Diff of the two buildlogs:
--
--- b1/build.log 2025-03-02 21:23:51.906619918 +0000
+++ b2/build.log 2025-03-02 21:25:32.050087876 +0000
@@ -1,6 +1,6 @@
I: pbuilder: network access will be disabled during build
-I: Current time: Sat Apr 4 15:45:41 -12 2026
-I: pbuilder-time-stamp: 1775360741
+I: Current time: Mon Mar 3 11:23:54 +14 2025
+I: pbuilder-time-stamp: 1740950634
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz]
I: copying local configuration
@@ -29,54 +29,86 @@
dpkg-source: info: applying c23.patch
I: Not using root during the build.
I: Installing the build-deps
-I: user script /srv/workspace/pbuilder/87748/tmp/hooks/D02_print_environment starting
+I: user script /srv/workspace/pbuilder/18202/tmp/hooks/D01_modify_environment starting
+debug: Running on ionos2-i386.
+I: Changing host+domainname to test build reproducibility
+I: Adding a custom variable just for the fun of it...
+I: Changing /bin/sh to bash
+'/bin/sh' -> '/bin/bash'
+lrwxrwxrwx 1 root root 9 Mar 2 21:24 /bin/sh -> /bin/bash
+I: Setting pbuilder2's login shell to /bin/bash
+I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
+I: user script /srv/workspace/pbuilder/18202/tmp/hooks/D01_modify_environment finished
+I: user script /srv/workspace/pbuilder/18202/tmp/hooks/D02_print_environment starting
I: set
- BUILDDIR='/build/reproducible-path'
- BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
- BUILDUSERNAME='pbuilder1'
- BUILD_ARCH='i386'
- DEBIAN_FRONTEND='noninteractive'
- DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 '
- DISTRIBUTION='trixie'
- HOME='/root'
- HOST_ARCH='i386'
+ BASH=/bin/sh
+ BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
+ BASH_ALIASES=()
+ BASH_ARGC=()
+ BASH_ARGV=()
+ BASH_CMDS=()
+ BASH_LINENO=([0]="12" [1]="0")
+ BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
+ BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
+ BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="i686-pc-linux-gnu")
+ BASH_VERSION='5.2.37(1)-release'
+ BUILDDIR=/build/reproducible-path
+ BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
+ BUILDUSERNAME=pbuilder2
+ BUILD_ARCH=i386
+ DEBIAN_FRONTEND=noninteractive
+ DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=10 '
+ DIRSTACK=()
+ DISTRIBUTION=trixie
+ EUID=0
+ FUNCNAME=([0]="Echo" [1]="main")
+ GROUPS=()
+ HOME=/root
+ HOSTNAME=i-capture-the-hostname
+ HOSTTYPE=i686
+ HOST_ARCH=i386
IFS='
'
- INVOCATION_ID='5c9593cb78f44b77af1eff9fc8e91819'
- LANG='C'
- LANGUAGE='en_US:en'
- LC_ALL='C'
- LD_LIBRARY_PATH='/usr/lib/libeatmydata'
- LD_PRELOAD='libeatmydata.so'
- MAIL='/var/mail/root'
- OPTIND='1'
- PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
- PBCURRENTCOMMANDLINEOPERATION='build'
- PBUILDER_OPERATION='build'
- PBUILDER_PKGDATADIR='/usr/share/pbuilder'
- PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
- PBUILDER_SYSCONFDIR='/etc'
- PPID='87748'
- PS1='# '
- PS2='> '
+ INVOCATION_ID=35bfdd6485004ebfb320e111ef370fca
+ LANG=C
+ LANGUAGE=de_CH:de
+ LC_ALL=C
+ LD_LIBRARY_PATH=/usr/lib/libeatmydata
+ LD_PRELOAD=libeatmydata.so
+ MACHTYPE=i686-pc-linux-gnu
+ MAIL=/var/mail/root
+ OPTERR=1
+ OPTIND=1
+ OSTYPE=linux-gnu
+ PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
+ PBCURRENTCOMMANDLINEOPERATION=build
+ PBUILDER_OPERATION=build
+ PBUILDER_PKGDATADIR=/usr/share/pbuilder
+ PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
+ PBUILDER_SYSCONFDIR=/etc
+ PIPESTATUS=([0]="0")
+ POSIXLY_CORRECT=y
+ PPID=18202
PS4='+ '
- PWD='/'
- SHELL='/bin/bash'
- SHLVL='2'
- SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.5AHyCGzK/pbuilderrc_V7pu --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.5AHyCGzK/b1 --logfile b1/build.log paml_4.9j+dfsg-6.dsc'
- SUDO_GID='112'
- SUDO_UID='107'
- SUDO_USER='jenkins'
- TERM='unknown'
- TZ='/usr/share/zoneinfo/Etc/GMT+12'
- USER='root'
- _='/usr/bin/systemd-run'
- http_proxy='http://213.165.73.152:3128'
+ PWD=/
+ SHELL=/bin/bash
+ SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
+ SHLVL=3
+ SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.5AHyCGzK/pbuilderrc_CBb6 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.5AHyCGzK/b2 --logfile b2/build.log paml_4.9j+dfsg-6.dsc'
+ SUDO_GID=112
+ SUDO_UID=107
+ SUDO_USER=jenkins
+ TERM=unknown
+ TZ=/usr/share/zoneinfo/Etc/GMT-14
+ UID=0
+ USER=root
+ _='I: set'
+ http_proxy=http://46.16.76.132:3128
I: uname -a
- Linux ionos16-i386 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux
+ Linux i-capture-the-hostname 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux
I: ls -l /bin
- lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin
-I: user script /srv/workspace/pbuilder/87748/tmp/hooks/D02_print_environment finished
+ lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin
+I: user script /srv/workspace/pbuilder/18202/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
@@ -142,7 +174,7 @@
Get: 28 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 29 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 30 http://deb.debian.org/debian trixie/main i386 debhelper all 13.24.1 [920 kB]
-Fetched 20.8 MB in 0s (57.1 MB/s)
+Fetched 20.8 MB in 1s (22.1 MB/s)
Preconfiguring packages ...
Selecting previously unselected package sensible-utils.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19789 files and directories currently installed.)
@@ -277,7 +309,11 @@
Building tag database...
-> Finished parsing the build-deps
I: Building the package
-I: Running cd /build/reproducible-path/paml-4.9j+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../paml_4.9j+dfsg-6_source.changes
+I: user script /srv/workspace/pbuilder/18202/tmp/hooks/A99_set_merged_usr starting
+Not re-configuring usrmerge for trixie
+I: user script /srv/workspace/pbuilder/18202/tmp/hooks/A99_set_merged_usr finished
+hostname: Name or service not known
+I: Running cd /build/reproducible-path/paml-4.9j+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../paml_4.9j+dfsg-6_source.changes
dpkg-buildpackage: info: source package paml
dpkg-buildpackage: info: source version 4.9j+dfsg-6
dpkg-buildpackage: info: source distribution unstable
@@ -289,7 +325,7 @@
debian/rules override_dh_auto_clean
make[1]: Entering directory '/build/reproducible-path/paml-4.9j+dfsg'
dh_auto_clean
- cd src && make -j22 clean
+ cd src && make -j10 clean
make[2]: Entering directory '/build/reproducible-path/paml-4.9j+dfsg/src'
rm -f baseml codeml basemlg mcmctree pamp evolver yn00 chi2 infinitesites
make[2]: Leaving directory '/build/reproducible-path/paml-4.9j+dfsg/src'
@@ -303,7 +339,7 @@
dh_autoreconf -O--sourcedirectory=src
dh_auto_configure -O--sourcedirectory=src
dh_auto_build -O--sourcedirectory=src
- cd src && make -j22 "INSTALL=install --strip-program=true"
+ cd src && make -j10 "INSTALL=install --strip-program=true"
make[1]: Entering directory '/build/reproducible-path/paml-4.9j+dfsg/src'
cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/paml-4.9j+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o baseml baseml.c tools.c -Wl,-z,relro -Wl,-z,now -lm
cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/paml-4.9j+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -o codeml codeml.c tools.c -Wl,-z,relro -Wl,-z,now -lm
@@ -319,82 +355,8 @@
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from yn00.c:70:
treesub.c: In function 'ReadSeq':
-treesub.c:627:13: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
- 627 | fgets(line, lline, fseq);
- | ^~~~~~~~~~~~~~~~~~~~~~~~
-treesub.c:660:39: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
- 660 | if (com.ngene > 9) fscanf(fseq, "%d", &ch);
- | ^~~~~~~~~~~~~~~~~~~~~~~
-treesub.c:949:13: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
- 949 | fscanf(fseq, "%lf", &com.fpatt[h]);
- | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-In file included from basemlg.c:82:
-treesub.c: In function 'ReadSeq':
-treesub.c:627:13: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
- 627 | fgets(line, lline, fseq);
- | ^~~~~~~~~~~~~~~~~~~~~~~~
