Diff of the two buildlogs: -- --- b1/build.log 2025-11-04 16:51:28.610628196 +0000 +++ b2/build.log 2025-11-04 16:52:20.302676638 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Dec 7 11:12:32 -12 2026 -I: pbuilder-time-stamp: 1796685152 +I: Current time: Wed Nov 5 06:51:30 +14 2025 +I: pbuilder-time-stamp: 1762275090 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -28,52 +28,84 @@ dpkg-source: info: applying cmake-4.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3656775/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3228862/tmp/hooks/D01_modify_environment starting +debug: Running on infom01-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Nov 4 16:51 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3228862/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3228862/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 nocheck' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='dc8ee1eac44f45369416f613c0951685' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3656775' - PS1='# ' - PS2='> ' + INVOCATION_ID=50c9bfdec28b4461a2b2e03e95ba3630 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3228862 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.qzTePhUP/pbuilderrc_02bd --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.qzTePhUP/b1 --logfile b1/build.log assembly-stats_1.0.1+ds-7.dsc' - SUDO_GID='109' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.qzTePhUP/pbuilderrc_XTk1 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.qzTePhUP/b2 --logfile b2/build.log assembly-stats_1.0.1+ds-7.dsc' + SUDO_GID=109 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' I: uname -a - Linux infom02-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3656775/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3228862/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -176,7 +208,7 @@ Get: 61 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.28 [941 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 googletest all 1.17.0-1 [522 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libgtest-dev amd64 1.17.0-1 [259 kB] -Fetched 32.6 MB in 1s (51.3 MB/s) +Fetched 32.6 MB in 0s (68.0 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19866 files and directories currently installed.) @@ -449,7 +481,11 @@ Solving dependencies... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/reproducible-path/assembly-stats-1.0.1+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../assembly-stats_1.0.1+ds-7_source.changes +I: user script /srv/workspace/pbuilder/3228862/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/3228862/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/assembly-stats-1.0.1+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../assembly-stats_1.0.1+ds-7_source.changes dpkg-buildpackage: info: source package assembly-stats dpkg-buildpackage: info: source version 1.0.1+ds-7 dpkg-buildpackage: info: source distribution unstable @@ -465,8 +501,8 @@ dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/assembly-stats-1.0.1+ds' -dh_auto_configure -- -DBUILD_TESTS=ON - cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBUILD_TESTS=ON .. +dh_auto_configure -- -DBUILD_TESTS=OFF + cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBUILD_TESTING:BOOL=OFF -DBUILD_TESTS=OFF .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. @@ -488,11 +524,12 @@ -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done --- Configuring done (2.2s) +-- Configuring done (0.4s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: + BUILD_TESTING CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_FIND_USE_PACKAGE_REGISTRY @@ -506,36 +543,36 @@ -- Build files have been written to: /build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/assembly-stats-1.0.1+ds' dh_auto_build - cd obj-x86_64-linux-gnu && make -j16 INSTALL="install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j12 