Diff of the two buildlogs: -- --- b1/build.log 2024-11-21 06:52:08.847133926 +0000 +++ b2/build.log 2024-11-21 06:54:29.300773446 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Nov 20 18:47:57 -12 2024 -I: pbuilder-time-stamp: 1732171677 +I: Current time: Thu Dec 25 03:15:10 +14 2025 +I: pbuilder-time-stamp: 1766582110 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -36,54 +36,86 @@ dpkg-source: info: applying syntax_warning.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/29285/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/128672/tmp/hooks/D01_modify_environment starting +debug: Running on ionos16-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 24 13:15 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/128672/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/128672/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=21 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='fea6d0b726784a9a88fa61eed532f0e0' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='29285' - PS1='# ' - PS2='> ' + INVOCATION_ID=3369170453d64fa486ab11ddec682c10 + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=128672 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.xW92ICgF/pbuilderrc_C3lr --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.xW92ICgF/b1 --logfile b1/build.log pairtools_1.1.0-1.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.xW92ICgF/pbuilderrc_Ow8Z --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.xW92ICgF/b2 --logfile b2/build.log pairtools_1.1.0-1.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos12-i386 6.1.0-27-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-27-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/29285/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/128672/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -371,7 +403,7 @@ Get: 220 http://deb.debian.org/debian trixie/main i386 python3-pysam i386 0.22.1+ds-2+b2 [4429 kB] Get: 221 http://deb.debian.org/debian trixie/main i386 python3-pytest all 8.3.3-1 [249 kB] Get: 222 http://deb.debian.org/debian trixie/main i386 python3-yaml i386 6.0.2-1+b1 [173 kB] -Fetched 141 MB in 3s (50.0 MB/s) +Fetched 141 MB in 2s (84.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19956 files and directories currently installed.) @@ -1095,8 +1127,8 @@ Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' -Local time is now: Thu Nov 21 06:48:44 UTC 2024. -Universal Time is now: Thu Nov 21 06:48:44 UTC 2024. +Local time is now: Wed Dec 24 13:15:40 UTC 2025. +Universal Time is now: Wed Dec 24 13:15:40 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... @@ -1300,7 +1332,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/pairtools-1.1.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pairtools_1.1.0-1_source.changes +I: user script /srv/workspace/pbuilder/128672/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/128672/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/pairtools-1.1.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../pairtools_1.1.0-1_source.changes dpkg-buildpackage: info: source package pairtools dpkg-buildpackage: info: source version 1.1.0-1 dpkg-buildpackage: info: source distribution unstable @@ -1319,9 +1355,9 @@ tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/pairtools-1.1.0/pairtools/lib/regions.pyx tree = Parsing.p_module(s, pxd, full_module_name) -Compiling /build/reproducible-path/pairtools-1.1.0/pairtools/lib/regions.pyx because it changed. -Compiling /build/reproducible-path/pairtools-1.1.0/pairtools/lib/dedup_cython.pyx because it changed. Compiling /build/reproducible-path/pairtools-1.1.0/pairtools/lib/parse_pysam.pyx because it changed. +Compiling /build/reproducible-path/pairtools-1.1.0/pairtools/lib/dedup_cython.pyx because it changed. +Compiling /build/reproducible-path/pairtools-1.1.0/pairtools/lib/regions.pyx because it changed. [1/3] Cythonizing /build/reproducible-path/pairtools-1.1.0/pairtools/lib/dedup_cython.pyx [2/3] Cythonizing /build/reproducible-path/pairtools-1.1.0/pairtools/lib/parse_pysam.pyx [3/3] Cythonizing /build/reproducible-path/pairtools-1.1.0/pairtools/lib/regions.pyx @@ -1345,9 +1381,9 @@ tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/pairtools-1.1.0/pairtools/lib/regions.pyx tree = Parsing.p_module(s, pxd, full_module_name) -Compiling /build/reproducible-path/pairtools-1.1.0/pairtools/lib/regions.pyx because it changed. -Compiling /build/reproducible-path/pairtools-1.1.0/pairtools/lib/dedup_cython.pyx because it changed. Compiling /build/reproducible-path/pairtools-1.1.0/pairtools/lib/parse_pysam.pyx because it changed. +Compiling /build/reproducible-path/pairtools-1.1.0/pairtools/lib/dedup_cython.pyx because it changed. +Compiling /build/reproducible-path/pairtools-1.1.0/pairtools/lib/regions.pyx because it changed. [1/3] Cythonizing /build/reproducible-path/pairtools-1.1.0/pairtools/lib/dedup_cython.pyx [2/3] Cythonizing /build/reproducible-path/pairtools-1.1.0/pairtools/lib/parse_pysam.pyx [3/3] Cythonizing /build/reproducible-path/pairtools-1.1.0/pairtools/lib/regions.pyx @@ -1357,44 +1393,44 @@ running build running build_py creating /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools -copying pairtools/__init__.py -> /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools copying pairtools/__main__.py -> /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools +copying pairtools/__init__.py -> /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools copying pairtools/_logging.py -> /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools -creating /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib -copying pairtools/lib/headerops.py -> /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib -copying pairtools/lib/stats.py -> /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib -copying pairtools/lib/restrict.py -> /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib -copying pairtools/lib/filterbycov.py -> /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib -copying pairtools/lib/dedup.py -> /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib -copying pairtools/lib/pairsam_format.py -> /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib -copying pairtools/lib/__init__.py -> /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib -copying pairtools/lib/fileio.py -> /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib -copying pairtools/lib/select.py -> /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib -copying pairtools/lib/phase.py -> /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib -copying pairtools/lib/parse.py -> /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib -copying pairtools/lib/pipes.py -> /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib -copying pairtools/lib/scaling.py -> /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib -copying pairtools/lib/pairsio.py -> /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib creating /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli +copying pairtools/cli/sort.py -> /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli +copying pairtools/cli/parse.py -> /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli +copying pairtools/cli/flip.py -> /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli +copying pairtools/cli/sample.py -> /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli +copying pairtools/cli/phase.py -> /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli +copying pairtools/cli/markasdup.py -> /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli +copying pairtools/cli/scaling.py -> /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli +copying pairtools/cli/__init__.py -> /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli copying pairtools/cli/stats.py -> /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli copying pairtools/cli/restrict.py -> /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli copying pairtools/cli/filterbycov.py -> /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli copying pairtools/cli/dedup.py -> /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli copying pairtools/cli/merge.py -> /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli copying pairtools/cli/parse2.py -> /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli -copying pairtools/cli/__init__.py -> /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli -copying pairtools/cli/flip.py -> /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli -copying pairtools/cli/header.py -> /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli copying pairtools/cli/select.py -> /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli -copying pairtools/cli/phase.py -> /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli +copying pairtools/cli/header.py -> /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli copying pairtools/cli/split.py -> /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli -copying pairtools/cli/markasdup.py -> /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli -copying pairtools/cli/parse.py -> /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli -copying pairtools/cli/sort.py -> /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli -copying pairtools/cli/scaling.py -> /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli -copying pairtools/cli/sample.py -> /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli +creating /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib +copying pairtools/lib/fileio.py -> /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib +copying pairtools/lib/pairsio.py -> /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib +copying pairtools/lib/pipes.py -> /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib +copying pairtools/lib/parse.py -> /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib +copying pairtools/lib/phase.py -> /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib +copying pairtools/lib/scaling.py -> /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib +copying pairtools/lib/__init__.py -> /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib +copying pairtools/lib/stats.py -> /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib +copying pairtools/lib/restrict.py -> /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib +copying pairtools/lib/filterbycov.py -> /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib +copying pairtools/lib/dedup.py -> /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib +copying pairtools/lib/pairsam_format.py -> /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib +copying pairtools/lib/select.py -> /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib +copying pairtools/lib/headerops.py -> /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib running build_ext -building 'pairtools.lib.regions' extension +building 'pairtools.lib.parse_pysam' extension creating build creating build/temp.linux-i686-cpython-312 creating build/temp.linux-i686-cpython-312/build @@ -1402,28 +1438,28 @@ creating build/temp.linux-i686-cpython-312/build/reproducible-path/pairtools-1.1.0 creating build/temp.linux-i686-cpython-312/build/reproducible-path/pairtools-1.1.0/pairtools creating build/temp.linux-i686-cpython-312/build/reproducible-path/pairtools-1.1.0/pairtools/lib -i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pairtools-1.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -c /build/reproducible-path/pairtools-1.1.0/pairtools/lib/regions.cpp -o build/temp.linux-i686-cpython-312/build/reproducible-path/pairtools-1.1.0/pairtools/lib/regions.o +i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pairtools-1.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipairtools/lib -I/usr/lib/python3/dist-packages/pysam -I/usr/lib/python3/dist-packages/pysam/include/samtools -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -c /build/reproducible-path/pairtools-1.1.0/pairtools/lib/parse_pysam.c -o build/temp.linux-i686-cpython-312/build/reproducible-path/pairtools-1.1.0/pairtools/lib/parse_pysam.o +i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pairtools-1.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-312/build/reproducible-path/pairtools-1.1.0/pairtools/lib/parse_pysam.o -L/usr/lib/i386-linux-gnu -o /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/parse_pysam.cpython-312-i386-linux-gnu.so /usr/lib/python3/dist-packages/pysam/libctabixproxies.cpython-312-i386-linux-gnu.so /usr/lib/python3/dist-packages/pysam/libcfaidx.cpython-312-i386-linux-gnu.so /usr/lib/python3/dist-packages/pysam/libcsamfile.cpython-312-i386-linux-gnu.so /usr/lib/python3/dist-packages/pysam/libcvcf.cpython-312-i386-linux-gnu.so /usr/lib/python3/dist-packages/pysam/libcbcf.cpython-312-i386-linux-gnu.so /usr/lib/python3/dist-packages/pysam/libctabix.cpython-312-i386-linux-gnu.so +building 'pairtools.lib.dedup_cython' extension +i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pairtools-1.