Diff of the two buildlogs: -- --- b1/build.log 2024-04-11 17:35:09.276736682 +0000 +++ b2/build.log 2024-04-11 17:36:34.805091049 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Apr 11 05:32:47 -12 2024 -I: pbuilder-time-stamp: 1712856767 +I: Current time: Thu May 15 13:58:06 +14 2025 +I: pbuilder-time-stamp: 1747267086 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -30,54 +30,86 @@ dpkg-source: info: applying py3_boost.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/56917/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/31768/tmp/hooks/D01_modify_environment starting +debug: Running on ionos16-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 14 23:58 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/31768/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/31768/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=21 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='f9ae5f5a4cd647d0b7951a92f9cfd9bc' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='56917' - PS1='# ' - PS2='> ' + INVOCATION_ID=6ee91604621c456f9d6989043228fb15 + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=31768 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.K4GVNeen/pbuilderrc_9TRw --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.K4GVNeen/b1 --logfile b1/build.log python-freecontact_1.1-6.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://78.137.99.97:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.K4GVNeen/pbuilderrc_Ryqt --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.K4GVNeen/b2 --logfile b2/build.log python-freecontact_1.1-6.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://85.184.249.68:3128 I: uname -a - Linux ionos12-i386 6.1.0-18-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.76-1 (2024-02-01) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-18-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.76-1 (2024-02-01) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Apr 10 11:24 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/56917/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 12 17:46 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/31768/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -198,7 +230,7 @@ Get: 75 http://deb.debian.org/debian trixie/main i386 python3-all i386 3.11.6-1 [1060 B] Get: 76 http://deb.debian.org/debian trixie/main i386 python3.12-dev i386 3.12.2-1 [507 kB] Get: 77 http://deb.debian.org/debian trixie/main i386 python3-all-dev i386 3.11.6-1 [1080 B] -Fetched 63.2 MB in 1s (59.3 MB/s) +Fetched 63.2 MB in 1s (66.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19874 files and directories currently installed.) @@ -455,8 +487,8 @@ Setting up tzdata (2024a-1) ... Current default time zone: 'Etc/UTC' -Local time is now: Thu Apr 11 17:33:24 UTC 2024. -Universal Time is now: Thu Apr 11 17:33:24 UTC 2024. +Local time is now: Wed May 14 23:58:33 UTC 2025. +Universal Time is now: Wed May 14 23:58:33 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... @@ -532,7 +564,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/python-freecontact-1.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-freecontact_1.1-6_source.changes +I: user script /srv/workspace/pbuilder/31768/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/31768/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/python-freecontact-1.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-freecontact_1.1-6_source.changes dpkg-buildpackage: info: source package python-freecontact dpkg-buildpackage: info: source version 1.1-6 dpkg-buildpackage: info: source distribution unstable @@ -592,22 +628,22 @@ ..will use 1 OMP threads total weight (variation) of alignment = 620.777515304633 -seq weight loop for 1000 seqs took 0.08348 secs +seq weight loop for 1000 seqs took 0.048121 secs will use 1 OMP threads calculated column aa frequencies, gap cols = 4 -calculated pair frequency table in 0.174172 secs +calculated pair frequency table in 0.072819 secs collected apc_mean[MI] = 0.174031486973761 aa freq sum (cell) = 0.999997158936355, pairfreq sum (cell) = 0.999994420985606 formed covariance matrix (122/126,4) -LU factorization took 6.66812 secs, inverted matrix (incl LUf) in 23.6495 secs +LU factorization took 3.47214 secs, inverted matrix (incl LUf) in 10.6685 secs density of inverse covariance matrix = 1 (cksum 346842.2) went back to gapped (126) wwi matrix collected apc_mean[l1norm] = 117.987034737713 collected apc_mean[fro] = 3.35437752887409 -all done in 24.3962 secs +all done in 10.9947 secs . ---------------------------------------------------------------------- -Ran 3 tests in 24.408s +Ran 3 tests in 11.002s OK  @@ -616,27 +652,27 @@ ..will use 1 OMP threads total weight (variation) of alignment = 620.777515304633 -seq weight loop for 1000 seqs took 0.08355 secs +seq weight loop for 1000 seqs took 0.048186 secs will use 1 OMP threads calculated column aa frequencies, gap cols = 4 -calculated pair frequency table in 0.186078 secs +calculated pair frequency table in 0.070642 secs collected apc_mean[MI] = 0.174031486973761 aa freq sum (cell) = 0.999997158936355, pairfreq sum (cell) = 0.999994420985606 formed covariance matrix (122/126,4) -LU factorization took 6.79077 secs, inverted matrix (incl LUf) in 23.587 secs +LU factorization took 3.45811 secs, inverted matrix (incl LUf) in 10.6126 secs density of inverse covariance matrix = 1 (cksum 346842.2) went back to gapped (126) wwi matrix collected apc_mean[l1norm] = 117.987034737713 collected apc_mean[fro] = 3.35437752887409 -all done in 24.3762 secs +all done in 10.9336 secs . ---------------------------------------------------------------------- -Ran 3 tests in 24.388s +Ran 3 tests in 10.942s OK  !!!Skipping the rest of the tests for python3.11, need to be