Diff of the two buildlogs: -- --- b1/build.log 2024-04-14 03:04:29.246039512 +0000 +++ b2/build.log 2024-04-14 03:56:42.588321977 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Apr 13 14:09:31 -12 2024 -I: pbuilder-time-stamp: 1713060571 +I: Current time: Sat May 17 23:27:36 +14 2025 +I: pbuilder-time-stamp: 1747474056 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -46,54 +46,86 @@ dpkg-source: info: applying tune_lmdb_defaults I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/54539/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/20265/tmp/hooks/D01_modify_environment starting +debug: Running on ionos6-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 17 09:27 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/20265/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/20265/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=21 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='fff1d40945734e70813bf5eb4262110a' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='54539' - PS1='# ' - PS2='> ' + INVOCATION_ID=5dba5473a5004455bfede9c616a96825 + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=20265 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.KoZzGMdD/pbuilderrc_AufE --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.KoZzGMdD/b1 --logfile b1/build.log ncbi-blast+_2.12.0+ds-4.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://78.137.99.97:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.KoZzGMdD/pbuilderrc_iISr --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.KoZzGMdD/b2 --logfile b2/build.log ncbi-blast+_2.12.0+ds-4.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://85.184.249.68:3128 I: uname -a - Linux ionos2-i386 6.1.0-20-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-20-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Apr 10 11:24 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/54539/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 14 17:47 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/20265/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -218,7 +250,7 @@ Get: 69 http://deb.debian.org/debian trixie/main i386 libmbedtls-dev i386 2.28.7-1 [718 kB] Get: 70 http://deb.debian.org/debian trixie/main i386 time i386 1.9-0.2 [50.9 kB] Get: 71 http://deb.debian.org/debian trixie/main i386 zlib1g-dev i386 1:1.3.dfsg-3+b1 [915 kB] -Fetched 46.2 MB in 1s (34.0 MB/s) +Fetched 46.2 MB in 1s (80.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19874 files and directories currently installed.) @@ -458,8 +490,8 @@ Setting up tzdata (2024a-1) ... Current default time zone: 'Etc/UTC' -Local time is now: Sun Apr 14 02:10:05 UTC 2024. -Universal Time is now: Sun Apr 14 02:10:05 UTC 2024. +Local time is now: Sat May 17 09:28:02 UTC 2025. +Universal Time is now: Sat May 17 09:28:02 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... @@ -525,7 +557,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ncbi-blast+_2.12.0+ds-4_source.changes +I: user script /srv/workspace/pbuilder/20265/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/20265/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../ncbi-blast+_2.12.0+ds-4_source.changes dpkg-buildpackage: info: source package ncbi-blast+ dpkg-buildpackage: info: source version 2.12.0+ds-4 dpkg-buildpackage: info: source distribution unstable @@ -557,78 +593,78 @@ done ) ; \ ) ; \ done -/bin/sh: 2: cd: can't cd to c++/src/objects/CMakeLists.txt -/bin/sh: 2: cd: can't cd to c++/src/objects/Makefile.in -/bin/sh: 2: cd: can't cd to c++/src/objects/Makefile.sources -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 2: cd: can't cd to c++/src/objects/nt_sources.cmd -/bin/sh: 2: cd: can't cd to c++/src/objects/nt_sources.sh -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found -/bin/sh: 6: ../../../BUILD/build/new_module.sh: not found +/bin/sh: line 2: cd: c++/src/objects/CMakeLists.txt: Not a directory +/bin/sh: line 2: cd: c++/src/objects/Makefile.in: Not a directory +/bin/sh: line 2: cd: c++/src/objects/Makefile.sources: Not a directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 2: cd: c++/src/objects/nt_sources.cmd: Not a directory +/bin/sh: line 2: cd: c++/src/objects/nt_sources.sh: Not a directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory +/bin/sh: line 6: ../../../BUILD/build/new_module.sh: No such file or directory make[1]: [debian/rules:146: override_dh_clean] Error 127 (ignored) rm -rf c++/compilers/dll c++/config.log c++/Makefile rm -f c++/configure.lineno c++/src/objects/blastxml/blastxml.module @@ -1185,207 +1221,207 @@ configure: ...done configure: updating cache config.cache configure: creating /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/config.status -config.status: creating /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/alnmgr/Makefile +config.status: creating /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial/grpc_integration/Makefile +config.status: creating /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial/Makefile +config.status: creating /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial/datatool/Makefile +config.status: creating /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.rules +config.status: creating /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app +config.status: creating /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl +config.status: creating /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.metal.tmpl +config.status: creating /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.top_builddir +config.status: creating /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/check.cfg +config.status: creating /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib +config.status: creating 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/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/bzip2/Makefile -config.status: creating /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/zlib/Makefile -config.status: creating /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/Makefile -config.status: creating /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/api/Makefile -config.status: creating /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/regexp/Makefile -config.status: creating /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/lmdbxx/Makefile -config.status: creating /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/bitset/Makefile -config.status: creating /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/tables/Makefile -config.status: creating /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/Makefile -config.status: creating /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/creaders/Makefile -config.status: creating /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/profile/Makefile -config.status: creating /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial/datatool/Makefile -config.status: creating /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial/grpc_integration/Makefile -config.status: creating /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial/Makefile +config.status: creating /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services/Makefile config.status: creating /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/./Makefile config.status: creating /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc/common/ncbi_build_ver.h config.status: creating /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/common/ncbi_revision.h @@ -5296,964 +5332,1027 @@ debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds' cd c++/BUILD/build && \ - make -j11 -f Makefile.flat all_projects="algo/blast/ app/ objmgr/ objtools/align_format/ objtools/blast/" + make -j21 -f Makefile.flat all_projects="algo/blast/ app/ objmgr/ objtools/align_format/ objtools/blast/" make[2]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build' -/usr/bin/make -w -j11 --jobserver-auth=3,4 -f Makefile.flat ptb_all.real MTARGET= +/usr/bin/make -w -j21 --jobserver-auth=3,4 -f Makefile.flat ptb_all.real MTARGET= make[3]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build' -make[3]: warning: -j11 forced in submake: resetting jobserver mode. -cd corelib/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -cd util/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -cd serial/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -cd serial/datatool/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -cd algo/blast/composition_adjustment/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -cd util/tables/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources +make[3]: warning: -j21 forced in submake: resetting jobserver mode. +cd corelib/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +cd util/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +cd serial/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +cd serial/datatool/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +cd algo/blast/composition_adjustment/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +cd util/tables/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -cd connect/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd connect/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd algo/blast/core/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' -cd algo/blast/core/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd util/sequtil/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial/datatool' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -cd util/sequtil/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd objtools/blast/services/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd objmgr/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/tables' -cd objtools/blast/services/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -cd objmgr/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/core' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd objtools/blast/seqdb_reader/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/sequtil' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/core' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd objtools/logging/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +cd objtools/readers/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/sequtil' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd objmgr/util/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +cd objtools/seqmasks_io/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd util/profile/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +cd algo/blast/dbindex/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/logging' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/readers' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd algo/dustmask/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +cd algo/winmask/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/util' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/seqmasks_io' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd objtools/alnmgr/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/profile' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/dustmask' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial/datatool' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/tables' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +cd algo/blast/api/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/winmask' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/alnmgr' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/api' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -cd objtools/blast/seqdb_reader/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/tables' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/sequtil' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/core' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/tables' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/seqmasks_io' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/logging' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/tables' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/sequtil' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/tables' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/sequtil' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/core' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/tables' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/sequtil' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/core' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/core' -/usr/bin/make[4] (Makefile.tables.lib): Nothing to be done for `export-headers'. -/usr/bin/make[4] (Makefile.composition_adjustment.lib): Nothing to be done for `export-headers'. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/tables' -/usr/bin/make[4] (Makefile.objmgr.lib): Nothing to be done for `export-headers'. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr' -cd objtools/logging/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' -/usr/bin/make[4] (Makefile.blast_services.lib): Nothing to be done for `export-headers'. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -cd objtools/readers/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services' -/usr/bin/make[4] (Makefile.sequtil.lib): Nothing to be done for `export-headers'. -/usr/bin/make[4] (Makefile.connssl.lib): Nothing to be done for `export-headers'. -/usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `export-headers'. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/sequtil' -cd objmgr/util/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -/usr/bin/make[4] (Makefile.serial.lib): Nothing to be done for `export-headers'. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/logging' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' -cd objtools/seqmasks_io/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/readers' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -cd util/profile/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -cd algo/blast/dbindex/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/util' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/seqmasks_io' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/profile' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.blast.lib): Nothing to be done for `export-headers'. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/core' -cd algo/dustmask/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/dustmask' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' -/usr/bin/make[4] (Makefile.seqdb.lib): Nothing to be done for `export-headers'. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/readers' -cd algo/winmask/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/util' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/logging' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/winmask' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/seqmasks_io' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/readers' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/logging' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/profile' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/util' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/seqmasks_io' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/readers' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/logging' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/profile' -/usr/bin/make[4] (Makefile.cserial.lib): Nothing to be done for `export-headers'. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/util' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/logging' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/seqmasks_io' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/seqmasks_io' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/dustmask' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/tables' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/alnmgr' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/core' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/sequtil' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/logging' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/readers' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/seqmasks_io' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/seqmasks_io' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/logging' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/profile' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/util' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/profile' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/readers' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/dustmask' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/winmask' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/sequtil' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/profile' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/alnmgr' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/profile' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/util' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/core' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/readers' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/logging' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/seqmasks_io' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/dustmask' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/alnmgr' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/sequtil' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/profile' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/util' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/winmask' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/dustmask' -/usr/bin/make[5] (Makefile.precompile): Nothing to be done for `all'. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/readers' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/api' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/alnmgr' +/usr/bin/make[4] (Makefile.composition_adjustment.lib): Nothing to be done for `export-headers'. +/usr/bin/make[4] (Makefile.serial.lib): Nothing to be done for `export-headers'. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' +/usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `export-headers'. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/winmask' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' +/usr/bin/make[4] (Makefile.tables.lib): Nothing to be done for `export-headers'. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/tables' +cd objtools/blast/gene_info_reader/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +/usr/bin/make[4] (Makefile.blast_services.lib): Nothing to be done for `export-headers'. +cd util/compress/api/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/winmask' +/usr/bin/make[4] (Makefile.objmgr.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +cd objtools/data_loaders/genbank/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr' +cd objtools/data_loaders/genbank/cache/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources /usr/bin/make[4] (Makefile.logging.lib): Nothing to be done for `export-headers'. -/usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `export-headers'. +/usr/bin/make[4] (Makefile.blast.lib): Nothing to be done for `export-headers'. +/usr/bin/make[4] (Makefile.seqdb.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/logging' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/util' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/winmask' +cd objtools/data_loaders/genbank/id1/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/core' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' +cd objtools/data_loaders/genbank/id2/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/api' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd cgi/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +/usr/bin/make[4] (Makefile.connssl.lib): Nothing to be done for `export-headers'. +/usr/bin/make[4] (Makefile.sequtil.lib): Nothing to be done for `export-headers'. +cd html/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/sequtil' /usr/bin/make[4] (Makefile.seqmasks_io.lib): Nothing to be done for `export-headers'. +cd objtools/align_format/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +/usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/seqmasks_io' -cd objtools/alnmgr/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -/usr/bin/make[4] (Makefile.xobjread.lib): Nothing to be done for `export-headers'. -/usr/bin/make[4] (Makefile.connect.lib): Nothing to be done for `export-headers'. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. /usr/bin/make[4] (Makefile.utrtprof.lib): Nothing to be done for `export-headers'. -cd algo/blast/api/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/profile' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/winmask' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/alnmgr' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -cd objtools/blast/gene_info_reader/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -cd util/compress/api/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/api' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/winmask' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/util' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. /usr/bin/make[4] (Makefile.xalgoblastdbindex.lib): Nothing to be done for `export-headers'. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.xalgodustmask.lib): Nothing to be done for `export-headers'. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/profile' +cd objtools/blast/blastdb_format/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -cd objtools/data_loaders/genbank/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/api' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/readers' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.xalgodustmask.lib): Nothing to be done for `export-headers'. +cd objtools/data_loaders/blastdb/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +/usr/bin/make[4] (Makefile.alnmgr.lib): Nothing to be done for `export-headers'. +/usr/bin/make[4] (Makefile.xobjread.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/dustmask' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/html' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd algo/blast/blastinput/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/alnmgr' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd objtools/eutils/api/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +cd algo/blast/proteinkmer/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd connect/services/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +/usr/bin/make[4] (Makefile.xalgowinmask.lib): Nothing to be done for `export-headers'. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/winmask' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd objtools/pubseq_gateway/client/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/readers' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -cd objtools/data_loaders/genbank/cache/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/readers' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/api' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' +make[6]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.xblast.lib): Nothing to be done for `export-headers'. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/api' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd util/regexp/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/readers' -/usr/bin/make[4] (Makefile.xalgowinmask.lib): Nothing to be done for `export-headers'. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/winmask' -cd objtools/data_loaders/genbank/id1/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/alnmgr' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' -/usr/bin/make[4] (Makefile.xobjreadex.lib): Nothing to be done for `export-headers'. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/alnmgr' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' -/usr/bin/make[4] (Makefile.xxconnect.lib): Nothing to be done for `export-headers'. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/api' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' +make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/alnmgr' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/regexp' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.cserial.lib): Nothing to be done for `export-headers'. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/readers' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/alnmgr' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/readers' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/html' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' -cd objtools/data_loaders/genbank/id2/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -/usr/bin/make[4] (Makefile.compress.lib): Nothing to be done for `export-headers'. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/api' -/usr/bin/make[4] (Makefile.alnmgr.lib): Nothing to be done for `export-headers'. -/usr/bin/make[4] (Makefile.corelib.lib): Nothing to be done for `export-headers'. -/usr/bin/make[4] (Makefile.gene_info.lib): Nothing to be done for `export-headers'. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/alnmgr' -cd cgi/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' -cd html/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -cd objtools/align_format/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/html' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.xblast.lib): Nothing to be done for `export-headers'. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/api' -/usr/bin/make[4] (Makefile.ncbi_xreader_cache.lib): Nothing to be done for `export-headers'. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' -cd objtools/blast/blastdb_format/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' -cd objtools/data_loaders/blastdb/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' -/usr/bin/make[4] (Makefile.ncbi_xreader.lib): Nothing to be done for `export-headers'. -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/html' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' -/usr/bin/make[4] (Makefile.ncbi_xreader_id1.lib): Nothing to be done for `export-headers'. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/api' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/html' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/html' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -/usr/bin/make[4] (Makefile.test_mt.lib): Nothing to be done for `export-headers'. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.connect.lib): Nothing to be done for `export-headers'. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format' -cd algo/blast/blastinput/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/html' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make[5] (Makefile.precompile): Nothing to be done for `all'. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' -/usr/bin/make[4] (Makefile.xconnect.lib): Nothing to be done for `export-headers'. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/html' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/api' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/regexp' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/regexp' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' +/usr/bin/make[4] (Makefile.compress.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/regexp' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/api' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' +cd util/xregexp/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +/usr/bin/make[4] (Makefile.xobjreadex.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/regexp' +/usr/bin/make[4] (Makefile.ncbi_xreader_id1.lib): Nothing to be done for `export-headers'. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/xregexp' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' +cd objtools/edit/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources /usr/bin/make[4] (Makefile.cgi.lib): Nothing to be done for `export-headers'. -/usr/bin/make[4] (Makefile.html.lib): Nothing to be done for `export-headers'. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/readers' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.ncbi_xloader_genbank.lib): Nothing to be done for `export-headers'. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/html' +/usr/bin/make[4] (Makefile.ncbi_xreader.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.ncbi_xreader_id2.lib): Nothing to be done for `export-headers'. -cd objtools/eutils/api/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources +/usr/bin/make[4] (Makefile.html.lib): Nothing to be done for `export-headers'. +/usr/bin/make[4] (Makefile.ncbi_xreader_cache.lib): Nothing to be done for `export-headers'. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' -cd algo/blast/proteinkmer/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -cd connect/services/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/api' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/html' +/usr/bin/make[4] (Makefile.gene_info.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.align_format.lib): Nothing to be done for `export-headers'. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' +cd objtools/cleanup/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' -make[5]: *** No rule to make target '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/LIBUV.enabled', needed by 'requirements'. Stop. -cd objtools/pubseq_gateway/client/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -NOTE: skipping project "xxconnect2" due to unmet requirements -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' +cd objtools/format/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources /usr/bin/make[4] (Makefile.blastdb_format.lib): Nothing to be done for `export-headers'. /usr/bin/make[4] (Makefile.ncbi_xloader_blastdb.lib): Nothing to be done for `export-headers'. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' -cd util/regexp/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.test_boost.lib): Nothing to be done for `export-headers'. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/regexp' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.fcgi.lib): Nothing to be done for `export-headers'. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/api' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/regexp' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +cd algo/blast/format/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources /usr/bin/make[4] (Makefile.blastinput.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/api' -cd util/xregexp/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/regexp' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/regexp' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/xregexp' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.ncbi_xloader_blastdb_rmt.lib): Nothing to be done for `export-headers'. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer' -make[5]: *** No rule to make target '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/LIBUV.enabled', needed by 'requirements'. Stop. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' -NOTE: skipping project "psg_client" due to unmet requirements -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/regexp' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +cd algo/blast/blastinput/unit_test/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/cleanup' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +/usr/bin/make[4] (Makefile.psg_client.lib): Nothing to be done for `export-headers'. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/edit' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. /usr/bin/make[4] (Makefile.xconnserv.lib): Nothing to be done for `export-headers'. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' /usr/bin/make[4] (Makefile.eutils.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/api' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' -cd objtools/edit/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -/usr/bin/make[4] (Makefile.xthrserv.lib): Nothing to be done for `export-headers'. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' -cd objtools/cleanup/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/edit' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.proteinkmer.lib): Nothing to be done for `export-headers'. -/usr/bin/make[4] (Makefile.regexp.lib): Nothing to be done for `export-headers'. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/cleanup' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' -cd objtools/format/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/xregexp' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/format' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/xregexp' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/xregexp' -cd algo/blast/format/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/xregexp' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/format' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/edit' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/cleanup' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/edit' -/usr/bin/make[4] (Makefile.xregexp.lib): Nothing to be done for `export-headers'. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/cleanup' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/edit' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.ncbi_xcache_netcache.lib): Nothing to be done for `export-headers'. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/format' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/cleanup' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/edit' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/xregexp' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/cleanup' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/format' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/format' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/xregexp' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/format' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/format' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/xregexp' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/format' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/format' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/xregexp' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/format' -/usr/bin/make[4] (Makefile.edit.lib): Nothing to be done for `export-headers'. -/usr/bin/make[4] (Makefile.cleanup.lib): Nothing to be done for `export-headers'. -cd algo/blast/blastinput/unit_test/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/cleanup' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/edit' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd algo/blast/dbindex/makeindex/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' +/usr/bin/make[4] (Makefile.proteinkmer.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -cd algo/blast/dbindex/makeindex/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -cd algo/blast/igblast/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.regexp.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +cd algo/blast/igblast/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +cd objtools/simple/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.ncbi_xblobstorage_netcache.lib): Nothing to be done for `export-headers'. -/usr/bin/make[4] (Makefile.xregexp_template_tester.lib): Nothing to be done for `export-headers'. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.xxconnect.lib): Nothing to be done for `export-headers'. +cd algo/blast/proteinkmer/unit_test/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/igblast' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.xformat.lib): Nothing to be done for `export-headers'. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/format' -/usr/bin/make[4] (Makefile.xblastformat.lib): Nothing to be done for `export-headers'. -cd objtools/simple/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/format' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' -cd algo/blast/proteinkmer/unit_test/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/regexp' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/xregexp' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/simple' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd algo/blast/unit_tests/blast_format/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/xregexp' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[4]: Nothing to be done for 'sources'. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' -cd algo/blast/unit_tests/blast_format/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources +cd algo/blast/unit_tests/blastdb/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/xregexp' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/edit' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/format' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/format' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[4]: Nothing to be done for 'sources'. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/cleanup' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -cd algo/blast/unit_tests/blastdb/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -cd objtools/blast/seqdb_writer/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -cd algo/blast/unit_tests/seqdb_reader/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources +cd objtools/blast/seqdb_writer/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.fcgi.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/xregexp' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/edit' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/format' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/cleanup' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/format' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/edit' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/igblast' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/format' make[4]: Nothing to be done for 'sources'. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' -cd app/blast/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/igblast' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/format' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +cd algo/blast/unit_tests/seqdb_reader/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/cleanup' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.ncbi_xloader_genbank.lib): Nothing to be done for `export-headers'. +/usr/bin/make[4] (Makefile.corelib.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/igblast' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/edit' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/simple' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.ncbi_xloader_blastdb_rmt.lib): Nothing to be done for `export-headers'. +cd app/blast/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/igblast' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/simple' -cd app/blastdb/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/format' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/format' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/cleanup' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd app/blastdb/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/igblast' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/simple' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. make[4]: Nothing to be done for 'sources'. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' +cd app/dustmasker/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/igblast' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.xregexp.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/simple' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/dustmasker' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/igblast' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd app/dustmasker/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make[4] (Makefile.xconnect.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/xregexp' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/simple' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/dustmasker' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.ncbi_xcache_netcache.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.edit.lib): Nothing to be done for `export-headers'. +/usr/bin/make[4] (Makefile.xblastformat.lib): Nothing to be done for `export-headers'. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/edit' +/usr/bin/make[4] (Makefile.xformat.lib): Nothing to be done for `export-headers'. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/format' +cd algo/segmask/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +/usr/bin/make[4] (Makefile.cleanup.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/xregexp' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/format' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/cleanup' +cd app/segmasker/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd app/winmasker/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/xregexp' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +cd objmgr/split/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/segmask' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/segmasker' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/xregexp' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. /usr/bin/make[4] (Makefile.igblast.lib): Nothing to be done for `export-headers'. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/igblast' -cd algo/segmask/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/segmask' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.xobjsimple.lib): Nothing to be done for `export-headers'. make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/dustmasker' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/simple' -cd app/segmasker/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -cd app/winmasker/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/segmasker' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.blast_unit_test_util.lib): Nothing to be done for `export-headers'. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/xregexp' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -cd objmgr/split/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -/usr/bin/make[4] (Makefile.writedb.lib): Nothing to be done for `export-headers'. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/split' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' -cd objtools/align_format/unit_test/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/readers' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' +cd objtools/align_format/unit_test/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.xobjsimple.lib): Nothing to be done for `export-headers'. +/usr/bin/make[4] (Makefile.test_mt.lib): Nothing to be done for `export-headers'. +make[5]: *** No rule to make target '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/LIBUV.enabled', needed by 'requirements'. Stop. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/simple' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' +NOTE: skipping project "xxconnect2" due to unmet requirements +cd objtools/blast/blastdb_format/unit_test/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format/unit_test' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -cd objtools/blast/blastdb_format/unit_test/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +cd objtools/blast/gene_info_reader/demo/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/segmasker' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/segmask' make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -cd objtools/blast/gene_info_reader/demo/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' +/usr/bin/make[4] (Makefile.blast_unit_test_util.lib): Nothing to be done for `export-headers'. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +cd objtools/blast/gene_info_reader/unit_test/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/segmask' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.xregexp_template_tester.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' +cd objtools/blast/seqdb_reader/demo/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/regexp' +/usr/bin/make[4] (Makefile.writedb.lib): Nothing to be done for `export-headers'. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' +cd objtools/blast/seqdb_reader/test/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/segmask' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format/unit_test' +/usr/bin/make[4] (Makefile.ncbi_xblobstorage_netcache.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/split' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd objtools/blast/seqdb_writer/unit_test/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/segmask' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -cd objtools/blast/gene_info_reader/unit_test/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -make[4]: Nothing to be done for 'sources'. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/split' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/segmask' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/split' +make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -/usr/bin/make[4] (Makefile.seqalign_util.lib): Nothing to be done for `export-headers'. -cd objtools/blast/seqdb_reader/demo/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/split' +cd objtools/blast/services/unit_test/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd algo/blast/composition_adjustment/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=composition_adjustment UNIX_PROJ="" sources= configurables=configurables.null +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/split' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' -cd objtools/blast/seqdb_reader/test/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/split' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -cd objtools/blast/seqdb_writer/unit_test/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +cd util/tables/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=tables UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/split' -/usr/bin/make[4] (Makefile.xalgosegmask.lib): Nothing to be done for `export-headers'. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/segmask' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. make[4]: Nothing to be done for 'sources'. -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -cd objtools/blast/services/unit_test/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -cd corelib/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=corelib UNIX_PROJ="" sources= configurables=configurables.null -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +cd objtools/logging/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=logging UNIX_PROJ="" sources= configurables=configurables.null +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/Makefile.legacy_blast builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast -w -j11 --jobserver-auth=9,10 all -cd algo/blast/composition_adjustment/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=composition_adjustment UNIX_PROJ="" sources= configurables=configurables.null -/usr/bin/make[4] (Makefile.id2_split.lib): Nothing to be done for `export-headers'. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/split' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -cd util/tables/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=tables UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/tables' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd util/profile/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=utrtprof UNIX_PROJ="" sources= configurables=configurables.null +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' make[4]: Nothing to be done for 'sources'. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' -cd objtools/logging/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=logging UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/tables' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.test_boost.lib): Nothing to be done for `export-headers'. +cd util/regexp/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=regexp UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/logging' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Nothing to be done for 'sources'. -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' -cd util/profile/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=utrtprof UNIX_PROJ="" sources= configurables=configurables.null -make[6]: warning: -j11 forced in submake: resetting jobserver mode. -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.xalgosegmask.lib): Nothing to be done for `export-headers'. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/profile' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/Makefile.windowmasker_2.2.22_adapter builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker -w -j11 --jobserver-auth=9,10 all -cd util/regexp/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=regexp UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/segmask' make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/regexp' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +make[4]: Nothing to be done for 'sources'. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' +/usr/bin/make[4] (Makefile.id2_split.lib): Nothing to be done for `export-headers'. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/split' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +/usr/bin/make[4] (Makefile.seqalign_util.lib): Nothing to be done for `export-headers'. +/usr/bin/make[4] (Makefile.xthrserv.lib): Nothing to be done for `export-headers'. +make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[6]: warning: -j21 forced in submake: resetting jobserver mode. +make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[6]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[6]: warning: -j11 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/tables' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/logging' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/logging' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/tables' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/Makefile.legacy_blast builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast -w -j21 --jobserver-auth=9,10 all +make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/profile' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/tables' +make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/logging' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/regexp' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/profile' +make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/tables' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/logging' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/profile' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/profile' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/regexp' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/tables' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/logging' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/profile' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -w -j11 --jobserver-auth=7,8 all make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/profile' -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/regexp' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/Makefile.windowmasker_2.2.22_adapter builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker -w -j21 --jobserver-auth=9,10 all +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' +make[6]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/regexp' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/xregexp' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/composition_adjustment TMPL=composition_adjustment -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/tables TMPL=tables -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/logging TMPL=logging -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/profile TMPL=utrtprof -w -j21 --jobserver-auth=7,8 all +make[6]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.regexp.lib): Nothing to be done for `all'. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/regexp' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/composition_adjustment/compo_heap.c -o compo_heap.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c -o compo_mode_condition.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/composition_adjustment/composition_adjustment.c -o composition_adjustment.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c -o matrix_frequency_data.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c -o nlm_linear_algebra.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/imake[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' /bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/legacy_blast.pl /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin /bin/ln -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/legacy_blast.pl /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/legacy_blast.pl make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/regexp' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.corelib.lib): Nothing to be done for `all'. -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/tables TMPL=tables -w -j11 --jobserver-auth=7,8 all -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/regexp' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/logging TMPL=logging -w -j11 --jobserver-auth=7,8 all make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/regexp' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/regexp' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/profile TMPL=utrtprof -w -j11 --jobserver-auth=7,8 all -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' -cd util/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=util UNIX_PROJ="" sources= configurables=configurables.null -cd connect/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xconnect UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/Makefile.update_blastdb builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast -w -j11 --jobserver-auth=9,10 all +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' /bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin /bin/ln -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/windowmasker_2.2.22_adapter.py /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/windowmasker_2.2.22_adapter.py make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/composition_adjustment/compo_heap.c -o compo_heap.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/composition_adjustment/compo_mode_condition.c -o compo_mode_condition.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/composition_adjustment/composition_adjustment.c -o composition_adjustment.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/composition_adjustment/matrix_frequency_data.c -o matrix_frequency_data.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/composition_adjustment/nlm_linear_algebra.c -o nlm_linear_algebra.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/i/usr/bin/make[4] (Makefile.regexp.lib): Nothing to be done for `all'. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/regexp' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -cd util/sequtil/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=sequtil UNIX_PROJ="" sources= configurables=configurables.null -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/sequtil' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' +cd corelib/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=corelib UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/Makefile.update_blastdb builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast -w -j21 --jobserver-auth=9,10 all +make[4]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' -/usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `all'. -cd objtools/blast/gene_info_reader/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=gene_info UNIX_PROJ="" sources= configurables=configurables.null -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' +make[6]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' +make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/update_blastdb.pl /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/update_blastdb.pl /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/update_blastdb.pl +make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +/usr/bin/make[4] (Makefile.corelib.lib): Nothing to be done for `all'. +make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[6]: warning: -j21 forced in submake: resetting jobserver mode. +make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[6]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' +cd util/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=util UNIX_PROJ="" sources= configurables=configurables.null +make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +cd util/sequtil/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=sequtil UNIX_PROJ="" sources= configurables=configurables.null +cd objtools/blast/gene_info_reader/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=gene_info UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd html/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=html UNIX_PROJ="" sources= configurables=configurables.null +cd corelib/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=test_boost UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/sequtil' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' -cd html/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=html UNIX_PROJ="" sources= configurables=configurables.null -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/sequtil' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/sequtil' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/Makefile.get_species_taxids builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast -w -j21 --jobserver-auth=9,10 all make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/html' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect TMPL=xconnect -w -j11 --jobserver-auth=7,8 all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/sequtil' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/sequtil' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd util/xregexp/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xregexp UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/xregexp' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/composition_adjustment/compo_heap.c:137:1: warning: 's_CompoHeapIsValid' defined but not used [-Wunused-function] 137 | s_CompoHeapIsValid(BlastCompo_HeapRecord * heapArray, int i, int n) | ^~~~~~~~~~~~~~~~~~ -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/sequtil TMPL=sequtil -w -j11 --jobserver-auth=7,8 all -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/run_with_lock: Adjusting base from make_xconnect to make__connect_common per /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/.#lock-map. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/sequtil' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' +cd connect/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xconnect UNIX_PROJ="" sources= configurables=configurables.null +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/html' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/sequtil' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/xregexp' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/html' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/sequtil' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/html' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/xregexp' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/sequtil' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/html' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/composition_adjustment/redo_alignment.c:200:1: warning: 's_DistinctAlignmentsLength' defined but not used [-Wunused-function] + 200 | s_DistinctAlignmentsLength(BlastCompo_Alignment * list) + | ^~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/composition_adjustment/redo_alignment.c:185:1: warning: 's_AlignmentsAreSorted' defined but not used [-Wunused-function] + 185 | s_AlignmentsAreSorted(BlastCompo_Alignment * alignments) + | ^~~~~~~~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/xregexp' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/xregexp' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/html' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/html' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' +/usr/bin/make[4] (Makefile.util.lib): Nothing to be done for `all'. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/sequtil TMPL=sequtil -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/html TMPL=html -w -j21 --jobserver-auth=7,8 all +/usr/bin/make[4] (Makefile.xregexp.lib): Nothing to be done for `all'. +/usr/bin/make[4] (Makefile.test_boost.lib): Nothing to be done for `all'. make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/update_blastdb.pl /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/update_blastdb.pl /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/update_blastdb.pl +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/get_species_taxids.sh /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/get_species_taxids.sh /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/get_species_taxids.sh make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/html' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/html' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/gene_info_reader TMPL=gene_info -w -j21 --jobserver-auth=7,8 all +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' +cd serial/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=serial UNIX_PROJ="" sources= configurables=configurables.null +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +cd util/compress/api/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=compress UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/xregexp' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' +cd cgi/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=cgi UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/html TMPL=html -w -j11 --jobserver-auth=7,8 all +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/api' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/Makefile.get_species_taxids builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast -w -j11 --jobserver-auth=9,10 all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbsmd_stub.c -o ncbi_lbsmd_stub.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ansi_ext.c -o ncbi_ansi_ext.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_types.c -o ncbi_types.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_core.c -o ncbi_core.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.c -o ncbi_priv.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_util.c -o ncbi_util.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/composition_adjustment/redo_alignment.c:200:1: warning: 's_DistinctAlignmentsLength' defined but not used [-Wunused-function] - 200 | s_DistinctAlignmentsLength(BlastCompo_Alignment * list) - | ^~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/composition_adjustment/redo_alignment.c:185:1: warning: 's_AlignmentsAreSorted' defined but not used [-Wunused-function] - 185 | s_AlignmentsAreSorted(BlastCompo_Alignment * alignments) - | ^~~~~~~~~~~~~~~~~~~~~ -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/html' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/html/node.cpp -o node.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/html/html.cpp -o html.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/html/htmlhelper.cpp -o htmlhelper.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/html/page.cpp -o page.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/html/pager.cpp -o pager.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/html/selection.cpp -o selection.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/Makefile.cleanup-blastdb-volumes builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast -w -j21 --jobserver-auth=9,10 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect TMPL=xconnect -w -j21 --jobserver-auth=7,8 all +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/run_with_lock: Adjusting base from make_xconnect to make__connect_common per /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/.#lock-map. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/api' +make[6]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi TMPL=cgi -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial TMPL=serial -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/compress/api TMPL=compress -w -j21 --jobserver-auth=7,8 all +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/run_with_lock: Adjusting base from make_cgi to make__cgi_common per /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/.#lock-map. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_servicep.h:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbsmd.h:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbsmd_stub.c:33: @@ -6263,7 +6362,52 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' before C2X [-Wpedantic] 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ | ^~~~~~~~~~ -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbsmd_stub.c -o ncbi_lbsmd_stub.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ansi_ext.c -o ncbi_ansi_ext.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_types.c -o ncbi_types.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_core.c -o ncbi_core.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.c -o ncbi_priv.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_util.c -o ncbi_util.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/buildmake[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_buffer.c -o ncbi_buffer.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c -o ncbi_socket.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connector.c -o ncbi_connector.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c -o ncbi_connection.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c -o ncbi_connutil.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ipv6.c -o ncbi_ipv6.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/hookdata.cpp -o hookdata.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/hookdatakey.cpp -o hookdatakey.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/typeinfo.cpp -o typeinfo.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objectinfo.cpp -o objectinfo.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objectiter.cpp -o objectiter.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objectio.cpp -o objectio.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFmake[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/cleanup-blastdb-volumes.py /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/cleanup-blastdb-volumes.py /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/cleanup-blastdb-volumes.py +make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/ncbicgi.cpp -o ncbicgi.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/cgiapp.cpp -o cgiapp.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/cgictx.cpp -o cgictx.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/ncbicgir.cpp -o ncbicgir.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/ncbires.cpp -o ncbires.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/ref_args.cpp -o ref_args.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURmake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/compress/api/compress.cpp -o compress.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/compress/api/stream.cpp -o stream.