Diff of the two buildlogs: -- --- b1/build.log 2024-05-13 14:45:51.500153287 +0000 +++ b2/build.log 2024-05-13 14:47:09.856818933 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Jun 15 09:07:02 -12 2025 -I: pbuilder-time-stamp: 1750021622 +I: Current time: Tue May 14 04:45:54 +14 2024 +I: pbuilder-time-stamp: 1715611554 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -30,54 +30,86 @@ dpkg-source: info: applying blas.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/77155/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2518/tmp/hooks/D01_modify_environment starting +debug: Running on ionos12-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 13 14:46 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2518/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2518/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=10 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='fa99bdcecdcd448f8d6cac4e6742d927' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='77155' - PS1='# ' - PS2='> ' + INVOCATION_ID=25b147170205432c9cf7ee6ccfd50187 + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2518 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.KJonkBAA/pbuilderrc_TUP3 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.KJonkBAA/b1 --logfile b1/build.log plink1.9_1.90~b7.2-231211-1.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.KJonkBAA/pbuilderrc_i0Ty --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.KJonkBAA/b2 --logfile b2/build.log plink1.9_1.90~b7.2-231211-1.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos16-i386 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Jun 14 18:01 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/77155/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 13 11:26 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2518/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -157,7 +189,7 @@ Get: 34 http://deb.debian.org/debian trixie/main i386 liblapack3 i386 3.12.0-3 [2167 kB] Get: 35 http://deb.debian.org/debian trixie/main i386 liblapack-dev i386 3.12.0-3 [4400 kB] Get: 36 http://deb.debian.org/debian trixie/main i386 zlib1g-dev i386 1:1.3.dfsg-3.1 [915 kB] -Fetched 27.8 MB in 1s (51.1 MB/s) +Fetched 27.8 MB in 1s (38.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19684 files and directories currently installed.) @@ -320,7 +352,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/plink1.9-1.90~b7.2-231211/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../plink1.9_1.90~b7.2-231211-1_source.changes +I: user script /srv/workspace/pbuilder/2518/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/2518/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/plink1.9-1.90~b7.2-231211/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../plink1.9_1.90~b7.2-231211-1_source.changes dpkg-buildpackage: info: source package plink1.9 dpkg-buildpackage: info: source version 1.90~b7.2-231211-1 dpkg-buildpackage: info: source distribution unstable @@ -332,7 +368,7 @@ debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/plink1.9-1.90~b7.2-231211' dh_auto_clean - make -j22 clean + make -j10 clean make[2]: Entering directory '/build/reproducible-path/plink1.9-1.90~b7.2-231211' rm -f plink.o plink_assoc.o plink_calc.o plink_cluster.o plink_cnv.o plink_common.o plink_data.o plink_dosage.o plink_family.o plink_filter.o plink_glm.o plink_help.o plink_homozyg.o plink_lasso.o plink_ld.o plink_matrix.o plink_misc.o plink_perm.o plink_rserve.o plink_set.o plink_stats.o SFMT.o dcdflib.o pigz.o yarn.o Rconnection.o hfile.o bgzf.o plink plinkw make[2]: Leaving directory '/build/reproducible-path/plink1.9-1.90~b7.2-231211' @@ -348,62 +384,49 @@ debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/plink1.9-1.90~b7.2-231211' dh_auto_build - make -j22 "INSTALL=install --strip-program=true" + make -j10 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/plink1.9-1.90~b7.2-231211' g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security plink.c -o plink.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security plink_assoc.c -o plink_assoc.o g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security plink_calc.c -o plink_calc.o -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security plink_cluster.c -o plink_cluster.o -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security plink_cnv.c -o plink_cnv.o -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security plink_common.c -o plink_common.o -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security plink_data.c -o plink_data.o -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security plink_dosage.c -o plink_dosage.o -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security plink_family.c -o plink_family.o -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security plink_filter.c -o plink_filter.o -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security plink_glm.c -o plink_glm.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security plink_help.c -o plink_help.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security plink_homozyg.c -o plink_homozyg.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security plink_lasso.c -o plink_lasso.