fixed! - rm -fr -- /tmp/dh-xdg-rundir-GY8cJr0z + rm -fr -- /tmp/dh-xdg-rundir-ajZUOTxR make[1]: Leaving directory '/build/reproducible-path/python-freecontact-1.1' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir @@ -696,7 +732,7 @@ D: dh_python3 fs:50: moving files from debian/python3-freecontact/usr/lib/python3.12/dist-packages to debian/python3-freecontact/usr/lib/python3/dist-packages/ D: dh_python3 fs:335: package python3-freecontact details = {'requires.txt': set(), 'egg-info': {'debian/python3-freecontact/usr/lib/python3/dist-packages/python_freecontact-1.1.egg-info/PKG-INFO'}, 'dist-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': False, 'ext_vers': {Version('3.11'), Version('3.12')}, 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package python3-freecontact -D: dh_python3 depends:253: D={'python3 (>= 3.11~)', 'python3 (<< 3.13)'}; R=[]; S=[]; E=[], B=[]; RT=[] +D: dh_python3 depends:253: D={'python3 (<< 3.13)', 'python3 (>= 3.11~)'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir dh_perl -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir dh_link -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir @@ -719,16 +755,16 @@ objcopy --compress-debug-sections debian/python3-freecontact/usr/lib/debug/.dwz/i386-linux-gnu/python3-freecontact.debug chmod 0644 -- debian/python3-freecontact/usr/lib/debug/.dwz/i386-linux-gnu/python3-freecontact.debug dh_strip -a -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir - install -m0755 -d debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/25 - objcopy --only-keep-debug --compress-debug-sections debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-312-i386-linux-gnu.so debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/25/7595ef89557e4b55e44b0b8702f8ba8a2f7fc4.debug - chmod 0644 -- debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/25/7595ef89557e4b55e44b0b8702f8ba8a2f7fc4.debug - strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-312-i386-linux-gnu.so - objcopy --add-gnu-debuglink debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/25/7595ef89557e4b55e44b0b8702f8ba8a2f7fc4.debug debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-312-i386-linux-gnu.so install -m0755 -d debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/e9 objcopy --only-keep-debug --compress-debug-sections debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-311-i386-linux-gnu.so debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/e9/5d9902c8b8b05023675d61f83c13ee17d0efc4.debug chmod 0644 -- debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/e9/5d9902c8b8b05023675d61f83c13ee17d0efc4.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-311-i386-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/e9/5d9902c8b8b05023675d61f83c13ee17d0efc4.debug debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-311-i386-linux-gnu.so + install -m0755 -d debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/25 + objcopy --only-keep-debug --compress-debug-sections debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-312-i386-linux-gnu.so debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/25/7595ef89557e4b55e44b0b8702f8ba8a2f7fc4.debug + chmod 0644 -- debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/25/7595ef89557e4b55e44b0b8702f8ba8a2f7fc4.debug + strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-312-i386-linux-gnu.so + objcopy --add-gnu-debuglink debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/25/7595ef89557e4b55e44b0b8702f8ba8a2f7fc4.debug debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-312-i386-linux-gnu.so install -m0755 -d debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/python3-freecontact/usr/lib/debug/.dwz/i386-linux-gnu debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/python3-freecontact/usr/lib/debug/.dwz @@ -740,7 +776,7 @@ rm -f debian/python3-freecontact/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir install -m0755 -d debian/python3-freecontact/DEBIAN - dpkg-shlibdeps -Tdebian/python3-freecontact.substvars debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-312-i386-linux-gnu.so debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-311-i386-linux-gnu.so + dpkg-shlibdeps -Tdebian/python3-freecontact.substvars debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-311-i386-linux-gnu.so debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-312-i386-linux-gnu.so dh_installdeb -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir install -m0755 -d debian/python3-freecontact/DEBIAN dh_gencontrol -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir @@ -762,8 +798,8 @@ dh_builddeb -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir dpkg-deb --root-owner-group --build debian/python3-freecontact .. dpkg-deb --root-owner-group --build debian/.debhelper/python3-freecontact/dbgsym-root .. -dpkg-deb: building package 'python3-freecontact' in '../python3-freecontact_1.1-6_i386.deb'. dpkg-deb: building package 'python3-freecontact-dbgsym' in '../python3-freecontact-dbgsym_1.1-6_i386.deb'. +dpkg-deb: building package 'python3-freecontact' in '../python3-freecontact_1.1-6_i386.deb'. dpkg-genbuildinfo --build=binary -O../python-freecontact_1.1-6_i386.buildinfo dpkg-genchanges --build=binary -O../python-freecontact_1.1-6_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -772,12 +808,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/31768/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/31768/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/56917 and its subdirectories -I: Current time: Thu Apr 11 05:35:08 -12 2024 -I: pbuilder-time-stamp: 1712856908 +I: removing directory /srv/workspace/pbuilder/31768 and its subdirectories +I: Current time: Thu May 15 13:59:27 +14 2025 +I: pbuilder-time-stamp: 1747267167