Diff of the two buildlogs: -- --- b1/build.log 2024-05-08 16:22:35.182560902 +0000 +++ b2/build.log 2024-05-08 16:26:57.483370388 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Jun 10 10:43:06 -12 2025 -I: pbuilder-time-stamp: 1749595386 +I: Current time: Thu May 9 06:22:38 +14 2024 +I: pbuilder-time-stamp: 1715185358 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -30,54 +30,86 @@ dpkg-source: info: applying python2to3_for_executables.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/117096/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/32837/tmp/hooks/D01_modify_environment starting +debug: Running on ionos2-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 8 16:22 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/32837/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/32837/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=10 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='01f56bb4299f4af88b719b7a40f47d9f' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='117096' - PS1='# ' - PS2='> ' + INVOCATION_ID=b7a972c6d73c423fad2105d6551bf2bc + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=32837 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.LRUAPZC7/pbuilderrc_DnSB --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.LRUAPZC7/b1 --logfile b1/build.log python-deeptools_3.5.4+dfsg-1.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.LRUAPZC7/pbuilderrc_a59y --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.LRUAPZC7/b2 --logfile b2/build.log python-deeptools_3.5.4+dfsg-1.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos6-i386 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Jun 10 17:52 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/117096/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 7 11:24 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/32837/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -346,7 +378,7 @@ Get: 203 http://deb.debian.org/debian trixie/main i386 python3-pybigwig i386 0.3.22+dfsg-1+b2 [47.4 kB] Get: 204 http://deb.debian.org/debian trixie/main i386 python3-pysam i386 0.22.0+ds-1+b2 [4843 kB] Get: 205 http://deb.debian.org/debian trixie/main i386 python3-pytest all 7.4.4-3 [239 kB] -Fetched 130 MB in 1s (87.8 MB/s) +Fetched 130 MB in 2s (68.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19683 files and directories currently installed.) @@ -1011,8 +1043,8 @@ Setting up tzdata (2024a-3) ... Current default time zone: 'Etc/UTC' -Local time is now: Tue Jun 10 22:43:39 UTC 2025. -Universal Time is now: Tue Jun 10 22:43:39 UTC 2025. +Local time is now: Wed May 8 16:23:17 UTC 2024. +Universal Time is now: Wed May 8 16:23:17 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... @@ -1209,7 +1241,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/python-deeptools-3.5.4+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-deeptools_3.5.4+dfsg-1_source.changes +I: user script /srv/workspace/pbuilder/32837/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/32837/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/python-deeptools-3.5.4+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-deeptools_3.5.4+dfsg-1_source.changes dpkg-buildpackage: info: source package python-deeptools dpkg-buildpackage: info: source version 3.5.4+dfsg-1 dpkg-buildpackage: info: source distribution unstable @@ -1255,49 +1291,49 @@ creating build creating build/lib creating build/lib/deeptools -copying deeptools/heatmapper_utilities.py -> build/lib/deeptools +copying deeptools/writeBedGraph.py -> build/lib/deeptools copying deeptools/plotEnrichment.py -> build/lib/deeptools -copying deeptools/writeBedGraph_bam_and_bw.py -> build/lib/deeptools -copying deeptools/SES_scaleFactor.py -> build/lib/deeptools -copying deeptools/plotCoverage.py -> build/lib/deeptools -copying deeptools/deepBlue.py -> build/lib/deeptools -copying deeptools/bamPEFragmentSize.py -> build/lib/deeptools -copying deeptools/getScorePerBigWigBin.py -> build/lib/deeptools -copying deeptools/getScaleFactor.py -> build/lib/deeptools -copying deeptools/sumCoveragePerBin.py -> build/lib/deeptools -copying deeptools/cm.py -> build/lib/deeptools -copying deeptools/correlation.py -> build/lib/deeptools -copying deeptools/computeMatrix.py -> build/lib/deeptools copying deeptools/estimateReadFiltering.py -> build/lib/deeptools -copying deeptools/multiBigwigSummary.py -> build/lib/deeptools -copying deeptools/writeBedGraph.py -> build/lib/deeptools -copying deeptools/correctGCBias.py -> build/lib/deeptools -copying deeptools/heatmapper.py -> build/lib/deeptools copying deeptools/correlation_heatmap.py -> build/lib/deeptools -copying deeptools/misc.py -> build/lib/deeptools -copying deeptools/bigwigCompare.py -> build/lib/deeptools -copying deeptools/computeMatrixOperations.py -> build/lib/deeptools -copying deeptools/plotPCA.py -> build/lib/deeptools -copying deeptools/mapReduce.py -> build/lib/deeptools -copying deeptools/multiBamSummary.py -> build/lib/deeptools copying deeptools/bamHandler.py -> build/lib/deeptools -copying deeptools/alignmentSieve.py -> build/lib/deeptools copying deeptools/countReadsPerBin.py -> build/lib/deeptools -copying deeptools/parserCommon.py -> build/lib/deeptools -copying deeptools/estimateScaleFactor.py -> build/lib/deeptools -copying deeptools/bamCoverage.py -> build/lib/deeptools +copying deeptools/computeMatrix.py -> build/lib/deeptools +copying deeptools/getFragmentAndReadSize.py -> build/lib/deeptools +copying deeptools/SES_scaleFactor.py -> build/lib/deeptools +copying deeptools/heatmapper.py -> build/lib/deeptools +copying deeptools/bamPEFragmentSize.py -> build/lib/deeptools +copying deeptools/bigwigCompare.py -> build/lib/deeptools +copying deeptools/plotPCA.py -> build/lib/deeptools +copying