Diff of the two buildlogs: -- --- b1/build.log 2024-12-16 00:33:45.719566201 +0000 +++ b2/build.log 2024-12-16 00:48:33.067120821 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Jan 17 18:47:29 -12 2026 -I: pbuilder-time-stamp: 1768718849 +I: Current time: Mon Dec 16 14:33:48 +14 2024 +I: pbuilder-time-stamp: 1734309228 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -35,53 +35,86 @@ dpkg-source: info: applying remove-inchi.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/21993/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/37794/tmp/hooks/D01_modify_environment starting +debug: Running on ionos12-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 16 00:34 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/37794/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/37794/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=6 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=10 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='2eb4fa8f17ee44ddad9b2b43bf0d766b' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='21993' - PS1='# ' - PS2='> ' + INVOCATION_ID=f208210ede3e4694b2ae505d9465b8db + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=37794 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.yUfA2xQh/pbuilderrc_2TES --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.yUfA2xQh/b1 --logfile b1/build.log oscar4_5.2.0+dfsg-2.dsc' - SUDO_GID='111' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.yUfA2xQh/pbuilderrc_VVXv --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.yUfA2xQh/b2 --logfile b2/build.log oscar4_5.2.0+dfsg-2.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux infom08-i386 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/21993/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/37794/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -451,7 +484,7 @@ Get: 304 http://deb.debian.org/debian trixie/main i386 maven-repo-helper all 1.11 [142 kB] Get: 305 http://deb.debian.org/debian trixie/main i386 unzip i386 6.0-28 [166 kB] Get: 306 http://deb.debian.org/debian trixie/main i386 maven-debian-helper all 2.6.6 [108 kB] -Fetched 367 MB in 4s (90.8 MB/s) +Fetched 367 MB in 8s (48.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libapparmor1:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19952 files and directories currently installed.) @@ -1899,7 +1932,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/oscar4-5.2.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../oscar4_5.2.0+dfsg-2_source.changes +I: user script /srv/workspace/pbuilder/37794/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/37794/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/oscar4-5.2.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../oscar4_5.2.0+dfsg-2_source.changes dpkg-buildpackage: info: source package oscar4 dpkg-buildpackage: info: source version 5.2.0+dfsg-2 dpkg-buildpackage: info: source distribution unstable @@ -2528,24 +2565,24 @@ [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary for oscar4-parent 5.2.0: [INFO] -[INFO] oscar4-parent ...................................... SUCCESS [ 0.122 s] -[INFO] oscar4-core ........................................ SUCCESS [ 1.772 s] -[INFO] Chemical Name Dictionaries ......................... SUCCESS [ 0.720 s] -[INFO] oscar4-obo ......................................... SUCCESS [ 1.036 s] -[INFO] oscar4-tokenizer ................................... SUCCESS [ 0.268 s] -[INFO] oscar4-recogniser-core ............................. SUCCESS [ 0.716 s] -[INFO] oscar4-memmrecogniser .............................. SUCCESS [ 0.613 s] -[INFO] oscar4-patternrecogniser ........................... SUCCESS [ 0.162 s] -[INFO] oscar4-opsin ....................................... SUCCESS [ 0.112 s] -[INFO] oscar4-api ......................................... SUCCESS [ 0.136 s] -[INFO] oscar4-preprocessor ................................ SUCCESS [ 0.080 s] -[INFO] oscar4-formatter ................................... SUCCESS [ 0.047 s] -[INFO] oscar4-data ........................................ SUCCESS [ 0.140 s] +[INFO] oscar4-parent ...................................... SUCCESS [ 0.317 s] +[INFO] oscar4-core ........................................ SUCCESS [ 4.676 s] +[INFO] Chemical Name Dictionaries ......................... SUCCESS [ 1.537 s] +[INFO] oscar4-obo ......................................... SUCCESS [ 2.162 s] +[INFO] oscar4-tokenizer ................................... SUCCESS [ 0.612 s] +[INFO] oscar4-recogniser-core ............................. SUCCESS [ 1.647 s] +[INFO] oscar4-memmrecogniser .............................. SUCCESS [ 1.267 s] +[INFO] oscar4-patternrecogniser ........................... SUCCESS [ 0.402 s] +[INFO] oscar4-opsin ....................................... SUCCESS [ 0.237 s] +[INFO] oscar4-api ......................................... SUCCESS [ 0.331 s] +[INFO] oscar4-preprocessor ................................ SUCCESS [ 0.188 s] +[INFO] oscar4-formatter ................................... SUCCESS [ 0.108 s] +[INFO] oscar4-data ........................................ SUCCESS [ 0.324 s] [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 6.041 s -[INFO] Finished at: 2026-01-18T06:48:25Z +[INFO] Total time: 14.121 s +[INFO] Finished at: 2024-12-16T00:36:02Z [INFO] ------------------------------------------------------------------------ dh_auto_test /usr/lib/jvm/default-java/bin/java -noverify -cp /usr/share/maven/boot/plexus-classworlds-2.x.jar -Dmaven.home=/usr/share/maven -Dmaven.multiModuleProjectDirectory=/build/reproducible-path/oscar4-5.2.0\+dfsg -Dclassworlds.conf=/etc/maven/m2-debian.conf org.codehaus.plexus.classworlds.launcher.Launcher -s/etc/maven/settings-debian.xml -Ddebian.dir=/build/reproducible-path/oscar4-5.2.0\+dfsg/debian -Dmaven.repo.local=/build/reproducible-path/oscar4-5.2.0\+dfsg/debian/maven-repo --batch-mode test @@ -2601,37 +2638,37 @@ [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- -[INFO] Running uk.ac.cam.ch.wwmm.oscar.xmltools.XOMToolsTest -[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.044 s - in uk.ac.cam.ch.wwmm.oscar.xmltools.XOMToolsTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.types.BioTypeTest -[INFO] Tests run: 14, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscar.types.BioTypeTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.types.BioTagTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscar.types.BioTagTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.types.NamedEntityTypeTest -[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscar.types.NamedEntityTypeTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.util.CacheMapTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscar.util.CacheMapTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.document.TokenSequenceTest -[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscar.document.TokenSequenceTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.document.NamedEntitityTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscar.document.NamedEntitityTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.document.TokenTest -[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscar.document.TokenTest [INFO] Running uk.ac.cam.ch.wwmm.oscar.normalize.NormalizingReaderTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscar.normalize.NormalizingReaderTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.065 s - in uk.ac.cam.ch.wwmm.oscar.normalize.NormalizingReaderTest [INFO] Running uk.ac.cam.ch.wwmm.oscar.normalize.NormalizerTest -[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscar.normalize.NormalizerTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.tools.StandoffTableTest -[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.038 s - in uk.ac.cam.ch.wwmm.oscar.tools.StandoffTableTest +[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscar.normalize.NormalizerTest [INFO] Running uk.ac.cam.ch.wwmm.oscar.tools.StringToolsTest -[INFO] Tests run: 17, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.008 s - in uk.ac.cam.ch.wwmm.oscar.tools.StringToolsTest +[INFO] Tests run: 17, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 s - in uk.ac.cam.ch.wwmm.oscar.tools.StringToolsTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.tools.StandoffTableTest +[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.085 s - in uk.ac.cam.ch.wwmm.oscar.tools.StandoffTableTest [INFO] Running uk.ac.cam.ch.wwmm.oscar.tools.ResourceGetterTest -[WARNING] Tests run: 9, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.021 s - in uk.ac.cam.ch.wwmm.oscar.tools.ResourceGetterTest +[WARNING] Tests run: 9, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.039 s - in uk.ac.cam.ch.wwmm.oscar.tools.ResourceGetterTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.xmltools.XOMToolsTest +[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in uk.ac.cam.ch.wwmm.oscar.xmltools.XOMToolsTest [INFO] Running uk.ac.cam.ch.wwmm.oscar.terms.TermSetsTest SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". SLF4J: Defaulting to no-operation (NOP) logger implementation SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. -[INFO] Tests run: 23, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.155 s - in uk.ac.cam.ch.wwmm.oscar.terms.TermSetsTest +[INFO] Tests run: 23, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.398 s - in uk.ac.cam.ch.wwmm.oscar.terms.TermSetsTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.types.BioTypeTest +[INFO] Tests run: 14, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscar.types.BioTypeTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.types.NamedEntityTypeTest +[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscar.types.NamedEntityTypeTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.types.BioTagTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscar.types.BioTagTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.document.TokenSequenceTest +[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 s - in uk.ac.cam.ch.wwmm.oscar.document.TokenSequenceTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.document.TokenTest +[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscar.document.TokenTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.document.NamedEntitityTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscar.document.NamedEntitityTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.util.CacheMapTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscar.util.CacheMapTest [INFO] [INFO] Results: [INFO] @@ -2662,27 +2699,27 @@ [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- -[INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.core.ImmutableChemNameDictTest -[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.096 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.core.ImmutableChemNameDictTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.core.ChemNameDictRegistryTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.dictionaries.ChEBIDictionaryTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.564 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.dictionaries.ChEBIDictionaryTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.dictionaries.DefaultDictionaryTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.044 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.dictionaries.DefaultDictionaryTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.dictionaries.PolymerDictionaryTest SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". SLF4J: Defaulting to no-operation (NOP) logger implementation SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. -[INFO] Tests run: 18, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.436 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.core.ChemNameDictRegistryTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.core.MutableChemNameDictTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.core.MutableChemNameDictTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.entities.ResolvedNamedEntityTest -[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.entities.ResolvedNamedEntityTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.entities.ChemicalStructureTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.entities.ChemicalStructureTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.dictionaries.DefaultDictionaryTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.009 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.dictionaries.DefaultDictionaryTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.dictionaries.PolymerDictionaryTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.dictionaries.PolymerDictionaryTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.dictionaries.ChEBIDictionaryTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.dictionaries.ChEBIDictionaryTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.024 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.dictionaries.PolymerDictionaryTest [INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.tools.ResourceGetterTest [INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.tools.ResourceGetterTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.entities.ResolvedNamedEntityTest +[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.007 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.entities.ResolvedNamedEntityTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.entities.ChemicalStructureTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.entities.ChemicalStructureTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.core.MutableChemNameDictTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.core.MutableChemNameDictTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.core.ChemNameDictRegistryTest +[INFO] Tests run: 18, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.055 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.core.ChemNameDictRegistryTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.core.ImmutableChemNameDictTest +[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.core.ImmutableChemNameDictTest [INFO] [INFO] Results: [INFO] @@ -2714,16 +2751,16 @@ [INFO] T E S T S [INFO] ------------------------------------------------------- [INFO] Running uk.ac.cam.ch.wwmm.oscar.ont.TermsFileReaderTest -[INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.482 s - in uk.ac.cam.ch.wwmm.oscar.ont.TermsFileReaderTest +[INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.274 s - in uk.ac.cam.ch.wwmm.oscar.ont.TermsFileReaderTest [INFO] Running uk.ac.cam.ch.wwmm.oscar.ont.EquivalentTermSetTest -[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscar.ont.EquivalentTermSetTest +[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscar.ont.EquivalentTermSetTest [INFO] Running uk.ac.cam.ch.wwmm.oscar.ont.OntologyTermsTest SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". SLF4J: Defaulting to no-operation (NOP) logger implementation SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. -[INFO] Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.337 s - in uk.ac.cam.ch.wwmm.oscar.ont.OntologyTermsTest +[INFO] Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.87 s - in uk.ac.cam.ch.wwmm.oscar.ont.OntologyTermsTest [INFO] Running uk.ac.cam.ch.wwmm.oscar.obo.OBOOntologyTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 9.942 s - in uk.ac.cam.ch.wwmm.oscar.obo.OBOOntologyTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 24.214 s - in uk.ac.cam.ch.wwmm.oscar.obo.OBOOntologyTest [INFO] [INFO] Results: [INFO] @@ -2754,19 +2791,19 @@ [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- -[INFO] Running uk.ac.cam.ch.wwmm.oscartokeniser.TokeniserTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.document.AdditionalTokenSequenceTest SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". SLF4J: Defaulting to no-operation (NOP) logger implementation SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. -[WARNING] Tests run: 35, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.694 s - in uk.ac.cam.ch.wwmm.oscartokeniser.TokeniserTest -[INFO] Running uk.ac.cam.ch.wwmm.oscartokeniser.HyphenTokeniserTest -[INFO] Tests run: 19, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 s - in uk.ac.cam.ch.wwmm.oscartokeniser.HyphenTokeniserTest -[INFO] Running uk.ac.cam.ch.wwmm.oscartokeniser.TokenClassifierTest -[INFO] Tests run: 19, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.027 s - in uk.ac.cam.ch.wwmm.oscartokeniser.TokenClassifierTest +[INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.857 s - in uk.ac.cam.ch.wwmm.oscar.document.AdditionalTokenSequenceTest [INFO] Running uk.ac.cam.ch.wwmm.oscar.document.ProcessingDocumentFactoryTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 s - in uk.ac.cam.ch.wwmm.oscar.document.ProcessingDocumentFactoryTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.document.AdditionalTokenSequenceTest -[INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 s - in uk.ac.cam.ch.wwmm.oscar.document.AdditionalTokenSequenceTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscar.document.ProcessingDocumentFactoryTest +[INFO] Running uk.ac.cam.ch.wwmm.oscartokeniser.TokeniserTest +[WARNING] Tests run: 35, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.896 s - in uk.ac.cam.ch.wwmm.oscartokeniser.TokeniserTest +[INFO] Running uk.ac.cam.ch.wwmm.oscartokeniser.TokenClassifierTest +[INFO] Tests run: 19, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.06 s - in uk.ac.cam.ch.wwmm.oscartokeniser.TokenClassifierTest +[INFO] Running uk.ac.cam.ch.wwmm.oscartokeniser.HyphenTokeniserTest +[INFO] Tests run: 19, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.012 s - in uk.ac.cam.ch.wwmm.oscartokeniser.HyphenTokeniserTest [INFO] [INFO] Results: [INFO] @@ -2801,25 +2838,25 @@ SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". SLF4J: Defaulting to no-operation (NOP) logger implementation SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. -[WARNING] Tests run: 11, Failures: 0, Errors: 0, Skipped: 3, Time elapsed: 11.245 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.tokenanalysis.NGramBuilderTest +[WARNING] Tests run: 11, Failures: 0, Errors: 0, Skipped: 3, Time elapsed: 37.428 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.tokenanalysis.NGramBuilderTest [INFO] Running uk.ac.cam.ch.wwmm.oscarrecogniser.tokenanalysis.PrefixFinderTest -[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.tokenanalysis.PrefixFinderTest +[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.tokenanalysis.PrefixFinderTest [INFO] Running uk.ac.cam.ch.wwmm.oscarrecogniser.saf.StandoffResolverTest -[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.saf.StandoffResolverTest -[INFO] Running uk.ac.cam.ch.wwmm.oscarrecogniser.finder.DFASupplementaryTermFinderTest -[WARNING] Tests run: 6, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.116 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.finder.DFASupplementaryTermFinderTest +[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.saf.StandoffResolverTest [INFO] Running uk.ac.cam.ch.wwmm.oscarrecogniser.finder.DFAONTCPRFinderTest -[INFO] Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.296 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.finder.DFAONTCPRFinderTest +[INFO] Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 4.873 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.finder.DFAONTCPRFinderTest [INFO] Running uk.ac.cam.ch.wwmm.oscarrecogniser.finder.TermMapsTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.finder.TermMapsTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.finder.TermMapsTest +[INFO] Running uk.ac.cam.ch.wwmm.oscarrecogniser.finder.DFASupplementaryTermFinderTest +[WARNING] Tests run: 6, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.finder.DFASupplementaryTermFinderTest [INFO] Running uk.ac.cam.ch.wwmm.oscarrecogniser.finder.AutomatonStateTest [INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.finder.AutomatonStateTest [INFO] Running uk.ac.cam.ch.wwmm.oscarrecogniser.finder.DFAFinderTest -[WARNING] Tests run: 8, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 3.366 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.finder.DFAFinderTest -[INFO] Running uk.ac.cam.ch.wwmm.oscarrecogniser.extractedtrainingdata.ExtractedTrainingDataTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.129 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.extractedtrainingdata.ExtractedTrainingDataTest +[WARNING] Tests run: 8, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 8.767 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.finder.DFAFinderTest [INFO] Running uk.ac.cam.ch.wwmm.oscarrecogniser.regex.RegexRecogniserTest -[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.regex.RegexRecogniserTest +[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.regex.RegexRecogniserTest +[INFO] Running uk.ac.cam.ch.wwmm.oscarrecogniser.extractedtrainingdata.ExtractedTrainingDataTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.309 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.extractedtrainingdata.ExtractedTrainingDataTest [INFO] [INFO] Results: [INFO] @@ -2850,23 +2887,23 @@ [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- -[INFO] Running uk.ac.cam.ch.wwmm.oscarMEMM.rescorer.ProbabilityConvertorTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.04 s - in uk.ac.cam.ch.wwmm.oscarMEMM.rescorer.ProbabilityConvertorTest [INFO] Running uk.ac.cam.ch.wwmm.oscarMEMM.memm.MEMMModelTest -[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.674 s - in uk.ac.cam.ch.wwmm.oscarMEMM.memm.MEMMModelTest -[INFO] Running uk.ac.cam.ch.wwmm.oscarMEMM.Oscar4RegressionTest +[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.866 s - in uk.ac.cam.ch.wwmm.oscarMEMM.memm.MEMMModelTest +[INFO] Running uk.ac.cam.ch.wwmm.oscarMEMM.models.ChemPapersModelTest SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". SLF4J: Defaulting to no-operation (NOP) logger implementation SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. -[INFO] Tests run: 13, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 4.391 s - in uk.ac.cam.ch.wwmm.oscarMEMM.Oscar4RegressionTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 4.883 s - in uk.ac.cam.ch.wwmm.oscarMEMM.models.ChemPapersModelTest +[INFO] Running uk.ac.cam.ch.wwmm.oscarMEMM.models.PubMedModelTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 3 s - in uk.ac.cam.ch.wwmm.oscarMEMM.models.PubMedModelTest +[INFO] Running uk.ac.cam.ch.wwmm.oscarMEMM.rescorer.ProbabilityConvertorTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscarMEMM.rescorer.ProbabilityConvertorTest [INFO] Running uk.ac.cam.ch.wwmm.oscarMEMM.MEMMRecogniserTest -[INFO] Tests run: 31, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 23.753 s - in uk.ac.cam.ch.wwmm.oscarMEMM.MEMMRecogniserTest +[INFO] Tests run: 31, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 58.233 s - in uk.ac.cam.ch.wwmm.oscarMEMM.MEMMRecogniserTest +[INFO] Running uk.ac.cam.ch.wwmm.oscarMEMM.Oscar4RegressionTest +[INFO] Tests run: 13, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 7.027 s - in uk.ac.cam.ch.wwmm.oscarMEMM.Oscar4RegressionTest [INFO] Running uk.ac.cam.ch.wwmm.oscarMEMM.ResourceGetterTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscarMEMM.ResourceGetterTest -[INFO] Running uk.ac.cam.ch.wwmm.oscarMEMM.models.PubMedModelTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.097 s - in uk.ac.cam.ch.wwmm.oscarMEMM.models.PubMedModelTest -[INFO] Running uk.ac.cam.ch.wwmm.oscarMEMM.models.ChemPapersModelTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1 s - in uk.ac.cam.ch.wwmm.oscarMEMM.models.ChemPapersModelTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscarMEMM.ResourceGetterTest [INFO] [INFO] Results: [INFO] @@ -2901,7 +2938,7 @@ SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". SLF4J: Defaulting to no-operation (NOP) logger