Diff of the two buildlogs: -- --- b1/build.log 2024-12-03 14:07:55.753052213 +0000 +++ b2/build.log 2024-12-03 14:10:22.694391589 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Jan 5 08:29:54 -12 2026 -I: pbuilder-time-stamp: 1767644994 +I: Current time: Wed Dec 4 04:08:01 +14 2024 +I: pbuilder-time-stamp: 1733234881 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -31,53 +31,85 @@ dpkg-source: info: applying gcc-14.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1783/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/14077/tmp/hooks/D01_modify_environment starting +debug: Running on infom07-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 3 14:08 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/14077/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/14077/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=6 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=5 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='355c9887f7c9436ca9b7748598261efc' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1783' - PS1='# ' - PS2='> ' + INVOCATION_ID=a68dc2c19aef4298a2f09adeafc197d3 + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=14077 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.NUIbTlRP/pbuilderrc_vigN --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.NUIbTlRP/b1 --logfile b1/build.log savvy_2.1.0-3.dsc' - SUDO_GID='111' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.NUIbTlRP/pbuilderrc_lyqd --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.NUIbTlRP/b2 --logfile b2/build.log savvy_2.1.0-3.dsc' + SUDO_GID=111 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' I: uname -a - Linux infom08-i386 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1783/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/14077/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -177,7 +209,7 @@ Get: 54 http://deb.debian.org/debian trixie/main i386 libshrinkwrap-dev all 1.2.0-2 [12.3 kB] Get: 55 http://deb.debian.org/debian trixie/main i386 libzstd-dev i386 1.5.6+dfsg-1+b1 [355 kB] Get: 56 http://deb.debian.org/debian trixie/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1+b1 [916 kB] -Fetched 40.0 MB in 0s (81.3 MB/s) +Fetched 40.0 MB in 0s (89.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19950 files and directories currently installed.) @@ -416,7 +448,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/savvy-2.1.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../savvy_2.1.0-3_source.changes +I: user script /srv/workspace/pbuilder/14077/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/14077/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/savvy-2.1.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../savvy_2.1.0-3_source.changes dpkg-buildpackage: info: source package savvy dpkg-buildpackage: info: source version 2.1.0-3 dpkg-buildpackage: info: source distribution unstable @@ -455,7 +491,7 @@ -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE --- Configuring done (0.8s) +-- Configuring done (1.8s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -467,7 +503,7 @@ -- Build files have been written to: /build/reproducible-path/savvy-2.1.0/obj-i686-linux-gnu dh_auto_build - cd obj-i686-linux-gnu && make -j6 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-i686-linux-gnu && make -j5 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/savvy-2.1.0/obj-i686-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/savvy-2.1.0 -B/build/reproducible-path/savvy-2.1.0/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/savvy-2.1.0/obj-i686-linux-gnu/CMakeFiles /build/reproducible-path/savvy-2.1.0/obj-i686-linux-gnu//CMakeFiles/progress.marks @@ -479,23 +515,19 @@ make[3]: Leaving directory '/build/reproducible-path/savvy-2.1.0/obj-i686-linux-gnu' make -f CMakeFiles/sav.dir/build.make CMakeFiles/sav.dir/build make[3]: Entering directory '/build/reproducible-path/savvy-2.1.0/obj-i686-linux-gnu' -[ 8%] Building CXX object CMakeFiles/sav.dir/src/sav/concat.cpp.o -[ 25%] Building CXX object CMakeFiles/sav.dir/src/sav/main.cpp.o +[ 8%] Building CXX object CMakeFiles/sav.dir/src/sav/main.cpp.o +/usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -I/build/reproducible-path/savvy-2.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/savvy-2.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -MD -MT CMakeFiles/sav.dir/src/sav/main.cpp.o -MF CMakeFiles/sav.dir/src/sav/main.cpp.o.d -o CMakeFiles/sav.dir/src/sav/main.cpp.o -c /build/reproducible-path/savvy-2.1.0/src/sav/main.cpp +[ 16%] Building CXX object CMakeFiles/sav.dir/src/sav/concat.cpp.o /usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -I/build/reproducible-path/savvy-2.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/savvy-2.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -MD -MT CMakeFiles/sav.dir/src/sav/concat.cpp.o -MF CMakeFiles/sav.dir/src/sav/concat.cpp.o.d -o CMakeFiles/sav.dir/src/sav/concat.cpp.o -c /build/reproducible-path/savvy-2.1.0/src/sav/concat.cpp -[ 16%] Building CXX object CMakeFiles/sav.dir/src/sav/export.cpp.o +[ 25%] Building CXX object CMakeFiles/sav.dir/src/sav/export.cpp.o /usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -I/build/reproducible-path/savvy-2.