deeptools/correlation.py -> build/lib/deeptools +copying deeptools/heatmapper_utilities.py -> build/lib/deeptools +copying deeptools/getScorePerBigWigBin.py -> build/lib/deeptools +copying deeptools/cm.py -> build/lib/deeptools copying deeptools/computeGCBias.py -> build/lib/deeptools -copying deeptools/__init__.py -> build/lib/deeptools -copying deeptools/utilities.py -> build/lib/deeptools -copying deeptools/getRatio.py -> build/lib/deeptools copying deeptools/bigwigAverage.py -> build/lib/deeptools -copying deeptools/getFragmentAndReadSize.py -> build/lib/deeptools -copying deeptools/plotProfile.py -> build/lib/deeptools +copying deeptools/estimateScaleFactor.py -> build/lib/deeptools copying deeptools/deeptools_list_tools.py -> build/lib/deeptools +copying deeptools/plotProfile.py -> build/lib/deeptools copying deeptools/plotFingerprint.py -> build/lib/deeptools -copying deeptools/plotCorrelation.py -> build/lib/deeptools -copying deeptools/bamCompare.py -> build/lib/deeptools +copying deeptools/multiBamSummary.py -> build/lib/deeptools +copying deeptools/utilities.py -> build/lib/deeptools +copying deeptools/plotCoverage.py -> build/lib/deeptools +copying deeptools/getScaleFactor.py -> build/lib/deeptools copying deeptools/plotHeatmap.py -> build/lib/deeptools +copying deeptools/computeMatrixOperations.py -> build/lib/deeptools +copying deeptools/bamCoverage.py -> build/lib/deeptools +copying deeptools/bamCompare.py -> build/lib/deeptools +copying deeptools/misc.py -> build/lib/deeptools +copying deeptools/__init__.py -> build/lib/deeptools +copying deeptools/sumCoveragePerBin.py -> build/lib/deeptools +copying deeptools/plotCorrelation.py -> build/lib/deeptools +copying deeptools/parserCommon.py -> build/lib/deeptools +copying deeptools/deepBlue.py -> build/lib/deeptools +copying deeptools/correctGCBias.py -> build/lib/deeptools +copying deeptools/getRatio.py -> build/lib/deeptools +copying deeptools/alignmentSieve.py -> build/lib/deeptools +copying deeptools/multiBigwigSummary.py -> build/lib/deeptools +copying deeptools/mapReduce.py -> build/lib/deeptools +copying deeptools/writeBedGraph_bam_and_bw.py -> build/lib/deeptools running egg_info creating deepTools.egg-info writing deepTools.egg-info/PKG-INFO @@ -1320,54 +1356,54 @@ creating build/bdist.linux-i686 creating build/bdist.linux-i686/wheel creating build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/heatmapper_utilities.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/writeBedGraph.py -> build/bdist.linux-i686/wheel/deeptools copying build/lib/deeptools/plotEnrichment.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/writeBedGraph_bam_and_bw.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/SES_scaleFactor.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/plotCoverage.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/deepBlue.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/bamPEFragmentSize.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/getScorePerBigWigBin.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/getScaleFactor.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/sumCoveragePerBin.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/cm.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/correlation.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/computeMatrix.py -> build/bdist.linux-i686/wheel/deeptools copying build/lib/deeptools/estimateReadFiltering.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/multiBigwigSummary.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/writeBedGraph.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/correctGCBias.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/heatmapper.py -> build/bdist.linux-i686/wheel/deeptools copying build/lib/deeptools/correlation_heatmap.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/misc.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/bigwigCompare.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/computeMatrixOperations.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/plotPCA.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/mapReduce.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/multiBamSummary.py -> build/bdist.linux-i686/wheel/deeptools copying build/lib/deeptools/bamHandler.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/alignmentSieve.py -> build/bdist.linux-i686/wheel/deeptools copying build/lib/deeptools/countReadsPerBin.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/parserCommon.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/estimateScaleFactor.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/bamCoverage.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/computeMatrix.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/getFragmentAndReadSize.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/SES_scaleFactor.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/heatmapper.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/bamPEFragmentSize.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/bigwigCompare.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/plotPCA.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/correlation.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/heatmapper_utilities.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/getScorePerBigWigBin.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/cm.py -> build/bdist.linux-i686/wheel/deeptools copying build/lib/deeptools/computeGCBias.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/__init__.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/utilities.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/getRatio.py -> build/bdist.linux-i686/wheel/deeptools copying build/lib/deeptools/bigwigAverage.