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/compress/api/streambuf.cpp -o streambuf.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/compress/api/stream_util.cpp -o stream_util.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/compress/api/bzip2.cpp -o bzip2.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/compress/api/zlib.cpp -o zlib.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-securitIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:76: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connssl.h:48:25: warning: ISO C restricts enumerator values to range of 'int' before C2X [-Wpedantic] + 48 | eNcbiCred_MbedTls = 0xC12CC114 + | ^~~~~~~~~~ +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connector.c:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connector.c: In function 'METACONN_Remove': @@ -6304,22 +6448,36 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connector.c:92:9: note: in expansion of macro 'METACONN_LOG' 92 | METACONN_LOG(33, connector->next ? eLOG_Error : eLOG_Critical, | ^~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:76: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connssl.h:48:25: warning: ISO C restricts enumerator values to range of 'int' before C2X [-Wpedantic] - 48 | eNcbiCred_MbedTls = 0xC12CC114 - | ^~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c:35: +-D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_server_info.c -o ncbi_server_info.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_host_info.c -o ncbi_host_info.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service.c -o ncbi_service.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c -o ncbi_sendmail.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_base64.c -o ncbi_base64.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c -o ncbi_heapmgr.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reprodIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connssl.h:48:25: warning: ISO C restricts enumerator values to range of 'int' before C2X [-Wpedantic] 48 | eNcbiCred_MbedTls = 0xC12CC114 | ^~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/html' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/html/node.cpp -o node.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/html/html.cpp -o html.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/html/htmlhelper.cpp -o htmlhelper.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/html/page.cpp -o page.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/html/pager.cpp -o pager.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/html/selection.cpp -o selection.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_servicep.h:38, +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_servicep.h:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbsmd.h:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_host_info.c:33: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' before C2X [-Wpedantic] + 91 | fSERV_IncludePrivate = 0x80000000, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' before C2X [-Wpedantic] + 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ + | ^~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +CE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/cgi_run.cpp -o cgi_run.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/cgi_util.cpp -o cgi_util.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/cgi_serial.cpp -o cgi_serial.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/cgi_session.cpp -o cgi_session.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/cgi_exception.cpp -o cgi_exception.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/cgiapp_cached.cpp -o cgiapp_cached.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/cgi_entry_reader.cpp -o cgi_entry_reader.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_servicep.h:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' before C2X [-Wpedantic] 91 | fSERV_IncludePrivate = 0x80000000, @@ -6327,76 +6485,17 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' before C2X [-Wpedantic] 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ | ^~~~~~~~~~ -/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_buffer.c -o ncbi_buffer.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c -o ncbi_socket.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connector.c -o ncbi_connector.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c -o ncbi_connection.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c -o ncbi_connutil.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ipv6.c -o ncbi_ipv6.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_once.h:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:77: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_DoLog': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:530:9: note: in expansion of macro 'CORE_LOGF_X' - 530 | CORE_LOGF_X(112, level, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:247:5: note: in expansion of macro 'DO_CORE_LOG_X' - 247 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, data, size) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:199:5: note: in expansion of macro 'DO_CORE_LOG_DATA' - 199 | DO_CORE_LOG_DATA(NCBI_C_ERRCODE_X, subcode, level, data, size, \ - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:569:9: note: in expansion of macro 'CORE_DATAF_X' - 569 | CORE_DATAF_X(109, level, data, size, - | ^~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:601:9: note: in expansion of macro 'CORE_LOGF_X' - 601 | CORE_LOGF_X(113, level, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:609:9: note: in expansion of macro 'CORE_LOGF_X' - 609 | CORE_LOGF_X(1, eLOG_Error, - | ^~~~~~~~~~~ +ILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/typeref.cpp -o typeref.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/typemap.cpp -o typemap.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/stdtypes.cpp -o stdtypes.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/enumerated.cpp -o enumerated.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/ptrinfo.cpp -o ptrinfo.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/autoptrinfo.cpp -o autoptrinfo.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/continfo.cpp -o continfo.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blastmake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +/usr/bin/make[4] (Makefile.blast_app_util.lib): Nothing to be done for `export-headers'. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c: In function 'x_ReInit': @@ -6421,31 +6520,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:282:13: note: in expansion of macro 'CONN_LOG' 282 | CONN_LOG(4, ReInit, eLOG_Critical, "Partial re-init not allowed"); | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_InitAPI_': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:902:32: warning: format '%p' expects argument of type 'void *', but argument 3 has type 'FSSLSetup' {aka 'const struct SOCKSSL_struct * (*)(void)'} [-Wformat=] - 902 | sprintf(buf, "%p()", s_SSLSetup); - | ~^ ~~~~~~~~~~ - | | | - | | FSSLSetup {aka const struct SOCKSSL_struct * (*)(void)} - | void * -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_util.c:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_util.c: In function 'CORE_SetLOGFILE_NAME_Ex': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_util.c:153:9: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - 153 | CORE_LOGF_ERRNO_X(1, eLOG_Error, errno, - | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -6488,37 +6562,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:315:21: note: in expansion of macro 'CONN_LOG' 315 | CONN_LOG(3, ReInit, eLOG_Error, | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' - 159 | DO_CORE_LOG(0, 0, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:906:13: note: in expansion of macro 'CORE_LOGF' - 906 | CORE_LOGF(eLOG_Critical, - | ^~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:914:13: note: in expansion of macro 'CORE_LOG' - 914 | CORE_LOG(eLOG_Critical, "Secure Socket Layer (SSL) has not" - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_gethostname': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c: In function 's_Open': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -6563,40 +6606,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:436:9: note: in expansion of macro 'CONN_LOG' 436 | CONN_LOG(2, Create, eLOG_Error, "NULL connector"); | ^~~~~~~~ -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/get_species_taxids.sh /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/get_species_taxids.sh /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/get_species_taxids.sh -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 179 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:1069:13: note: in expansion of macro 'CORE_LOG_ERRNO_EXX' - 1069 | CORE_LOG_ERRNO_EXX(103, eLOG_Error, - | ^~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:1078:13: note: in expansion of macro 'CORE_LOGF_X' - 1078 | CORE_LOGF_X(104, eLOG_Error, - | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_ReInit': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -6646,38 +6655,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:458:5: note: in expansion of macro 'CONN_NOT_NULL' 458 | CONN_NOT_NULL(1, ReInit); | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_gethostbyname_': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:1259:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 1259 | CORE_LOGF_ERRNO_EXX(106, eLOG_Warning, - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_getlocalhostaddress': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:1298:9: note: in expansion of macro 'CORE_LOGF_X' - 1298 | CORE_LOGF_X(9, reget == eDefault ? eLOG_Warning : eLOG_Error, - | ^~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_util.c:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_util.c: In function 'CORE_SetLOGFILE_NAME_Ex': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_GetType': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -6722,7 +6702,6 @@ 466 | CONN_NOT_NULL_EX(6, GetType, 0); | ^~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_Description': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_gethostbyname': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -6756,21 +6735,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:1328:9: note: in expansion of macro 'CORE_LOGF_X' - 1328 | CORE_LOGF_X(155, eLOG_Warning, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' 71 | CORE_LOGF_X(subcode, level, \ | ^~~~~~~~~~~ @@ -6780,14 +6744,16 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:475:5: note: in expansion of macro 'CONN_NOT_NULL_EX' 475 | CONN_NOT_NULL_EX(7, Description, 0); | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_gethostbyaddr_': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_GetPosition': -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c: In function 'ConnNetInfo_Log': +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_servicep.h:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_dispd.h:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service.c:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' before C2X [-Wpedantic] + 91 | fSERV_IncludePrivate = 0x80000000, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' before C2X [-Wpedantic] + 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -6815,22 +6781,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:1460:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 1460 | CORE_LOGF_ERRNO_EXX(108, eLOG_Warning, - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_gethostbyaddr': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ @@ -6852,44 +6802,15 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:1494:9: note: in expansion of macro 'CORE_LOGF_X' - 1494 | CORE_LOGF_X(10, eLOG_Warning, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:137:54: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 137 | LOG_Write(lg, code, subcode, level, THIS_MODULE, CORE_CURRENT_FUNCTION, \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c:1728:9: note: in expansion of macro 'LOG_WRITE' - 1728 | LOG_WRITE(lg, NCBI_C_ERRCODE_X, 11, - | ^~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'x_TryLowerSockFileno': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:1628:13: note: in expansion of macro 'CORE_LOGF_X' - 1628 | CORE_LOGF_X(111, eLOG_Trace, - | ^~~~~~~~~~~ -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c: In function 'URL_ConnectEx': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_util.c:153:9: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + 153 | CORE_LOGF_ERRNO_X(1, eLOG_Error, errno, + | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -6957,52 +6878,15 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:516:5: note: in expansion of macro 'CONN_NOT_NULL' 516 | CONN_NOT_NULL(8, SetTimeout); | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_Select_': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:1753:21: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - 1753 | CORE_LOGF_ERRNO_X(145, eLOG_Error, errno, - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c:1944:9: note: in expansion of macro 'CORE_LOG_X' - 1944 | CORE_LOG_X(2, eLOG_Critical, "[URL_Connect] Bad argument(s)"); - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c:1981:9: note: in expansion of macro 'CORE_LOGF_X' - 1981 | CORE_LOGF_X(3, eLOG_Warning, - | ^~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_servicep.h:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lb.h:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lb.c:32: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' before C2X [-Wpedantic] + 91 | fSERV_IncludePrivate = 0x80000000, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' before C2X [-Wpedantic] + 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7022,22 +6906,6 @@ 556 | CONN_LOG_EX(9, SetTimeout, eLOG_Error, errbuf, eIO_InvalidArg); | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_GetTimeout': -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/Makefile.cleanup-blastdb-volumes builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast -w -j11 --jobserver-auth=9,10 all -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c:2004:9: note: in expansion of macro 'CORE_LOGF_X' - 2004 | CORE_LOGF_X(4, eLOG_Error, - | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7065,21 +6933,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:1882:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 1882 | CORE_LOGF_ERRNO_EXX(5, eLOG_Warning, - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ @@ -7095,24 +6948,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:572:5: note: in expansion of macro 'CONN_NOT_NULL_EX' 572 | CONN_NOT_NULL_EX(10, GetTimeout, 0); | ^~~~~~~~~~~~~~~~ -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c:2055:9: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - 2055 | CORE_LOGF_ERRNO_X(5, eLOG_Error, x_errno, - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_Poll_': -cd corelib/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=test_boost UNIX_PROJ="" sources= configurables=configurables.null /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7150,37 +6985,13 @@ 595 | CONN_LOG_EX(12, GetTimeout, eLOG_Error, errbuf, 0); | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_Wait': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c:2072:9: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - 2072 | CORE_LOGF_ERRNO_X(6, eLOG_Error, x_errno, - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:2026:9: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - 2026 | CORE_LOGF_ERRNO_X(146, eLOG_Critical, errno, - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] ++-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/stltypes.cpp -o stltypes.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/memberid.cpp -o memberid.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/memberlist.cpp -o memberlist.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/item.cpp -o item.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/classinfob.cpp -o classinfob.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/member.cpp -o member.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' @@ -7204,6 +7015,14 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:611:5: note: in expansion of macro 'CONN_NOT_NULL' 611 | CONN_NOT_NULL(13, Wait); | ^~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_servicep.h:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' before C2X [-Wpedantic] + 91 | fSERV_IncludePrivate = 0x80000000, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' before C2X [-Wpedantic] + 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7228,69 +7047,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:611:5: note: in expansion of macro 'CONN_NOT_NULL' 611 | CONN_NOT_NULL(13, Wait); | ^~~~~~~~~~~~~ -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c:2119:9: note: in expansion of macro 'CORE_LOGF_X' - 2119 | CORE_LOGF_X(7, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c: In function 'URL_Connect': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c:2152:9: note: in expansion of macro 'CORE_LOG_X' - 2152 | CORE_LOG_X(9, eLOG_Error, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:2171:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 2171 | CORE_LOGF_ERRNO_EXX(147, ready ? eLOG_Warning : eLOG_Error, - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c:2194:17: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - 2194 | CORE_LOGF_ERRNO_X(8, eLOG_Error, errno, - | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7334,7 +7090,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:680:9: note: in expansion of macro 'CONN_LOG' 680 | CONN_LOG(16, Write, eLOG_Critical, "Cannot write data"); | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_IsConnected_': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7356,21 +7111,14 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:723:13: note: in expansion of macro 'CONN_LOG' 723 | CONN_LOG(17, Write, level, "Unable to write data"); | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' - 159 | DO_CORE_LOG(0, 0, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:2747:13: note: in expansion of macro 'CORE_LOGF' - 2747 | CORE_LOGF(eLOG_Trace, - | ^~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_servicep.h:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' before C2X [-Wpedantic] + 91 | fSERV_IncludePrivate = 0x80000000, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' before C2X [-Wpedantic] + 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_Write': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -7402,21 +7150,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:2757:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 2757 | CORE_LOGF_ERRNO_EXX(6, eLOG_Trace, - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ @@ -7436,30 +7169,6 @@ 762 | CONN_NOT_NULL(18, Write); | ^~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_Pushback': -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_servicep.h:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbsmd.h:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_host_info.c:33: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' before C2X [-Wpedantic] - 91 | fSERV_IncludePrivate = 0x80000000, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' before C2X [-Wpedantic] - 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' - 159 | DO_CORE_LOG(0, 0, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:2795:25: note: in expansion of macro 'CORE_LOGF' - 2795 | CORE_LOGF(eLOG_Trace, - | ^~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7484,6 +7193,18 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:797:5: note: in expansion of macro 'CONN_NOT_NULL' 797 | CONN_NOT_NULL(19, Pushback); | ^~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c: In function 'ConnNetInfo_Log': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:137:54: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 137 | LOG_Write(lg, code, subcode, level, THIS_MODULE, CORE_CURRENT_FUNCTION, \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c:1728:9: note: in expansion of macro 'LOG_WRITE' + 1728 | LOG_WRITE(lg, NCBI_C_ERRCODE_X, 11, + | ^~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7508,7 +7229,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:797:5: note: in expansion of macro 'CONN_NOT_NULL' 797 | CONN_NOT_NULL(19, Pushback); | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_Recv': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_Flush': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -7540,21 +7260,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:2951:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 2951 | CORE_LOGF_ERRNO_EXX(7, eLOG_Trace, - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ @@ -7573,7 +7278,22 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:817:5: note: in expansion of macro 'CONN_NOT_NULL' 817 | CONN_NOT_NULL(20, Flush); | ^~~~~~~~~~~~~ -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c: In function 'URL_ConnectEx': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c:1944:9: note: in expansion of macro 'CORE_LOG_X' + 1944 | CORE_LOG_X(2, eLOG_Critical, "[URL_Connect] Bad argument(s)"); + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7617,6 +7337,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:856:9: note: in expansion of macro 'CONN_LOG' 856 | CONN_LOG(22, Read, eLOG_Critical, "Cannot read data"); | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_once.h:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:77: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_DoLog': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7629,28 +7353,24 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' - 71 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:898:17: note: in expansion of macro 'CONN_LOG_EX' - 898 | CONN_LOG_EX(32, Read, eLOG_Critical, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_Read_': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:530:9: note: in expansion of macro 'CORE_LOGF_X' + 530 | CORE_LOGF_X(112, level, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:247:5: note: in expansion of macro 'DO_CORE_LOG_X' + 247 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, data, size) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:3136:17: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - 3136 | CORE_LOGF_ERRNO_X(8, eLOG_Error, errno, - | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:199:5: note: in expansion of macro 'DO_CORE_LOG_DATA' + 199 | DO_CORE_LOG_DATA(NCBI_C_ERRCODE_X, subcode, level, data, size, \ + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:569:9: note: in expansion of macro 'CORE_DATAF_X' + 569 | CORE_DATAF_X(109, level, data, size, + | ^~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7663,16 +7383,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' - 71 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:82:39: note: in expansion of macro 'CONN_LOG_EX' - 82 | #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:924:13: note: in expansion of macro 'CONN_LOG' - 924 | CONN_LOG(23, Read, level, "Unable to read data"); - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_Read': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:601:9: note: in expansion of macro 'CORE_LOGF_X' + 601 | CORE_LOGF_X(113, level, + | ^~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c: In function 's_Adjust': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7685,18 +7401,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' - 71 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:105:11: note: in expansion of macro 'CONN_LOG_EX' - 105 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro 'CONN_NOT_NULL_EX' - 118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:971:5: note: in expansion of macro 'CONN_NOT_NULL' - 971 | CONN_NOT_NULL(24, Read); - | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:580:17: note: in expansion of macro 'CORE_LOGF_X' + 580 | CORE_LOGF_X(2, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7709,19 +7416,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' - 71 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:112:11: note: in expansion of macro 'CONN_LOG_EX' - 112 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro 'CONN_NOT_NULL_EX' - 118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:971:5: note: in expansion of macro 'CONN_NOT_NULL' - 971 | CONN_NOT_NULL(24, Read); - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_ReadLine': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:594:17: note: in expansion of macro 'CORE_LOGF_X' + 594 | CORE_LOGF_X(17, eLOG_Trace, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7734,38 +7431,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' - 71 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:105:11: note: in expansion of macro 'CONN_LOG_EX' - 105 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro 'CONN_NOT_NULL_EX' - 118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:1020:5: note: in expansion of macro 'CONN_NOT_NULL' - 1020 | CONN_NOT_NULL(25, ReadLine); - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_Send': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:3487:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 3487 | CORE_LOGF_ERRNO_EXX(11, eLOG_Trace, - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_WriteData': -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:609:9: note: in expansion of macro 'CORE_LOGF_X' + 609 | CORE_LOGF_X(1, eLOG_Error, + | ^~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:115: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_Create': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7778,22 +7449,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' - 71 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:112:11: note: in expansion of macro 'CONN_LOG_EX' - 112 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro 'CONN_NOT_NULL_EX' - 118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:1020:5: note: in expansion of macro 'CONN_NOT_NULL' - 1020 | CONN_NOT_NULL(25, ReadLine); - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:3575:31: warning: ordered comparison of pointer with integer zero [-Wpedantic] - 3575 | n_written > 0 ? " [encrypt]" : 0); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_WritePending': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:273:9: note: in expansion of macro 'CORE_LOGF_X' + 273 | CORE_LOGF_X(1, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7806,16 +7464,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' - 71 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:1067:17: note: in expansion of macro 'CONN_LOG_EX' - 1067 | CONN_LOG_EX(35, ReadLine, eLOG_Critical, - | ^~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_Status': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:295:13: note: in expansion of macro 'CORE_LOGF_X' + 295 | CORE_LOGF_X(2, eLOG_Warning, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_AttachFast': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7828,33 +7480,31 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' - 71 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:105:11: note: in expansion of macro 'CONN_LOG_EX' - 105 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro 'CONN_NOT_NULL_EX' - 118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:1086:5: note: in expansion of macro 'CONN_NOT_NULL' - 1086 | CONN_NOT_NULL(26, Status); - | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:319:9: note: in expansion of macro 'CORE_LOGF_X' + 319 | CORE_LOGF_X(3, eLOG_Warning, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_InitAPI_': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:3639:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 3639 | CORE_LOGF_ERRNO_EXX(12, sock->log != eOff - | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:329:9: note: in expansion of macro 'CORE_LOGF_X' + 329 | CORE_LOGF_X(4, eLOG_Warning, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:902:32: warning: format '%p' expects argument of type 'void *', but argument 3 has type 'FSSLSetup' {aka 'const struct SOCKSSL_struct * (*)(void)'} [-Wformat=] + 902 | sprintf(buf, "%p()", s_SSLSetup); + | ~^ ~~~~~~~~~~ + | | | + | | FSSLSetup {aka const struct SOCKSSL_struct * (*)(void)} + | void * /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7870,16 +7520,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' 71 | CORE_LOGF_X(subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:112:11: note: in expansion of macro 'CONN_LOG_EX' - 112 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro 'CONN_NOT_NULL_EX' - 118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:1086:5: note: in expansion of macro 'CONN_NOT_NULL' - 1086 | CONN_NOT_NULL(26, Status); - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_Close': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:898:17: note: in expansion of macro 'CONN_LOG_EX' + 898 | CONN_LOG_EX(32, Read, eLOG_Critical, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7895,15 +7538,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' 71 | CORE_LOGF_X(subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:105:11: note: in expansion of macro 'CONN_LOG_EX' - 105 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro 'CONN_NOT_NULL_EX' - 118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:1132:5: note: in expansion of macro 'CONN_NOT_NULL' - 1132 | CONN_NOT_NULL(27, Close); - | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:82:39: note: in expansion of macro 'CONN_LOG_EX' + 82 | #define CONN_LOG(s_c, f_n, lvl, msg) CONN_LOG_EX(s_c, f_n, lvl, msg, status) + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:924:13: note: in expansion of macro 'CONN_LOG' + 924 | CONN_LOG(23, Read, level, "Unable to read data"); + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7916,29 +7556,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' - 71 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:112:11: note: in expansion of macro 'CONN_LOG_EX' - 112 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro 'CONN_NOT_NULL_EX' - 118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:1132:5: note: in expansion of macro 'CONN_NOT_NULL' - 1132 | CONN_NOT_NULL(27, Close); - | ^~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_servicep.h:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_dispd.h:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service.c:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' before C2X [-Wpedantic] - 91 | fSERV_IncludePrivate = 0x80000000, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' before C2X [-Wpedantic] - 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_Shutdown': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_SetCallback': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c:1981:9: note: in expansion of macro 'CORE_LOGF_X' + 1981 | CORE_LOGF_X(3, eLOG_Warning, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7951,18 +7571,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' - 71 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:105:11: note: in expansion of macro 'CONN_LOG_EX' - 105 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro 'CONN_NOT_NULL_EX' - 118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:1152:5: note: in expansion of macro 'CONN_NOT_NULL' - 1152 | CONN_NOT_NULL(28, SetCallback); - | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:652:17: note: in expansion of macro 'CORE_LOGF_X' + 652 | CORE_LOGF_X(3, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7975,18 +7586,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' - 71 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:112:11: note: in expansion of macro 'CONN_LOG_EX' - 112 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro 'CONN_NOT_NULL_EX' - 118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:1152:5: note: in expansion of macro 'CONN_NOT_NULL' - 1152 | CONN_NOT_NULL(28, SetCallback); - | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:663:17: note: in expansion of macro 'CORE_LOGF_X' + 663 | CORE_LOGF_X(18, eLOG_Trace, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -7999,9 +7601,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:3813:21: note: in expansion of macro 'CORE_LOGF_X' - 3813 | CORE_LOGF_X(13, !tv || (tv->tv_sec | tv->tv_usec) - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:673:13: note: in expansion of macro 'CORE_LOGF_X' + 673 | CORE_LOGF_X(4, eLOG_Critical, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8014,29 +7616,24 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' - 71 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:1158:9: note: in expansion of macro 'CONN_LOG_EX' - 1158 | CONN_LOG_EX(29, SetCallback, eLOG_Error, errbuf, eIO_InvalidArg); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:695:9: note: in expansion of macro 'CORE_LOGF_X' + 695 | CORE_LOGF_X(1, eLOG_Error, | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_GetSOCK': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:3849:25: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 3849 | CORE_LOGF_ERRNO_EXX(127, eLOG_Trace, - | ^~~~~~~~~~~~~~~~~~~ -/usr/bin/make[4] (Makefile.test_boost.lib): Nothing to be done for `all'. +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' + 159 | DO_CORE_LOG(0, 0, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:906:13: note: in expansion of macro 'CORE_LOGF' + 906 | CORE_LOGF(eLOG_Critical, + | ^~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8046,21 +7643,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' - 71 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:105:11: note: in expansion of macro 'CONN_LOG_EX' - 105 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro 'CONN_NOT_NULL_EX' - 118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:1180:5: note: in expansion of macro 'CONN_NOT_NULL' - 1180 | CONN_NOT_NULL(36, GetSOCK); - | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:914:13: note: in expansion of macro 'CORE_LOG' + 914 | CORE_LOG(eLOG_Critical, "Secure Socket Layer (SSL) has not" + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_gethostname': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8070,12 +7659,14 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:179:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 179 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:3900:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 3900 | CORE_LOGF_ERRNO_EXX(16, eLOG_Trace, - | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:1069:13: note: in expansion of macro 'CORE_LOG_ERRNO_EXX' + 1069 | CORE_LOG_ERRNO_EXX(103, eLOG_Error, + | ^~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_Read': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_Attach': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8088,72 +7679,41 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' - 71 | CORE_LOGF_X(subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:112:11: note: in expansion of macro 'CONN_LOG_EX' - 112 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro 'CONN_NOT_NULL_EX' - 118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:1180:5: note: in expansion of macro 'CONN_NOT_NULL' - 1180 | CONN_NOT_NULL(36, GetSOCK); - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_Close_': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:3981:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 3981 | CORE_LOGF_ERRNO_EXX(17, eLOG_Trace, - | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:1078:13: note: in expansion of macro 'CORE_LOGF_X' + 1078 | CORE_LOGF_X(104, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:3997:21: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 3997 | CORE_LOGF_ERRNO_EXX(18, eLOG_Trace, - | ^~~~~~~~~~~~~~~~~~~ -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' -cd util/xregexp/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xregexp UNIX_PROJ="" sources= configurables=configurables.null +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:360:17: note: in expansion of macro 'CORE_LOGF_X' + 360 | CORE_LOGF_X(34, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c: In function 's_HEAP_Find': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4059:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 4059 | CORE_LOGF_ERRNO_EXX(19, eLOG_Trace, - | ^~~~~~~~~~~~~~~~~~~ -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/xregexp' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/cleanup-blastdb-volumes.py /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/cleanup-blastdb-volumes.py /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/cleanup-blastdb-volumes.py -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:451:9: note: in expansion of macro 'CORE_LOGF_X' + 451 | CORE_LOGF_X(8, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_gethostbyname_': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8166,10 +7726,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4099:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 4099 | CORE_LOGF_ERRNO_EXX(21, abort == 1 ? eLOG_Warning : eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:1259:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 1259 | CORE_LOGF_ERRNO_EXX(106, eLOG_Warning, | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_Connect_': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8182,9 +7741,18 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4203:13: note: in expansion of macro 'CORE_LOGF_X' - 4203 | CORE_LOGF_X(142, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' + 71 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:105:11: note: in expansion of macro 'CONN_LOG_EX' + 105 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro 'CONN_NOT_NULL_EX' + 118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:971:5: note: in expansion of macro 'CONN_NOT_NULL' + 971 | CONN_NOT_NULL(24, Read); + | ^~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8197,9 +7765,20 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4228:13: note: in expansion of macro 'CORE_LOGF_X' - 4228 | CORE_LOGF_X(22, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' + 71 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:112:11: note: in expansion of macro 'CONN_LOG_EX' + 112 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro 'CONN_NOT_NULL_EX' + 118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:971:5: note: in expansion of macro 'CONN_NOT_NULL' + 971 | CONN_NOT_NULL(24, Read); + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_ReadLine': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c: In function 's_Connect': In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service.c:42: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service.c: In function 'x_ServiceName': @@ -8230,34 +7809,40 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:812:13: note: in expansion of macro 'CORE_LOGF_X' + 812 | CORE_LOGF_X(5, eLOG_Critical, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service.c:140:13: note: in expansion of macro 'CORE_LOGF_X' 140 | CORE_LOGF_X(8, eLOG_Error, | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_getlocalhostaddress': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4254:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 4254 | CORE_LOGF_ERRNO_EXX(23, eLOG_Error, - | ^~~~~~~~~~~~~~~~~~~ -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/tables' -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/tables/raw_scoremat.c -o raw_scoremat.o -/bin/rm -f libtables.so .libtables.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libtables.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC raw_scoremat.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtables.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libtables.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libtables.so -/bin/ln -f .tables.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.tables.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/tables' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service.c: In function 'x_Open': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:1298:9: note: in expansion of macro 'CORE_LOGF_X' + 1298 | CORE_LOGF_X(9, reget == eDefault ? eLOG_Warning : eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8270,55 +7855,74 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service.c:380:13: note: in expansion of macro 'CORE_LOGF_X' - 380 | CORE_LOGF_X(1, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c:2004:9: note: in expansion of macro 'CORE_LOGF_X' + 2004 | CORE_LOGF_X(4, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_gethostbyname': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4316:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 4316 | CORE_LOGF_ERRNO_EXX(151, eLOG_Warning, - | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:1328:9: note: in expansion of macro 'CORE_LOGF_X' + 1328 | CORE_LOGF_X(155, eLOG_Warning, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4327:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 4327 | CORE_LOGF_ERRNO_EXX(135, eLOG_Warning, - | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' + 71 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:105:11: note: in expansion of macro 'CONN_LOG_EX' + 105 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro 'CONN_NOT_NULL_EX' + 118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:1020:5: note: in expansion of macro 'CONN_NOT_NULL' + 1020 | CONN_NOT_NULL(25, ReadLine); + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_gethostbyaddr_': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' + 71 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:112:11: note: in expansion of macro 'CONN_LOG_EX' + 112 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro 'CONN_NOT_NULL_EX' + 118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:1020:5: note: in expansion of macro 'CONN_NOT_NULL' + 1020 | CONN_NOT_NULL(25, ReadLine); | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4372:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 4372 | CORE_LOGF_ERRNO_EXX(131, eLOG_Error, - | ^~~~~~~~~~~~~~~~~~~ -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/tables' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8331,10 +7935,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4420:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 4420 | CORE_LOGF_ERRNO_EXX(25, sock->log != eOff +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:1460:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 1460 | CORE_LOGF_ERRNO_EXX(108, eLOG_Warning, | ^~~~~~~~~~~~~~~~~~~ -cd serial/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=serial UNIX_PROJ="" sources= configurables=configurables.null +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_gethostbyaddr': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8344,23 +7948,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4462:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 4462 | CORE_LOGF_ERRNO_EXX(26, sock->log != eOff - | ^~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/xregexp' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/xregexp' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_Create': -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:979:21: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + 979 | CORE_LOGF_ERRNO_X(20, eLOG_Error, error, + | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8373,14 +7966,25 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4570:9: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - 4570 | CORE_LOGF_ERRNO_X(27, eLOG_Error, errno, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c:2055:9: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + 2055 | CORE_LOGF_ERRNO_X(5, eLOG_Error, x_errno, | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_CreateOnTop': -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/xregexp' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/xregexp' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_Alloc': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:649:9: note: in expansion of macro 'CORE_LOG_X' + 649 | CORE_LOG_X(6, eLOG_Warning, "Heap Alloc: NULL heap"); + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8393,18 +7997,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4632:9: note: in expansion of macro 'CORE_LOGF_X' - 4632 | CORE_LOGF_X(47, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:655:9: note: in expansion of macro 'CORE_LOGF_X' + 655 | CORE_LOGF_X(7, eLOG_Error, | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service.c: In function 'SERV_SetImplicitServerType': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service.c:1115:9: warning: pointer 'svc' may be used after 'realloc' [-Wuse-after-free] - 1115 | free(svc); - | ^~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service.c:1113:25: note: call to 'realloc' here - 1113 | if (!