Diff of the two buildlogs: -- --- b1/build.log 2025-02-06 13:51:27.513972972 +0000 +++ b2/build.log 2025-02-06 14:04:56.609359585 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Mar 11 08:10:42 -12 2026 -I: pbuilder-time-stamp: 1773259842 +I: Current time: Fri Feb 7 03:51:37 +14 2025 +I: pbuilder-time-stamp: 1738849897 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -28,54 +28,86 @@ dpkg-source: info: applying repair.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/31039/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/35206/tmp/hooks/D01_modify_environment starting +debug: Running on ionos2-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Feb 6 13:52 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/35206/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/35206/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=10 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='63d5367c289741ca9336c380231eb438' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='31039' - PS1='# ' - PS2='> ' + INVOCATION_ID=23c88e8112bd425496ddc49b7f399fd1 + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=35206 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.bFWZQaEk/pbuilderrc_TkaX --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.bFWZQaEk/b1 --logfile b1/build.log tnseq-transit_3.3.12-1.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.bFWZQaEk/pbuilderrc_1kfm --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.bFWZQaEk/b2 --logfile b2/build.log tnseq-transit_3.3.12-1.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos16-i386 6.1.0-30-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.124-1 (2025-01-12) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-30-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.124-1 (2025-01-12) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/31039/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/35206/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -289,7 +321,7 @@ Get: 154 http://deb.debian.org/debian trixie/main i386 python3-sklearn all 1.4.2+dfsg-7 [2248 kB] Get: 155 http://deb.debian.org/debian trixie/main i386 python3-statsmodels-lib i386 0.14.4+dfsg-1+b2 [2191 kB] Get: 156 http://deb.debian.org/debian trixie/main i386 python3-statsmodels all 0.14.4+dfsg-1 [4825 kB] -Fetched 133 MB in 1s (89.0 MB/s) +Fetched 133 MB in 2s (62.9 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19829 files and directories currently installed.) @@ -803,8 +835,8 @@ Setting up tzdata (2024b-6) ... Current default time zone: 'Etc/UTC' -Local time is now: Wed Mar 11 20:11:13 UTC 2026. -Universal Time is now: Wed Mar 11 20:11:13 UTC 2026. +Local time is now: Thu Feb 6 13:53:01 UTC 2025. +Universal Time is now: Thu Feb 6 13:53:01 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... @@ -945,7 +977,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/tnseq-transit-3.3.12/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../tnseq-transit_3.3.12-1_source.changes +I: user script /srv/workspace/pbuilder/35206/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/35206/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/tnseq-transit-3.3.12/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../tnseq-transit_3.3.12-1_source.changes dpkg-buildpackage: info: source package tnseq-transit dpkg-buildpackage: info: source version 3.3.12-1 dpkg-buildpackage: info: source distribution unstable @@ -989,57 +1025,57 @@ copying src/pytransit/generic_tools/file_system_py.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/generic_tools copying src/pytransit/generic_tools/__init__.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/generic_tools creating /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytpp -copying src/pytpp/__main__.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytpp copying src/pytpp/tpp_tools.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytpp +copying src/pytpp/__main__.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytpp copying src/pytpp/__init__.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytpp copying src/pytpp/tpp_gui.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytpp -copying src/pytransit/stat_tools.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit -copying src/pytransit/view_trash.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit -copying src/pytransit/__main__.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit copying src/pytransit/transit_gui.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit -copying src/pytransit/tnseq_tools.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit -copying src/pytransit/trash.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit copying src/pytransit/fileDisplay.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit -copying src/pytransit/__init__.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit copying src/pytransit/norm_tools.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit -copying src/pytransit/images.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit +copying src/pytransit/transit_tools.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit copying src/pytransit/qcDisplay.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit copying src/pytransit/draw_trash.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit -copying src/pytransit/transit_tools.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit +copying src/pytransit/view_trash.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit +copying src/pytransit/stat_tools.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit +copying src/pytransit/__main__.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit +copying src/pytransit/trash.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit +copying src/pytransit/images.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit +copying src/pytransit/__init__.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit +copying src/pytransit/tnseq_tools.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit creating /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis -copying src/pytransit/analysis/gi.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis -copying src/pytransit/analysis/normalize.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis -copying src/pytransit/analysis/tn5gaps.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis -copying src/pytransit/analysis/utest.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis +copying src/pytransit/analysis/resampling.