Diff of the two buildlogs: -- --- b1/build.log 2025-11-05 09:23:31.680033624 +0000 +++ b2/build.log 2025-11-05 09:29:50.932469246 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Nov 4 21:20:16 -12 2025 -I: pbuilder-time-stamp: 1762334416 +I: Current time: Wed Dec 9 05:46:32 +14 2026 +I: pbuilder-time-stamp: 1796744792 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -25,53 +25,85 @@ dpkg-source: info: applying 0002-Fix-compilation-error-with-custom-unitig-data.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3540441/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2280169/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 8 15:46 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2280169/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2280169/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 nocheck' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='4d66a0aea84e444ba500e24ee86b4f6f' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3540441' - PS1='# ' - PS2='> ' + INVOCATION_ID=d525e8976191474591a71bf241b8ee18 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2280169 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Z4ITSu19/pbuilderrc_IIze --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Z4ITSu19/b1 --logfile b1/build.log bifrost_1.3.5-2.dsc' - SUDO_GID='111' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Z4ITSu19/pbuilderrc_s2r1 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Z4ITSu19/b2 --logfile b2/build.log bifrost_1.3.5-2.dsc' + SUDO_GID=111 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos11-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3540441/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2280169/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -176,7 +208,7 @@ Get: 61 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.28 [941 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] -Fetched 32.8 MB in 1s (24.7 MB/s) +Fetched 32.8 MB in 14s (2360 kB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19866 files and directories currently installed.) @@ -443,7 +475,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/bifrost-1.3.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../bifrost_1.3.5-2_source.changes +I: user script /srv/workspace/pbuilder/2280169/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/2280169/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/bifrost-1.3.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../bifrost_1.3.5-2_source.changes dpkg-buildpackage: info: source package bifrost dpkg-buildpackage: info: source version 1.3.5-2 dpkg-buildpackage: info: source distribution unstable @@ -460,7 +496,7 @@ debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/bifrost-1.3.5' dh_auto_configure -- -DCOMPILATION_ARCH=OFF -DCMAKE_POLICY_VERSION_MINIMUM=3.5 - cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCOMPILATION_ARCH=OFF -DCMAKE_POLICY_VERSION_MINIMUM=3.5 .. + cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBUILD_TESTING:BOOL=OFF -DCOMPILATION_ARCH=OFF -DCMAKE_POLICY_VERSION_MINIMUM=3.5 .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. @@ -490,11 +526,12 @@ Maximum k-mer size: 31 Maximum g-mer size: 31 -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.3.1") --- Configuring done (1.4s) --- Generating done (0.0s) +-- Configuring done (2.2s) +-- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: + BUILD_TESTING CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR @@ -508,7 +545,7 @@ -- Build files have been written to: /build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/bifrost-1.3.5' dh_auto_build - cd obj-x86_64-linux-gnu && make -j40 INSTALL="install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j42 INSTALL="install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/bifrost-1.3.5 -B/build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu//CMakeFiles/progress.marks @@ -521,67 +558,67 @@ make[3]: Entering directory '/build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu' cd /build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bifrost-1.3.5 /build/reproducible-path/bifrost-1.3.5/src /build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu /build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu/src /build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu/src/CMakeFiles/bifrost_dynamic.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu' make -f src/CMakeFiles/bifrost_static.dir/build.make src/CMakeFiles/bifrost_static.dir/build -make -f src/CMakeFiles/bifrost_dynamic.dir/build.make src/CMakeFiles/bifrost_dynamic.dir/build make[3]: Entering directory '/build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu' +make -f src/CMakeFiles/bifrost_dynamic.dir/build.make src/CMakeFiles/bifrost_dynamic.dir/build make[3]: Entering directory '/build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu' -[ 15%] Building CXX object src/CMakeFiles/bifrost_static.dir/Kmer.cpp.o -[ 12%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/FASTX_Parser.cpp.o -[ 34%] Building CXX object src/CMakeFiles/bifrost_static.dir/BitContainer.cpp.o -[ 46%] Building CXX object src/CMakeFiles/bifrost_static.dir/ColorSet.cpp.o -[ 59%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/CompressedSequence.cpp.o -[ 75%] Building CXX object src/CMakeFiles/bifrost_static.dir/TinyBitmap.cpp.o -[ 84%] Building CXX object src/CMakeFiles/bifrost_static.dir/UnitigMap.cpp.o -[ 84%] Building C object src/CMakeFiles/bifrost_dynamic.dir/roaring.c.o -[ 18%] Building CXX object src/CMakeFiles/bifrost_static.dir/CompressedCoverage.cpp.o -[ 87%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/CompressedCoverage.cpp.o -[ 87%] Building CXX object src/CMakeFiles/bifrost_static.dir/GFA_Parser.cpp.o -[ 28%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/BitContainer.cpp.o -[ 6%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/Bifrost.cpp.o -[ 87%] Building CXX object