-treesub.c:660:39: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
- 660 | if (com.ngene > 9) fscanf(fseq, "%d", &ch);
- | ^~~~~~~~~~~~~~~~~~~~~~~
-treesub.c:949:13: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
- 949 | fscanf(fseq, "%lf", &com.fpatt[h]);
- | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-In file included from pamp.c:66:
-treesub.c: In function 'ReadSeq':
-treesub.c:627:13: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
- 627 | fgets(line, lline, fseq);
- | ^~~~~~~~~~~~~~~~~~~~~~~~
-treesub.c:660:39: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
- 660 | if (com.ngene > 9) fscanf(fseq, "%d", &ch);
- | ^~~~~~~~~~~~~~~~~~~~~~~
-treesub.c:949:13: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
- 949 | fscanf(fseq, "%lf", &com.fpatt[h]);
- | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-treesub.c: In function 'ReadTreeB':
-treesub.c:2812:4: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
- 2812 | fscanf(ftree, "%d", &tree.nbranch);
- | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-treesub.c:2827:17: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
- 2827 | if (popline) fgets(line, 254, ftree);
- | ^~~~~~~~~~~~~~~~~~~~~~~
-treesub.c: In function 'ReadTreeN':
-treesub.c:3091:10: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
- 3091 | fscanf(ftree, "%lf", &nodes[inode].branch);
- | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-treesub.c:3151:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
- 3151 | fgets(line, lline, ftree);
- | ^~~~~~~~~~~~~~~~~~~~~~~~~
-treesub.c: In function 'readx':
-treesub.c:3956:4: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
- 3956 | fscanf(finitials, "%lf", &xin[i = 0]);
- | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In file included from evolver.c:67:
treesub.c: In function 'ReadTreeB':
-treesub.c:2812:4: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
- 2812 | fscanf(ftree, "%d", &tree.nbranch);
- | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-treesub.c:2827:17: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
- 2827 | if (popline) fgets(line, 254, ftree);
- | ^~~~~~~~~~~~~~~~~~~~~~~
-treesub.c: In function 'ReadTreeN':
-treesub.c:3091:10: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
- 3091 | fscanf(ftree, "%lf", &nodes[inode].branch);
- | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-treesub.c:3151:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
- 3151 | fgets(line, lline, ftree);
- | ^~~~~~~~~~~~~~~~~~~~~~~~~
-pamp.c: In function 'main':
-pamp.c:115:4: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
- 115 | fscanf(ftree, "%d%d", &i, &ntree);
- | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-In file included from mcmctree.c:192:
-treesub.c: In function 'ReadMorphology':
-treesub.c:447:7: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
- 447 | fscanf(fin, "%s", com.spname[i]);
- | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-treesub.c:450:10: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
- 450 | fscanf(fin, "%lf", &data.zmorph[locus][i][j]);
- | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-treesub.c: In function 'ReadSeq':
treesub.c:627:13: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
627 | fgets(line, lline, fseq);
| ^~~~~~~~~~~~~~~~~~~~~~~~
@@ -404,50 +366,6 @@
treesub.c:949:13: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
949 | fscanf(fseq, "%lf", &com.fpatt[h]);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-treesub.c: In function 'ReadTreeB':
-treesub.c:2812:4: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
- 2812 | fscanf(ftree, "%d", &tree.nbranch);
- | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-treesub.c:2827:17: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
- 2827 | if (popline) fgets(line, 254, ftree);
- | ^~~~~~~~~~~~~~~~~~~~~~~
-treesub.c: In function 'ReadTreeN':
-treesub.c:3091:10: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
- 3091 | fscanf(ftree, "%lf", &nodes[inode].branch);
- | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-treesub.c:3151:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
- 3151 | fgets(line, lline, ftree);
- | ^~~~~~~~~~~~~~~~~~~~~~~~~
-treesub.c: In function 'ReadTreeSeqs':
-treesub.c:8742:4: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
- 8742 | fscanf(ftree, "%d%d", &stree.nspecies, &i);
- | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-mcmctree.c: In function 'ReadBlengthGH':
-mcmctree.c:840:7: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
- 840 | fscanf(fBGH, "%d", &i);
- | ^~~~~~~~~~~~~~~~~~~~~~
-mcmctree.c:861:10: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
- 861 | fscanf(fBGH, "%lf", &data.blMLE[locus][i]);
- | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-mcmctree.c:868:10: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
- 868 | fscanf(fBGH, "%lf", &data.Gradient[locus][i]);
- | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-mcmctree.c:870:7: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
- 870 | fscanf(fBGH, "%s", line);
- | ^~~~~~~~~~~~~~~~~~~~~~~~
-mcmctree.c: In function 'GenerateBlengthGH':
-mcmctree.c:1028:7: warning: ignoring return value of 'system' declared with attribute 'warn_unused_result' [-Wunused-result]
- 1028 | system(line);
- | ^~~~~~~~~~~~
-mcmctree.c: In function 'Infinitesites':
-mcmctree.c:1385:4: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
- 1385 | fscanf(fin, "%d", &i);
- | ^~~~~~~~~~~~~~~~~~~~~
-mcmctree.c:1396:10: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
- 1396 | fscanf(fin, "%lf", &FixedDs[i]);
- | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-In file included from evolver.c:67:
-treesub.c: In function 'ReadTreeB':
treesub.c:2812:4: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
2812 | fscanf(ftree, "%d", &tree.nbranch);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
@@ -465,10 +383,6 @@
treesub.c:4159:16: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
4159 | fscanf(ftree, "%lf", &y);
| ^~~~~~~~~~~~~~~~~~~~~~~~
-mcmctree.c: In function 'DescriptiveStatisticsSimpleMCMCTREE':
-mcmctree.c:3824:10: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
- 3824 | fscanf(fin, "%lf", &dat[j*n + i]);
- | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
treesub.c: In function 'CladeSupport':
treesub.c:4369:4: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
4369 | fscanf(fM, "%d%d", &i, &ntreeM);
@@ -479,7 +393,7 @@
treesub.c:4419:4: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
4419 | fscanf(fM, "%d%d", &s, &ntreeM);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-In file included from codeml.c:238:
+In file included from pamp.c:66:
treesub.c: In function 'ReadSeq':
treesub.c:627:13: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
627 | fgets(line, lline, fseq);
@@ -532,15 +446,8 @@
evolver.c:292:7: warning: ignoring return value of 'scanf' declared with attribute 'warn_unused_result' [-Wunused-result]
292 | scanf("%s", key);
| ^~~~~~~~~~~~~~~~
-In file included from baseml.c:131:
+In file included from basemlg.c:82:
treesub.c: In function 'ReadSeq':
-evolver.c: In function 'TreeDistanceDistribution':
-evolver.c:391:4: warning: ignoring return value of 'scanf' declared with attribute 'warn_unused_result' [-Wunused-result]
- 391 | scanf("%s", treef);
- | ^~~~~~~~~~~~~~~~~~
-evolver.c:394:4: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
- 394 | fscanf(ftree, "%d%d", &com.ns, &ntree);
- | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
treesub.c:627:13: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
627 | fgets(line, lline, fseq);
| ^~~~~~~~~~~~~~~~~~~~~~~~
@@ -550,6 +457,13 @@
treesub.c:949:13: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
949 | fscanf(fseq, "%lf", &com.fpatt[h]);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+evolver.c: In function 'TreeDistanceDistribution':
+evolver.c:391:4: warning: ignoring return value of 'scanf' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 391 | scanf("%s", treef);
+ | ^~~~~~~~~~~~~~~~~~
