-path/ciftilib-1.6.0/debian/tmp/usr/include/CiftiLib/Common/CiftiAssert.h +-- Installing: /build/reproducible-path/ciftilib-1.6.0/debian/tmp/usr/include/CiftiLib/Common/Vector3D.h +-- Installing: /build/reproducible-path/ciftilib-1.6.0/debian/tmp/usr/include/CiftiLib/Common/MathFunctions.h +-- Installing: /build/reproducible-path/ciftilib-1.6.0/debian/tmp/usr/include/CiftiLib/Common/BinaryFile.h -- Installing: /build/reproducible-path/ciftilib-1.6.0/debian/tmp/usr/include/CiftiLib/Common/AString.h --- Installing: /build/reproducible-path/ciftilib-1.6.0/debian/tmp/usr/include/CiftiLib/Common/FloatMatrix.h +-- Installing: /build/reproducible-path/ciftilib-1.6.0/debian/tmp/usr/include/CiftiLib/Common/VoxelIJK.h -- Installing: /build/reproducible-path/ciftilib-1.6.0/debian/tmp/usr/include/CiftiLib/Common/CiftiException.h --- Installing: /build/reproducible-path/ciftilib-1.6.0/debian/tmp/usr/include/CiftiLib/Common/BinaryFile.h --- Installing: /build/reproducible-path/ciftilib-1.6.0/debian/tmp/usr/include/CiftiLib/Common/CiftiMutex.h -- Installing: /build/reproducible-path/ciftilib-1.6.0/debian/tmp/usr/include/CiftiLib/Common/MultiDimIterator.h -- Installing: /build/reproducible-path/ciftilib-1.6.0/debian/tmp/usr/include/CiftiLib/Common/XmlAdapter.h --- Installing: /build/reproducible-path/ciftilib-1.6.0/debian/tmp/usr/include/CiftiLib/Common/MultiDimArray.h --- Installing: /build/reproducible-path/ciftilib-1.6.0/debian/tmp/usr/include/CiftiLib/Common/MathFunctions.h --- Installing: /build/reproducible-path/ciftilib-1.6.0/debian/tmp/usr/include/CiftiLib/Common/Vector3D.h --- Installing: /build/reproducible-path/ciftilib-1.6.0/debian/tmp/usr/include/CiftiLib/Common/VoxelIJK.h -- Installing: /build/reproducible-path/ciftilib-1.6.0/debian/tmp/usr/include/CiftiLib/Common/MatrixFunctions.h +-- Installing: /build/reproducible-path/ciftilib-1.6.0/debian/tmp/usr/include/CiftiLib/Common/CompactLookup.h +-- Installing: /build/reproducible-path/ciftilib-1.6.0/debian/tmp/usr/include/CiftiLib/Common/MultiDimArray.h +-- Installing: /build/reproducible-path/ciftilib-1.6.0/debian/tmp/usr/include/CiftiLib/Common/CiftiAssert.h +-- Installing: /build/reproducible-path/ciftilib-1.6.0/debian/tmp/usr/include/CiftiLib/Common/ByteSwapping.h +-- Installing: /build/reproducible-path/ciftilib-1.6.0/debian/tmp/usr/include/CiftiLib/Common/FloatMatrix.h +-- Installing: /build/reproducible-path/ciftilib-1.6.0/debian/tmp/usr/include/CiftiLib/Common/CiftiMutex.h -- Installing: /build/reproducible-path/ciftilib-1.6.0/debian/tmp/usr/include/CiftiLib/Nifti -- Installing: /build/reproducible-path/ciftilib-1.6.0/debian/tmp/usr/include/CiftiLib/Nifti/nifti2.h --- Installing: /build/reproducible-path/ciftilib-1.6.0/debian/tmp/usr/include/CiftiLib/Nifti/nifti1.h -- Installing: /build/reproducible-path/ciftilib-1.6.0/debian/tmp/usr/include/CiftiLib/Nifti/NiftiHeader.h +-- Installing: /build/reproducible-path/ciftilib-1.6.0/debian/tmp/usr/include/CiftiLib/Nifti/nifti1.h make[1]: Leaving directory '/build/reproducible-path/ciftilib-1.6.0/obj-x86_64-linux-gnu' debian/rules override_dh_install-indep make[1]: Entering directory '/build/reproducible-path/ciftilib-1.6.0' @@ -4096,10 +3749,10 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'libcifti-dev' in '../libcifti-dev_1.6.0-5_amd64.deb'. dpkg-deb: building package 'libcifti0t64-dbgsym' in '../libcifti0t64-dbgsym_1.6.0-5_amd64.deb'. -dpkg-deb: building package 'libcifti-doc' in '../libcifti-doc_1.6.0-5_all.deb'. dpkg-deb: building package 'libcifti0t64' in '../libcifti0t64_1.6.0-5_amd64.deb'. +dpkg-deb: building package 'libcifti-dev' in '../libcifti-dev_1.6.0-5_amd64.deb'. +dpkg-deb: building package 'libcifti-doc' in '../libcifti-doc_1.6.0-5_all.deb'. dpkg-genbuildinfo --build=binary -O../ciftilib_1.6.0-5_amd64.buildinfo dpkg-genchanges --build=binary -O../ciftilib_1.6.0-5_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -4107,12 +3760,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3562208/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3562208/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3945803 and its subdirectories -I: Current time: Sun Dec 13 04:28:30 -12 2026 -I: pbuilder-time-stamp: 1797179310 +I: removing directory /srv/workspace/pbuilder/3562208 and its subdirectories +I: Current time: Tue Nov 11 00:07:46 +14 2025 +I: pbuilder-time-stamp: 1762769266