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis +copying src/pytransit/analysis/norm.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis +copying src/pytransit/analysis/rankproduct.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis copying src/pytransit/analysis/binomial.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis -copying src/pytransit/analysis/corrplot.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis -copying src/pytransit/analysis/gumbel.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis -copying src/pytransit/analysis/ttnfitness.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis -copying src/pytransit/analysis/zinb.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis copying src/pytransit/analysis/anova.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis -copying src/pytransit/analysis/example.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis -copying src/pytransit/analysis/griffin.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis -copying src/pytransit/analysis/tnseq_stats.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis -copying src/pytransit/analysis/__init__.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis -copying src/pytransit/analysis/norm.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis -copying src/pytransit/analysis/resampling.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis -copying src/pytransit/analysis/pathway_enrichment.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis +copying src/pytransit/analysis/ttnfitness.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis copying src/pytransit/analysis/heatmap.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis -copying src/pytransit/analysis/rankproduct.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis +copying src/pytransit/analysis/example.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis +copying src/pytransit/analysis/gi.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis copying src/pytransit/analysis/CGI.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis -copying src/pytransit/analysis/hmm.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis copying src/pytransit/analysis/base.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis +copying src/pytransit/analysis/hmm.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis +copying src/pytransit/analysis/zinb.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis +copying src/pytransit/analysis/griffin.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis +copying src/pytransit/analysis/pathway_enrichment.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis +copying src/pytransit/analysis/__init__.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis +copying src/pytransit/analysis/tnseq_stats.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis +copying src/pytransit/analysis/utest.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis +copying src/pytransit/analysis/gumbel.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis +copying src/pytransit/analysis/tn5gaps.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis +copying src/pytransit/analysis/normalize.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis +copying src/pytransit/analysis/corrplot.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis creating /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/export copying src/pytransit/export/igv.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/export -copying src/pytransit/export/combined_wig.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/export copying src/pytransit/export/mean_counts.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/export -copying src/pytransit/export/__init__.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/export -copying src/pytransit/export/prot_table.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/export copying src/pytransit/export/base.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/export +copying src/pytransit/export/prot_table.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/export +copying src/pytransit/export/__init__.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/export +copying src/pytransit/export/combined_wig.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/export creating /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/convert -copying src/pytransit/convert/__init__.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/convert copying src/pytransit/convert/gff_to_prot_table.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/convert copying src/pytransit/convert/base.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/convert +copying src/pytransit/convert/__init__.py -> /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/convert running egg_info creating transit1.egg-info writing transit1.egg-info/PKG-INFO @@ -1460,7 +1496,7 @@ ResourceWarning: Enable tracemalloc to get the object allocation traceback [anova] Adding File: /build/reproducible-path/tnseq-transit-3.3.12/tests/testoutput.txt [anova] Finished Anova analysis -[anova] Time: 0.4s +[anova] Time: 0.9s Removing output file... @@ -1484,7 +1520,7 @@ test_resampling_adaptive (tests.test_analysis_methods.TestMethods.test_resampling_adaptive) ... [resampling] [resampling] Performing Benjamini-Hochberg Correction [resampling] Number of significant conditionally essential genes (Padj<0.05): 34 -[resampling] Time: 10.61s +[resampling] Time: 29.40s [resampling] Finished resampling Method Removing output file... @@ -1505,8 +1541,8 @@ ResourceWarning: Enable tracemalloc to get the object allocation traceback [resampling] [resampling] Performing Benjamini-Hochberg Correction -[resampling] Number of significant conditionally essential genes (Padj<0.05): 35 -[resampling] Time: 6.62s +[resampling] Number of significant conditionally essential genes (Padj<0.05): 34 +[resampling] Time: 21.54s [resampling] Finished resampling Method Removing output file... @@ -1524,11 +1560,11 @@ [resampling] Running Resampling Method... 2.0% [resampling] Running Resampling Method... 3.9% [resampling] Running Resampling Method... 5.9% [resampling] Running Resampling Method... 7.8% [resampling] Running Resampling Method... 9.8% [resampling] Running Resampling Method... 11.8% [resampling] Running Resampling Method... 13.7% [resampling] Running Resampling Method... 15.7% [resampling] Running Resampling Method... 17.6% [resampling] Running Resampling Method... 19.6% [resampling] Running Resampling Method... 