src/CMakeFiles/bifrost_static.dir/KmerIterator.cpp.o -[ 53%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/Kmer.cpp.o +[ 9%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/FASTX_Parser.cpp.o +[ 9%] Building CXX object src/CMakeFiles/bifrost_static.dir/GFA_Parser.cpp.o +[ 9%] Building CXX object src/CMakeFiles/bifrost_static.dir/CompressedCoverage.cpp.o +[ 12%] Building CXX object src/CMakeFiles/bifrost_static.dir/ColorSet.cpp.o +[ 15%] Building CXX object src/CMakeFiles/bifrost_static.dir/UnitigMap.cpp.o +[ 25%] Building CXX object src/CMakeFiles/bifrost_static.dir/KmerIterator.cpp.o +[ 25%] Building CXX object src/CMakeFiles/bifrost_static.dir/FASTX_Parser.cpp.o +[ 28%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/CompressedSequence.cpp.o +[ 31%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/CompressedCoverage.cpp.o +[ 34%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/BitContainer.cpp.o +[ 37%] Building CXX object src/CMakeFiles/bifrost_static.dir/Bifrost.cpp.o +[ 40%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/Bifrost.cpp.o +[ 43%] Building CXX object src/CMakeFiles/bifrost_static.dir/CompressedSequence.cpp.o +[ 46%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/ColorSet.cpp.o +[ 56%] Building CXX object src/CMakeFiles/bifrost_static.dir/Kmer.cpp.o [ 56%] Building CXX object src/CMakeFiles/bifrost_static.dir/MinimizerIndex.cpp.o -[ 87%] Building CXX object src/CMakeFiles/bifrost_static.dir/Bifrost.cpp.o -[ 87%] Building C object src/CMakeFiles/bifrost_static.dir/roaring.c.o -[ 87%] Building CXX object src/CMakeFiles/bifrost_static.dir/FASTX_Parser.cpp.o -[ 87%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/MinimizerIndex.cpp.o -[ 40%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/BlockedBloomFilter.cpp.o -[ 87%] Building CXX object src/CMakeFiles/bifrost_static.dir/BlockedBloomFilter.cpp.o -[ 87%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/ColorSet.cpp.o -[ 87%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/KmerIterator.cpp.o -cd /build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/Kmer.cpp.o -MF CMakeFiles/bifrost_static.dir/Kmer.cpp.o.d -o CMakeFiles/bifrost_static.dir/Kmer.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/Kmer.cpp -[ 87%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/TinyBitmap.cpp.o -[ 87%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/UnitigMap.cpp.o -[ 87%] Building CXX object src/CMakeFiles/bifrost_static.dir/CompressedSequence.cpp.o -cd /build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/BitContainer.cpp.o -MF CMakeFiles/bifrost_static.dir/BitContainer.cpp.o.d -o CMakeFiles/bifrost_static.dir/BitContainer.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/BitContainer.cpp -[ 62%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/GFA_Parser.cpp.o -cd /build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/ColorSet.cpp.o -MF CMakeFiles/bifrost_static.dir/ColorSet.cpp.o.d -o CMakeFiles/bifrost_static.dir/ColorSet.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/ColorSet.cpp -cd /build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/CompressedSequence.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/CompressedSequence.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/CompressedSequence.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/CompressedSequence.cpp -cd /build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/CompressedSequence.cpp.o -MF CMakeFiles/bifrost_static.dir/CompressedSequence.cpp.o.d -o CMakeFiles/bifrost_static.dir/CompressedSequence.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/CompressedSequence.cpp -cd /build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/Bifrost.cpp.o -MF CMakeFiles/bifrost_static.dir/Bifrost.cpp.o.d -o CMakeFiles/bifrost_static.dir/Bifrost.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/Bifrost.cpp -cd /build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/BlockedBloomFilter.cpp.o -MF CMakeFiles/bifrost_static.dir/BlockedBloomFilter.cpp.o.d -o CMakeFiles/bifrost_static.dir/BlockedBloomFilter.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/BlockedBloomFilter.cpp +[ 56%] Building CXX object src/CMakeFiles/bifrost_static.dir/BitContainer.cpp.o +[ 56%] Building CXX object src/CMakeFiles/bifrost_static.dir/BlockedBloomFilter.cpp.o cd /build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/Bifrost.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/Bifrost.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/Bifrost.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/Bifrost.cpp +cd /build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/BitContainer.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/BitContainer.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/BitContainer.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/BitContainer.cpp +cd /build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/ColorSet.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/ColorSet.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/ColorSet.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/ColorSet.cpp +[ 59%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/GFA_Parser.cpp.o cd /build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/CompressedCoverage.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/CompressedCoverage.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/CompressedCoverage.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/CompressedCoverage.cpp +cd /build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/CompressedSequence.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/CompressedSequence.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/CompressedSequence.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/CompressedSequence.cpp +cd /build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/FASTX_Parser.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/FASTX_Parser.