Diff of the two buildlogs: -- --- b1/build.log 2024-03-28 11:57:19.266775645 +0000 +++ b2/build.log 2024-03-28 12:06:16.175642731 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Apr 30 06:18:07 -12 2025 -I: pbuilder-time-stamp: 1746037087 +I: Current time: Fri Mar 29 01:57:22 +14 2024 +I: pbuilder-time-stamp: 1711627042 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -30,54 +30,86 @@ dpkg-source: info: applying shared_and_static.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/15333/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3075/tmp/hooks/D01_modify_environment starting +debug: Running on ionos2-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Mar 28 11:57 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3075/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3075/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=7 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='f40a4c24a5ee4b1e92f1bba51e435980' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='15333' - PS1='# ' - PS2='> ' + INVOCATION_ID=1fb730f1f302416c80292e8bb581836a + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3075 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.5luzEQdJ/pbuilderrc_Qf8C --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.5luzEQdJ/b1 --logfile b1/build.log spoa_4.1.4-1.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.5luzEQdJ/pbuilderrc_KAMe --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.5luzEQdJ/b2 --logfile b2/build.log spoa_4.1.4-1.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux ionos16-i386 6.1.0-18-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.76-1 (2024-02-01) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-18-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.76-1 (2024-02-01) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Apr 29 17:46 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/15333/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Mar 28 11:24 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3075/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -187,7 +219,7 @@ Get: 56 http://deb.debian.org/debian trixie/main i386 libcpu-features-dev i386 0.9.0-1+b1 [23.0 kB] Get: 57 http://deb.debian.org/debian trixie/main i386 libgtest-dev i386 1.14.0-1+b1 [263 kB] Get: 58 http://deb.debian.org/debian trixie/main i386 libsimde-dev all 0.8.0-1 [458 kB] -Fetched 38.9 MB in 2s (18.7 MB/s) +Fetched 38.9 MB in 2s (19.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19816 files and directories currently installed.) @@ -434,7 +466,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/spoa-4.1.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../spoa_4.1.4-1_source.changes +I: user script /srv/workspace/pbuilder/3075/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/3075/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/spoa-4.1.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../spoa_4.1.4-1_source.changes dpkg-buildpackage: info: source package spoa dpkg-buildpackage: info: source version 4.1.4-1 dpkg-buildpackage: info: source distribution unstable @@ -459,8 +495,8 @@ -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done --- Configuring done (0.4s) --- Generating done (0.0s) +-- Configuring done (3.7s) +-- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -593,56 +629,56 @@ [----------] Global test environment set-up. [----------] 3 tests from SpoaAlignmentTest [ RUN ] SpoaAlignmentTest.TypeError -[ OK ] SpoaAlignmentTest.TypeError (0 ms) +[ OK ] SpoaAlignmentTest.TypeError (3 ms) [ RUN ] SpoaAlignmentTest.EmptyInput [ OK ] SpoaAlignmentTest.EmptyInput (0 ms) [ RUN ] SpoaAlignmentTest.LargeInput [ OK ] SpoaAlignmentTest.LargeInput (0 ms) -[----------] 3 tests from SpoaAlignmentTest (0 ms total) +[----------] 3 tests from SpoaAlignmentTest (4 ms total) [----------] 19 tests from SpoaTest [ RUN ] SpoaTest.Clear -[ OK ] SpoaTest.Clear (2494 ms) +[ OK ] SpoaTest.Clear (7242 ms) [ RUN ] SpoaTest.Local -[ OK ] SpoaTest.Local (1250 ms) +[ OK ] SpoaTest.Local (3190 ms) [ RUN ] SpoaTest.LocalAffine -[ OK ] SpoaTest.LocalAffine (1441 ms) +[ OK ] SpoaTest.LocalAffine (4181 ms) [ RUN ] SpoaTest.LocalConvex -[ OK ] SpoaTest.LocalConvex (2585 ms) +[ OK ] SpoaTest.LocalConvex (9698 ms) [ RUN ] SpoaTest.LocalWithQualities -[ OK ] SpoaTest.LocalWithQualities (1250 ms) +[ OK ] SpoaTest.LocalWithQualities (3441 ms) [ RUN ] SpoaTest.LocalAffineWithQualities -[ OK ] SpoaTest.LocalAffineWithQualities (1441 ms) +[ OK ] SpoaTest.LocalAffineWithQualities (4660 ms) [ RUN ] SpoaTest.LocalConvexWithQualities -[ OK ] SpoaTest.LocalConvexWithQualities (2584 ms) +[ OK ] SpoaTest.LocalConvexWithQualities (9214 ms) [ RUN ] SpoaTest.Global -[ OK ] SpoaTest.Global (1193 ms) +[ OK ] SpoaTest.Global (2922 ms) [ RUN ] SpoaTest.GlobalAffine -[ OK ] SpoaTest.GlobalAffine (1386 ms) +[ OK ] SpoaTest.GlobalAffine (2644 ms) [ RUN ] SpoaTest.GlobalConvex -[ OK ] SpoaTest.GlobalConvex (2524 ms) +[ OK ] SpoaTest.GlobalConvex (6083 ms) [ RUN ] SpoaTest.GlobalWithQualities -[ OK ] SpoaTest.GlobalWithQualities (1193 ms) +[ OK ] SpoaTest.GlobalWithQualities (2501 ms) [ RUN ] SpoaTest.GlobalAffineWithQualities -[ OK ] SpoaTest.GlobalAffineWithQualities (1387 ms) +[ OK ] SpoaTest.GlobalAffineWithQualities (3599 ms) [ RUN ] SpoaTest.GlobalConvexWithQualities -[ OK ] SpoaTest.GlobalConvexWithQualities (2520 ms) +[ OK ] SpoaTest.GlobalConvexWithQualities (9572 ms) [ RUN ] SpoaTest.SemiGlobal -[ OK ] SpoaTest.SemiGlobal (1192 ms) +[ OK ] SpoaTest.SemiGlobal (3505 ms) [ RUN ] SpoaTest.SemiGlobalAffine -[ OK ] SpoaTest.SemiGlobalAffine (1379 ms) +[ OK ] SpoaTest.SemiGlobalAffine (4659 ms) [ RUN ] SpoaTest.SemiGlobalConvex -[ OK ] SpoaTest.SemiGlobalConvex (2524 ms) +[ OK ] SpoaTest.SemiGlobalConvex (7927 ms) [ RUN ] SpoaTest.SemiGlobalWithQualities -[ OK ] SpoaTest.SemiGlobalWithQualities (1186 ms) +[ OK ] SpoaTest.SemiGlobalWithQualities (3005 ms) [ RUN ] SpoaTest.SemiGlobalAffineWithQualities -[ OK ] SpoaTest.SemiGlobalAffineWithQualities (1381 ms) +[ OK ] SpoaTest.SemiGlobalAffineWithQualities (3686 ms) [ RUN ] SpoaTest.SemiGlobalConvexWithQualities -[ OK ] SpoaTest.SemiGlobalConvexWithQualities (2523 ms) -[----------] 19 tests from SpoaTest (33441 ms total) +[ OK ] SpoaTest.SemiGlobalConvexWithQualities (7861 ms) +[----------] 19 tests from SpoaTest (99640 ms total) [----------] Global test environment tear-down -[==========] 22 tests from 2 test suites ran. (33442 ms total) +[==========] 22 tests from 2 test suites ran. (99645 ms total) [ PASSED ] 22 tests. `find . -name spoa | grep bin` test/data/sample.fastq.gz >Consensus LN:i:495 @@ -666,10 +702,10 @@ -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/i386-linux-gnu/libspoa.so -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/i386-linux-gnu/libspoa_static.a -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/include/spoa --- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/include/spoa/alignment_engine.hpp --- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/include/spoa/spoa.hpp -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/include/spoa/graph.hpp -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/include/spoa/version.hpp +-- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/include/spoa/spoa.hpp +-- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/include/spoa/alignment_engine.hpp -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/i386-linux-gnu/cmake/spoa/spoaTargets.cmake -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/i386-linux-gnu/cmake/spoa/spoaTargets-release.cmake -- Installing: /build/reproducible-path/spoa-4.1.4/debian/tmp/usr/lib/i386-linux-gnu/cmake/spoa/spoaConfig.cmake @@ -723,8 +759,8 @@ dh_builddeb -O--no-parallel dpkg-deb: building package 'spoa-dbgsym' in '../spoa-dbgsym_4.1.4-1_i386.deb'. dpkg-deb: building package 'spoa' in '../spoa_4.1.4-1_i386.deb'. -dpkg-deb: building package 'libspoa7.0.0' in '../libspoa7.0.0_4.1.4-1_i386.deb'. dpkg-deb: building package 'libspoa7.0.0-dbgsym' in '../libspoa7.0.0-dbgsym_4.1.4-1_i386.deb'. +dpkg-deb: building package 'libspoa7.0.0' in '../libspoa7.0.0_4.1.4-1_i386.deb'. dpkg-deb: building package 'libspoa-dev' in '../libspoa-dev_4.1.4-1_i386.deb'. dpkg-genbuildinfo --build=binary -O../spoa_4.1.4-1_i386.buildinfo dpkg-genchanges --build=binary -O../spoa_4.1.4-1_i386.changes @@ -733,12 +769,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3075/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3075/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/15333 and its subdirectories -I: Current time: Wed Apr 30 06:20:17 -12 2025 -I: pbuilder-time-stamp: 1746037217 +I: removing directory /srv/workspace/pbuilder/3075 and its subdirectories +I: Current time: Fri Mar 29 02:06:15 +14 2024 +I: pbuilder-time-stamp: 1711627575