Diff of the two buildlogs: -- --- b1/build.log 2024-12-01 19:02:42.733592099 +0000 +++ b2/build.log 2024-12-01 19:03:23.619751422 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Dec 1 07:02:01 -12 2024 -I: pbuilder-time-stamp: 1733079721 +I: Current time: Sun Jan 4 15:25:44 +14 2026 +I: pbuilder-time-stamp: 1767489944 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -29,53 +29,85 @@ dpkg-source: info: applying SyntaxWarning.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/17553/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/21747/tmp/hooks/D01_modify_environment starting +debug: Running on infom08-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jan 4 01:25 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/21747/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/21747/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=6 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=5 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='2ed6df65e6194441878813a3900098a7' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='17553' - PS1='# ' - PS2='> ' + INVOCATION_ID=72dff342514e4c609adf5a863a62fd4a + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=21747 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.c4oAhfja/pbuilderrc_WkFe --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.c4oAhfja/b1 --logfile b1/build.log optimir_1.2-2.dsc' - SUDO_GID='111' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.c4oAhfja/pbuilderrc_9KD7 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.c4oAhfja/b2 --logfile b2/build.log optimir_1.2-2.dsc' + SUDO_GID=111 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' I: uname -a - Linux infom07-i386 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/17553/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/21747/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -179,7 +211,7 @@ Get: 60 http://deb.debian.org/debian trixie/main i386 python3-zipp all 3.21.0-1 [10.6 kB] Get: 61 http://deb.debian.org/debian trixie/main i386 python3-setuptools all 74.1.2-2 [736 kB] Get: 62 http://deb.debian.org/debian trixie/main i386 dh-python all 6.20241024 [109 kB] -Fetched 28.6 MB in 0s (68.7 MB/s) +Fetched 28.6 MB in 0s (93.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19950 files and directories currently installed.) @@ -399,8 +431,8 @@ Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' -Local time is now: Sun Dec 1 19:02:25 UTC 2024. -Universal Time is now: Sun Dec 1 19:02:25 UTC 2024. +Local time is now: Sun Jan 4 01:26:03 UTC 2026. +Universal Time is now: Sun Jan 4 01:26:03 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... @@ -456,7 +488,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/optimir-1.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../optimir_1.2-2_source.changes +I: user script /srv/workspace/pbuilder/21747/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/21747/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/optimir-1.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../optimir_1.2-2_source.changes dpkg-buildpackage: info: source package optimir dpkg-buildpackage: info: source version 1.2-2 dpkg-buildpackage: info: source distribution unstable @@ -485,23 +521,23 @@ running build running build_py creating /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir -copying optimir/__init__.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir copying optimir/command_line.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir +copying optimir/__init__.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir creating /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs -copying optimir/libs/filter_reads.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs +copying optimir/libs/library_preparation.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs copying optimir/libs/consistency.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs copying optimir/libs/scoring.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs -copying optimir/libs/annotate.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs -copying optimir/libs/mapping.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs -copying optimir/libs/__init__.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs -copying optimir/libs/post_process.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs +copying optimir/libs/read_collapser.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs copying optimir/libs/essentials.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs +copying optimir/libs/mapping.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs copying optimir/libs/get_counts.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs +copying optimir/libs/post_process.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs copying optimir/libs/pre_process.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs -copying optimir/libs/process.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs -copying optimir/libs/library_preparation.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs copying optimir/libs/summarize.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs -copying optimir/libs/read_collapser.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs +copying optimir/libs/__init__.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs +copying optimir/libs/process.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs +copying optimir/libs/filter_reads.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs +copying optimir/libs/annotate.py -> /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs running egg_info creating OptimiR.egg-info writing OptimiR.egg-info/PKG-INFO @@ -737,58 +773,58 @@ creating /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12 creating /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages creating /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir -creating /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs -copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/filter_reads.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs -copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/consistency.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs -copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/scoring.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs -creating /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs/__pycache__ -copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs/__pycache__ -copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/annotate.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs -copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/mapping.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs -copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/__init__.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs -copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/post_process.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs -copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/essentials.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs -copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/get_counts.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs -copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/pre_process.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs -copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/process.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs -copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/library_preparation.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs -copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/summarize.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs -copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/read_collapser.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs creating /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/__pycache__ copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/__pycache__ -copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/__init__.