(buf = (char*) realloc(svc, len + sizeof(CONN_IMPLICIT_SERVER_TYPE) - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 1114 | + 2/*"=\0"*/) + strlen(typ))) { - | ~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8414,23 +8009,19 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4690:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 4690 | CORE_LOGF_ERRNO_EXX(148, eLOG_Error, - | ^~~~~~~~~~~~~~~~~~~ -/usr/bin/make[4] (Makefile.blast_app_util.lib): Nothing to be done for `export-headers'. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_servicep.h:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' before C2X [-Wpedantic] - 91 | fSERV_IncludePrivate = 0x80000000, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' before C2X [-Wpedantic] - 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ - | ^~~~~~~~~~ -/usr/bin/make[4] (Makefile.xregexp.lib): Nothing to be done for `all'. -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c:2072:9: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + 2072 | CORE_LOGF_ERRNO_X(6, eLOG_Error, x_errno, + | ^~~~~~~~~~~~~~~~~ +ucible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lb.c -o ncbi_lb.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket_connector.c -o ncbi_socket_connector.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_file_connector.c -o ncbi_file_connector.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c -o ncbi_http_connector.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_memory_connector.c -o ncbi_memory_connector.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_connector.c -o ncbi_service_connector.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' @@ -8442,40 +8033,45 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4734:17: note: in expansion of macro 'CORE_LOGF_X' - 4734 | CORE_LOGF_X(48, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:1494:9: note: in expansion of macro 'CORE_LOGF_X' + 1494 | CORE_LOGF_X(10, eLOG_Warning, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'x_TryLowerSockFileno': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4783:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 4783 | CORE_LOGF_ERRNO_EXX(50, eLOG_Error, - | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:1628:13: note: in expansion of macro 'CORE_LOGF_X' + 1628 | CORE_LOGF_X(111, eLOG_Trace, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4800:9: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - 4800 | CORE_LOGF_ERRNO_X(49, eLOG_Error, errno, - | ^~~~~~~~~~~~~~~~~ -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/xregexp' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' + 71 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:1067:17: note: in expansion of macro 'CONN_LOG_EX' + 1067 | CONN_LOG_EX(35, ReadLine, eLOG_Critical, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_Select_': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_Status': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8485,13 +8081,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4887:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 4887 | CORE_LOGF_ERRNO_EXX(132, eLOG_Error, - | ^~~~~~~~~~~~~~~~~~~ -cd util/compress/api/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=compress UNIX_PROJ="" sources= configurables=configurables.null +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:1753:21: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + 1753 | CORE_LOGF_ERRNO_X(145, eLOG_Error, errno, + | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8501,20 +8096,21 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' - 159 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4909:17: note: in expansion of macro 'CORE_LOGF' - 4909 | CORE_LOGF(eLOG_Trace, - | ^~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c: In function 's_SendRcpt': -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/api' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' + 71 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:105:11: note: in expansion of macro 'CONN_LOG_EX' + 105 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro 'CONN_NOT_NULL_EX' + 118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:1086:5: note: in expansion of macro 'CONN_NOT_NULL' + 1086 | CONN_NOT_NULL(26, Status); + | ^~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8527,12 +8123,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' - 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c:2119:9: note: in expansion of macro 'CORE_LOGF_X' + 2119 | CORE_LOGF_X(7, eLOG_Error, | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:415:13: note: in expansion of macro 'SENDMAIL_RETURN' - 415 | SENDMAIL_RETURN(3, "Recipient address is too long"); - | ^~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c: In function 's_SendRcpt': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8545,9 +8141,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:418:13: note: in expansion of macro 'CORE_LOGF_X' - 418 | CORE_LOGF_X(1, eLOG_Warning, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:702:13: note: in expansion of macro 'CORE_LOGF_X' + 702 | CORE_LOGF_X(9, eLOG_Warning, | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_Free': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8557,15 +8154,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' - 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:426:13: note: in expansion of macro 'SENDMAIL_RETURN' - 426 | SENDMAIL_RETURN(4, write_error); - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:826:9: note: in expansion of macro 'CORE_LOG_X' + 826 | CORE_LOG_X(10, eLOG_Warning, "Heap Free: NULL heap"); + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c: In function 's_ConnectAndSend': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8575,30 +8170,38 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4938:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 4938 | CORE_LOGF_ERRNO_EXX(153, eLOG_Warning, - | ^~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1203:9: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + 1203 | CORE_LOGF_ERRNO_X(6, uuu->reused ? eLOG_Trace : eLOG_Error, error, + | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4949:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 4949 | CORE_LOGF_ERRNO_EXX(138, eLOG_Warning, - | ^~~~~~~~~~~~~~~~~~~ -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' + 71 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:112:11: note: in expansion of macro 'CONN_LOG_EX' + 112 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro 'CONN_NOT_NULL_EX' + 118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:1086:5: note: in expansion of macro 'CONN_NOT_NULL' + 1086 | CONN_NOT_NULL(26, Status); + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_Close': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service.c: In function 'x_Open': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8611,13 +8214,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:364:9: note: in expansion of macro 'CORE_LOGF_X' - 364 | CORE_LOGF_X(subcode, eLOG_Error, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:430:13: note: in expansion of macro 'SENDMAIL_RETURN2' - 430 | SENDMAIL_RETURN2(5, proto_error, buf); - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c: In function 'CORE_SendMailEx': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service.c:380:13: note: in expansion of macro 'CORE_LOGF_X' + 380 | CORE_LOGF_X(1, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c: In function 'URL_Connect': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8627,15 +8227,27 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' - 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:485:9: note: in expansion of macro 'SENDMAIL_RETURN' - 485 | SENDMAIL_RETURN(6, "SSendMailInfo inited improperly: Invalid magic"); - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c:2152:9: note: in expansion of macro 'CORE_LOG_X' + 2152 | CORE_LOG_X(9, eLOG_Error, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:1882:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 1882 | CORE_LOGF_ERRNO_EXX(5, eLOG_Warning, + | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8651,9 +8263,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:490:9: note: in expansion of macro 'SENDMAIL_RETURN' - 490 | SENDMAIL_RETURN(7, "At least one message recipient must be specified"); - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:415:13: note: in expansion of macro 'SENDMAIL_RETURN' + 415 | SENDMAIL_RETURN(3, "Recipient address is too long"); + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8666,27 +8278,18 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:364:9: note: in expansion of macro 'CORE_LOGF_X' - 364 | CORE_LOGF_X(subcode, eLOG_Error, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:500:9: note: in expansion of macro 'SENDMAIL_RETURN2' - 500 | SENDMAIL_RETURN2(8, "Cannot connect to sendmail", buffer); - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' + 71 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:105:11: note: in expansion of macro 'CONN_LOG_EX' + 105 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro 'CONN_NOT_NULL_EX' + 118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:1132:5: note: in expansion of macro 'CONN_NOT_NULL' + 1132 | CONN_NOT_NULL(27, Close); | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4972:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 4972 | CORE_LOGF_ERRNO_EXX(124, eLOG_Warning, - | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8699,27 +8302,34 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:364:9: note: in expansion of macro 'CORE_LOGF_X' - 364 | CORE_LOGF_X(subcode, eLOG_Error, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:508:9: note: in expansion of macro 'SENDMAIL_RETURN2' - 508 | SENDMAIL_RETURN2(9, "Protocol error in connection init", buffer); - | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:418:13: note: in expansion of macro 'CORE_LOGF_X' + 418 | CORE_LOGF_X(1, eLOG_Warning, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4990:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 4990 | CORE_LOGF_ERRNO_EXX(43, eLOG_Warning, - | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' + 71 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:112:11: note: in expansion of macro 'CONN_LOG_EX' + 112 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro 'CONN_NOT_NULL_EX' + 118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:1132:5: note: in expansion of macro 'CONN_NOT_NULL' + 1132 | CONN_NOT_NULL(27, Close); + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c: In function 'x_ReadChunkHead': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8735,9 +8345,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:513:9: note: in expansion of macro 'SENDMAIL_RETURN' - 513 | SENDMAIL_RETURN(10, "Unable to get local host name"); - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:426:13: note: in expansion of macro 'SENDMAIL_RETURN' + 426 | SENDMAIL_RETURN(4, write_error); + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8750,14 +8360,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' - 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1332:9: note: in expansion of macro 'CORE_LOGF_X' + 1332 | CORE_LOGF_X(23, eLOG_Error, | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:518:9: note: in expansion of macro 'SENDMAIL_RETURN' - 518 | SENDMAIL_RETURN(11, "Write error in HELO command"); - | ^~~~~~~~~~~~~~~ -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial TMPL=serial -w -j11 --jobserver-auth=7,8 all -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_CreateListening': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8773,9 +8378,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:364:9: note: in expansion of macro 'CORE_LOGF_X' 364 | CORE_LOGF_X(subcode, eLOG_Error, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:521:9: note: in expansion of macro 'SENDMAIL_RETURN2' - 521 | SENDMAIL_RETURN2(12, "Protocol error in HELO command", buffer); - | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:430:13: note: in expansion of macro 'SENDMAIL_RETURN2' + 430 | SENDMAIL_RETURN2(5, proto_error, buf); + | ^~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8788,12 +8393,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' - 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:832:9: note: in expansion of macro 'CORE_LOGF_X' + 832 | CORE_LOGF_X(11, eLOG_Error, | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:526:9: note: in expansion of macro 'SENDMAIL_RETURN' - 526 | SENDMAIL_RETURN(13, "Write error in MAIL command"); - | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8806,8 +8408,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5064:13: note: in expansion of macro 'CORE_LOGF_X' - 5064 | CORE_LOGF_X(144, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:845:13: note: in expansion of macro 'CORE_LOGF_X' + 845 | CORE_LOGF_X(13, eLOG_Error, | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -8821,12 +8423,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:364:9: note: in expansion of macro 'CORE_LOGF_X' - 364 | CORE_LOGF_X(subcode, eLOG_Error, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:529:9: note: in expansion of macro 'SENDMAIL_RETURN2' - 529 | SENDMAIL_RETURN2(14, "Protocol error in MAIL command", buffer); - | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:853:17: note: in expansion of macro 'CORE_LOGF_X' + 853 | CORE_LOGF_X(12, eLOG_Warning, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8839,30 +8438,40 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' - 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:550:9: note: in expansion of macro 'SENDMAIL_RETURN' - 550 | SENDMAIL_RETURN(15, "Write error in DATA command"); - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:865:5: note: in expansion of macro 'CORE_LOGF_X' + 865 | CORE_LOGF_X(14, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:364:9: note: in expansion of macro 'CORE_LOGF_X' - 364 | CORE_LOGF_X(subcode, eLOG_Error, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:552:9: note: in expansion of macro 'SENDMAIL_RETURN2' - 552 | SENDMAIL_RETURN2(16, "Protocol error in DATA command", buffer); - | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connutil.c:2194:17: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + 2194 | CORE_LOGF_ERRNO_X(8, eLOG_Error, errno, + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_Poll_': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:2026:9: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + 2026 | CORE_LOGF_ERRNO_X(146, eLOG_Critical, errno, + | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8875,9 +8484,11 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5106:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 5106 | CORE_LOGF_ERRNO_EXX(34, eLOG_Error, - | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:2171:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 2171 | CORE_LOGF_ERRNO_EXX(147, ready ? eLOG_Warning : eLOG_Error, + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_SetCallback': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c: In function 'x_ReadChunkTail': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8890,12 +8501,18 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' - 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:583:21: note: in expansion of macro 'SENDMAIL_RETURN' - 583 | SENDMAIL_RETURN(32, "Write error in sending Date"); - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' + 71 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:105:11: note: in expansion of macro 'CONN_LOG_EX' + 105 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro 'CONN_NOT_NULL_EX' + 118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:1152:5: note: in expansion of macro 'CONN_NOT_NULL' + 1152 | CONN_NOT_NULL(28, SetCallback); + | ^~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8908,12 +8525,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' - 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1373:9: note: in expansion of macro 'CORE_LOGF_X' + 1373 | CORE_LOGF_X(25, eLOG_Error, | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:590:21: note: in expansion of macro 'SENDMAIL_RETURN' - 590 | SENDMAIL_RETURN(33, "Write error in sending From"); - | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8926,12 +8540,22 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' - 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:598:17: note: in expansion of macro 'SENDMAIL_RETURN' - 598 | SENDMAIL_RETURN(17, "Write error in sending Subject"); - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' + 71 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:112:11: note: in expansion of macro 'CONN_LOG_EX' + 112 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro 'CONN_NOT_NULL_EX' + 118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:1152:5: note: in expansion of macro 'CONN_NOT_NULL' + 1152 | CONN_NOT_NULL(28, SetCallback); + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c: In function 's_ReadData': +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket_connector.c:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket_connector.c: In function 's_VT_Open': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8944,45 +8568,40 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' - 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:605:17: note: in expansion of macro 'SENDMAIL_RETURN' - 605 | SENDMAIL_RETURN(18, "Write error in sending To"); - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket_connector.c:172:13: note: in expansion of macro 'CORE_LOGF_X' + 172 | CORE_LOGF_X(33, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_IsConnected_': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5152:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 5152 | CORE_LOGF_ERRNO_EXX(35, eLOG_Error, - | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' + 159 | DO_CORE_LOG(0, 0, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:2747:13: note: in expansion of macro 'CORE_LOGF' + 2747 | CORE_LOGF(eLOG_Trace, + | ^~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' - 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:612:17: note: in expansion of macro 'SENDMAIL_RETURN' - 612 | SENDMAIL_RETURN(19, "Write error in sending Cc"); - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1415:17: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + 1415 | CORE_LOGF_ERRNO_X(24, eLOG_Error, error, + | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -8992,12 +8611,17 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:616:9: note: in expansion of macro 'CORE_LOG_X' - 616 | CORE_LOG_X(2, eLOG_Warning, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' + 71 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:1158:9: note: in expansion of macro 'CONN_LOG_EX' + 1158 | CONN_LOG_EX(29, SetCallback, eLOG_Error, errbuf, eIO_InvalidArg); + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c: In function 'CORE_SendMailEx': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c: In function 'CONN_GetSOCK': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9013,8 +8637,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:627:9: note: in expansion of macro 'SENDMAIL_RETURN' - 627 | SENDMAIL_RETURN(20, "Write error in sending mailer information"); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:485:9: note: in expansion of macro 'SENDMAIL_RETURN' + 485 | SENDMAIL_RETURN(6, "SSendMailInfo inited improperly: Invalid magic"); | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -9028,12 +8652,18 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' - 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:655:17: note: in expansion of macro 'SENDMAIL_RETURN' - 655 | SENDMAIL_RETURN(21, "Write error while sending custom header"); - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' + 71 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:105:11: note: in expansion of macro 'CONN_LOG_EX' + 105 | CONN_LOG_EX(subcode, func_name, eLOG_Error, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro 'CONN_NOT_NULL_EX' + 118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:1180:5: note: in expansion of macro 'CONN_NOT_NULL' + 1180 | CONN_NOT_NULL(36, GetSOCK); + | ^~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9043,12 +8673,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5207:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 5207 | CORE_LOGF_ERRNO_EXX(36, error != SOCK_EADDRINUSE - | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1439:13: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + 1439 | CORE_LOGF_ERRNO_X(25, eLOG_Error, error, + | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9061,29 +8691,28 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:364:9: note: in expansion of macro 'CORE_LOGF_X' - 364 | CORE_LOGF_X(subcode, eLOG_Error, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' + 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:664:13: note: in expansion of macro 'SENDMAIL_RETURN2' - 664 | SENDMAIL_RETURN2(22, error, buffer); - | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:490:9: note: in expansion of macro 'SENDMAIL_RETURN' + 490 | SENDMAIL_RETURN(7, "At least one message recipient must be specified"); + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_FreeFast': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5228:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 5228 | CORE_LOGF_ERRNO_EXX(150, eLOG_Error, - | ^~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:877:9: note: in expansion of macro 'CORE_LOG_X' + 877 | CORE_LOG_X(15, eLOG_Warning, "Heap Free: NULL heap"); + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9096,32 +8725,24 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' - 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:883:9: note: in expansion of macro 'CORE_LOGF_X' + 883 | CORE_LOGF_X(16, eLOG_Error, | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:667:13: note: in expansion of macro 'SENDMAIL_RETURN' - 667 | SENDMAIL_RETURN(23, "Write error in finalizing custom header"); - | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' - 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:676:17: note: in expansion of macro 'SENDMAIL_RETURN' - 676 | SENDMAIL_RETURN(24, "Write error in message body delimiter"); - | ^~~~~~~~~~~~~~~ -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/api' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:2757:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 2757 | CORE_LOGF_ERRNO_EXX(6, eLOG_Trace, + | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9134,12 +8755,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' - 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:702:17: note: in expansion of macro 'SENDMAIL_RETURN' - 702 | SENDMAIL_RETURN(25, "Write error while sending message body"); - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:902:13: note: in expansion of macro 'CORE_LOGF_X' + 902 | CORE_LOGF_X(17, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9149,17 +8767,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' + 159 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:364:9: note: in expansion of macro 'CORE_LOGF_X' - 364 | CORE_LOGF_X(subcode, eLOG_Error, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:711:13: note: in expansion of macro 'SENDMAIL_RETURN2' - 711 | SENDMAIL_RETURN2(26, error, buffer); - | ^~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:2795:25: note: in expansion of macro 'CORE_LOGF' + 2795 | CORE_LOGF(eLOG_Trace, + | ^~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c: In function 's_ReadHeader': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9169,13 +8783,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5298:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 5298 | CORE_LOGF_ERRNO_EXX(37, eLOG_Error, - | ^~~~~~~~~~~~~~~~~~~ -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/api' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1516:17: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + 1516 | CORE_LOGF_ERRNO_X(7, eLOG_Error, error, + | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9188,12 +8801,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' - 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:715:13: note: in expansion of macro 'SENDMAIL_RETURN' - 715 | SENDMAIL_RETURN(27, "Write error while finalizing message body"); - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1554:13: note: in expansion of macro 'CORE_LOGF_X' + 1554 | CORE_LOGF_X(8, level, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9206,28 +8816,34 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' - 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:718:9: note: in expansion of macro 'SENDMAIL_RETURN' - 718 | SENDMAIL_RETURN(28, "Write error while finalizing message"); - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:71:7: note: in expansion of macro 'CORE_LOGF_X' + 71 | CORE_LOGF_X(subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:112:11: note: in expansion of macro 'CONN_LOG_EX' + 112 | CONN_LOG_EX(subcode, func_name, eLOG_Critical, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:118:34: note: in expansion of macro 'CONN_NOT_NULL_EX' + 118 | #define CONN_NOT_NULL(s_c, f_n) CONN_NOT_NULL_EX(s_c, f_n, eIO_InvalidArg) + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connection.c:1180:5: note: in expansion of macro 'CONN_NOT_NULL' + 1180 | CONN_NOT_NULL(36, GetSOCK); + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_Recv': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5365:9: note: in expansion of macro 'CORE_LOGF_X' - 5365 | CORE_LOGF_X(115, eLOG_Note, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_Accept': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:2951:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 2951 | CORE_LOGF_ERRNO_EXX(7, eLOG_Trace, + | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9243,8 +8859,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:364:9: note: in expansion of macro 'CORE_LOGF_X' 364 | CORE_LOGF_X(subcode, eLOG_Error, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:723:9: note: in expansion of macro 'SENDMAIL_RETURN2' - 723 | SENDMAIL_RETURN2(29, "Protocol error in sending message", buffer); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:500:9: note: in expansion of macro 'SENDMAIL_RETURN2' + 500 | SENDMAIL_RETURN2(8, "Cannot connect to sendmail", buffer); | ^~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -9258,9 +8874,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5402:9: note: in expansion of macro 'CORE_LOGF_X' - 5402 | CORE_LOGF_X(39, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:364:9: note: in expansion of macro 'CORE_LOGF_X' + 364 | CORE_LOGF_X(subcode, eLOG_Error, \ | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:508:9: note: in expansion of macro 'SENDMAIL_RETURN2' + 508 | SENDMAIL_RETURN2(9, "Protocol error in connection init", buffer); + | ^~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9276,10 +8895,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:726:9: note: in expansion of macro 'SENDMAIL_RETURN' - 726 | SENDMAIL_RETURN(30, "Write error in QUIT command"); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:513:9: note: in expansion of macro 'SENDMAIL_RETURN' + 513 | SENDMAIL_RETURN(10, "Unable to get local host name"); | ^~~~~~~~~~~~~~~ -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/compress/api TMPL=compress -w -j11 --jobserver-auth=7,8 all /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9292,30 +8910,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:364:9: note: in expansion of macro 'CORE_LOGF_X' - 364 | CORE_LOGF_X(subcode, eLOG_Error, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:728:9: note: in expansion of macro 'SENDMAIL_RETURN2' - 728 | SENDMAIL_RETURN2(31, "Protocol error in QUIT command", buffer); - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5458:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 5458 | CORE_LOGF_ERRNO_EXX(40, eLOG_Error, - | ^~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:115: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_Create': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:913:13: note: in expansion of macro 'CORE_LOGF_X' + 913 | CORE_LOGF_X(18, eLOG_Warning, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9328,9 +8925,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:273:9: note: in expansion of macro 'CORE_LOGF_X' - 273 | CORE_LOGF_X(1, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:920:13: note: in expansion of macro 'CORE_LOGF_X' + 920 | CORE_LOGF_X(19, eLOG_Warning, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_Trim': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9343,25 +8941,24 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:295:13: note: in expansion of macro 'CORE_LOGF_X' - 295 | CORE_LOGF_X(2, eLOG_Warning, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_AttachFast': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:942:9: note: in expansion of macro 'CORE_LOGF_X' + 942 | CORE_LOGF_X(30, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:247:5: note: in expansion of macro 'DO_CORE_LOG_X' + 247 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, data, size) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:319:9: note: in expansion of macro 'CORE_LOGF_X' - 319 | CORE_LOGF_X(3, eLOG_Warning, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:199:5: note: in expansion of macro 'DO_CORE_LOG_DATA' + 199 | DO_CORE_LOG_DATA(NCBI_C_ERRCODE_X, subcode, level, data, size, \ + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1623:9: note: in expansion of macro 'CORE_DATAF_X' + 1623 | CORE_DATAF_X(9, fatal ? eLOG_Error : eLOG_Note, hdr, size, + | ^~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9374,9 +8971,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:329:9: note: in expansion of macro 'CORE_LOGF_X' - 329 | CORE_LOGF_X(4, eLOG_Warning, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1640:17: note: in expansion of macro 'CORE_LOGF_X' + 1640 | CORE_LOGF_X(22, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_Read_': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9386,29 +8984,27 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5517:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 5517 | CORE_LOGF_ERRNO_EXX(41, eLOG_Error, - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_Attach': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:3136:17: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + 3136 | CORE_LOGF_ERRNO_X(8, eLOG_Error, errno, + | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:247:5: note: in expansion of macro 'DO_CORE_LOG_X' + 247 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, data, size) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:360:17: note: in expansion of macro 'CORE_LOGF_X' - 360 | CORE_LOGF_X(34, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c: In function 's_HEAP_Find': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:199:5: note: in expansion of macro 'DO_CORE_LOG_DATA' + 199 | DO_CORE_LOG_DATA(NCBI_C_ERRCODE_X, subcode, level, data, size, \ + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1659:17: note: in expansion of macro 'CORE_DATAF_X' + 1659 | CORE_DATAF_X(9, eLOG_Note, hdr, size, + | ^~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9421,25 +9017,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:451:9: note: in expansion of macro 'CORE_LOGF_X' - 451 | CORE_LOGF_X(8, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_Alloc': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:649:9: note: in expansion of macro 'CORE_LOG_X' - 649 | CORE_LOG_X(6, eLOG_Warning, "Heap Alloc: NULL heap"); - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1710:25: note: in expansion of macro 'CORE_LOGF_X' + 1710 | CORE_LOGF_X(10, eLOG_Critical, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9452,9 +9032,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:655:9: note: in expansion of macro 'CORE_LOGF_X' - 655 | CORE_LOGF_X(7, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' + 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:518:9: note: in expansion of macro 'SENDMAIL_RETURN' + 518 | SENDMAIL_RETURN(11, "Write error in HELO command"); + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9467,10 +9050,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:702:13: note: in expansion of macro 'CORE_LOGF_X' - 702 | CORE_LOGF_X(9, eLOG_Warning, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_Free': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:364:9: note: in expansion of macro 'CORE_LOGF_X' + 364 | CORE_LOGF_X(subcode, eLOG_Error, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:521:9: note: in expansion of macro 'SENDMAIL_RETURN2' + 521 | SENDMAIL_RETURN2(12, "Protocol error in HELO command", buffer); + | ^~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9480,12 +9065,15 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:826:9: note: in expansion of macro 'CORE_LOG_X' - 826 | CORE_LOG_X(10, eLOG_Warning, "Heap Free: NULL heap"); - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' + 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:526:9: note: in expansion of macro 'SENDMAIL_RETURN' + 526 | SENDMAIL_RETURN(13, "Write error in MAIL command"); + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9498,9 +9086,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:832:9: note: in expansion of macro 'CORE_LOGF_X' - 832 | CORE_LOGF_X(11, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:977:13: note: in expansion of macro 'CORE_LOGF_X' + 977 | CORE_LOGF_X(31, eLOG_Warning, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9513,17 +9101,11 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:845:13: note: in expansion of macro 'CORE_LOGF_X' - 845 | CORE_LOGF_X(13, eLOG_Error, - | ^~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/hookdata.cpp -o hookdata.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/hookdatakey.cpp -o hookdatakey.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/typeinfo.cpp -o typeinfo.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objectinfo.cpp -o objectinfo.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objectiter.cpp -o objectiter.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objectio.cpp -o objectio.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEF/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:1004:9: note: in expansion of macro 'CORE_LOGF_X' + 1004 | CORE_LOGF_X(32, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_Send': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' @@ -9535,9 +9117,22 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5574:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 5574 | CORE_LOGF_ERRNO_EXX(42, eLOG_Warning, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:3487:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 3487 | CORE_LOGF_ERRNO_EXX(11, eLOG_Trace, | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_WriteData': +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_servicep.h:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:51: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' before C2X [-Wpedantic] + 91 | fSERV_IncludePrivate = 0x80000000, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' before C2X [-Wpedantic] + 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:3575:31: warning: ordered comparison of pointer with integer zero [-Wpedantic] + 3575 | n_written > 0 ? " [encrypt]" : 0); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_WritePending': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9547,28 +9142,35 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:853:17: note: in expansion of macro 'CORE_LOGF_X' - 853 | CORE_LOGF_X(12, eLOG_Warning, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1890:21: note: in expansion of macro 'CORE_LOG' + 1890 | CORE_LOG(eLOG_Warning, + | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/tables' +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/tables/raw_scoremat.c -o raw_scoremat.o +/bin/rm -f libtables.so .libtables.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libtables.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC raw_scoremat.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtables.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libtables.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libtables.so +/bin/ln -f .tables.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.tables.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/tables' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:865:5: note: in expansion of macro 'CORE_LOGF_X' - 865 | CORE_LOGF_X(14, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_FreeFast': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:3639:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 3639 | CORE_LOGF_ERRNO_EXX(12, sock->log != eOff + | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9578,12 +9180,15 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:877:9: note: in expansion of macro 'CORE_LOG_X' - 877 | CORE_LOG_X(15, eLOG_Warning, "Heap Free: NULL heap"); - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:364:9: note: in expansion of macro 'CORE_LOGF_X' + 364 | CORE_LOGF_X(subcode, eLOG_Error, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:529:9: note: in expansion of macro 'SENDMAIL_RETURN2' + 529 | SENDMAIL_RETURN2(14, "Protocol error in MAIL command", buffer); + | ^~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9596,16 +9201,14 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:883:9: note: in expansion of macro 'CORE_LOGF_X' - 883 | CORE_LOGF_X(16, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' + 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ | ^~~~~~~~~~~ --D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_server_info.c -o ncbi_server_info.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_host_info.c -o ncbi_host_info.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service.c -o ncbi_service.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c -o ncbi_sendmail.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_base64.c -o ncbi_base64.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c -o ncbi_heapmgr.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reprod/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:550:9: note: in expansion of macro 'SENDMAIL_RETURN' + 550 | SENDMAIL_RETURN(15, "Write error in DATA command"); + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c: In function 'x_HEAP_Walk': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' @@ -9617,8 +9220,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:902:13: note: in expansion of macro 'CORE_LOGF_X' - 902 | CORE_LOGF_X(17, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:1025:13: note: in expansion of macro 'CORE_LOGF_X' + 1025 | CORE_LOGF_X(28, eLOG_Error, | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -9629,12 +9232,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5585:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 5585 | CORE_LOGF_ERRNO_EXX(152, eLOG_Warning, - | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1913:13: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + 1913 | CORE_LOGF_ERRNO_X(11, eLOG_Error, error, + | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9647,8 +9250,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:913:13: note: in expansion of macro 'CORE_LOGF_X' - 913 | CORE_LOGF_X(18, eLOG_Warning, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:1038:13: note: in expansion of macro 'CORE_LOGF_X' + 1038 | CORE_LOGF_X(26, eLOG_Error, | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -9662,25 +9265,25 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:920:13: note: in expansion of macro 'CORE_LOGF_X' - 920 | CORE_LOGF_X(19, eLOG_Warning, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:1041:13: note: in expansion of macro 'CORE_LOGF_X' + 1041 | CORE_LOGF_X(27, eLOG_Error, | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_Trim': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_Shutdown': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5596:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 5596 | CORE_LOGF_ERRNO_EXX(137, eLOG_Warning, - | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:3813:21: note: in expansion of macro 'CORE_LOGF_X' + 3813 | CORE_LOGF_X(13, !tv || (tv->tv_sec | tv->tv_usec) + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9693,9 +9296,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:942:9: note: in expansion of macro 'CORE_LOGF_X' - 942 | CORE_LOGF_X(30, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1960:13: note: in expansion of macro 'CORE_LOGF_X' + 1960 | CORE_LOGF_X(19, eLOG_Warning, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9708,8 +9311,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:977:13: note: in expansion of macro 'CORE_LOGF_X' - 977 | CORE_LOGF_X(31, eLOG_Warning, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1965:13: note: in expansion of macro 'CORE_LOGF_X' + 1965 | CORE_LOGF_X(12, err && !(uuu->flags & fHTTP_SuppressMessages) | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -9723,10 +9326,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:1004:9: note: in expansion of macro 'CORE_LOGF_X' - 1004 | CORE_LOGF_X(32, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:364:9: note: in expansion of macro 'CORE_LOGF_X' + 364 | CORE_LOGF_X(subcode, eLOG_Error, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c: In function 'x_HEAP_Walk': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:552:9: note: in expansion of macro 'SENDMAIL_RETURN2' + 552 | SENDMAIL_RETURN2(16, "Protocol error in DATA command", buffer); + | ^~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9739,9 +9344,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:1025:13: note: in expansion of macro 'CORE_LOGF_X' - 1025 | CORE_LOGF_X(28, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' + 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:583:21: note: in expansion of macro 'SENDMAIL_RETURN' + 583 | SENDMAIL_RETURN(32, "Write error in sending Date"); + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9754,9 +9362,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:1038:13: note: in expansion of macro 'CORE_LOGF_X' - 1038 | CORE_LOGF_X(26, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' + 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:590:21: note: in expansion of macro 'SENDMAIL_RETURN' + 590 | SENDMAIL_RETURN(33, "Write error in sending From"); + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9769,9 +9380,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5616:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 5616 | CORE_LOGF_ERRNO_EXX(128, eLOG_Warning, - | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:3849:25: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 3849 | CORE_LOGF_ERRNO_EXX(127, eLOG_Trace, + | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9784,9 +9395,18 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:1041:13: note: in expansion of macro 'CORE_LOGF_X' - 1041 | CORE_LOGF_X(27, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:1056:9: note: in expansion of macro 'CORE_LOGF_X' + 1056 | CORE_LOGF_X(23, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service.c: In function 'SERV_SetImplicitServerType': +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_servicep.h:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_connector.c:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' before C2X [-Wpedantic] + 91 | fSERV_IncludePrivate = 0x80000000, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' before C2X [-Wpedantic] + 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9799,10 +9419,15 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:1056:9: note: in expansion of macro 'CORE_LOGF_X' - 1056 | CORE_LOGF_X(23, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_CloseListening': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1976:17: note: in expansion of macro 'CORE_LOGF_X' + 1976 | CORE_LOGF_X(13, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service.c:1115:9: warning: pointer 'svc' may be used after 'realloc' [-Wuse-after-free] + 1115 | free(svc); + | ^~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:50: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c: In function 'x_FTPCloseData': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9815,9 +9440,14 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:1143:13: note: in expansion of macro 'CORE_LOGF_X' - 1143 | CORE_LOGF_X(21, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:148:13: note: in expansion of macro 'CORE_LOGF_X' + 148 | CORE_LOGF_X(7, eLOG_Error, | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service.c:1113:25: note: call to 'realloc' here + 1113 | if (!