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -c /build/reproducible-path/pairtools-1.1.0/pairtools/lib/dedup_cython.c -o build/temp.linux-i686-cpython-312/build/reproducible-path/pairtools-1.1.0/pairtools/lib/dedup_cython.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, - from /build/reproducible-path/pairtools-1.1.0/pairtools/lib/regions.cpp:1302: + from /build/reproducible-path/pairtools-1.1.0/pairtools/lib/dedup_cython.c:1240: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ -i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pairtools-1.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/reproducible-path/pairtools-1.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-312/build/reproducible-path/pairtools-1.1.0/pairtools/lib/regions.o -L/usr/lib/i386-linux-gnu -o /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/regions.cpython-312-i386-linux-gnu.so -building 'pairtools.lib.dedup_cython' extension -i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pairtools-1.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -c /build/reproducible-path/pairtools-1.1.0/pairtools/lib/dedup_cython.c -o build/temp.linux-i686-cpython-312/build/reproducible-path/pairtools-1.1.0/pairtools/lib/dedup_cython.o +i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pairtools-1.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-312/build/reproducible-path/pairtools-1.1.0/pairtools/lib/dedup_cython.o -L/usr/lib/i386-linux-gnu -o /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/dedup_cython.cpython-312-i386-linux-gnu.so +building 'pairtools.lib.regions' extension +i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pairtools-1.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -c /build/reproducible-path/pairtools-1.1.0/pairtools/lib/regions.cpp -o build/temp.linux-i686-cpython-312/build/reproducible-path/pairtools-1.1.0/pairtools/lib/regions.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, - from /build/reproducible-path/pairtools-1.1.0/pairtools/lib/dedup_cython.c:1240: + from /build/reproducible-path/pairtools-1.1.0/pairtools/lib/regions.cpp:1302: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ -i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pairtools-1.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-312/build/reproducible-path/pairtools-1.1.0/pairtools/lib/dedup_cython.o -L/usr/lib/i386-linux-gnu -o /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/dedup_cython.cpython-312-i386-linux-gnu.so -building 'pairtools.lib.parse_pysam' extension -i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pairtools-1.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipairtools/lib -I/usr/lib/python3/dist-packages/pysam -I/usr/lib/python3/dist-packages/pysam/include/samtools -I/usr/include/python3.12 -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/lib/python3/dist-packages/numpy/core/include -c /build/reproducible-path/pairtools-1.1.0/pairtools/lib/parse_pysam.c -o build/temp.linux-i686-cpython-312/build/reproducible-path/pairtools-1.1.0/pairtools/lib/parse_pysam.o -i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/pairtools-1.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-312/build/reproducible-path/pairtools-1.1.0/pairtools/lib/parse_pysam.o -L/usr/lib/i386-linux-gnu -o /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/parse_pysam.cpython-312-i386-linux-gnu.so /usr/lib/python3/dist-packages/pysam/libctabixproxies.cpython-312-i386-linux-gnu.so /usr/lib/python3/dist-packages/pysam/libcfaidx.cpython-312-i386-linux-gnu.so /usr/lib/python3/dist-packages/pysam/libcsamfile.cpython-312-i386-linux-gnu.so /usr/lib/python3/dist-packages/pysam/libcvcf.cpython-312-i386-linux-gnu.so /usr/lib/python3/dist-packages/pysam/libcbcf.cpython-312-i386-linux-gnu.so /usr/lib/python3/dist-packages/pysam/libctabix.cpython-312-i386-linux-gnu.so +i686-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/pairtools-1.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -ffile-prefix-map=/build/reproducible-path/pairtools-1.1.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-cpython-312/build/reproducible-path/pairtools-1.1.0/pairtools/lib/regions.o -L/usr/lib/i386-linux-gnu -o /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/regions.cpython-312-i386-linux-gnu.so debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/pairtools-1.1.0' dh_auto_test -- --system=custom --test-args="export CURPY={interpreter}; \ @@ -1492,7 +1528,7 @@ sum(list(n_cis_pairs_above_convergence_dist.values())) / norm_factor ) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html -=========== 31 passed, 1 deselected, 5 warnings in 63.88s (0:01:03) ============ +================ 31 passed, 1 deselected, 5 warnings in 35.62s ================= make[1]: Leaving directory '/build/reproducible-path/pairtools-1.1.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild @@ -1522,129 +1558,129 @@ creating /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib creating /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12 creating /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages -creating /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/.pytest_cache -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/.pytest_cache/CACHEDIR.TAG -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/.pytest_cache -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/.pytest_cache/README.md -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/.pytest_cache -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/.pytest_cache/.gitignore -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/.pytest_cache -creating /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/.pytest_cache/v -creating /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/.pytest_cache/v/cache/stepwise -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/.pytest_cache/v/cache/nodeids -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/mock.merged_chromsizes.stats -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/mock.merged_no_chromsizes.stats -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/mock.no_chromsizes.stats -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages creating /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools -creating /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/headerops.