+evolver.c:394:4: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 394 | fscanf(ftree, "%d%d", &com.ns, &ntree);
+ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
evolver.c: In function 'TreeDistances':
evolver.c:447:4: warning: ignoring return value of 'scanf' declared with attribute 'warn_unused_result' [-Wunused-result]
447 | scanf("%s", treef);
@@ -560,6 +474,10 @@
evolver.c:459:4: warning: ignoring return value of 'scanf' declared with attribute 'warn_unused_result' [-Wunused-result]
459 | scanf("%d", &k);
| ^~~~~~~~~~~~~~~
+evolver.c: In function 'GetDaa':
+evolver.c:639:7: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 639 | fscanf(fdaa, "%lf", &daa[i*n + j]);
+ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
treesub.c: In function 'ReadTreeB':
treesub.c:2812:4: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
2812 | fscanf(ftree, "%d", &tree.nbranch);
@@ -567,17 +485,6 @@
treesub.c:2827:17: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
2827 | if (popline) fgets(line, 254, ftree);
| ^~~~~~~~~~~~~~~~~~~~~~~
-treesub.c: In function 'ReadTreeN':
-treesub.c:3091:10: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
- 3091 | fscanf(ftree, "%lf", &nodes[inode].branch);
- | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-treesub.c:3151:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
- 3151 | fgets(line, lline, ftree);
- | ^~~~~~~~~~~~~~~~~~~~~~~~~
-evolver.c: In function 'GetDaa':
-evolver.c:639:7: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
- 639 | fscanf(fdaa, "%lf", &daa[i*n + j]);
- | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
evolver.c: In function 'Simulate':
evolver.c:810:4: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
810 | fscanf(fin, "%d", &format);
@@ -687,6 +594,128 @@
evolver.c:971:40: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
971 | fscanf(fin, "%d", &com.icode); fgets(line, lline, fin);
| ^~~~~~~~~~~~~~~~~~~~~~~
+treesub.c: In function 'ReadTreeN':
+treesub.c:3091:10: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 3091 | fscanf(ftree, "%lf", &nodes[inode].branch);
+ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+treesub.c:3151:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 3151 | fgets(line, lline, ftree);
+ | ^~~~~~~~~~~~~~~~~~~~~~~~~
+evolver.c: In function 'CladeMrBayesProbabilities':
+evolver.c:1269:4: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 1269 | fscanf(ftree, "%d%d", &i, &k);
+ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+treesub.c: In function 'ReadTreeB':
+treesub.c:2812:4: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 2812 | fscanf(ftree, "%d", &tree.nbranch);
+ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+treesub.c:2827:17: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 2827 | if (popline) fgets(line, 254, ftree);
+ | ^~~~~~~~~~~~~~~~~~~~~~~
+treesub.c: In function 'ReadTreeN':
+treesub.c:3091:10: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 3091 | fscanf(ftree, "%lf", &nodes[inode].branch);
+ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+treesub.c:3151:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 3151 | fgets(line, lline, ftree);
+ | ^~~~~~~~~~~~~~~~~~~~~~~~~
+pamp.c: In function 'main':
+pamp.c:115:4: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 115 | fscanf(ftree, "%d%d", &i, &ntree);
+ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+treesub.c: In function 'readx':
+treesub.c:3956:4: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 3956 | fscanf(finitials, "%lf", &xin[i = 0]);
+ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In file included from mcmctree.c:192:
+treesub.c: In function 'ReadMorphology':
+treesub.c:447:7: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 447 | fscanf(fin, "%s", com.spname[i]);
+ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+treesub.c:450:10: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 450 | fscanf(fin, "%lf", &data.zmorph[locus][i][j]);
+ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+treesub.c: In function 'ReadSeq':
+treesub.c:627:13: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 627 | fgets(line, lline, fseq);
+ | ^~~~~~~~~~~~~~~~~~~~~~~~
+treesub.c:660:39: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 660 | if (com.ngene > 9) fscanf(fseq, "%d", &ch);
+ | ^~~~~~~~~~~~~~~~~~~~~~~
+treesub.c:949:13: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 949 | fscanf(fseq, "%lf", &com.fpatt[h]);
+ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+treesub.c: In function 'ReadTreeB':
+treesub.c:2812:4: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 2812 | fscanf(ftree, "%d", &tree.nbranch);
+ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+treesub.c:2827:17: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 2827 | if (popline) fgets(line, 254, ftree);
+ | ^~~~~~~~~~~~~~~~~~~~~~~
+treesub.c: In function 'ReadTreeN':
+treesub.c:3091:10: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 3091 | fscanf(ftree, "%lf", &nodes[inode].branch);
+ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+treesub.c:3151:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 3151 | fgets(line, lline, ftree);
+ | ^~~~~~~~~~~~~~~~~~~~~~~~~
+treesub.c: In function 'ReadTreeSeqs':
+treesub.c:8742:4: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 8742 | fscanf(ftree, "%d%d", &stree.nspecies, &i);
+ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+mcmctree.c: In function 'ReadBlengthGH':
+mcmctree.c:840:7: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 840 | fscanf(fBGH, "%d", &i);
+ | ^~~~~~~~~~~~~~~~~~~~~~
+mcmctree.c:861:10: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 861 | fscanf(fBGH, "%lf", &data.blMLE[locus][i]);
+ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+mcmctree.c:868:10: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 868 | fscanf(fBGH, "%lf", &data.Gradient[locus][i]);
+ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+mcmctree.c:870:7: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 870 | fscanf(fBGH, "%s", line);
+ | ^~~~~~~~~~~~~~~~~~~~~~~~
+mcmctree.c: In function 'GenerateBlengthGH':
+mcmctree.c:1028:7: warning: ignoring return value of 'system' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 1028 | system(line);
+ | ^~~~~~~~~~~~
+mcmctree.c: In function 'Infinitesites':
+mcmctree.c:1385:4: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 1385 | fscanf(fin, "%d", &i);
+ | ^~~~~~~~~~~~~~~~~~~~~
+mcmctree.c:1396:10: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 1396 | fscanf(fin, "%lf", &FixedDs[i]);
+ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+In file included from baseml.c:131:
+treesub.c: In function 'ReadSeq':
+treesub.c:627:13: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 627 | fgets(line, lline, fseq);
+ | ^~~~~~~~~~~~~~~~~~~~~~~~
+treesub.c:660:39: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 660 | if (com.ngene > 9) fscanf(fseq, "%d", &ch);
+ | ^~~~~~~~~~~~~~~~~~~~~~~
+treesub.c:949:13: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 949 | fscanf(fseq, "%lf", &com.fpatt[h]);
+ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+mcmctree.c: In function 'DescriptiveStatisticsSimpleMCMCTREE':
+mcmctree.c:3824:10: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 3824 | fscanf(fin, "%lf", &dat[j*n + i]);
+ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+treesub.c: In function 'ReadTreeB':
+treesub.c:2812:4: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 2812 | fscanf(ftree, "%d", &tree.nbranch);
+ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+treesub.c:2827:17: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 2827 | if (popline) fgets(line, 254, ftree);
+ | ^~~~~~~~~~~~~~~~~~~~~~~
+treesub.c: In function 'ReadTreeN':
+treesub.c:3091:10: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 3091 | fscanf(ftree, "%lf", &nodes[inode].branch);
+ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+treesub.c:3151:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 3151 | fgets(line, lline, ftree);