INSTALL="install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/assembly-stats-1.0.1+ds -B/build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu' -make -f CMakeFiles/filetype.dir/build.make CMakeFiles/filetype.dir/depend make -f CMakeFiles/fasta.dir/build.make CMakeFiles/fasta.dir/depend make -f CMakeFiles/fastq.dir/build.make CMakeFiles/fastq.dir/depend +make -f CMakeFiles/filetype.dir/build.make CMakeFiles/filetype.dir/depend +make[3]: Entering directory '/build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu' +cd /build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/assembly-stats-1.0.1+ds /build/reproducible-path/assembly-stats-1.0.1+ds /build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu/CMakeFiles/fasta.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/assembly-stats-1.0.1+ds /build/reproducible-path/assembly-stats-1.0.1+ds /build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu 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'/build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu' -make -f CMakeFiles/filetype.dir/build.make CMakeFiles/filetype.dir/build make[3]: Entering directory '/build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu' -[ 6%] Building CXX object CMakeFiles/fasta.dir/fasta.cpp.o -[ 13%] Building CXX object CMakeFiles/fastq.dir/fastq.cpp.o -[ 20%] Building CXX object CMakeFiles/filetype.dir/filetype.cpp.o -/usr/bin/c++ -I/usr/include/gtest -Wall -g -O3 -pthread -MD -MT CMakeFiles/fasta.dir/fasta.cpp.o -MF CMakeFiles/fasta.dir/fasta.cpp.o.d -o CMakeFiles/fasta.dir/fasta.cpp.o -c /build/reproducible-path/assembly-stats-1.0.1+ds/fasta.cpp -/usr/bin/c++ -I/usr/include/gtest -Wall -g -O3 -pthread -MD -MT CMakeFiles/fastq.dir/fastq.cpp.o -MF CMakeFiles/fastq.dir/fastq.cpp.o.d -o CMakeFiles/fastq.dir/fastq.cpp.o -c 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CMakeFiles/fasta.dir/fasta.cpp.o -MF CMakeFiles/fasta.dir/fasta.cpp.o.d -o CMakeFiles/fasta.dir/fasta.cpp.o -c /build/reproducible-path/assembly-stats-1.0.1+ds/fasta.cpp In file included from /build/reproducible-path/assembly-stats-1.0.1+ds/fastq.h:7, from /build/reproducible-path/assembly-stats-1.0.1+ds/fastq.cpp:1: /build/reproducible-path/assembly-stats-1.0.1+ds/fasta.h:40:18: warning: ‘virtual void Fasta::toString(std::ostream&, unsigned int) const’ was hidden [-Woverloaded-virtual=] @@ -544,35 +581,35 @@ /build/reproducible-path/assembly-stats-1.0.1+ds/fastq.h:23:18: note: by ‘virtual void Fastq::toString(std::ostream&) const’ 23 | virtual void toString(ostream & outStream) const; | ^~~~~~~~ -[ 26%] Linking CXX static library libfiletype.a +[ 40%] Linking CXX static library libfiletype.a /usr/bin/cmake -P CMakeFiles/filetype.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/filetype.dir/link.txt --verbose=1 /usr/bin/ar qc libfiletype.a 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CMakeFiles/fasta.dir/cmake_clean_target.cmake +/usr/bin/cmake -E cmake_link_script CMakeFiles/fasta.dir/link.txt --verbose=1 /usr/bin/ar qc libfasta.a CMakeFiles/fasta.dir/fasta.cpp.o /usr/bin/ranlib libfasta.a make[3]: Leaving directory '/build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu' -[ 40%] Built target fasta +[ 60%] Built target fasta make -f CMakeFiles/stats.dir/build.make CMakeFiles/stats.dir/depend make[3]: Entering directory '/build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/assembly-stats-1.0.1+ds /build/reproducible-path/assembly-stats-1.0.1+ds /build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu 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/build/reproducible-path/assembly-stats-1.0.1+ds/stats.h:8, from /build/reproducible-path/assembly-stats-1.0.1+ds/stats.cpp:1: /build/reproducible-path/assembly-stats-1.0.1+ds/fasta.h:40:18: warning: ‘virtual void Fasta::toString(std::ostream&, unsigned int) const’ was hidden [-Woverloaded-virtual=] @@ -582,35 +619,21 @@ /build/reproducible-path/assembly-stats-1.0.1+ds/fastq.h:23:18: note: by ‘virtual void Fastq::toString(std::ostream&) const’ 23 | virtual void toString(ostream & outStream) const; | ^~~~~~~~ -[ 53%] Linking CXX static library libstats.a +[ 80%] Linking CXX static library libstats.a /usr/bin/cmake -P CMakeFiles/stats.