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/getFragmentAndReadSize.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/plotProfile.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/estimateScaleFactor.py -> build/bdist.linux-i686/wheel/deeptools copying build/lib/deeptools/deeptools_list_tools.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/plotProfile.py -> build/bdist.linux-i686/wheel/deeptools copying build/lib/deeptools/plotFingerprint.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/plotCorrelation.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/bamCompare.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/multiBamSummary.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/utilities.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/plotCoverage.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/getScaleFactor.py -> build/bdist.linux-i686/wheel/deeptools copying build/lib/deeptools/plotHeatmap.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/computeMatrixOperations.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/bamCoverage.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/bamCompare.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/misc.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/__init__.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/sumCoveragePerBin.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/plotCorrelation.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/parserCommon.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/deepBlue.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/correctGCBias.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/getRatio.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/alignmentSieve.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/multiBigwigSummary.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/mapReduce.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/writeBedGraph_bam_and_bw.py -> build/bdist.linux-i686/wheel/deeptools running install_egg_info Copying deepTools.egg-info to build/bdist.linux-i686/wheel/deepTools-3.5.4.egg-info running install_scripts creating build/bdist.linux-i686/wheel/deepTools-3.5.4.dist-info/WHEEL -creating '/build/reproducible-path/python-deeptools-3.5.4+dfsg/.pybuild/cpython3_3.12_deeptools/.tmp-k7yyopgj/deepTools-3.5.4-py3-none-any.whl' and adding 'build/bdist.linux-i686/wheel' to it +creating '/build/reproducible-path/python-deeptools-3.5.4+dfsg/.pybuild/cpython3_3.12_deeptools/.tmp-iynv5mx3/deepTools-3.5.4-py3-none-any.whl' and adding 'build/bdist.linux-i686/wheel' to it adding 'deeptools/SES_scaleFactor.py' adding 'deeptools/__init__.py' adding 'deeptools/alignmentSieve.py' @@ -1446,54 +1482,54 @@ running install_lib creating build/bdist.linux-i686/wheel creating build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/heatmapper_utilities.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/writeBedGraph.py -> build/bdist.linux-i686/wheel/deeptools copying build/lib/deeptools/plotEnrichment.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/writeBedGraph_bam_and_bw.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/SES_scaleFactor.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/plotCoverage.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/deepBlue.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/bamPEFragmentSize.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/getScorePerBigWigBin.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/getScaleFactor.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/sumCoveragePerBin.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/cm.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/correlation.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/computeMatrix.py -> build/bdist.linux-i686/wheel/deeptools copying build/lib/deeptools/estimateReadFiltering.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/multiBigwigSummary.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/writeBedGraph.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/correctGCBias.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/heatmapper.py -> build/bdist.linux-i686/wheel/deeptools copying build/lib/deeptools/correlation_heatmap.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/misc.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/bigwigCompare.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/computeMatrixOperations.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/plotPCA.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/mapReduce.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/multiBamSummary.py -> build/bdist.linux-i686/wheel/deeptools copying build/lib/deeptools/bamHandler.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/alignmentSieve.py -> build/bdist.linux-i686/wheel/deeptools copying build/lib/deeptools/countReadsPerBin.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/parserCommon.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/estimateScaleFactor.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/bamCoverage.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/computeMatrix.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/getFragmentAndReadSize.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/SES_scaleFactor.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/heatmapper.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/bamPEFragmentSize.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/bigwigCompare.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/plotPCA.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/correlation.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/heatmapper_utilities.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/getScorePerBigWigBin.