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/savvy-2.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -MD -MT CMakeFiles/sav.dir/src/sav/export.cpp.o -MF CMakeFiles/sav.dir/src/sav/export.cpp.o.d -o CMakeFiles/sav.dir/src/sav/export.cpp.o -c /build/reproducible-path/savvy-2.1.0/src/sav/export.cpp -[ 33%] Building CXX object CMakeFiles/sav.dir/src/sav/import.cpp.o -[ 41%] Building CXX object CMakeFiles/sav.dir/src/sav/head.cpp.o -[ 50%] Building CXX object CMakeFiles/sav.dir/src/sav/index.cpp.o -/usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -I/build/reproducible-path/savvy-2.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/savvy-2.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -MD -MT CMakeFiles/sav.dir/src/sav/main.cpp.o -MF CMakeFiles/sav.dir/src/sav/main.cpp.o.d -o CMakeFiles/sav.dir/src/sav/main.cpp.o -c /build/reproducible-path/savvy-2.1.0/src/sav/main.cpp -/usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -I/build/reproducible-path/savvy-2.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/savvy-2.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -MD -MT CMakeFiles/sav.dir/src/sav/import.cpp.o -MF CMakeFiles/sav.dir/src/sav/import.cpp.o.d -o CMakeFiles/sav.dir/src/sav/import.cpp.o -c /build/reproducible-path/savvy-2.1.0/src/sav/import.cpp +[ 33%] Building CXX object CMakeFiles/sav.dir/src/sav/head.cpp.o /usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -I/build/reproducible-path/savvy-2.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/savvy-2.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -MD -MT CMakeFiles/sav.dir/src/sav/head.cpp.o -MF CMakeFiles/sav.dir/src/sav/head.cpp.o.d -o CMakeFiles/sav.dir/src/sav/head.cpp.o -c /build/reproducible-path/savvy-2.1.0/src/sav/head.cpp +[ 41%] Building CXX object CMakeFiles/sav.dir/src/sav/import.cpp.o +/usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -I/build/reproducible-path/savvy-2.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/savvy-2.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -MD -MT CMakeFiles/sav.dir/src/sav/import.cpp.o -MF CMakeFiles/sav.dir/src/sav/import.cpp.o.d -o CMakeFiles/sav.dir/src/sav/import.cpp.o -c /build/reproducible-path/savvy-2.1.0/src/sav/import.cpp +[ 50%] Building CXX object CMakeFiles/sav.dir/src/sav/index.cpp.o /usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -I/build/reproducible-path/savvy-2.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/savvy-2.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -MD -MT CMakeFiles/sav.dir/src/sav/index.cpp.o -MF CMakeFiles/sav.dir/src/sav/index.cpp.o.d -o CMakeFiles/sav.dir/src/sav/index.cpp.o -c /build/reproducible-path/savvy-2.1.0/src/sav/index.cpp -[ 58%] Building CXX object CMakeFiles/sav.dir/src/sav/merge.cpp.o -/usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -I/build/reproducible-path/savvy-2.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/savvy-2.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -MD -MT CMakeFiles/sav.dir/src/sav/merge.cpp.o -MF CMakeFiles/sav.dir/src/sav/merge.cpp.o.d -o CMakeFiles/sav.dir/src/sav/merge.cpp.o -c /build/reproducible-path/savvy-2.1.0/src/sav/merge.cpp -[ 66%] Building CXX object CMakeFiles/sav.dir/src/sav/rehead.cpp.o -/usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -I/build/reproducible-path/savvy-2.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/savvy-2.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -MD -MT CMakeFiles/sav.dir/src/sav/rehead.cpp.o -MF CMakeFiles/sav.dir/src/sav/rehead.cpp.o.d -o CMakeFiles/sav.dir/src/sav/rehead.cpp.o -c /build/reproducible-path/savvy-2.1.0/src/sav/rehead.cpp -In file included from /build/reproducible-path/savvy-2.1.0/src/sav/concat.cpp:9: +In file included from /build/reproducible-path/savvy-2.1.0/src/sav/head.cpp:8: /build/reproducible-path/savvy-2.1.0/include/savvy/reader.hpp: In member function ‘std::vector > savvy::reader::subset_samples(const std::unordered_set >&)’: /build/reproducible-path/savvy-2.1.0/include/savvy/reader.hpp:292:78: warning: conversion from ‘long long unsigned int’ to ‘std::vector::value_type’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 292 | subset_map_.resize(ids_.size(), std::numeric_limits::max()); @@ -505,7 +537,7 @@ /build/reproducible-path/savvy-2.1.0/include/savvy/reader.hpp:292:78: warning: conversion from ‘long long unsigned int’ to ‘std::vector::value_type’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 292 | subset_map_.resize(ids_.size(), std::numeric_limits::max()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ -In file included from /build/reproducible-path/savvy-2.1.0/src/sav/rehead.cpp:9: +In file included from /build/reproducible-path/savvy-2.1.0/src/sav/concat.cpp:9: /build/reproducible-path/savvy-2.1.0/include/savvy/reader.hpp: In member function ‘std::vector > savvy::reader::subset_samples(const std::unordered_set >&)’: /build/reproducible-path/savvy-2.1.0/include/savvy/reader.hpp:292:78: warning: conversion from ‘long long unsigned int’ to ‘std::vector::value_type’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 292 | subset_map_.resize(ids_.size(), std::numeric_limits::max()); @@ -515,7 +547,11 @@ /build/reproducible-path/savvy-2.1.0/include/savvy/reader.hpp:292:78: warning: conversion from ‘long long unsigned int’ to ‘std::vector::value_type’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 292 | subset_map_.resize(ids_.size(), std::numeric_limits::max()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ -In file included from /build/reproducible-path/savvy-2.1.0/src/sav/head.cpp:8: +[ 58%] Building CXX object CMakeFiles/sav.dir/src/sav/merge.cpp.o +/usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -I/build/reproducible-path/savvy-2.