21.6% [resampling] Running Resampling Method... 23.5% [resampling] Running Resampling Method... 25.5% [resampling] Running Resampling Method... 27.5% [resampling] Running Resampling Method... 29.4% [resampling] Running Resampling Method... 31.4% [resampling] Running Resampling Method... 33.3% [resampling] Running Resampling Method... 35.3% [resampling] Running Resampling Method... 37.3% [resampling] Running Resampling Method... 39.2% [resampling] Running Resampling Method... 41.2% [resampling] Running Resampling Method... 43.1% [resampling] Running Resampling Method... 45.1% [resampling] Running Resampling Method... 47.1% [resampling] Running Resampling Method... 49.0% [resampling] Running Resampling Method... 51.0% [resampling] Running Resampling Method... 52.9% [resampling] Running Resampling Method... 54.9% [resampling] Running Resampling Method... 56.9% [resampling] Running Resampling Method... 58.8% [resampling] Running Resampling Method... 60.8% [resampling] Running Resampling Method... 62.7% [resampling] Running Resampling Method... 64.7% [resampling] Running Resampling Method... 66.7% [resampling] Running Resampling Method... 68.6% [resampling] Running Resampling Method... 70.6% [resampling] Running Resampling Method... 72.5% [resampling] Running Resampling Method... 74.5% [resampling] Running Resampling Method... 76.5% [resampling] Running Resampling Method... 78.4% [resampling] Running Resampling Method... 80.4% [resampling] Running Resampling Method... 82.4% [resampling] Running Resampling Method... 84.3% [resampling] Running Resampling Method... 86.3% [resampling] Running Resampling Method... 88.2% [resampling] Running Resampling Method... 90.2% [resampling] Running Resampling Method... 92.2% [resampling] Running Resampling Method... 94.1% [resampling] Running Resampling Method... 96.1% [resampling] Running Resampling Method... 98.0% [resampling] Running Resampling Method... 100.0% ok test_resampling_histogram (tests.test_analysis_methods.TestMethods.test_resampling_histogram) ... [resampling] [resampling] Performing Benjamini-Hochberg Correction -[resampling] Number of significant conditionally essential genes (Padj<0.05): 36 -[resampling] Time: 6.57s +[resampling] Number of significant conditionally essential genes (Padj<0.05): 35 +[resampling] Time: 19.80s [resampling] Finished resampling Method 38 -36 +35 Removing output file... @@ -1546,7 +1582,7 @@ test_resampling_multistrain (tests.test_analysis_methods.TestMethods.test_resampling_multistrain) ... [resampling] [resampling] Performing Benjamini-Hochberg Correction [resampling] Number of significant conditionally essential genes (Padj<0.05): 35 -[resampling] Time: 12.35s +[resampling] Time: 29.18s [resampling] Finished resampling Method Removing histogram files Removing output file... @@ -1568,7 +1604,7 @@ test_utest (tests.test_analysis_methods.TestMethods.test_utest) ... [resampling] [resampling] Performing Benjamini-Hochberg Correction [resampling] Number of significant conditionally essential genes (Padj<0.05): 35 -[resampling] Time: 22.25s +[resampling] Time: 63.21s [resampling] Finished resampling Method Removing histogram files Removing output file... @@ -1617,7 +1653,7 @@ test_resampling_Quantile (tests.test_norm_methods.TestNormMethods.test_resampling_Quantile) ... [resampling] [resampling] Performing Benjamini-Hochberg Correction [resampling] Number of significant conditionally essential genes (Padj<0.05): 0 -[resampling] Time: 1.18s +[resampling] Time: 3.81s [resampling] Finished resampling Method Removing output file... @@ -1639,7 +1675,7 @@ test_resampling_TTR (tests.test_norm_methods.TestNormMethods.test_resampling_TTR) ... [resampling] [resampling] Performing Benjamini-Hochberg Correction [resampling] Number of significant conditionally essential genes (Padj<0.05): 0 -[resampling] Time: 1.38s +[resampling] Time: 4.29s [resampling] Finished resampling Method Removing output file... @@ -1658,7 +1694,7 @@ test_resampling_TotReads (tests.test_norm_methods.TestNormMethods.test_resampling_TotReads) ... [resampling] [resampling] Performing Benjamini-Hochberg Correction [resampling] Number of significant conditionally essential genes (Padj<0.05): 0 -[resampling] Time: 1.15s +[resampling] Time: 3.79s [resampling] Finished resampling Method Removing output file... @@ -1677,7 +1713,7 @@ test_resampling_ZINFNB (tests.test_norm_methods.TestNormMethods.test_resampling_ZINFNB) ... [resampling] [resampling] Performing Benjamini-Hochberg Correction [resampling] Number of significant conditionally essential genes (Padj<0.05): 0 -[resampling] Time: 1.27s +[resampling] Time: 3.70s [resampling] Finished resampling Method Removing output file... @@ -1696,7 +1732,7 @@ test_resampling_nonorm (tests.test_norm_methods.TestNormMethods.test_resampling_nonorm) ... [resampling] [resampling] Performing Benjamini-Hochberg Correction [resampling] Number of significant conditionally essential genes (Padj<0.05): 1 -[resampling] Time: 14.08s +[resampling] Time: 43.17s [resampling] Finished resampling Method Removing output file... @@ -1750,23 +1786,23 @@ ResourceWarning: Enable tracemalloc to get the object allocation traceback [tn_preprocess] mapping reads using BWA...(this takes a couple of minutes) [tn_preprocess] /usr/bin/bwa index /build/reproducible-path/tnseq-transit-3.3.12/tests/data/test-multicontig.fna -b'[bwa_index] Pack FASTA... 0.07 sec' +b'[bwa_index] Pack FASTA... 0.30 sec' b'[bwa_index] Construct BWT for the packed sequence...' -b'[bwa_index] 1.40 seconds elapse.' -b'[bwa_index] Update BWT... 0.06 sec' -b'[bwa_index] Pack forward-only FASTA... 0.04 sec' -b'[bwa_index] Construct SA from BWT and Occ... 0.64 sec' +b'[bwa_index] 3.36 seconds elapse.' +b'[bwa_index] Update BWT... 0.10 sec' +b'[bwa_index] Pack forward-only FASTA... 