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/cm.py -> build/bdist.linux-i686/wheel/deeptools copying build/lib/deeptools/computeGCBias.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/__init__.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/utilities.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/getRatio.py -> build/bdist.linux-i686/wheel/deeptools copying build/lib/deeptools/bigwigAverage.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/getFragmentAndReadSize.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/plotProfile.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/estimateScaleFactor.py -> build/bdist.linux-i686/wheel/deeptools copying build/lib/deeptools/deeptools_list_tools.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/plotProfile.py -> build/bdist.linux-i686/wheel/deeptools copying build/lib/deeptools/plotFingerprint.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/plotCorrelation.py -> build/bdist.linux-i686/wheel/deeptools -copying build/lib/deeptools/bamCompare.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/multiBamSummary.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/utilities.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/plotCoverage.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/getScaleFactor.py -> build/bdist.linux-i686/wheel/deeptools copying build/lib/deeptools/plotHeatmap.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/computeMatrixOperations.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/bamCoverage.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/bamCompare.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/misc.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/__init__.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/sumCoveragePerBin.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/plotCorrelation.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/parserCommon.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/deepBlue.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/correctGCBias.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/getRatio.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/alignmentSieve.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/multiBigwigSummary.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/mapReduce.py -> build/bdist.linux-i686/wheel/deeptools +copying build/lib/deeptools/writeBedGraph_bam_and_bw.py -> build/bdist.linux-i686/wheel/deeptools running install_egg_info Copying deepTools.egg-info to build/bdist.linux-i686/wheel/deepTools-3.5.4.egg-info running install_scripts creating build/bdist.linux-i686/wheel/deepTools-3.5.4.dist-info/WHEEL -creating '/build/reproducible-path/python-deeptools-3.5.4+dfsg/.pybuild/cpython3_3.11_deeptools/.tmp-2e94t672/deepTools-3.5.4-py3-none-any.whl' and adding 'build/bdist.linux-i686/wheel' to it +creating '/build/reproducible-path/python-deeptools-3.5.4+dfsg/.pybuild/cpython3_3.11_deeptools/.tmp-48ok84zq/deepTools-3.5.4-py3-none-any.whl' and adding 'build/bdist.linux-i686/wheel' to it adding 'deeptools/SES_scaleFactor.py' adding 'deeptools/__init__.py' adding 'deeptools/alignmentSieve.py' @@ -1656,7 +1692,7 @@ ../../../deeptools/test/test_writeBedGraph.py::TestWriteBedGraph::test_writeBedGraph_cigar[bam] PASSED [ 99%] ../../../deeptools/test/test_writeBedGraph.py::TestWriteBedGraph::test_writeBedGraph_cigar[cram] PASSED [100%] -======================== 99 passed, 1 skipped in 15.82s ======================== +======================== 99 passed, 1 skipped in 32.81s ======================== I: pybuild base:311: cd /build/reproducible-path/python-deeptools-3.5.4+dfsg/.pybuild/cpython3_3.11_deeptools/build; python3.11 -m pytest -v /build/reproducible-path/python-deeptools-3.5.4+dfsg/deeptools/ ============================= test session starts ============================== platform linux -- Python 3.11.9, pytest-7.4.4, pluggy-1.5.0 -- /usr/bin/python3.11 @@ -1765,8 +1801,8 @@ ../../../deeptools/test/test_writeBedGraph.py::TestWriteBedGraph::test_writeBedGraph_cigar[bam] PASSED [ 99%] ../../../deeptools/test/test_writeBedGraph.py::TestWriteBedGraph::test_writeBedGraph_cigar[cram] PASSED [100%] -======================== 99 passed, 1 skipped in 16.29s ======================== - rm -fr -- /tmp/dh-xdg-rundir-wd0q47LD +======================== 99 passed, 1 skipped in 37.61s ======================== + rm -fr -- /tmp/dh-xdg-rundir-iFpW3Zyf create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild @@ -1828,7 +1864,7 @@ D: dh_python3 pydist:173: trying to find dependency for scipy >=0.17.0 (python=None) D: dh_python3 pydist:207: dependency: module seems to be installed D: dh_python3 pydist:270: dependency: included in build-deps -D: dh_python3 depends:253: D={'python3-scipy', 'python3-matplotlib', 'python3-numpy', 'python3:any', 'python3-plotly', 'python3-py2bit', 'python3-numpydoc', 'python3-deeptoolsintervals', 'python3-pysam', 'python3-pybigwig', 'python3-importlib-metadata'}; R=[]; S=[]; E=[], B=[]; RT=[] +D: dh_python3 depends:253: D={'python3-deeptoolsintervals', 'python3-matplotlib', 'python3:any', 'python3-pysam', 'python3-numpy', 'python3-plotly', 'python3-py2bit', 'python3-importlib-metadata', 'python3-numpydoc', 'python3-pybigwig', 'python3-scipy'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild @@ -1875,12 +1911,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/32837/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/32837/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/117096 and its subdirectories -I: Current time: Tue Jun 10 10:45:34 -12 2025 -I: pbuilder-time-stamp: 1749595534 +I: removing directory /srv/workspace/pbuilder/32837 and its subdirectories +I: Current time: Thu May 9 06:26:56 +14 2024 +I: pbuilder-time-stamp: 1715185616