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security plink_ld.c -o plink_ld.o -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security plink_matrix.c -o plink_matrix.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security plink_misc.c -o plink_misc.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security plink_perm.c -o plink_perm.o -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security plink_rserve.c -o plink_rserve.o -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security plink_set.c -o plink_set.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security plink_glm.c -o plink_glm.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security plink_stats.c -o plink_stats.o +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security plink_help.c -o plink_help.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security SFMT.c -o SFMT.o +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security plink_homozyg.c -o plink_homozyg.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security plink_lasso.c -o plink_lasso.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security plink_ld.c -o plink_ld.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security dcdflib.c -o dcdflib.o +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security plink_matrix.c -o plink_matrix.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security pigz.c -o pigz.o +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security plink_misc.c -o plink_misc.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security yarn.c -o yarn.o -g++ -x c++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security Rconnection.cc -o Rconnection.o +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security plink_perm.c -o plink_perm.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security hfile.c -o hfile.o +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security plink_rserve.c -o plink_rserve.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security bgzf.c -o bgzf.o +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security plink_set.c -o plink_set.o +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security plink_stats.c -o plink_stats.o cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ In file included from plink_data.c:18: plink_data.c: In function 'int32_t ped_to_bed(char*, char*, char*, char*, uint32_t, uint64_t, int32_t, Chrom_info*)': @@ -427,6 +450,17 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security SFMT.c -o SFMT.o +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security dcdflib.c -o dcdflib.o +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security pigz.c -o pigz.o +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security yarn.c -o yarn.o +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +g++ -x c++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security Rconnection.cc -o Rconnection.o +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security hfile.c -o hfile.o +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ plink_data.c: In function 'int32_t vcf_to_bed(char*, char*, char*, int32_t, uint64_t, char*, char, char, double, char*, double, double, uint32_t, Chrom_info*)': plink_data.c:8040:24: warning: '%s' directive output may be truncated writing between 5 and 2147483645 bytes into a region of size 262122 [-Wformat-truncation=] 8040 | LOGERRPRINTFWW("Error: Failed to open %s.\n", vcfname); @@ -446,6 +480,8 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -DSTABLE_BUILD -DDYNAMIC_ZLIB -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/plink1.9-1.90~b7.2-231211=. -fstack-protector-strong -Wformat -Werror=format-security bgzf.c -o bgzf.o +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ plink_data.c: In function 'int32_t merge_fam_id_scan(char*, char*, uint32_t, uintptr_t*, uint32_t*, uint32_t*, Ll_fam**, uint64_t*, uint32_t*, uint32_t*, uint32_t*)': plink_data.c:14584:22: warning: '%s' directive output may be truncated writing between 9 and 2147483645 bytes into a region of size 262122 [-Wformat-truncation=] 14584 | LOGERRPRINTFWW("Error: Failed to open %s. (--bfile expects a filename *prefix*; '.bed', '.bim', and '.fam' are automatically appended.)\n", famname); @@ -497,8 +533,8 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'plink1.9' in '../plink1.9_1.90~b7.2-231211-1_i386.deb'. dpkg-deb: building package 'plink1.9-dbgsym' in '../plink1.9-dbgsym_1.90~b7.2-231211-1_i386.deb'. +dpkg-deb: building package 'plink1.9' in '../plink1.9_1.90~b7.2-231211-1_i386.deb'. dpkg-genbuildinfo --build=binary -O../plink1.9_1.90~b7.2-231211-1_i386.buildinfo dpkg-genchanges --build=binary -O../plink1.9_1.90~b7.2-231211-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -506,12 +542,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2518/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2518/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/77155 and its subdirectories -I: Current time: Sun Jun 15 09:08:49 -12 2025 -I: pbuilder-time-stamp: 1750021729 +I: removing directory /srv/workspace/pbuilder/2518 and its subdirectories +I: Current time: Tue May 14 04:47:09 +14 2024 +I: pbuilder-time-stamp: 1715611629