0.08 sec' +b'[bwa_index] Construct SA from BWT and Occ... 1.46 sec' b'[main] Version: 0.7.18-r1243-dirty' b'[main] CMD: /usr/bin/bwa index /build/reproducible-path/tnseq-transit-3.3.12/tests/data/test-multicontig.fna' -b'[main] Real time: 2.266 sec; CPU: 2.204 sec' +b'[main] Real time: 18.054 sec; CPU: 5.301 sec' b'' [tn_preprocess] /usr/bin/bwa mem /build/reproducible-path/tnseq-transit-3.3.12/tests/data/test-multicontig.fna /build/reproducible-path/tnseq-transit-3.3.12/tests/test_tpp_temp.trimmed1 > /build/reproducible-path/tnseq-transit-3.3.12/tests/test_tpp_temp.sam b'[M::bwa_idx_load_from_disk] read 0 ALT contigs' b'[M::process] read 2500 sequences (304052 bp)...' -b'[M::mem_process_seqs] Processed 2500 reads in 0.222 CPU sec, 0.221 real sec' +b'[M::mem_process_seqs] Processed 2500 reads in 0.444 CPU sec, 1.256 real sec' b'[main] Version: 0.7.18-r1243-dirty' b'[main] CMD: /usr/bin/bwa mem /build/reproducible-path/tnseq-transit-3.3.12/tests/data/test-multicontig.fna /build/reproducible-path/tnseq-transit-3.3.12/tests/test_tpp_temp.trimmed1' -b'[main] Real time: 0.235 sec; CPU: 0.232 sec' +b'[main] Real time: 7.419 sec; CPU: 0.667 sec' b'' [tn_preprocess] tabulating template counts and statistics for reference genome /build/reproducible-path/tnseq-transit-3.3.12/tests/data/test-multicontig.fna /build/reproducible-path/tnseq-transit-3.3.12/tests/../src/pytpp/tpp_tools.py:385: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/tnseq-transit-3.3.12/tests/data/test-multicontig.fna' mode='r' encoding='UTF-8'> @@ -1804,10 +1840,10 @@ [tn_preprocess] /usr/bin/bwa mem /build/reproducible-path/tnseq-transit-3.3.12/tests/data/test-multicontig.fna /build/reproducible-path/tnseq-transit-3.3.12/tests/test_tpp_temp.trimmed1 > /build/reproducible-path/tnseq-transit-3.3.12/tests/test_tpp_temp.sam b'[M::bwa_idx_load_from_disk] read 0 ALT contigs' b'[M::process] read 2500 sequences (304052 bp)...' -b'[M::mem_process_seqs] Processed 2500 reads in 0.220 CPU sec, 0.220 real sec' +b'[M::mem_process_seqs] Processed 2500 reads in 0.481 CPU sec, 0.488 real sec' b'[main] Version: 0.7.18-r1243-dirty' b'[main] CMD: /usr/bin/bwa mem /build/reproducible-path/tnseq-transit-3.3.12/tests/data/test-multicontig.fna /build/reproducible-path/tnseq-transit-3.3.12/tests/test_tpp_temp.trimmed1' -b'[main] Real time: 0.233 sec; CPU: 0.231 sec' +b'[main] Real time: 7.693 sec; CPU: 0.701 sec' b'' [tn_preprocess] tabulating template counts and statistics for reference genome /build/reproducible-path/tnseq-transit-3.3.12/tests/data/test-multicontig.fna [tn_preprocess] writing /build/reproducible-path/tnseq-transit-3.3.12/tests/test_tpp_temp_a.wig @@ -1820,13 +1856,13 @@ test_tpp_protocol_mme1 (tests.test_tpp.TestTPP.test_tpp_protocol_mme1) ... skipped 'requires local data file' ---------------------------------------------------------------------- -Ran 39 tests in 119.417s +Ran 39 tests in 399.599s OK (skipped=6) [resampling] [resampling] Performing Benjamini-Hochberg Correction [resampling] Number of significant conditionally essential genes (Padj<0.05): 0 -[resampling] Time: 1.08s +[resampling] Time: 2.59s [resampling] Finished resampling Method Removing output file... @@ -1892,7 +1928,7 @@ /build/reproducible-path/tnseq-transit-3.3.12/tests/data/test-multicontig-1.fastq # title: Tn-Seq Pre-Processor -# date: 03/11/2026 08:13:50 +# date: 02/07/2025 04:02:23 # command: python python3.13 -m unittest -v tests/test_analysis_methods.py tests/test_norm_methods.py tests/test_pytransit_tools.py tests/test_tpp.py tests/transit_test.py # transposon type: Himar1 # protocol type: Sassetti @@ -1976,7 +2012,7 @@ /build/reproducible-path/tnseq-transit-3.3.12/tests/data/test-multicontig-1.fastq # title: Tn-Seq Pre-Processor -# date: 03/11/2026 08:13:51 +# date: 02/07/2025 04:02:36 # command: python python3.13 -m unittest -v tests/test_analysis_methods.py tests/test_norm_methods.py tests/test_pytransit_tools.py tests/test_tpp.py tests/transit_test.py # transposon type: Himar1 # protocol type: Sassetti @@ -2215,156 +2251,156 @@ running install_lib creating /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages creating /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/stat_tools.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/view_trash.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/DejaVuSans.ttf -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/__main__.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit -creating /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/convert -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/convert/__init__.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/convert -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/convert/gff_to_prot_table.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/convert -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/convert/base.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/convert -creating /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/genomes -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/genomes/H37Rv.fna -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/genomes -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/genomes/mc2_155_tamu.prot_table -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/genomes -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/genomes/H37RvBD_mod3.prot_table -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/genomes -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/genomes/H37RvBD.prot_table -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/genomes -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/genomes/genomes.html -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/genomes -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/genomes/H37Rv.prot_table -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/genomes -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/genomes/mc2_155_tamu.fna -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/genomes -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/genomes/H37RvBD.fna -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/genomes -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/genomes/BCG.prot_table -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/genomes -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/genomes/BCG.fna -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/genomes -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/genomes/H37RvMA2.fna -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/genomes -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/genomes/H37RvMA2.prot_table -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/genomes -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/transit_gui.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/tnseq_tools.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/trash.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/fileDisplay.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/__init__.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit -creating /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/export -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/export/igv.