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir creating /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/resources +creating /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/resources/coordinates +copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/coordinates/hsa_miRBase_v22.gff3 -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/resources/coordinates +copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/coordinates/hsa_miRCarta_v1.1.gff3 -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/resources/coordinates +copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/coordinates/hsa_miRgeneDB_v2.gff3 -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/resources/coordinates +copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/coordinates/hsa_miRBase_v21.gff3 -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/resources/coordinates creating /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/resources/fasta -copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/fasta/hsa_hairpins_miRBase_v22.fa -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/resources/fasta -copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/fasta/hsa_matures_miRgeneDB_v2.fa -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/resources/fasta -copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/fasta/hsa_matures_miRBase_v21.fa -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/resources/fasta -copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/fasta/hsa_hairpins_miRgeneDB_v2.fa -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/resources/fasta copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/fasta/hsa_matures_miRBase_v22.fa -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/resources/fasta +copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/fasta/hsa_hairpins_miRgeneDB_v2.fa -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/resources/fasta copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/fasta/hsa_matures_miRCarta_v1.1.fa -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/resources/fasta -copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/fasta/hsa_hairpins_miRBase_v21.fa -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/resources/fasta +copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/fasta/hsa_hairpins_miRBase_v22.fa -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/resources/fasta copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/fasta/hsa_hairpins_miRCarta_v1.1.fa -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/resources/fasta -creating /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/resources/coordinates -copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/coordinates/hsa_miRCarta_v1.1.gff3 -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/resources/coordinates -copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/coordinates/hsa_miRBase_v21.gff3 -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/resources/coordinates -copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/coordinates/hsa_miRBase_v22.gff3 -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/resources/coordinates -copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/coordinates/hsa_miRgeneDB_v2.gff3 -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/resources/coordinates +copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/fasta/hsa_hairpins_miRBase_v21.fa -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/resources/fasta +copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/fasta/hsa_matures_miRBase_v21.fa -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/resources/fasta +copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/resources/fasta/hsa_matures_miRgeneDB_v2.fa -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/resources/fasta copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/command_line.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir -byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs/filter_reads.py to filter_reads.cpython-312.pyc +copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/__init__.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir +creating /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs +copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/library_preparation.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs +copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/consistency.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs +creating /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs/__pycache__ +copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs/__pycache__ +copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/scoring.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs +copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/read_collapser.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs +copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/essentials.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs +copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/mapping.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs +copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/get_counts.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs +copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/post_process.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs +copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/pre_process.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs +copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/summarize.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs +copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/__init__.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs +copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/process.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs +copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/filter_reads.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs +copying /build/reproducible-path/optimir-1.2/.pybuild/cpython3_3.12_optimir/build/optimir/libs/annotate.py -> /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs +byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/command_line.py to command_line.cpython-312.pyc +byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs/library_preparation.py to library_preparation.cpython-312.pyc byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs/consistency.py to consistency.cpython-312.pyc byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs/scoring.py to scoring.cpython-312.pyc -byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs/annotate.py to annotate.cpython-312.pyc -byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs/mapping.py to mapping.cpython-312.pyc -byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs/post_process.py to post_process.cpython-312.pyc +byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs/read_collapser.py to read_collapser.cpython-312.pyc byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs/essentials.py to essentials.cpython-312.pyc +byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs/mapping.py to mapping.cpython-312.pyc byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs/get_counts.py to get_counts.cpython-312.pyc +byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs/post_process.py to post_process.cpython-312.pyc byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs/pre_process.py to pre_process.cpython-312.pyc -byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs/process.py to process.cpython-312.pyc -byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs/library_preparation.py to library_preparation.cpython-312.pyc byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs/summarize.py to summarize.cpython-312.pyc -byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs/read_collapser.py to read_collapser.cpython-312.pyc -byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/command_line.py to command_line.cpython-312.pyc +byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs/process.py to process.cpython-312.pyc +byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs/filter_reads.py to filter_reads.cpython-312.pyc +byte-compiling /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/optimir/libs/annotate.py to annotate.cpython-312.pyc running install_egg_info Copying OptimiR.egg-info to /build/reproducible-path/optimir-1.2/debian/optimir/usr/lib/python3.12/dist-packages/OptimiR-1.0.egg-info Skipping SOURCES.txt @@ -822,12 +858,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/21747/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/21747/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/17553 and its subdirectories -I: Current time: Sun Dec 1 07:02:41 -12 2024 -I: pbuilder-time-stamp: 1733079761 +I: removing directory /srv/workspace/pbuilder/21747 and its subdirectories +I: Current time: Sun Jan 4 15:26:21 +14 2026 +I: pbuilder-time-stamp: 1767489981