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/FASTX_Parser.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/FASTX_Parser.cpp +cd /build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/GFA_Parser.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/GFA_Parser.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/GFA_Parser.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/GFA_Parser.cpp +[ 62%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/BlockedBloomFilter.cpp.o +cd /build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/BlockedBloomFilter.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/BlockedBloomFilter.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/BlockedBloomFilter.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/BlockedBloomFilter.cpp +[ 65%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/KmerIterator.cpp.o +cd /build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/KmerIterator.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/KmerIterator.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/KmerIterator.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/KmerIterator.cpp +[ 68%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/UnitigMap.cpp.o +cd /build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/UnitigMap.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/UnitigMap.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/UnitigMap.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/UnitigMap.cpp +[ 71%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/Kmer.cpp.o cd /build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/Kmer.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/Kmer.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/Kmer.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/Kmer.cpp -cd /build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/ColorSet.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/ColorSet.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/ColorSet.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/ColorSet.cpp +[ 75%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/MinimizerIndex.cpp.o +[ 78%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/TinyBitmap.cpp.o +cd /build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/TinyBitmap.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/TinyBitmap.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/TinyBitmap.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/TinyBitmap.cpp +cd /build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/MinimizerIndex.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/MinimizerIndex.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/MinimizerIndex.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/MinimizerIndex.cpp +[ 81%] Building C object src/CMakeFiles/bifrost_dynamic.dir/roaring.c.o +cd /build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu/src && /usr/bin/cc -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/roaring.c.o -MF CMakeFiles/bifrost_dynamic.dir/roaring.c.o.d -o CMakeFiles/bifrost_dynamic.dir/roaring.c.o -c /build/reproducible-path/bifrost-1.3.5/src/roaring.c +[ 84%] Building C object src/CMakeFiles/bifrost_static.dir/roaring.c.o +[ 87%] Building CXX object src/CMakeFiles/bifrost_static.dir/TinyBitmap.cpp.o +cd /build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/Bifrost.cpp.o -MF CMakeFiles/bifrost_static.dir/Bifrost.cpp.o.d -o CMakeFiles/bifrost_static.dir/Bifrost.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/Bifrost.cpp +cd /build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/BitContainer.cpp.o -MF CMakeFiles/bifrost_static.dir/BitContainer.cpp.o.d -o CMakeFiles/bifrost_static.dir/BitContainer.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/BitContainer.cpp +cd /build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/BlockedBloomFilter.cpp.o -MF CMakeFiles/bifrost_static.dir/BlockedBloomFilter.cpp.o.d -o CMakeFiles/bifrost_static.dir/BlockedBloomFilter.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/BlockedBloomFilter.cpp +cd /build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/ColorSet.cpp.o -MF CMakeFiles/bifrost_static.dir/ColorSet.cpp.o.d -o CMakeFiles/bifrost_static.dir/ColorSet.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/ColorSet.cpp +cd /build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/CompressedCoverage.cpp.o -MF CMakeFiles/bifrost_static.dir/CompressedCoverage.cpp.o.d -o CMakeFiles/bifrost_static.dir/CompressedCoverage.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/CompressedCoverage.cpp +cd /build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/CompressedSequence.cpp.o -MF CMakeFiles/bifrost_static.dir/CompressedSequence.cpp.o.d -o CMakeFiles/bifrost_static.dir/CompressedSequence.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/CompressedSequence.cpp cd /build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/FASTX_Parser.cpp.o -MF CMakeFiles/bifrost_static.dir/FASTX_Parser.cpp.o.d -o CMakeFiles/bifrost_static.dir/FASTX_Parser.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/FASTX_Parser.cpp cd /build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/GFA_Parser.cpp.o -MF CMakeFiles/bifrost_static.dir/GFA_Parser.cpp.o.d -o CMakeFiles/bifrost_static.dir/GFA_Parser.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/GFA_Parser.cpp +cd /build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/Kmer.cpp.o -MF CMakeFiles/bifrost_static.dir/Kmer.cpp.o.d -o CMakeFiles/bifrost_static.dir/Kmer.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/Kmer.cpp cd /build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/KmerIterator.cpp.o -MF CMakeFiles/bifrost_static.dir/KmerIterator.cpp.o.d -o CMakeFiles/bifrost_static.dir/KmerIterator.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/KmerIterator.cpp -cd /build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/BlockedBloomFilter.