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/export -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/export/combined_wig.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/export -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/export/mean_counts.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/export -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/export/__init__.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/export -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/export/prot_table.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/export -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/export/base.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/export -creating /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis/gi.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis/normalize.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis/tn5gaps.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis/utest.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis/binomial.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis/corrplot.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis/gumbel.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis/ttnfitness.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis/zinb.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis/anova.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis/example.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis/griffin.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis/tnseq_stats.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis/__init__.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis/norm.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis/resampling.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis/pathway_enrichment.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis/heatmap.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis/rankproduct.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis/CGI.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis/hmm.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis/base.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/norm_tools.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/images.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit creating /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/generic_tools copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/generic_tools/file_system_py.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/generic_tools copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/generic_tools/__init__.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/generic_tools +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/transit_gui.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/DejaVuSans.ttf -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/fileDisplay.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/norm_tools.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit creating /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/data -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/data/GO_associated_Rvs-3-11-18.txt -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/data -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/data/iron_samples_metadata.txt -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/data -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/data/H37Rv.sanger_associated_RVS.csv -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/data -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/data/cholesterol_H37Rv_merged.wig -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/data -creating /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/data/CGI -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/data/CGI/RIF_D1_combined_counts.txt -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/data/CGI -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/data/CGI/samples_metadata.txt -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/data/CGI -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/data/CGI/uninduced_ATC_counts.txt -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/data/CGI -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/data/CGI/IDs.H37Rv.CRISPRi.lib.txt -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/data/CGI -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/data/CGI/sgRNA_info.txt -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/data/CGI -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/data/GO_associated_Rvs.csv -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/data copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/data/cholesterol_H37Rv_rep3.wig -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/data +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/data/README.md -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/data +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/data/cholesterol_H37Rv_rep2.wig -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/data +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/data/cholesterol_glycerol_combined.dat -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/data +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/data/H37Rv_sanger_roles.dat -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/data copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/data/GO_term_names.dat -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/data +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/data/smeg_COG_roles.dat -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/data +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/data/H37Rv.sanger_associated_RVS.csv -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/data +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/data/H37Rv_GO_terms.txt -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/data copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/data/sanger_roles.dat -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/data -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/data/samples_metadata_cg_interactions.txt -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/data +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/data/GO_terms_for_each_Rv.obo-3-11-18.txt -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/data +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/data/COG_roles.dat -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/data copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/data/samples_metadata_cg.txt -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/data +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/data/GO_associated_Rvs-3-11-18.txt -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/data +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/data/GO_associated_Rvs.csv -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/data copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/data/cholesterol_H37Rv_rep1.wig -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/data -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/data/glycerol_H37Rv_merged.wig -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/data -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/data/H37Rv_COG_roles.dat -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/data -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/data/COG_roles.dat -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/data -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/data/cholesterol_glycerol_combined.dat -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/data -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/data/samples_metadata_cg_covar.txt -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/data -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/data/glycerol_H37Rv_rep1.wig -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/data -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/data/smeg_COG_roles.dat -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/data -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/data/H37Rv_sanger_roles.dat -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/data +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/data/cholesterol_H37Rv_merged.wig -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/data copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/data/iron_combined_wig4.txt -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/data -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/data/README.md -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/data +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/data/samples_metadata_cg_interactions.txt -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/data copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/data/glycerol_H37Rv_rep2.wig -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/data -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/data/cholesterol_H37Rv_rep2.wig -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/data -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/data/GO_terms_for_each_Rv.obo-3-11-18.txt -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/data copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/data/smeg_GO_terms.txt -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/data -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/data/H37Rv_GO_terms.txt -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/data +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/data/glycerol_H37Rv_rep1.wig -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/data +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/data/iron_samples_metadata.txt -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/data +creating /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/data/CGI +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/data/CGI/samples_metadata.txt -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/data/CGI +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/data/CGI/IDs.H37Rv.CRISPRi.lib.txt -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/data/CGI +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/data/CGI/uninduced_ATC_counts.txt -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/data/CGI +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/data/CGI/sgRNA_info.txt -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/data/CGI +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/data/CGI/RIF_D1_combined_counts.txt -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/data/CGI +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/data/H37Rv_COG_roles.dat -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/data +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/data/glycerol_H37Rv_merged.wig -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/data +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/data/samples_metadata_cg_covar.txt -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/data +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/transit_tools.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/qcDisplay.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/draw_trash.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/transit_tools.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/view_trash.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit +creating /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/genomes +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/genomes/BCG.fna -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/genomes +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/genomes/BCG.prot_table -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/genomes +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/genomes/H37Rv.fna -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/genomes +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/genomes/H37RvMA2.fna -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/genomes +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/genomes/genomes.html -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/genomes +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/genomes/H37RvBD_mod3.prot_table -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/genomes +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/genomes/H37RvMA2.prot_table -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/genomes +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/genomes/H37Rv.prot_table -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/genomes +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/genomes/H37RvBD.fna -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/genomes +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/genomes/H37RvBD.prot_table -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/genomes +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/genomes/mc2_155_tamu.prot_table -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/genomes +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/genomes/mc2_155_tamu.fna -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/genomes +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/stat_tools.