implementation SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. -[INFO] Tests run: 22, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 45.973 s - in uk.ac.cam.ch.wwmm.oscarpattern.PatternRecogniserTest +[INFO] Tests run: 22, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 112.213 s - in uk.ac.cam.ch.wwmm.oscarpattern.PatternRecogniserTest [INFO] [INFO] Results: [INFO] @@ -2933,12 +2970,12 @@ [INFO] T E S T S [INFO] ------------------------------------------------------- [INFO] Running uk.ac.cam.ch.wwmm.oscar.opsin.OpsinDictionaryTest -[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.65 s - in uk.ac.cam.ch.wwmm.oscar.opsin.OpsinDictionaryTest +[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.793 s - in uk.ac.cam.ch.wwmm.oscar.opsin.OpsinDictionaryTest [INFO] Running uk.ac.cam.ch.wwmm.oscar.opsin.OpsinResolutionTest SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". SLF4J: Defaulting to no-operation (NOP) logger implementation SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.427 s - in uk.ac.cam.ch.wwmm.oscar.opsin.OpsinResolutionTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.2 s - in uk.ac.cam.ch.wwmm.oscar.opsin.OpsinResolutionTest [INFO] [INFO] Results: [INFO] @@ -2973,7 +3010,7 @@ SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". SLF4J: Defaulting to no-operation (NOP) logger implementation SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. -[INFO] Tests run: 18, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 39.536 s - in uk.ac.cam.ch.wwmm.oscar.OscarTest +[INFO] Tests run: 18, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 100.293 s - in uk.ac.cam.ch.wwmm.oscar.OscarTest [INFO] [INFO] Results: [INFO] @@ -3005,7 +3042,7 @@ [INFO] T E S T S [INFO] ------------------------------------------------------- [INFO] Running uk.ac.cam.ch.wwmm.oscarpreprocessor.InputAnalyzerTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.049 s - in uk.ac.cam.ch.wwmm.oscarpreprocessor.InputAnalyzerTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.113 s - in uk.ac.cam.ch.wwmm.oscarpreprocessor.InputAnalyzerTest [INFO] [INFO] Results: [INFO] @@ -3058,19 +3095,19 @@ [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- -[INFO] Running uk.ac.cam.ch.wwmm.oscardata.DataParserTest +[INFO] Running uk.ac.cam.ch.wwmm.oscardata.RegexValidationTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.286 s - in uk.ac.cam.ch.wwmm.oscardata.RegexValidationTest +[INFO] Running uk.ac.cam.ch.wwmm.oscardata.DataAnnotationTest SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". SLF4J: Defaulting to no-operation (NOP) logger implementation SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. -[INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.895 s - in uk.ac.cam.ch.wwmm.oscardata.DataParserTest -[INFO] Running uk.ac.cam.ch.wwmm.oscardata.RegexValidationTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.011 s - in uk.ac.cam.ch.wwmm.oscardata.RegexValidationTest -[INFO] Running uk.ac.cam.ch.wwmm.oscardata.RPNodeTest -[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 s - in uk.ac.cam.ch.wwmm.oscardata.RPNodeTest -[INFO] Running uk.ac.cam.ch.wwmm.oscardata.DataAnnotationTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.018 s - in uk.ac.cam.ch.wwmm.oscardata.DataAnnotationTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.697 s - in uk.ac.cam.ch.wwmm.oscardata.DataAnnotationTest [INFO] Running uk.ac.cam.ch.wwmm.oscardata.OscarDataTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 s - in uk.ac.cam.ch.wwmm.oscardata.OscarDataTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 s - in uk.ac.cam.ch.wwmm.oscardata.OscarDataTest +[INFO] Running uk.ac.cam.ch.wwmm.oscardata.RPNodeTest +[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscardata.RPNodeTest +[INFO] Running uk.ac.cam.ch.wwmm.oscardata.DataParserTest +[INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.188 s - in uk.ac.cam.ch.wwmm.oscardata.DataParserTest [INFO] [INFO] Results: [INFO] @@ -3079,24 +3116,24 @@ [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary for oscar4-parent 5.2.0: [INFO] -[INFO] oscar4-parent ...................................... SUCCESS [ 0.133 s] -[INFO] oscar4-core ........................................ SUCCESS [ 31.303 s] -[INFO] Chemical Name Dictionaries ......................... SUCCESS [ 31.120 s] -[INFO] oscar4-obo ......................................... SUCCESS [ 41.405 s] -[INFO] oscar4-tokenizer ................................... SUCCESS [ 31.303 s] -[INFO] oscar4-recogniser-core ............................. SUCCESS [ 47.794 s] -[INFO] oscar4-memmrecogniser .............................. SUCCESS [01:01 min] -[INFO] oscar4-patternrecogniser ........................... SUCCESS [01:16 min] -[INFO] oscar4-opsin ....................................... SUCCESS [ 31.607 s] -[INFO] oscar4-api ......................................... SUCCESS [01:10 min] -[INFO] oscar4-preprocessor ................................ SUCCESS [ 30.548 s] -[INFO] oscar4-formatter ................................... SUCCESS [ 0.012 s] -[INFO] oscar4-data ........................................ SUCCESS [ 31.471 s] +[INFO] oscar4-parent ...................................... SUCCESS [ 0.261 s] +[INFO] oscar4-core ........................................ SUCCESS [ 32.326 s] +[INFO] Chemical Name Dictionaries ......................... SUCCESS [ 32.590 s] +[INFO] oscar4-obo ......................................... SUCCESS [ 57.516 s] +[INFO] oscar4-tokenizer ................................... SUCCESS [ 32.954 s] +[INFO] oscar4-recogniser-core ............................. SUCCESS [01:25 min] +[INFO] oscar4-memmrecogniser .............................. SUCCESS [01:46 min] +[INFO] oscar4-patternrecogniser ........................... SUCCESS [02:23 min] +[INFO] oscar4-opsin ....................................... SUCCESS [ 34.025 s] +[INFO] oscar4-api ......................................... SUCCESS [02:11 min] +[INFO] oscar4-preprocessor ................................ SUCCESS [ 31.058 s] +[INFO] oscar4-formatter ................................... SUCCESS [ 0.088 s] +[INFO] oscar4-data ........................................ SUCCESS [ 33.122 s] [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 08:05 min -[INFO] Finished at: 2026-01-18T06:56:31Z +[INFO] Total time: 12:00 min +[INFO] Finished at: 2024-12-16T00:48:04Z [INFO] ------------------------------------------------------------------------ create-stamp debian/debhelper-build-stamp dh_prep @@ -3292,24 +3329,24 @@ [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary for oscar4-parent 5.2.0: [INFO] -[INFO] oscar4-parent ...................................... SUCCESS [ 0.230 s] -[INFO] oscar4-core ........................................ SUCCESS [ 0.048 s] -[INFO] Chemical Name Dictionaries ......................... SUCCESS [ 0.024 s] -[INFO] oscar4-obo ......................................... SUCCESS [ 0.033 s] -[INFO] oscar4-tokenizer ................................... SUCCESS [ 0.020 s] -[INFO] oscar4-recogniser-core ............................. SUCCESS [ 0.022 s] -[INFO] oscar4-memmrecogniser .............................. SUCCESS [ 0.022 s] -[INFO] oscar4-patternrecogniser ........................... SUCCESS [ 0.019 s] -[INFO] oscar4-opsin ....................................... SUCCESS [ 0.019 s] -[INFO] oscar4-api ......................................... SUCCESS [ 0.019 s] -[INFO] oscar4-preprocessor ................................ SUCCESS [ 0.018 s] -[INFO] oscar4-formatter ................................... SUCCESS [ 0.018 s] -[INFO] oscar4-data ........................................ SUCCESS [ 0.019 s] +[INFO] oscar4-parent ...................................... SUCCESS [ 0.671 s] +[INFO] oscar4-core ........................................ SUCCESS [ 0.080 s] +[INFO] Chemical Name Dictionaries ......................... SUCCESS [ 0.067 s] +[INFO] oscar4-obo ......................................... SUCCESS [ 0.119 s] +[INFO] oscar4-tokenizer ................................... SUCCESS [ 0.061 s] +[INFO] oscar4-recogniser-core ............................. SUCCESS [ 0.069 s] +[INFO] oscar4-memmrecogniser .............................. SUCCESS [ 0.063 s] +[INFO] oscar4-patternrecogniser ........................... SUCCESS [ 0.051 s] +[INFO] oscar4-opsin ....................................... SUCCESS [ 0.051 s] +[INFO] oscar4-api ......................................... SUCCESS [ 0.048 s] +[INFO] oscar4-preprocessor ................................ SUCCESS [ 0.041 s] +[INFO] oscar4-formatter ................................... SUCCESS [ 0.044 s] +[INFO] oscar4-data ........................................ SUCCESS [ 0.043 s] [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 0.638 s -[INFO] Finished at: 2026-01-18T06:56:32Z +[INFO] Total time: 1.794 s +[INFO] Finished at: 2024-12-16T00:48:09Z [INFO] ------------------------------------------------------------------------ mh_resolve_dependencies --non-interactive --offline --build -pliboscar4-java --base-directory=/build/reproducible-path/oscar4-5.2.0\+dfsg --non-explore Analysing pom.xml... @@ -3359,12 +3396,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/37794/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/37794/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/21993 and its subdirectories -I: Current time: Sat Jan 17 18:56:44 -12 2026 -I: pbuilder-time-stamp: 1768719404 +I: removing directory /srv/workspace/pbuilder/37794 and its subdirectories +I: Current time: Mon Dec 16 14:48:32 +14 2024 +I: pbuilder-time-stamp: 1734310112