+ | ^~~~~~~~~~~~~~~~~~~~~~~~~
treesub.c: In function 'readx':
treesub.c:3956:4: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
3956 | fscanf(finitials, "%lf", &xin[i = 0]);
@@ -699,17 +728,6 @@
treesub.c:4867:7: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
4867 | fscanf(ftree, "%d%d", &i, &ntree);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-evolver.c: In function 'CladeMrBayesProbabilities':
-evolver.c:1269:4: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
- 1269 | fscanf(ftree, "%d%d", &i, &k);
- | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-treesub.c: In function 'ReadTreeB':
-treesub.c:2812:4: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
- 2812 | fscanf(ftree, "%d", &tree.nbranch);
- | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-treesub.c:2827:17: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
- 2827 | if (popline) fgets(line, 254, ftree);
- | ^~~~~~~~~~~~~~~~~~~~~~~
treesub.c: In function 'rell':
treesub.c:5728:4: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
5728 | fscanf(flnf, "%d%d%d", &ntree0, &ls0, &npatt0);
@@ -723,6 +741,24 @@
treesub.c:5763:10: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
5763 | fgets(line, lline, flnf);
| ^~~~~~~~~~~~~~~~~~~~~~~~
+In file included from codeml.c:238:
+treesub.c: In function 'ReadSeq':
+treesub.c:627:13: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 627 | fgets(line, lline, fseq);
+ | ^~~~~~~~~~~~~~~~~~~~~~~~
+treesub.c:660:39: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 660 | if (com.ngene > 9) fscanf(fseq, "%d", &ch);
+ | ^~~~~~~~~~~~~~~~~~~~~~~
+treesub.c:949:13: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 949 | fscanf(fseq, "%lf", &com.fpatt[h]);
+ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+treesub.c: In function 'ReadTreeB':
+treesub.c:2812:4: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 2812 | fscanf(ftree, "%d", &tree.nbranch);
+ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+treesub.c:2827:17: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 2827 | if (popline) fgets(line, 254, ftree);
+ | ^~~~~~~~~~~~~~~~~~~~~~~
treesub.c: In function 'ReadTreeN':
treesub.c:3091:10: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
3091 | fscanf(ftree, "%lf", &nodes[inode].branch);
@@ -730,6 +766,10 @@
treesub.c:3151:7: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
3151 | fgets(line, lline, ftree);
| ^~~~~~~~~~~~~~~~~~~~~~~~~
+treesub.c: In function 'ReadTreeSeqs':
+treesub.c:8742:4: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 8742 | fscanf(ftree, "%d%d", &stree.nspecies, &i);
+ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
treesub.c: In function 'readx':
treesub.c:3956:4: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
3956 | fscanf(finitials, "%lf", &xin[i = 0]);
@@ -738,14 +778,24 @@
treesub.c:4565:7: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
4565 | fscanf(ftree, "%d%d", &i, &ntree);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+treesub.c: In function 'AdHocRateSmoothing':
+treesub.c:9574:13: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 9574 | fscanf(finStep1, "%lf", &x[i]);
+ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+treesub.c:9672:36: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 9672 | for (i = 0; i < com.np; i++) fscanf(finStep2, "%lf", &x[i]);
+ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+treesub.c:9765:13: warning: ignoring return value of 'scanf' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 9765 | scanf("%lf", &Rj[j]);
+ | ^~~~~~~~~~~~~~~~~~~~
treesub.c: In function 'StarDecomposition':
treesub.c:4867:7: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
4867 | fscanf(ftree, "%d%d", &i, &ntree);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-treesub.c: In function 'ReadTreeSeqs':
-treesub.c:8742:4: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
- 8742 | fscanf(ftree, "%d%d", &stree.nspecies, &i);
- | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+treesub.c: In function 'DatingHeteroData':
+treesub.c:9884:10: warning: ignoring return value of 'scanf' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 9884 | scanf("%lf%d? ", &nu_AHRS, &nbrate);
+ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
treesub.c: In function 'rell':
treesub.c:5728:4: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
5728 | fscanf(flnf, "%d%d%d", &ntree0, &ls0, &npatt0);
@@ -759,6 +809,10 @@
treesub.c:5763:10: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result]
5763 | fgets(line, lline, flnf);
| ^~~~~~~~~~~~~~~~~~~~~~~~
+treesub.c: In function 'ReadTreeSeqs':
+treesub.c:8742:4: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
+ 8742 | fscanf(ftree, "%d%d", &stree.nspecies, &i);
+ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
treesub.c: In function 'AdHocRateSmoothing':
treesub.c:9574:13: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
9574 | fscanf(finStep1, "%lf", &x[i]);
@@ -773,10 +827,6 @@
treesub.c:9884:10: warning: ignoring return value of 'scanf' declared with attribute 'warn_unused_result' [-Wunused-result]
9884 | scanf("%lf%d? ", &nu_AHRS, &nbrate);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-treesub.c: In function 'ReadTreeSeqs':
-treesub.c:8742:4: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
- 8742 | fscanf(ftree, "%d%d", &stree.nspecies, &i);
- | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
codeml.c: In function 'GetDaa':
codeml.c:3911:10: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
3911 | fscanf(fdaa, "%lf", &daa[i*naa + j]);
@@ -795,20 +845,6 @@
codeml.c:4318:13: warning: ignoring return value of 'scanf' declared with attribute 'warn_unused_result' [-Wunused-result]
4318 | scanf("%d%d", &is, &js);
| ^~~~~~~~~~~~~~~~~~~~~~~
-treesub.c: In function 'AdHocRateSmoothing':
-treesub.c:9574:13: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
- 9574 | fscanf(finStep1, "%lf", &x[i]);
- | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-treesub.c:9672:36: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
- 9672 | for (i = 0; i < com.np; i++) fscanf(finStep2, "%lf", &x[i]);
- | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-treesub.c:9765:13: warning: ignoring return value of 'scanf' declared with attribute 'warn_unused_result' [-Wunused-result]
- 9765 | scanf("%lf", &Rj[j]);
- | ^~~~~~~~~~~~~~~~~~~~
-treesub.c: In function 'DatingHeteroData':
-treesub.c:9884:10: warning: ignoring return value of 'scanf' declared with attribute 'warn_unused_result' [-Wunused-result]
- 9884 | scanf("%lf%d? ", &nu_AHRS, &nbrate);
- | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
codeml.c: In function 'lfunNSsites_rate':
codeml.c:5238:10: warning: ignoring return value of 'scanf' declared with attribute 'warn_unused_result' [-Wunused-result]
5238 | scanf("%d", &continuous);
@@ -1094,8 +1130,8 @@
dh_md5sums -O--sourcedirectory=src
dh_builddeb -O--sourcedirectory=src
dpkg-deb: building package 'paml' in '../paml_4.9j+dfsg-6_i386.deb'.
-dpkg-deb: building package 'paml-dbgsym' in '../paml-dbgsym_4.9j+dfsg-6_i386.deb'.
dpkg-deb: building package 'paml-doc' in '../paml-doc_4.9j+dfsg-6_all.deb'.
+dpkg-deb: building package 'paml-dbgsym' in '../paml-dbgsym_4.9j+dfsg-6_i386.deb'.
dpkg-genbuildinfo --build=binary -O../paml_4.9j+dfsg-6_i386.buildinfo
dpkg-genchanges --build=binary -O../paml_4.9j+dfsg-6_i386.changes
dpkg-genchanges: info: binary-only upload (no source code included)
@@ -1103,12 +1139,14 @@
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
+I: user script /srv/workspace/pbuilder/18202/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/18202/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
-I: removing directory /srv/workspace/pbuilder/87748 and its subdirectories
-I: Current time: Sat Apr 4 15:46:49 -12 2026
-I: pbuilder-time-stamp: 1775360809
+I: removing directory /srv/workspace/pbuilder/18202 and its subdirectories
+I: Current time: Mon Mar 3 11:25:31 +14 2025
+I: pbuilder-time-stamp: 1740950731