Diff of the two buildlogs: -- --- b1/build.log 2025-01-11 22:12:08.002823197 +0000 +++ b2/build.log 2025-01-11 21:53:49.812982997 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Jan 11 09:54:17 -12 2025 -I: pbuilder-time-stamp: 1736632457 +I: Current time: Sat Feb 14 18:15:55 +14 2026 +I: pbuilder-time-stamp: 1771042555 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -23,54 +23,86 @@ dpkg-source: info: unpacking r-cran-poissonbinomial_1.2.7-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/48639/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/45795/tmp/hooks/D01_modify_environment starting +debug: Running on ionos6-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Feb 14 04:16 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/45795/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/45795/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=21 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='f9200522c87b480e9fc304119a61c0ec' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='48639' - PS1='# ' - PS2='> ' + INVOCATION_ID=0985465239634dfd99610f85b8025075 + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=45795 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.jN2qsvP6/pbuilderrc_f9WH --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.jN2qsvP6/b1 --logfile b1/build.log r-cran-poissonbinomial_1.2.7-1.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.jN2qsvP6/pbuilderrc_iA90 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.jN2qsvP6/b2 --logfile b2/build.log r-cran-poissonbinomial_1.2.7-1.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos2-i386 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/48639/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/45795/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -138,7 +170,7 @@ Get: 22 http://deb.debian.org/debian trixie/main i386 autopoint all 0.22.5-4 [723 kB] Get: 23 http://deb.debian.org/debian trixie/main i386 dctrl-tools i386 2.24-3 [105 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.23 [90.6 kB] -Get: 25 http://deb.debian.org/debian trixie/main i386 libtool all 2.4.7-8 [517 kB] +Get: 25 http://deb.debian.org/debian trixie/main i386 libtool all 2.5.4-2 [539 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] @@ -317,7 +349,7 @@ Get: 201 http://deb.debian.org/debian trixie/main i386 littler all 0.3.20-2 [16.0 kB] Get: 202 http://deb.debian.org/debian trixie/main i386 r-cran-pkgkitten all 0.2.4-1 [29.1 kB] Get: 203 http://deb.debian.org/debian trixie/main i386 r-cran-rcpp i386 1.0.13-1-1 [2063 kB] -Fetched 117 MB in 14s (8309 kB/s) +Fetched 117 MB in 1s (98.5 MB/s) Preconfiguring packages ... Selecting previously unselected package tzdata. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19839 files and directories currently installed.) @@ -394,8 +426,8 @@ Preparing to unpack .../023-libdebhelper-perl_13.23_all.deb ... Unpacking libdebhelper-perl (13.23) ... Selecting previously unselected package libtool. -Preparing to unpack .../024-libtool_2.4.7-8_all.deb ... -Unpacking libtool (2.4.7-8) ... +Preparing to unpack .../024-libtool_2.5.4-2_all.deb ... +Unpacking libtool (2.5.4-2) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../025-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... @@ -985,8 +1017,8 @@ Setting up tzdata (2024b-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Sat Jan 11 21:59:09 UTC 2025. -Universal Time is now: Sat Jan 11 21:59:09 UTC 2025. +Local time is now: Sat Feb 14 04:16:19 UTC 2026. +Universal Time is now: Sat Feb 14 04:16:19 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up zip (3.0-14) ... @@ -1070,7 +1102,7 @@ Setting up gettext (0.22.5-4) ... Setting up libpcre2-dev:i386 (10.44-5) ... Setting up libxrender1:i386 (1:0.9.10-1.1+b3) ... -Setting up libtool (2.4.7-8) ... +Setting up libtool (2.5.4-2) ... Setting up libfftw3-bin (3.3.10-2+b1) ... Setting up fontconfig-config (2.15.0-1.1+b1) ... Setting up libpng-dev:i386 (1.6.44-3) ... @@ -1161,7 +1193,7 @@ Setting up libnamespace-clean-perl (0.27-2) ... Setting up libwww-curl-simple-perl (0.100191-3) ... Setting up dh-r (20241218) ... -Processing triggers for libc-bin (2.40-4) ... +Processing triggers for libc-bin (2.40-5) ... Processing triggers for ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. @@ -1174,18 +1206,106 @@ Initializing package states... Writing extended state information... Building tag database... -Aptitude couldn't satisfy the build dependencies -E: pbuilder-satisfydepends failed. + -> Finished parsing the build-deps +I: Building the package +I: user script /srv/workspace/pbuilder/45795/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/45795/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/r-cran-poissonbinomial-1.2.7/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../r-cran-poissonbinomial_1.2.7-1_source.changes +dpkg-buildpackage: info: source package r-cran-poissonbinomial +dpkg-buildpackage: info: source version 1.2.7-1 +dpkg-buildpackage: info: source distribution unstable +dpkg-buildpackage: info: source changed by Charles Plessy + dpkg-source --before-build . +dpkg-buildpackage: info: host architecture i386 + debian/rules clean +dh clean --buildsystem R + dh_auto_clean -O--buildsystem=R + dh_autoreconf_clean -O--buildsystem=R + dh_clean -O--buildsystem=R + debian/rules binary +dh binary --buildsystem R + dh_update_autotools_config -O--buildsystem=R + dh_autoreconf -O--buildsystem=R + dh_auto_configure -O--buildsystem=R + dh_auto_build -O--buildsystem=R + dh_auto_test -O--buildsystem=R + create-stamp debian/debhelper-build-stamp + dh_testroot -O--buildsystem=R + dh_prep -O--buildsystem=R + dh_auto_install --destdir=debian/r-cran-poissonbinomial/ -O--buildsystem=R +I: R Package: PoissonBinomial Version: 1.2.7 +I: Building using R version 4.4.2-1 +I: R API version: r-api-4.0 +I: Using built-time from d/changelog: Thu, 10 Oct 2024 11:30:43 +0900 + mkdir -p /build/reproducible-path/r-cran-poissonbinomial-1.2.7/debian/r-cran-poissonbinomial/usr/lib/R/site-library + R CMD INSTALL -l /build/reproducible-path/r-cran-poissonbinomial-1.2.7/debian/r-cran-poissonbinomial/usr/lib/R/site-library --clean . "--built-timestamp='Thu, 10 Oct 2024 11:30:43 +0900'" +* installing *source* package 'PoissonBinomial' ... +** package 'PoissonBinomial' successfully unpacked and MD5 sums checked +** using staged installation +** libs +using C++ compiler: 'g++ (Debian 14.2.0-12) 14.2.0' +make[1]: Entering directory '/build/reproducible-path/r-cran-poissonbinomial-1.2.7/src' +g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I../inst/include -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c PoissonBinomial.cpp -o PoissonBinomial.o +g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I../inst/include -I'/usr/lib/R/site-library/Rcpp/include' -fpic -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c RcppExports.cpp -o RcppExports.o +g++ -std=gnu++17 -shared -L/usr/lib/R/lib -Wl,-z,relro -o PoissonBinomial.so PoissonBinomial.o RcppExports.o -lfftw3 -L/usr/lib/R/lib -lR +make[1]: Leaving directory '/build/reproducible-path/r-cran-poissonbinomial-1.2.7/src' +make[1]: Entering directory '/build/reproducible-path/r-cran-poissonbinomial-1.2.7/src' +make[1]: Leaving directory '/build/reproducible-path/r-cran-poissonbinomial-1.2.7/src' +installing to /build/reproducible-path/r-cran-poissonbinomial-1.2.7/debian/r-cran-poissonbinomial/usr/lib/R/site-library/00LOCK-r-cran-poissonbinomial-1.2.7/00new/PoissonBinomial/libs +** R +** inst +** byte-compile and prepare package for lazy loading +** help +*** installing help indices +** building package indices +** installing vignettes +** testing if installed package can be loaded from temporary location +** checking absolute paths in shared objects and dynamic libraries +** testing if installed package can be loaded from final location +** testing if installed package keeps a record of temporary installation path +* DONE (PoissonBinomial) +I: Using r-cran-knitr for Suggests:knitr +I: Using r-cran-rmarkdown for Suggests:rmarkdown +I: Using r-cran-microbenchmark for Suggests:microbenchmark +I: Using r-cran-rcpp for Imports:Rcpp (>= 1.0.11) +I: Using r-cran-rcpp for LinkingTo:Rcpp +I: Use r-cran-poissonbinomial as Debian binary package for variables substitution + dh_installdocs -O--buildsystem=R + dh_installchangelogs -O--buildsystem=R + dh_installsystemduser -O--buildsystem=R + dh_perl -O--buildsystem=R + dh_link -O--buildsystem=R + dh_strip_nondeterminism -O--buildsystem=R + dh_compress -O--buildsystem=R + dh_fixperms -O--buildsystem=R + dh_missing -O--buildsystem=R + dh_dwz -a -O--buildsystem=R + dh_strip -a -O--buildsystem=R + dh_makeshlibs -a -O--buildsystem=R + dh_shlibdeps -a -O--buildsystem=R + dh_installdeb -O--buildsystem=R + dh_gencontrol -O--buildsystem=R + dh_md5sums -O--buildsystem=R + dh_builddeb -O--buildsystem=R +dpkg-deb: building package 'r-cran-poissonbinomial' in '../r-cran-poissonbinomial_1.2.7-1_i386.deb'. +dpkg-deb: building package 'r-cran-poissonbinomial-dbgsym' in '../r-cran-poissonbinomial-dbgsym_1.2.7-1_i386.deb'. + dpkg-genbuildinfo --build=binary -O../r-cran-poissonbinomial_1.2.7-1_i386.buildinfo + dpkg-genchanges --build=binary -O../r-cran-poissonbinomial_1.2.7-1_i386.changes +dpkg-genchanges: info: binary-only upload (no source code included) + dpkg-source --after-build . +dpkg-buildpackage: info: binary-only upload (no source included) +dpkg-genchanges: info: including full source code in upload +I: copying local configuration +I: user script /srv/workspace/pbuilder/45795/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/45795/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem -Failed to get properties: Transport endpoint is not connected -Failed to get properties: Transport endpoint is not connected -W: Stray processes left from build: -Failed to get properties: Transport endpoint is not connected -Failed to stop system-pbuilder-build-r\x2dcran\x2dpoissonbinomial_1.2.7\x2d1-48639.slice: Transport endpoint is not connected -See system logs and 'systemctl status system-pbuilder-build-r\x2dcran\x2dpoissonbinomial_1.2.7\x2d1-48639.slice' for details. I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/48639 and its subdirectories +I: removing directory /srv/workspace/pbuilder/45795 and its subdirectories +I: Current time: Sat Feb 14 18:16:48 +14 2026 +I: pbuilder-time-stamp: 1771042608