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/stats.dir/link.txt --verbose=1 /usr/bin/ar qc libstats.a CMakeFiles/stats.dir/stats.cpp.o /usr/bin/ranlib libstats.a make[3]: Leaving directory '/build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu' -[ 53%] Built target stats -make -f CMakeFiles/runUnitTests.dir/build.make CMakeFiles/runUnitTests.dir/depend +[ 80%] Built target stats make -f CMakeFiles/assembly-stats.dir/build.make CMakeFiles/assembly-stats.dir/depend make[3]: Entering directory '/build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu' -cd /build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/assembly-stats-1.0.1+ds /build/reproducible-path/assembly-stats-1.0.1+ds /build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu/CMakeFiles/runUnitTests.dir/DependInfo.cmake "--color=" -make[3]: Entering directory '/build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/assembly-stats-1.0.1+ds /build/reproducible-path/assembly-stats-1.0.1+ds /build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu/CMakeFiles/assembly-stats.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu' make -f CMakeFiles/assembly-stats.dir/build.make CMakeFiles/assembly-stats.dir/build -make[3]: Leaving directory '/build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu' -make -f CMakeFiles/runUnitTests.dir/build.make CMakeFiles/runUnitTests.dir/build -make[3]: Entering directory '/build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu' -[ 60%] Building CXX object CMakeFiles/assembly-stats.dir/assembly-stats.cpp.o -[ 66%] Building CXX object CMakeFiles/runUnitTests.dir/fastq_unittest.cpp.o -[ 73%] Building CXX object CMakeFiles/runUnitTests.dir/filetype_unittest.cpp.o -[ 80%] Building CXX object CMakeFiles/runUnitTests.dir/fasta_unittest.cpp.o -/usr/bin/c++ -I/usr/include/gtest -Wall -g -O3 -pthread -MD -MT CMakeFiles/assembly-stats.dir/assembly-stats.cpp.o -MF CMakeFiles/assembly-stats.dir/assembly-stats.cpp.o.d -o CMakeFiles/assembly-stats.dir/assembly-stats.cpp.o -c /build/reproducible-path/assembly-stats-1.0.1+ds/assembly-stats.cpp -/usr/bin/c++ -I/usr/include/gtest -Wall -g -O3 -pthread -MD -MT CMakeFiles/runUnitTests.dir/fastq_unittest.cpp.o -MF CMakeFiles/runUnitTests.dir/fastq_unittest.cpp.o.d -o CMakeFiles/runUnitTests.dir/fastq_unittest.cpp.o -c /build/reproducible-path/assembly-stats-1.0.1+ds/fastq_unittest.cpp -/usr/bin/c++ -I/usr/include/gtest -Wall -g -O3 -pthread -MD -MT CMakeFiles/runUnitTests.dir/filetype_unittest.cpp.o -MF CMakeFiles/runUnitTests.dir/filetype_unittest.cpp.o.d -o CMakeFiles/runUnitTests.dir/filetype_unittest.cpp.o -c /build/reproducible-path/assembly-stats-1.0.1+ds/filetype_unittest.cpp -[ 86%] Building CXX object CMakeFiles/runUnitTests.dir/stats_unittest.cpp.o -/usr/bin/c++ -I/usr/include/gtest -Wall -g -O3 -pthread -MD -MT CMakeFiles/runUnitTests.dir/fasta_unittest.cpp.o -MF CMakeFiles/runUnitTests.dir/fasta_unittest.cpp.o.d -o CMakeFiles/runUnitTests.dir/fasta_unittest.cpp.o -c /build/reproducible-path/assembly-stats-1.0.1+ds/fasta_unittest.cpp -/usr/bin/c++ -I/usr/include/gtest -Wall -g -O3 -pthread -MD -MT CMakeFiles/runUnitTests.dir/stats_unittest.cpp.o -MF CMakeFiles/runUnitTests.dir/stats_unittest.cpp.o.d -o CMakeFiles/runUnitTests.dir/stats_unittest.cpp.o -c /build/reproducible-path/assembly-stats-1.0.1+ds/stats_unittest.cpp +[ 90%] Building CXX object CMakeFiles/assembly-stats.dir/assembly-stats.cpp.o +/usr/bin/c++ -Wall -g -O3 -pthread -MD -MT CMakeFiles/assembly-stats.dir/assembly-stats.cpp.o -MF CMakeFiles/assembly-stats.dir/assembly-stats.cpp.o.d -o CMakeFiles/assembly-stats.dir/assembly-stats.cpp.o -c /build/reproducible-path/assembly-stats-1.0.1+ds/assembly-stats.cpp In file included from /build/reproducible-path/assembly-stats-1.0.1+ds/assembly-stats.cpp:7: /build/reproducible-path/assembly-stats-1.0.1+ds/fasta.h:40:18: warning: ‘virtual void Fasta::toString(std::ostream&, unsigned int) const’ was hidden [-Woverloaded-virtual=] 40 | virtual void toString(ostream& outStream, unsigned int lineWidth=60) const; @@ -619,117 +642,15 @@ /build/reproducible-path/assembly-stats-1.0.1+ds/fastq.h:23:18: note: by ‘virtual void Fastq::toString(std::ostream&) const’ 23 | virtual void toString(ostream & outStream) const; | ^~~~~~~~ -In file included from /build/reproducible-path/assembly-stats-1.0.1+ds/fastq.h:7, - from /build/reproducible-path/assembly-stats-1.0.1+ds/fastq_unittest.cpp:4: -/build/reproducible-path/assembly-stats-1.0.1+ds/fasta.h:40:18: warning: ‘virtual void Fasta::toString(std::ostream&, unsigned int) const’ was hidden [-Woverloaded-virtual=] - 40 | virtual void toString(ostream& outStream, unsigned int lineWidth=60) const; - | ^~~~~~~~ -/build/reproducible-path/assembly-stats-1.0.1+ds/fastq.h:23:18: note: by ‘virtual void Fastq::toString(std::ostream&) const’ - 23 | virtual void toString(ostream & outStream) const; - | ^~~~~~~~ -[ 93%] Linking CXX executable assembly-stats +[100%] Linking CXX executable assembly-stats /usr/bin/cmake -E cmake_link_script CMakeFiles/assembly-stats.dir/link.txt --verbose=1 -In file included from /build/reproducible-path/assembly-stats-1.0.1+ds/stats.h:8, - from /build/reproducible-path/assembly-stats-1.0.1+ds/stats_unittest.cpp:1: -/build/reproducible-path/assembly-stats-1.0.1+ds/fasta.h:40:18: warning: ‘virtual void Fasta::toString(std::ostream&, unsigned int) const’ was hidden [-Woverloaded-virtual=] - 40 | virtual void toString(ostream& outStream, unsigned int lineWidth=60) const; - | ^~~~~~~~ -In file included from /build/reproducible-path/assembly-stats-1.0.1+ds/stats.h:9: -/build/reproducible-path/assembly-stats-1.0.1+ds/fastq.h:23:18: note: by ‘virtual void Fastq::toString(std::ostream&) const’ - 23 | virtual void toString(ostream & outStream) const; - | ^~~~~~~~ /usr/bin/c++ -Wall -g -O3 -pthread -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/assembly-stats.dir/link.d "CMakeFiles/assembly-stats.dir/assembly-stats.cpp.o" -o assembly-stats libstats.a libfasta.a libfastq.a libfiletype.a make[3]: Leaving directory '/build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu' -[ 93%] Built target assembly-stats -[100%] Linking CXX executable runUnitTests -/usr/bin/cmake -E cmake_link_script CMakeFiles/runUnitTests.dir/link.txt --verbose=1 -/usr/bin/c++ -Wall -g -O3 -pthread -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/runUnitTests.dir/link.d CMakeFiles/runUnitTests.dir/fasta_unittest.cpp.o CMakeFiles/runUnitTests.dir/fastq_unittest.cpp.o CMakeFiles/runUnitTests.dir/filetype_unittest.cpp.o CMakeFiles/runUnitTests.dir/stats_unittest.cpp.o -o runUnitTests -lgtest -lgtest_main libfasta.a libfastq.a libfiletype.a libstats.a libfasta.a libfastq.a libfiletype.a -make[3]: Leaving directory '/build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu' -[100%] Built target runUnitTests +[100%] Built target assembly-stats make[2]: Leaving directory '/build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu' - dh_auto_test - cd obj-x86_64-linux-gnu && make -j16 test ARGS\+=--verbose ARGS\+=-j16 -make[1]: Entering directory '/build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu' -Running tests... -/usr/bin/ctest --force-new-ctest-process --verbose -j16 -UpdateCTestConfiguration from :/build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu/DartConfiguration.tcl -UpdateCTestConfiguration from :/build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu/DartConfiguration.tcl -Test project /build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu -Constructing a list of tests -Done constructing a list of tests -Updating test list for fixtures -Added 0 tests to meet fixture requirements -Checking test dependency graph... -Checking test dependency graph end -Connected to MAKE jobserver -test 1 - Start 1: runUnitTests - -1: Test command: /build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu/runUnitTests -1: Working Directory: /build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu -1: Test timeout computed to be: 10000000 -1: Running main() from ./googletest/src/gtest_main.cc -1: [==========] Running 18 tests from 4 test suites. -1: [----------] Global test environment set-up. -1: [----------] 7 tests from Fasta -1: [ RUN ] Fasta.DefaultConstructor -1: [ OK ] Fasta.DefaultConstructor (0 ms) -1: [ RUN ] Fasta.ConstructorWithValues -1: [ OK ] Fasta.ConstructorWithValues (0 ms) -1: [ RUN ] Fasta.setValues -1: [ OK ] Fasta.setValues (0 ms) -1: [ RUN ] Fasta.LengthOfSequence -1: [ OK ] Fasta.LengthOfSequence (0 ms) -1: [ RUN ] Fasta.N_count -1: [ OK ] Fasta.N_count (0 ms) -1: [ RUN ] Fasta.Gaps -1: [ OK ] Fasta.Gaps (0 ms) -1: [ RUN ] Fasta.ReadFromFile -1: [ OK ] Fasta.ReadFromFile (0 ms) -1: [----------] 7 tests from Fasta (0 ms total) -1: -1: [----------] 4 tests from Fastq -1: [ RUN ] Fastq.DefaultConstructor -1: [ OK ] Fastq.DefaultConstructor (0 ms) -1: [ RUN ] Fastq.ConstructorWithValues -1: [ OK ] Fastq.ConstructorWithValues (0 ms) -1: [ RUN ] Fastq.setValues -1: [ OK ] Fastq.setValues (0 ms) -1: [ RUN ] Fastq.ReadFromFile -1: [ OK ] Fastq.ReadFromFile (0 ms) -1: [----------] 4 tests from Fastq (0 ms total) -1: -1: [----------] 3 tests from filetype -1: [ RUN ] filetype.FastaType -1: [ OK ] filetype.FastaType (0 ms) -1: [ RUN ] filetype.FastqType -1: [ OK ] filetype.FastqType (0 ms) -1: [ RUN ] filetype.UnknownType -1: [ OK ] filetype.UnknownType (0 ms) -1: [----------] 3 tests from filetype (0 ms total) -1: -1: [----------] 4 tests from Stats -1: [ RUN ] Stats.HumanReadable -1: [ OK ] Stats.HumanReadable (0 ms) -1: [ RUN ] Stats.Greppy -1: [ OK ] Stats.Greppy (0 ms) -1: [ RUN ] Stats.TabDelimited -1: [ OK ] Stats.TabDelimited (0 ms) -1: [ RUN ] Stats.TabDelimitedNoHeader -1: [ OK ] Stats.TabDelimitedNoHeader (0 ms) -1: [----------] 4 tests from Stats (0 ms total) -1: -1: [----------] Global test environment tear-down -1: [==========] 18 tests from 4 test suites ran. (0 ms total) -1: [ PASSED ] 18 tests. -1/1 Test #1: runUnitTests ..................... Passed 0.00 sec - -100% tests passed, 0 tests failed out of 1 - -Total Test time (real) = 0.00 sec -make[1]: Leaving directory '/build/reproducible-path/assembly-stats-1.0.1+ds/obj-x86_64-linux-gnu' +dh: command-omitted: The call to "dh_auto_test" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install @@ -754,8 +675,8 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'assembly-stats' in '../assembly-stats_1.0.1+ds-7_amd64.deb'. dpkg-deb: building package 'assembly-stats-dbgsym' in '../assembly-stats-dbgsym_1.0.1+ds-7_amd64.deb'. +dpkg-deb: building package 'assembly-stats' in '../assembly-stats_1.0.1+ds-7_amd64.deb'. dpkg-genbuildinfo --build=binary -O../assembly-stats_1.0.1+ds-7_amd64.buildinfo dpkg-genchanges --build=binary -O../assembly-stats_1.0.1+ds-7_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -763,12 +684,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3228862/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3228862/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3656775 and its subdirectories -I: Current time: Mon Dec 7 11:14:28 -12 2026 -I: pbuilder-time-stamp: 1796685268 +I: removing directory /srv/workspace/pbuilder/3228862 and its subdirectories +I: Current time: Wed Nov 5 06:52:19 +14 2025 +I: pbuilder-time-stamp: 1762275139