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/__main__.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/trash.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit +creating /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/convert +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/convert/gff_to_prot_table.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/convert +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/convert/base.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/convert +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/convert/__init__.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/convert +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/images.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/__init__.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit +creating /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis/resampling.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis/norm.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis/rankproduct.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis/binomial.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis/anova.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis/ttnfitness.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis/heatmap.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis/example.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis/gi.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis/CGI.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis/base.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis/hmm.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis/zinb.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis/griffin.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis/pathway_enrichment.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis/__init__.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis/tnseq_stats.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis/utest.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis/gumbel.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis/tn5gaps.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis/normalize.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/analysis/corrplot.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis +creating /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/export +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/export/igv.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/export +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/export/mean_counts.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/export +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/export/base.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/export +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/export/prot_table.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/export +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/export/__init__.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/export +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/export/combined_wig.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/export +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytransit/tnseq_tools.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit creating /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytpp -copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytpp/__main__.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytpp copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytpp/tpp_tools.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytpp +copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytpp/__main__.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytpp copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytpp/__init__.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytpp copying /build/reproducible-path/tnseq-transit-3.3.12/.pybuild/cpython3_3.13/build/pytpp/tpp_gui.py -> /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytpp -byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/stat_tools.py to stat_tools.cpython-313.pyc +byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/generic_tools/file_system_py.py to file_system_py.cpython-313.pyc +byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/generic_tools/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/transit_gui.py to transit_gui.cpython-313.pyc +byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/fileDisplay.py to fileDisplay.cpython-313.pyc +byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/norm_tools.py to norm_tools.cpython-313.pyc +byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/transit_tools.py to transit_tools.cpython-313.pyc +byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/qcDisplay.py to qcDisplay.cpython-313.pyc +byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/draw_trash.py to draw_trash.cpython-313.pyc byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/view_trash.py to view_trash.cpython-313.pyc +byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/stat_tools.py to stat_tools.cpython-313.pyc byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/__main__.py to __main__.cpython-313.pyc -byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/convert/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/trash.py to trash.cpython-313.pyc byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/convert/gff_to_prot_table.py to gff_to_prot_table.cpython-313.pyc byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/convert/base.py to base.cpython-313.pyc -byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/transit_gui.py to transit_gui.cpython-313.pyc -byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/tnseq_tools.py to tnseq_tools.cpython-313.pyc -byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/trash.py to trash.cpython-313.pyc -byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/fileDisplay.py to fileDisplay.cpython-313.pyc +byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/convert/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/images.py to images.cpython-313.pyc byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/export/igv.py