Diff of the two buildlogs: -- --- b1/build.log 2024-04-19 05:36:48.673116283 +0000 +++ b2/build.log 2024-04-19 05:38:10.821601002 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed May 21 23:59:01 -12 2025 -I: pbuilder-time-stamp: 1747915141 +I: Current time: Fri Apr 19 19:36:51 +14 2024 +I: pbuilder-time-stamp: 1713505011 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -35,54 +35,86 @@ dpkg-source: info: applying drop-git-in-gemspec.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/110842/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/6581/tmp/hooks/D01_modify_environment starting +debug: Running on ionos2-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 19 05:37 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/6581/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/6581/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=10 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='09df7fe6833747c5a4fc04c25a44a4c3' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='110842' - PS1='# ' - PS2='> ' + INVOCATION_ID=08efb3b3aeae4b73aba4e0a7514e7f0e + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=6581 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Pw0MReda/pbuilderrc_IXz2 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Pw0MReda/b1 --logfile b1/build.log ruby-crb-blast_0.6.9-5.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Pw0MReda/pbuilderrc_Gzpl --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Pw0MReda/b2 --logfile b2/build.log ruby-crb-blast_0.6.9-5.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux ionos6-i386 6.1.0-20-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-20-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 20 17:46 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/110842/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Apr 16 11:24 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/6581/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -283,7 +315,7 @@ Get: 145 http://deb.debian.org/debian trixie/main i386 ruby-shoulda all 4.0.0-3 [6352 B] Get: 146 http://deb.debian.org/debian trixie/main i386 ruby-threach all 0.2.0-2 [5320 B] Get: 147 http://deb.debian.org/debian trixie/main i386 ruby-trollop all 2.0-2.1 [17.0 kB] -Fetched 66.6 MB in 2s (27.7 MB/s) +Fetched 66.6 MB in 2s (36.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19874 files and directories currently installed.) @@ -767,8 +799,8 @@ Setting up tzdata (2024a-1) ... Current default time zone: 'Etc/UTC' -Local time is now: Thu May 22 11:59:25 UTC 2025. -Universal Time is now: Thu May 22 11:59:25 UTC 2025. +Local time is now: Fri Apr 19 05:37:26 UTC 2024. +Universal Time is now: Fri Apr 19 05:37:26 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... @@ -901,7 +933,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/ruby-crb-blast-0.6.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ruby-crb-blast_0.6.9-5_source.changes +I: user script /srv/workspace/pbuilder/6581/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/6581/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/ruby-crb-blast-0.6.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../ruby-crb-blast_0.6.9-5_source.changes dpkg-buildpackage: info: source package ruby-crb-blast dpkg-buildpackage: info: source version 0.6.9-5 dpkg-buildpackage: info: source distribution unstable @@ -980,38 +1016,38 @@ Loaded suite /usr/lib/ruby/gems/3.1.0/gems/rake-13.0.6/lib/rake/rake_test_loader Started Test2CRBBlast: - test: crb-blast should add secondary hits. : .: (0.414572) - test: crb-blast should break input file into no more pieces than there are sequences. : .: (0.391585) - test: crb-blast should break input file into pieces. :.: (0.395532) - test: crb-blast should find reciprocals. : .: (0.396892) - test: crb-blast should get non reciprocal hits. : .: (1.285138) - test: crb-blast should load output should check if the databases exist. : .: (0.410690) - test: crb-blast should run blast should check if the databases exist yet. : .: (0.410477) - test: crb-blast should setup2 should run ok. : .: (0.417193) + test: crb-blast should add secondary hits. : .: (0.746880) + test: crb-blast should break input file into no more pieces than there are sequences. : .: (0.673906) + test: crb-blast should break input file into pieces. :.: (0.717957) + test: crb-blast should find reciprocals. : .: (0.698705) + test: crb-blast should get non reciprocal hits. : .: (1.612925) + test: crb-blast should load output should check if the databases exist. : .: (1.059769) + test: crb-blast should run blast should check if the databases exist yet. : .: (0.672780) + test: crb-blast should setup2 should run ok. : .: (0.671081) Test3CRBBlast: - test: crb-blast should raise error when files don't exist. : .: (0.001227) - test: crb-blast should run. : .: (0.475644) - test: crb-blast should work for query sequences with pipes. : .: (0.353421) + test: crb-blast should raise error when files don't exist. : .: (0.001671) + test: crb-blast should run. : .: (0.821500) + test: crb-blast should work for query sequences with pipes. : .: (0.590172) TestBinary: - test: crb-blast should run binary. : .: (0.145952) + test: crb-blast should run binary. : .: (0.201022) TestCRBBlast: - test: crb-blast should check if contig has reciprocal hit. : .: (0.442318) - test: crb-blast should determine that the target is a protein sequence. : .: (0.527792) - test: crb-blast should find reciprocals. : .: (0.464003) - test: crb-blast should get number of reciprocals. : .: (0.446050) - test: crb-blast should get query results. : .: (0.442470) - test: crb-blast should load outputs. : .: (0.438495) - test: crb-blast should not find fake scaffold name. : .: (0.439179) - test: crb-blast should output all reciprocal hits. : .: (0.434403) - test: crb-blast should run blast. : .: (0.437330) - test: crb-blast should setup should run ok. : .: (0.437694) + test: crb-blast should check if contig has reciprocal hit. : .: (0.858851) + test: crb-blast should determine that the target is a protein sequence. : .: (1.568378) + test: crb-blast should find reciprocals. : .: (0.875367) + test: crb-blast should get number of reciprocals. : .: (0.793012) + test: crb-blast should get query results. : .: (0.796744) + test: crb-blast should load outputs. : .: (0.815804) + test: crb-blast should not find fake scaffold name. : .: (0.921791) + test: crb-blast should output all reciprocal hits. : .: (1.841022) + test: crb-blast should run blast. : .: (0.849939) + test: crb-blast should setup should run ok. : .: (1.006088) -Finished in 9.611258962 seconds. +Finished in 18.801938299 seconds. ------------------------------------------------------------------------------- 22 tests, 42 assertions, 0 failures, 0 errors, 0 pendings, 0 omissions, 0 notifications 100% passed ------------------------------------------------------------------------------- -2.29 tests/s, 4.37 assertions/s +1.17 tests/s, 2.23 assertions/s ┌──────────────────────────────────────────────────────────────────────────────┐ │ dh_ruby --install finished │ @@ -1042,12 +1078,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/6581/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/6581/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/110842 and its subdirectories -I: Current time: Wed May 21 23:59:47 -12 2025 -I: pbuilder-time-stamp: 1747915187 +I: removing directory /srv/workspace/pbuilder/6581 and its subdirectories +I: Current time: Fri Apr 19 19:38:10 +14 2024 +I: pbuilder-time-stamp: 1713505090