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/stats.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/restrict.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/filterbycov.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/dedup_cython.cpython-312-i386-linux-gnu.so -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/dedup.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/parse_pysam.cpython-312-i386-linux-gnu.so -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/pairsam_format.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/regions.cpython-312-i386-linux-gnu.so -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/__init__.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/fileio.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/select.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/phase.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/parse.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib -creating /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__pycache__ -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/__pycache__/filterbycov.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__pycache__ -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/__pycache__/pairsio.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__pycache__ -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/__pycache__/dedup.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__pycache__ -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/__pycache__/headerops.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__pycache__ -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/__pycache__/phase.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__pycache__ -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__pycache__ -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/__pycache__/stats.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__pycache__ -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/__pycache__/scaling.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__pycache__ -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/__pycache__/pipes.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__pycache__ -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/__pycache__/select.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__pycache__ -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/__pycache__/pairsam_format.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__pycache__ -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/__pycache__/restrict.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__pycache__ -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/__pycache__/parse.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__pycache__ -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/__pycache__/fileio.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__pycache__ -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/pipes.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/scaling.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/pairsio.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/__init__.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/__main__.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools creating /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli/sort.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli/parse.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli/flip.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli/sample.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli/phase.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli/markasdup.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli/scaling.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli/__init__.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli/stats.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli/restrict.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli/filterbycov.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli/dedup.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli/merge.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli/parse2.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli/__init__.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli/flip.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli/header.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli/select.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli/phase.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli/split.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli/markasdup.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli/parse.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli creating /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/filterbycov.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/sample.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/merge.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/dedup.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/phase.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/parse2.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/select.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/markasdup.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/header.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/stats.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/sort.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/phase.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/merge.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/parse.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/parse2.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/flip.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/scaling.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/select.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/sort.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/sample.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/restrict.