to igv.cpython-313.pyc -byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/export/combined_wig.py to combined_wig.cpython-313.pyc -byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/export/mean_counts.py to mean_counts.cpython-313.pyc -byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/export/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/export/prot_table.py to prot_table.cpython-313.pyc -byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/export/base.py to base.cpython-313.pyc -byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis/gi.py to gi.cpython-313.pyc -byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis/normalize.py to normalize.cpython-313.pyc -byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis/tn5gaps.py to tn5gaps.cpython-313.pyc -byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis/utest.py to utest.cpython-313.pyc +byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis/resampling.py to resampling.cpython-313.pyc +byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis/norm.py to norm.cpython-313.pyc +byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis/rankproduct.py to rankproduct.cpython-313.pyc byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis/binomial.py to binomial.cpython-313.pyc -byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis/corrplot.py to corrplot.cpython-313.pyc -byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis/gumbel.py to gumbel.cpython-313.pyc -byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis/ttnfitness.py to ttnfitness.cpython-313.pyc -byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis/zinb.py to zinb.cpython-313.pyc byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis/anova.py to anova.cpython-313.pyc -byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis/example.py to example.cpython-313.pyc -byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis/griffin.py to griffin.cpython-313.pyc -byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis/tnseq_stats.py to tnseq_stats.cpython-313.pyc -byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis/norm.py to norm.cpython-313.pyc -byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis/resampling.py to resampling.cpython-313.pyc -byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis/pathway_enrichment.py to pathway_enrichment.cpython-313.pyc +byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis/ttnfitness.py to ttnfitness.cpython-313.pyc byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis/heatmap.py to heatmap.cpython-313.pyc -byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis/rankproduct.py to rankproduct.cpython-313.pyc +byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis/example.py to example.cpython-313.pyc +byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis/gi.py to gi.cpython-313.pyc byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis/CGI.py to CGI.cpython-313.pyc -byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis/hmm.py to hmm.cpython-313.pyc byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis/base.py to base.cpython-313.pyc -byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/norm_tools.py to norm_tools.cpython-313.pyc -byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/images.py to images.cpython-313.pyc -byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/generic_tools/file_system_py.py to file_system_py.cpython-313.pyc -byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/generic_tools/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/qcDisplay.py to qcDisplay.cpython-313.pyc -byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/draw_trash.py to draw_trash.cpython-313.pyc -byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/transit_tools.py to transit_tools.cpython-313.pyc -byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytpp/__main__.py to __main__.cpython-313.pyc +byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis/hmm.py to hmm.cpython-313.pyc +byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis/zinb.py to zinb.cpython-313.pyc +byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis/griffin.py to griffin.cpython-313.pyc +byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis/pathway_enrichment.py to pathway_enrichment.cpython-313.pyc +byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis/tnseq_stats.py to tnseq_stats.cpython-313.pyc +byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis/utest.py to utest.cpython-313.pyc +byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis/gumbel.py to gumbel.cpython-313.pyc +byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis/tn5gaps.py to tn5gaps.cpython-313.pyc +byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis/normalize.py to normalize.cpython-313.pyc +byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/analysis/corrplot.py to corrplot.cpython-313.pyc +byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/export/igv.py to igv.cpython-313.pyc +byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/export/mean_counts.py to mean_counts.cpython-313.pyc +byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/export/base.py to base.cpython-313.pyc +byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/export/prot_table.py to prot_table.cpython-313.pyc +byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/export/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/export/combined_wig.py to combined_wig.cpython-313.pyc +byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytransit/tnseq_tools.py to tnseq_tools.cpython-313.pyc byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytpp/tpp_tools.py to tpp_tools.cpython-313.pyc +byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytpp/__main__.py to __main__.cpython-313.pyc byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytpp/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/tnseq-transit-3.3.12/debian/tnseq-transit/usr/lib/python3.13/dist-packages/pytpp/tpp_gui.py to tpp_gui.cpython-313.pyc running install_egg_info @@ -2404,12 +2440,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/35206/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/35206/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/31039 and its subdirectories -I: Current time: Wed Mar 11 08:14:25 -12 2026 -I: pbuilder-time-stamp: 1773260065 +I: removing directory /srv/workspace/pbuilder/35206 and its subdirectories +I: Current time: Fri Feb 7 04:04:55 +14 2025 +I: pbuilder-time-stamp: 1738850695