Diff of the two buildlogs: -- --- b1/build.log 2024-05-17 08:50:09.600877299 +0000 +++ b2/build.log 2024-05-17 08:52:20.027333292 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu May 16 20:47:09 -12 2024 -I: pbuilder-time-stamp: 1715935629 +I: Current time: Fri Jun 20 05:13:17 +14 2025 +I: pbuilder-time-stamp: 1750345997 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -32,54 +32,86 @@ dpkg-source: info: applying do-not-overflow-int.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/60953/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/91494/tmp/hooks/D01_modify_environment starting +debug: Running on ionos16-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jun 19 15:13 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/91494/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/91494/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=21 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='46bd7b1bb9f74ac7acb0564e6ca9342a' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='60953' - PS1='# ' - PS2='> ' + INVOCATION_ID=0a5ea5d0ef3544e78d6822ee7c182d0c + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=91494 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.gwjzkalh/pbuilderrc_Sref --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.gwjzkalh/b1 --logfile b1/build.log pinfish_0.1.0+ds-4.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.gwjzkalh/pbuilderrc_40Qv --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.gwjzkalh/b2 --logfile b2/build.log pinfish_0.1.0+ds-4.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos12-i386 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-21-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.90-1 (2024-05-03) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 16 11:24 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/60953/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Jun 17 17:46 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/91494/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -201,7 +233,7 @@ Get: 72 http://deb.debian.org/debian trixie/main i386 libhts3t64 i386 1.19+ds-1.1+b1 [491 kB] Get: 73 http://deb.debian.org/debian trixie/main i386 libncurses6 i386 6.5-2 [111 kB] Get: 74 http://deb.debian.org/debian trixie/main i386 samtools i386 1.19.2-1+b1 [682 kB] -Fetched 74.4 MB in 1s (63.0 MB/s) +Fetched 74.4 MB in 1s (84.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19684 files and directories currently installed.) @@ -512,7 +544,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/pinfish-0.1.0+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pinfish_0.1.0+ds-4_source.changes +I: user script /srv/workspace/pbuilder/91494/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/91494/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/pinfish-0.1.0+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../pinfish_0.1.0+ds-4_source.changes dpkg-buildpackage: info: source package pinfish dpkg-buildpackage: info: source version 0.1.0+ds-4 dpkg-buildpackage: info: source distribution unstable @@ -534,98 +570,98 @@ dh_autoreconf -O--builddirectory=_build -O--buildsystem=golang dh_auto_configure -O--builddirectory=_build -O--buildsystem=golang dh_auto_build -O--builddirectory=_build -O--buildsystem=golang - cd _build && go install -trimpath -v -p 11 github.com/nanoporetech/pinfish/cluster_gff github.com/nanoporetech/pinfish/collapse_partials github.com/nanoporetech/pinfish/polish_clusters github.com/nanoporetech/pinfish/spliced_bam2gff -internal/coverage/rtcov + cd _build && go install -trimpath -v -p 21 github.com/nanoporetech/pinfish/cluster_gff github.com/nanoporetech/pinfish/collapse_partials github.com/nanoporetech/pinfish/polish_clusters github.com/nanoporetech/pinfish/spliced_bam2gff +internal/race +unicode/utf8 +unicode/utf16 +internal/unsafeheader +cmp internal/godebugs +internal/nettrace +crypto/internal/alias +encoding +math/bits +sync/atomic +unicode internal/goarch -internal/unsafeheader -internal/goexperiment -internal/cpu -runtime/internal/syscall -internal/race +internal/itoa internal/goos +internal/coverage/rtcov +internal/goexperiment +log/internal runtime/internal/atomic -sync/atomic -unicode/utf8 -unicode +runtime/internal/syscall +internal/cpu +crypto/internal/boring/sig +runtime/internal/math internal/chacha8rand internal/abi -runtime/internal/math -encoding runtime/internal/sys -internal/itoa -math/bits -cmp -crypto/internal/alias -crypto/internal/boring/sig -unicode/utf16 -internal/nettrace -log/internal -internal/bytealg slices math +internal/bytealg runtime -internal/reflectlite crypto/subtle +internal/reflectlite sync -internal/testlog internal/singleflight +internal/testlog internal/bisect runtime/cgo errors -sort internal/godebug -internal/safefilepath -io +sort internal/oserror -vendor/golang.org/x/net/dns/dnsmessage +io path +internal/safefilepath +vendor/golang.org/x/net/dns/dnsmessage strconv syscall -math/rand internal/intern -bytes -strings -crypto/internal/randutil +math/rand hash +crypto/internal/randutil text/tabwriter +bytes +strings hash/crc32 container/heap crypto -reflect net/netip +reflect github.com/biogo/biogo/feat bufio github.com/biogo/biogo/io/featio github.com/biogo/biogo/feat/gene -internal/syscall/unix internal/syscall/execenv +internal/syscall/unix time -internal/fmtsort -encoding/binary context io/fs internal/poll +internal/fmtsort +encoding/binary +os crypto/md5 encoding/base64 crypto/cipher -os crypto/internal/boring crypto/sha1 io/ioutil -fmt path/filepath +fmt net os/exec -database/sql/driver github.com/biogo/biogo/alphabet -encoding/csv flag +database/sql/driver +encoding/hex +encoding/csv log net/url -encoding/hex -compress/flate encoding/json +compress/flate math/big github.com/biogo/biogo/seq github.com/biogo/biogo/feat/genome @@ -642,15 +678,15 @@ github.com/biogo/hts/sam crypto/rand github.com/biogo/hts/bam -github.com/nanoporetech/pinfish/spliced_bam2gff github.com/nanoporetech/pinfish/polish_clusters +github.com/nanoporetech/pinfish/spliced_bam2gff github.com/google/uuid github.com/nanoporetech/pinfish/cluster_gff github.com/nanoporetech/pinfish/collapse_partials debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/pinfish-0.1.0+ds' dh_auto_test - cd _build && go test -vet=off -v -p 11 github.com/nanoporetech/pinfish/cluster_gff github.com/nanoporetech/pinfish/collapse_partials github.com/nanoporetech/pinfish/polish_clusters github.com/nanoporetech/pinfish/spliced_bam2gff + cd _build && go test -vet=off -v -p 21 github.com/nanoporetech/pinfish/cluster_gff github.com/nanoporetech/pinfish/collapse_partials github.com/nanoporetech/pinfish/polish_clusters github.com/nanoporetech/pinfish/spliced_bam2gff ? github.com/nanoporetech/pinfish/cluster_gff [no test files] ? github.com/nanoporetech/pinfish/collapse_partials [no test files] ? github.com/nanoporetech/pinfish/polish_clusters [no test files] @@ -681,10 +717,10 @@ dh_fixperms -O--builddirectory=_build -O--buildsystem=golang dh_missing -O--builddirectory=_build -O--buildsystem=golang dh_strip -a -O--builddirectory=_build -O--buildsystem=golang -dh_strip: warning: Could not find the BuildID in debian/pinfish/usr/bin/spliced_bam2gff -dh_strip: warning: Could not find the BuildID in debian/pinfish/usr/bin/cluster_gff dh_strip: warning: Could not find the BuildID in debian/pinfish/usr/bin/collapse_partials dh_strip: warning: Could not find the BuildID in debian/pinfish/usr/bin/polish_clusters +dh_strip: warning: Could not find the BuildID in debian/pinfish/usr/bin/spliced_bam2gff +dh_strip: warning: Could not find the BuildID in debian/pinfish/usr/bin/cluster_gff dh_makeshlibs -a -O--builddirectory=_build -O--buildsystem=golang dh_shlibdeps -a -O--builddirectory=_build -O--buildsystem=golang dh_installdeb -O--builddirectory=_build -O--buildsystem=golang @@ -694,8 +730,8 @@ dpkg-gencontrol: warning: package pinfish: substitution variable ${misc:Static-Built-Using} unused, but is defined dh_md5sums -O--builddirectory=_build -O--buildsystem=golang dh_builddeb -O--builddirectory=_build -O--buildsystem=golang -dpkg-deb: building package 'pinfish-examples' in '../pinfish-examples_0.1.0+ds-4_all.deb'. dpkg-deb: building package 'pinfish' in '../pinfish_0.1.0+ds-4_i386.deb'. +dpkg-deb: building package 'pinfish-examples' in '../pinfish-examples_0.1.0+ds-4_all.deb'. dpkg-genbuildinfo --build=binary -O../pinfish_0.1.0+ds-4_i386.buildinfo dpkg-genchanges --build=binary -O../pinfish_0.1.0+ds-4_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -703,12 +739,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/91494/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/91494/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/60953 and its subdirectories -I: Current time: Thu May 16 20:50:08 -12 2024 -I: pbuilder-time-stamp: 1715935808 +I: removing directory /srv/workspace/pbuilder/91494 and its subdirectories +I: Current time: Fri Jun 20 05:15:18 +14 2025 +I: pbuilder-time-stamp: 1750346118