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/savvy-2.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -MD -MT CMakeFiles/sav.dir/src/sav/merge.cpp.o -MF CMakeFiles/sav.dir/src/sav/merge.cpp.o.d -o CMakeFiles/sav.dir/src/sav/merge.cpp.o -c /build/reproducible-path/savvy-2.1.0/src/sav/merge.cpp +[ 66%] Building CXX object CMakeFiles/sav.dir/src/sav/rehead.cpp.o +/usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -I/build/reproducible-path/savvy-2.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/savvy-2.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -MD -MT CMakeFiles/sav.dir/src/sav/rehead.cpp.o -MF CMakeFiles/sav.dir/src/sav/rehead.cpp.o.d -o CMakeFiles/sav.dir/src/sav/rehead.cpp.o -c /build/reproducible-path/savvy-2.1.0/src/sav/rehead.cpp +In file included from /build/reproducible-path/savvy-2.1.0/src/sav/rehead.cpp:9: /build/reproducible-path/savvy-2.1.0/include/savvy/reader.hpp: In member function ‘std::vector > savvy::reader::subset_samples(const std::unordered_set >&)’: /build/reproducible-path/savvy-2.1.0/include/savvy/reader.hpp:292:78: warning: conversion from ‘long long unsigned int’ to ‘std::vector::value_type’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 292 | subset_map_.resize(ids_.size(), std::numeric_limits::max()); @@ -529,13 +565,13 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ [ 83%] Building CXX object CMakeFiles/sav.dir/src/sav/stat.cpp.o /usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -I/build/reproducible-path/savvy-2.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/savvy-2.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -MD -MT CMakeFiles/sav.dir/src/sav/stat.cpp.o -MF CMakeFiles/sav.dir/src/sav/stat.cpp.o.d -o CMakeFiles/sav.dir/src/sav/stat.cpp.o -c /build/reproducible-path/savvy-2.1.0/src/sav/stat.cpp +[ 91%] Building CXX object CMakeFiles/sav.dir/src/sav/utility.cpp.o +/usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -I/build/reproducible-path/savvy-2.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/savvy-2.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -MD -MT CMakeFiles/sav.dir/src/sav/utility.cpp.o -MF CMakeFiles/sav.dir/src/sav/utility.cpp.o.d -o CMakeFiles/sav.dir/src/sav/utility.cpp.o -c /build/reproducible-path/savvy-2.1.0/src/sav/utility.cpp In file included from /build/reproducible-path/savvy-2.1.0/src/sav/stat.cpp:11: /build/reproducible-path/savvy-2.1.0/include/savvy/reader.hpp: In member function ‘std::vector > savvy::reader::subset_samples(const std::unordered_set >&)’: /build/reproducible-path/savvy-2.1.0/include/savvy/reader.hpp:292:78: warning: conversion from ‘long long unsigned int’ to ‘std::vector::value_type’ {aka ‘unsigned int’} changes value from ‘18446744073709551615’ to ‘4294967295’ [-Woverflow] 292 | subset_map_.resize(ids_.size(), std::numeric_limits::max()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ -[ 91%] Building CXX object CMakeFiles/sav.dir/src/sav/utility.cpp.o -/usr/bin/c++ -DSAVVY_VERSION=\"2.1.0\" -I/build/reproducible-path/savvy-2.1.0/include -g -O2 -ffile-prefix-map=/build/reproducible-path/savvy-2.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -MD -MT CMakeFiles/sav.dir/src/sav/utility.cpp.o -MF CMakeFiles/sav.dir/src/sav/utility.cpp.o.d -o CMakeFiles/sav.dir/src/sav/utility.cpp.o -c /build/reproducible-path/savvy-2.1.0/src/sav/utility.cpp [100%] Linking CXX executable sav /usr/bin/cmake -E cmake_link_script CMakeFiles/sav.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/savvy-2.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -rdynamic CMakeFiles/sav.dir/src/sav/main.cpp.o CMakeFiles/sav.dir/src/sav/concat.cpp.o CMakeFiles/sav.dir/src/sav/export.cpp.o CMakeFiles/sav.dir/src/sav/head.cpp.o CMakeFiles/sav.dir/src/sav/import.cpp.o CMakeFiles/sav.dir/src/sav/index.cpp.o CMakeFiles/sav.dir/src/sav/merge.cpp.o CMakeFiles/sav.dir/src/sav/rehead.cpp.o CMakeFiles/sav.dir/src/sav/sort.cpp.o CMakeFiles/sav.dir/src/sav/stat.cpp.o CMakeFiles/sav.dir/src/sav/utility.cpp.o -o sav -lzstd -lz @@ -548,7 +584,7 @@ create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install - cd obj-i686-linux-gnu && make -j6 install DESTDIR=/build/reproducible-path/savvy-2.1.0/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-i686-linux-gnu && make -j5 install DESTDIR=/build/reproducible-path/savvy-2.1.0/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/savvy-2.1.0/obj-i686-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/savvy-2.1.0 -B/build/reproducible-path/savvy-2.1.0/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -559,36 +595,36 @@ /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy +-- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/sparse_vector.hpp +-- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/armadillo_vector.hpp +-- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/vcf_reader.hpp +-- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/allele_status.