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/BlockedBloomFilter.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/BlockedBloomFilter.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/BlockedBloomFilter.cpp -cd /build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/CompressedCoverage.cpp.o -MF CMakeFiles/bifrost_static.dir/CompressedCoverage.cpp.o.d -o CMakeFiles/bifrost_static.dir/CompressedCoverage.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/CompressedCoverage.cpp -cd /build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/BitContainer.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/BitContainer.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/BitContainer.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/BitContainer.cpp cd /build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/MinimizerIndex.cpp.o -MF CMakeFiles/bifrost_static.dir/MinimizerIndex.cpp.o.d -o CMakeFiles/bifrost_static.dir/MinimizerIndex.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/MinimizerIndex.cpp -cd /build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/FASTX_Parser.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/FASTX_Parser.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/FASTX_Parser.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/FASTX_Parser.cpp cd /build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/TinyBitmap.cpp.o -MF CMakeFiles/bifrost_static.dir/TinyBitmap.cpp.o.d -o CMakeFiles/bifrost_static.dir/TinyBitmap.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/TinyBitmap.cpp -cd /build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/GFA_Parser.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/GFA_Parser.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/GFA_Parser.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/GFA_Parser.cpp cd /build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/UnitigMap.cpp.o -MF CMakeFiles/bifrost_static.dir/UnitigMap.cpp.o.d -o CMakeFiles/bifrost_static.dir/UnitigMap.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/UnitigMap.cpp cd /build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu/src && /usr/bin/cc -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/roaring.c.o -MF CMakeFiles/bifrost_static.dir/roaring.c.o.d -o CMakeFiles/bifrost_static.dir/roaring.c.o -c /build/reproducible-path/bifrost-1.3.5/src/roaring.c -cd /build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/KmerIterator.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/KmerIterator.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/KmerIterator.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/KmerIterator.cpp -cd /build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/MinimizerIndex.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/MinimizerIndex.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/MinimizerIndex.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/MinimizerIndex.cpp -cd /build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/TinyBitmap.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/TinyBitmap.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/TinyBitmap.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/TinyBitmap.cpp -cd /build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/UnitigMap.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/UnitigMap.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/UnitigMap.cpp.o -c /build/reproducible-path/bifrost-1.3.5/src/UnitigMap.cpp -cd /build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu/src && /usr/bin/cc -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.5/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/roaring.c.o -MF CMakeFiles/bifrost_dynamic.dir/roaring.c.o.d -o CMakeFiles/bifrost_dynamic.dir/roaring.c.o -c /build/reproducible-path/bifrost-1.3.5/src/roaring.c [ 90%] Linking CXX shared library libbifrost.so cd /build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bifrost_dynamic.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,--dependency-file=CMakeFiles/bifrost_dynamic.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libbifrost.so.0 -o libbifrost.so.0 CMakeFiles/bifrost_dynamic.dir/Bifrost.cpp.o CMakeFiles/bifrost_dynamic.dir/BitContainer.cpp.o CMakeFiles/bifrost_dynamic.dir/BlockedBloomFilter.cpp.o CMakeFiles/bifrost_dynamic.dir/ColorSet.cpp.o CMakeFiles/bifrost_dynamic.dir/CompressedCoverage.cpp.o CMakeFiles/bifrost_dynamic.dir/CompressedSequence.cpp.o CMakeFiles/bifrost_dynamic.dir/FASTX_Parser.cpp.o CMakeFiles/bifrost_dynamic.dir/GFA_Parser.cpp.o CMakeFiles/bifrost_dynamic.dir/Kmer.cpp.o CMakeFiles/bifrost_dynamic.dir/KmerIterator.cpp.o CMakeFiles/bifrost_dynamic.dir/MinimizerIndex.cpp.o CMakeFiles/bifrost_dynamic.dir/TinyBitmap.cpp.o CMakeFiles/bifrost_dynamic.dir/UnitigMap.cpp.o CMakeFiles/bifrost_dynamic.dir/roaring.c.o -lz @@ -611,11 +648,11 @@ make[2]: Leaving directory '/build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu' - dh_auto_test +dh: command-omitted: The call to "dh_auto_test" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install - cd obj-x86_64-linux-gnu && make -j40 install DESTDIR=/build/reproducible-path/bifrost-1.3.5/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/bifrost-1.3.5/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/bifrost-1.3.5 -B/build/reproducible-path/bifrost-1.3.5/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -735,12 +772,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2280169/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2280169/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3540441 and its subdirectories -I: Current time: Tue Nov 4 21:23:31 -12 2025 -I: pbuilder-time-stamp: 1762334611 +I: removing directory /srv/workspace/pbuilder/2280169 and its subdirectories +I: Current time: Wed Dec 9 05:52:50 +14 2026 +I: pbuilder-time-stamp: 1796745170