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/parse.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/split.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli/sort.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli/scaling.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli/sample.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/_logging.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/dedup.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/header.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/stats.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli/__pycache__/filterbycov.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__pycache__ +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli/merge.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli/parse2.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli/select.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli/header.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/cli/split.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli +creating /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/fileio.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/pairsio.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/pipes.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/parse.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/phase.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/scaling.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/__init__.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/stats.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/restrict.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/parse_pysam.cpython-312-i386-linux-gnu.so -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/filterbycov.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/dedup.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib +creating /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__pycache__ +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/__pycache__/pairsio.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__pycache__ +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/__pycache__/select.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__pycache__ +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/__pycache__/fileio.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__pycache__ +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__pycache__ +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/__pycache__/phase.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__pycache__ +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/__pycache__/headerops.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__pycache__ +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/__pycache__/parse.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__pycache__ +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/__pycache__/scaling.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__pycache__ +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/__pycache__/pairsam_format.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__pycache__ +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/__pycache__/pipes.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__pycache__ +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/__pycache__/restrict.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__pycache__ +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/__pycache__/dedup.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__pycache__ +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/__pycache__/stats.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__pycache__ +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/__pycache__/filterbycov.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__pycache__ +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/pairsam_format.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/select.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/dedup_cython.cpython-312-i386-linux-gnu.so -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/regions.cpython-312-i386-linux-gnu.so -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/lib/headerops.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/__main__.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/__init__.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools creating /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/__pycache__ +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/__pycache__ copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/__pycache__/__main__.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/__pycache__ copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/__pycache__/_logging.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/__pycache__ -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/__pycache__ +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/pairtools/_logging.py -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools +creating /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/.pytest_cache +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/.pytest_cache/.gitignore -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/.pytest_cache +creating /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/.pytest_cache/v +creating /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/.pytest_cache/v/cache/stepwise -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/.pytest_cache/v/cache/nodeids -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/.pytest_cache/README.md -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/.pytest_cache +copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/.pytest_cache/CACHEDIR.TAG -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/.pytest_cache copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/mock.stats -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/mock.no_chromsizes.stats -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages -copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/mock.merged_no_chromsizes.stats -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages copying /build/reproducible-path/pairtools-1.1.0/.pybuild/cpython3_3.12/build/mock.merged_mixed.stats -> /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages -byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/headerops.py to headerops.cpython-312.pyc -byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/stats.py to stats.cpython-312.pyc -byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/restrict.py to restrict.cpython-312.pyc -byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/filterbycov.py to filterbycov.cpython-312.pyc -byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/dedup.py to dedup.cpython-312.pyc -byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/pairsam_format.py to pairsam_format.cpython-312.pyc -byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/fileio.py to fileio.cpython-312.pyc -byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/select.py to select.cpython-312.pyc -byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/phase.py to phase.cpython-312.pyc -byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/parse.py to parse.cpython-312.pyc -byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/pipes.py to pipes.cpython-312.pyc -byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/scaling.py to scaling.cpython-312.pyc -byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/pairsio.py to pairsio.cpython-312.pyc -byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/__main__.py to __main__.cpython-312.pyc +byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/sort.py to sort.cpython-312.pyc +byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/parse.py to parse.cpython-312.pyc +byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/flip.py to flip.cpython-312.pyc +byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/sample.py to sample.cpython-312.pyc +byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/phase.py to phase.cpython-312.pyc +byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/markasdup.py to markasdup.cpython-312.pyc +byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/scaling.py to scaling.cpython-312.pyc +byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/stats.py to stats.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/restrict.py to restrict.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/filterbycov.py to filterbycov.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/dedup.py to dedup.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/merge.py to merge.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/parse2.py to parse2.cpython-312.pyc -byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/flip.py to flip.cpython-312.pyc -byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/header.py to header.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/select.py to select.cpython-312.pyc -byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/phase.py to phase.cpython-312.pyc +byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/header.py to header.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/split.py to split.cpython-312.pyc -byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/markasdup.py to markasdup.cpython-312.pyc -byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/parse.py to parse.cpython-312.pyc -byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/sort.py to sort.cpython-312.pyc -byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/scaling.py to scaling.cpython-312.pyc -byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/cli/sample.py to sample.cpython-312.pyc +byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/fileio.py to fileio.cpython-312.pyc +byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/pairsio.py to pairsio.cpython-312.pyc +byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/pipes.py to pipes.cpython-312.pyc +byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/parse.py to parse.cpython-312.pyc +byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/phase.py to phase.cpython-312.pyc +byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/scaling.py to scaling.cpython-312.pyc +byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/stats.py to stats.cpython-312.pyc +byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/restrict.py to restrict.cpython-312.pyc +byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/filterbycov.py to filterbycov.cpython-312.pyc +byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/dedup.py to dedup.cpython-312.pyc +byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/pairsam_format.py to pairsam_format.cpython-312.pyc +byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/select.py to select.cpython-312.pyc +byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/lib/headerops.py to headerops.cpython-312.pyc +byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/__main__.py to __main__.cpython-312.pyc +byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/pairtools-1.1.0/debian/python3-pairtools/usr/lib/python3.12/dist-packages/pairtools/_logging.py to _logging.cpython-312.pyc running install_egg_info running egg_info @@ -1698,9 +1734,9 @@ dpkg-gencontrol: warning: package python3-pairtools-examples: substitution variable ${python3:Depends} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild -dpkg-deb: building package 'python3-pairtools-examples' in '../python3-pairtools-examples_1.1.0-1_i386.deb'. -dpkg-deb: building package 'python3-pairtools-dbgsym' in '../python3-pairtools-dbgsym_1.1.0-1_i386.deb'. dpkg-deb: building package 'python3-pairtools' in '../python3-pairtools_1.1.0-1_i386.deb'. +dpkg-deb: building package 'python3-pairtools-dbgsym' in '../python3-pairtools-dbgsym_1.1.0-1_i386.deb'. +dpkg-deb: building package 'python3-pairtools-examples' in '../python3-pairtools-examples_1.1.0-1_i386.deb'. dpkg-genbuildinfo --build=binary -O../pairtools_1.1.0-1_i386.buildinfo dpkg-genchanges --build=binary -O../pairtools_1.1.0-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1708,12 +1744,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/128672/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/128672/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/29285 and its subdirectories -I: Current time: Wed Nov 20 18:52:08 -12 2024 -I: pbuilder-time-stamp: 1732171928 +I: removing directory /srv/workspace/pbuilder/128672 and its subdirectories +I: Current time: Thu Dec 25 03:17:28 +14 2025 +I: pbuilder-time-stamp: 1766582248