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/pbwt.hpp --- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/eigen3_vector.hpp --- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/typed_value.hpp --- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/sav_reader.hpp --- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/ublas_vector.hpp --- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/writer.hpp --- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/reader.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/s1r.hpp --- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/variant_iterator.hpp --- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/vcf_reader.hpp --- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/region.hpp --- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/portable_endian.hpp +-- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/sample_subset.hpp +-- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/reader.hpp +-- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/typed_value.hpp +-- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/savvy.hpp +-- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/m3vcf_reader.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/endianness.hpp +-- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/sav_reader.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/data_format.hpp +-- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/logging.hpp +-- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/csi.hpp +-- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/writer.hpp +-- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/varint.hpp +-- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/eigen3_vector.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/utility.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/variant_group_iterator.hpp --- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/m3vcf_reader.hpp --- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/sample_subset.hpp --- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/csi.hpp +-- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/variant_iterator.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/dictionary.hpp --- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/armadillo_vector.hpp --- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/file.hpp --- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/allele_status.hpp --- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/varint.hpp --- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/savvy.hpp --- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/compressed_vector.hpp --- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/sparse_vector.hpp --- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/logging.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/site_info.hpp +-- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/portable_endian.hpp +-- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/ublas_vector.hpp +-- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/compressed_vector.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/sav1.hpp +-- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/region.hpp +-- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/include/savvy/file.hpp -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/bin/sav -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/share/savvy/savvy-targets.cmake -- Installing: /build/reproducible-path/savvy-2.1.0/debian/tmp/usr/share/savvy/savvy-config.cmake @@ -611,9 +647,9 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'savvy-util' in '../savvy-util_2.1.0-3_i386.deb'. dpkg-deb: building package 'savvy-util-dbgsym' in '../savvy-util-dbgsym_2.1.0-3_i386.deb'. dpkg-deb: building package 'libsavvy-dev' in '../libsavvy-dev_2.1.0-3_all.deb'. +dpkg-deb: building package 'savvy-util' in '../savvy-util_2.1.0-3_i386.deb'. dpkg-genbuildinfo --build=binary -O../savvy_2.1.0-3_i386.buildinfo dpkg-genchanges --build=binary -O../savvy_2.1.0-3_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -621,12 +657,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/14077/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/14077/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1783 and its subdirectories -I: Current time: Mon Jan 5 08:30:54 -12 2026 -I: pbuilder-time-stamp: 1767645054 +I: removing directory /srv/workspace/pbuilder/14077 and its subdirectories +I: Current time: Wed Dec 4 04:10:21 +14 2024 +I: pbuilder-time-stamp: 1733235021