(buf = (char*) realloc(svc, len + sizeof(CONN_IMPLICIT_SERVER_TYPE) + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 1114 | + 2/*"=\0"*/) + strlen(typ))) { + | ~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9830,8 +9460,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:1158:17: note: in expansion of macro 'CORE_LOGF_X' - 1158 | CORE_LOGF_X(20, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:153:17: note: in expansion of macro 'CORE_LOGF_X' + 153 | CORE_LOGF_X(9, eLOG_Error, | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -9839,15 +9469,30 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:247:5: note: in expansion of macro 'DO_CORE_LOG_X' + 247 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, data, size) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:1176:13: note: in expansion of macro 'CORE_LOGF_X' - 1176 | CORE_LOGF_X(22, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:199:5: note: in expansion of macro 'DO_CORE_LOG_DATA' + 199 | DO_CORE_LOG_DATA(NCBI_C_ERRCODE_X, subcode, level, data, size, \ + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1984:17: note: in expansion of macro 'CORE_DATAF_X' + 1984 | CORE_DATAF_X(14, eLOG_Note, s, n, + | ^~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:3900:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 3900 | CORE_LOGF_ERRNO_EXX(16, eLOG_Trace, + | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9860,9 +9505,119 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5668:9: note: in expansion of macro 'CORE_LOGF_X' - 5668 | CORE_LOGF_X(44, eLOG_Note, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:1143:13: note: in expansion of macro 'CORE_LOGF_X' + 1143 | CORE_LOGF_X(21, eLOG_Error, + | ^~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/ncbicgi.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9875,10 +9630,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:1187:17: note: in expansion of macro 'CORE_LOGF_X' - 1187 | CORE_LOGF_X(24, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:167:17: note: in expansion of macro 'CORE_LOGF_X' + 167 | CORE_LOGF_X(11, eLOG_Warning, | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_Walk': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9888,13 +9642,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:1224:9: note: in expansion of macro 'CORE_LOG_X' - 1224 | CORE_LOG_X(29, eLOG_Warning, "Heap Walk: NULL heap"); - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_Next': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:171:17: note: in expansion of macro 'CORE_LOGF_X' + 171 | CORE_LOGF_X(8, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9904,13 +9657,14 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:1237:9: note: in expansion of macro 'CORE_LOG_X' - 1237 | CORE_LOG_X(34, eLOG_Warning, "Heap Next: NULL heap"); - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_Destroy': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:188:13: note: in expansion of macro 'CORE_LOGF_X' + 188 | CORE_LOGF_X(1, xxx->send ? eLOG_Error : eLOG_Warning, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_Close_': +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/tables' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9923,9 +9677,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:1325:9: note: in expansion of macro 'CORE_LOGF_X' - 1325 | CORE_LOGF_X(33, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1993:13: note: in expansion of macro 'CORE_LOGF_X' + 1993 | CORE_LOGF_X(15, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9938,11 +9692,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5694:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 5694 | CORE_LOGF_ERRNO_EXX(45, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:3981:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 3981 | CORE_LOGF_ERRNO_EXX(17, eLOG_Trace, | ^~~~~~~~~~~~~~~~~~~ -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_RecvMsg': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c: In function 's_FTPReply': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9955,8 +9708,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5780:17: note: in expansion of macro 'CORE_LOGF_X' - 5780 | CORE_LOGF_X(20, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:296:17: note: in expansion of macro 'CORE_LOGF_X' + 296 | CORE_LOGF_X(10, eLOG_Error, | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -9964,25 +9717,18 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5829:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 5829 | CORE_LOGF_ERRNO_EXX(94, eLOG_Trace, - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_SendMsg': -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_servicep.h:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lb.h:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lb.c:32: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' before C2X [-Wpedantic] - 91 | fSERV_IncludePrivate = 0x80000000, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' before C2X [-Wpedantic] - 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' + 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:598:17: note: in expansion of macro 'SENDMAIL_RETURN' + 598 | SENDMAIL_RETURN(17, "Write error in sending Subject"); + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -9992,12 +9738,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5864:13: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - 5864 | CORE_LOGF_ERRNO_X(154, eLOG_Error, errno, - | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:3997:21: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 3997 | CORE_LOGF_ERRNO_EXX(18, eLOG_Trace, + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c: In function 's_FTPCommandEx': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10010,9 +9757,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5881:9: note: in expansion of macro 'CORE_LOGF_X' - 5881 | CORE_LOGF_X(88, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' + 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:605:17: note: in expansion of macro 'SENDMAIL_RETURN' + 605 | SENDMAIL_RETURN(18, "Write error in sending To"); + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10025,17 +9775,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5890:9: note: in expansion of macro 'CORE_LOGF_X' - 5890 | CORE_LOGF_X(89, eLOG_Error, - | ^~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/compress/api/compress.cpp -o compress.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/compress/api/stream.cpp -o stream.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/compress/api/streambuf.cpp -o streambuf.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/compress/api/stream_util.cpp -o stream_util.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/compress/api/bzip2.cpp -o bzip2.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/compress/api/zlib.cpp -o zlib.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-securit/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:379:17: note: in expansion of macro 'CORE_LOGF_X' + 379 | CORE_LOGF_X(4, eLOG_Trace, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' @@ -10047,70 +9790,58 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5940:17: note: in expansion of macro 'CORE_LOGF_X' - 5940 | CORE_LOGF_X(90, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5986:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 5986 | CORE_LOGF_ERRNO_EXX(91, eLOG_Trace, - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'TRIGGER_Create': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' + 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:612:17: note: in expansion of macro 'SENDMAIL_RETURN' + 612 | SENDMAIL_RETURN(19, "Write error in sending Cc"); + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6031:13: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - 6031 | CORE_LOGF_ERRNO_X(28, eLOG_Error, errno, - | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:1158:17: note: in expansion of macro 'CORE_LOGF_X' + 1158 | CORE_LOGF_X(20, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6041:13: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - 6041 | CORE_LOGF_ERRNO_X(143, eLOG_Warning, errno, - | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:1176:13: note: in expansion of macro 'CORE_LOGF_X' + 1176 | CORE_LOGF_X(22, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c: In function 'x_FTPLogin': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6053:13: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - 6053 | CORE_LOGF_ERRNO_X(29, eLOG_Error, errno, - | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:618:9: note: in expansion of macro 'CORE_LOGF_X' + 618 | CORE_LOGF_X(3, eLOG_Trace, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10120,12 +9851,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6063:13: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - 6063 | CORE_LOGF_ERRNO_X(30, eLOG_Warning, errno, - | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4059:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 4059 | CORE_LOGF_ERRNO_EXX(19, eLOG_Trace, + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c: In function 's_Read': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10138,26 +9870,24 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6082:13: note: in expansion of macro 'CORE_LOGF_X' - 6082 | CORE_LOGF_X(116, eLOG_Note, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'TRIGGER_Close': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:2176:17: note: in expansion of macro 'CORE_LOGF_X' + 2176 | CORE_LOGF_X(16, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6136:9: note: in expansion of macro 'CORE_LOGF_X' - 6136 | CORE_LOGF_X(117, eLOG_Note, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'LSOCK_GetOSHandleEx': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4099:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 4099 | CORE_LOGF_ERRNO_EXX(21, abort == 1 ? eLOG_Warning : eLOG_Error, + | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10170,10 +9900,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6360:9: note: in expansion of macro 'CORE_LOGF_X' - 6360 | CORE_LOGF_X(46, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_Reconnect': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:2224:13: note: in expansion of macro 'CORE_LOGF_X' + 2224 | CORE_LOGF_X(21, eLOG_Warning, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_Connect_': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10183,12 +9913,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6528:9: note: in expansion of macro 'CORE_LOGF_X' - 6528 | CORE_LOGF_X(52, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:616:9: note: in expansion of macro 'CORE_LOG_X' + 616 | CORE_LOG_X(2, eLOG_Warning, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10201,9 +9931,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6538:9: note: in expansion of macro 'CORE_LOGF_X' - 6538 | CORE_LOGF_X(53, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' + 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:627:9: note: in expansion of macro 'SENDMAIL_RETURN' + 627 | SENDMAIL_RETURN(20, "Write error in sending mailer information"); + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10216,10 +9949,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6550:13: note: in expansion of macro 'CORE_LOGF_X' - 6550 | CORE_LOGF_X(51, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_Shutdown': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' + 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:655:17: note: in expansion of macro 'SENDMAIL_RETURN' + 655 | SENDMAIL_RETURN(21, "Write error while sending custom header"); + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c: In function 'x_FTPPassive': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10232,12 +9968,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6588:9: note: in expansion of macro 'CORE_LOGF_X' - 6588 | CORE_LOGF_X(54, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:976:9: note: in expansion of macro 'CORE_LOGF_X' + 976 | CORE_LOGF_X(2, eLOG_Error, | ^~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket_connector.c:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket_connector.c: In function 's_VT_Open': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10250,9 +9983,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket_connector.c:172:13: note: in expansion of macro 'CORE_LOGF_X' - 172 | CORE_LOGF_X(33, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:1187:17: note: in expansion of macro 'CORE_LOGF_X' + 1187 | CORE_LOGF_X(24, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_Walk': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10265,9 +9999,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6595:9: note: in expansion of macro 'CORE_LOGF_X' - 6595 | CORE_LOGF_X(55, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4203:13: note: in expansion of macro 'CORE_LOGF_X' + 4203 | CORE_LOGF_X(142, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10277,13 +10011,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6603:9: note: in expansion of macro 'CORE_LOGF_X' - 6603 | CORE_LOGF_X(15, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_Wait': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:1224:9: note: in expansion of macro 'CORE_LOG_X' + 1224 | CORE_LOG_X(29, eLOG_Warning, "Heap Walk: NULL heap"); + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_Next': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10293,12 +10027,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6749:9: note: in expansion of macro 'CORE_LOGF_X' - 6749 | CORE_LOGF_X(56, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:1237:9: note: in expansion of macro 'CORE_LOG_X' + 1237 | CORE_LOG_X(34, eLOG_Warning, "Heap Next: NULL heap"); + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c: In function 'x_FTPXfer': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10311,9 +10046,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6777:13: note: in expansion of macro 'CORE_LOGF_X' - 6777 | CORE_LOGF_X(57, eLOG_Warning, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:1138:21: note: in expansion of macro 'CORE_LOGF_X' + 1138 | CORE_LOGF_X(5, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c: In function 's_VT_Write': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10326,8 +10062,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6791:13: note: in expansion of macro 'CORE_LOGF_X' - 6791 | CORE_LOGF_X(58, eLOG_Warning, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4228:13: note: in expansion of macro 'CORE_LOGF_X' + 4228 | CORE_LOGF_X(22, eLOG_Error, | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -10341,39 +10077,39 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6805:17: note: in expansion of macro 'CORE_LOGF_X' - 6805 | CORE_LOGF_X(59, eLOG_Warning, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:2481:9: note: in expansion of macro 'CORE_LOGF_X' + 2481 | CORE_LOGF_X(24, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6814:17: note: in expansion of macro 'CORE_LOGF_X' - 6814 | CORE_LOGF_X(60, eLOG_Warning, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4254:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 4254 | CORE_LOGF_ERRNO_EXX(23, eLOG_Error, + | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6824:13: note: in expansion of macro 'CORE_LOGF_X' - 6824 | CORE_LOGF_X(61, eLOG_Warning, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4316:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 4316 | CORE_LOGF_ERRNO_EXX(151, eLOG_Warning, + | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10386,10 +10122,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6834:9: note: in expansion of macro 'CORE_LOGF_X' - 6834 | CORE_LOGF_X(62, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:364:9: note: in expansion of macro 'CORE_LOGF_X' + 364 | CORE_LOGF_X(subcode, eLOG_Error, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_SetTimeout': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:664:13: note: in expansion of macro 'SENDMAIL_RETURN2' + 664 | SENDMAIL_RETURN2(22, error, buffer); + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c: In function 'HEAP_Destroy': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10402,10 +10141,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6969:9: note: in expansion of macro 'CORE_LOGF_X' - 6969 | CORE_LOGF_X(63, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' + 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_GetTimeout': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:667:13: note: in expansion of macro 'SENDMAIL_RETURN' + 667 | SENDMAIL_RETURN(23, "Write error in finalizing custom header"); + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10418,41 +10159,40 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7010:9: note: in expansion of macro 'CORE_LOGF_X' - 7010 | CORE_LOGF_X(64, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_heapmgr.c:1325:9: note: in expansion of macro 'CORE_LOGF_X' + 1325 | CORE_LOGF_X(33, eLOG_Error, | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_Read': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7052:13: note: in expansion of macro 'CORE_LOGF_X' - 7052 | CORE_LOGF_X(65, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4327:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 4327 | CORE_LOGF_ERRNO_EXX(135, eLOG_Warning, + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c: In function 's_FTPPollCntl': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7062:9: note: in expansion of macro 'CORE_LOGF_X' - 7062 | CORE_LOGF_X(66, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_ReadLine': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4372:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 4372 | CORE_LOGF_ERRNO_EXX(131, eLOG_Error, + | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10465,49 +10205,161 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7096:9: note: in expansion of macro 'CORE_LOGF_X' - 7096 | CORE_LOGF_X(125, eLOG_Error, - | ^~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_servicep.h:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' before C2X [-Wpedantic] - 91 | fSERV_IncludePrivate = 0x80000000, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' before C2X [-Wpedantic] - 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_Pushback': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:1668:13: note: in expansion of macro 'CORE_LOGF_X' + 1668 | CORE_LOGF_X(12, xxx->data ? eLOG_Error : eLOG_Warning, + | ^~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/cgiapp.cpp:45: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7176:9: note: in expansion of macro 'CORE_LOGF_X' - 7176 | CORE_LOGF_X(67, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_Write': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4420:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 4420 | CORE_LOGF_ERRNO_EXX(25, sock->log != eOff + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDIN/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c: In function 's_VT_Open': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7233:17: note: in expansion of macro 'CORE_LOGF_X' - 7233 | CORE_LOGF_X(68, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4462:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 4462 | CORE_LOGF_ERRNO_EXX(26, sock->log != eOff + | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10520,12 +10372,18 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7260:13: note: in expansion of macro 'CORE_LOGF_X' - 7260 | CORE_LOGF_X(69, eLOG_Error, - | ^~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c: In function 's_Adjust': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:1939:9: note: in expansion of macro 'CORE_LOGF_X' + 1939 | CORE_LOGF_X(13, eLOG_Error, + | ^~~~~~~~~~~ +FO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10538,9 +10396,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:580:17: note: in expansion of macro 'CORE_LOGF_X' - 580 | CORE_LOGF_X(2, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' + 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:676:17: note: in expansion of macro 'SENDMAIL_RETURN' + 676 | SENDMAIL_RETURN(24, "Write error in message body delimiter"); + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10553,9 +10414,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:594:17: note: in expansion of macro 'CORE_LOGF_X' - 594 | CORE_LOGF_X(17, eLOG_Trace, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' + 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:702:17: note: in expansion of macro 'SENDMAIL_RETURN' + 702 | SENDMAIL_RETURN(25, "Write error while sending message body"); + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10568,25 +10432,29 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7270:9: note: in expansion of macro 'CORE_LOGF_X' - 7270 | CORE_LOGF_X(70, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:364:9: note: in expansion of macro 'CORE_LOGF_X' + 364 | CORE_LOGF_X(subcode, eLOG_Error, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_Abort': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:711:13: note: in expansion of macro 'SENDMAIL_RETURN2' + 711 | SENDMAIL_RETURN2(26, error, buffer); + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_Create': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c: In function 's_VT_Write': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:652:17: note: in expansion of macro 'CORE_LOGF_X' - 652 | CORE_LOGF_X(3, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4570:9: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + 4570 | CORE_LOGF_ERRNO_X(27, eLOG_Error, errno, + | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10599,9 +10467,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:663:17: note: in expansion of macro 'CORE_LOGF_X' - 663 | CORE_LOGF_X(18, eLOG_Trace, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:2014:17: note: in expansion of macro 'CORE_LOGF_X' + 2014 | CORE_LOGF_X(6, eLOG_Error, | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_CreateOnTop': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10614,24 +10483,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:673:13: note: in expansion of macro 'CORE_LOGF_X' - 673 | CORE_LOGF_X(4, eLOG_Critical, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:695:9: note: in expansion of macro 'CORE_LOGF_X' - 695 | CORE_LOGF_X(1, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4632:9: note: in expansion of macro 'CORE_LOGF_X' + 4632 | CORE_LOGF_X(47, eLOG_Error, | ^~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_connector.c:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_connector.c: In function 's_OpenDispatcher': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10644,10 +10501,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7289:9: note: in expansion of macro 'CORE_LOGF_X' - 7289 | CORE_LOGF_X(71, eLOG_Warning, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_connector.c:102:9: note: in expansion of macro 'CORE_LOGF_X' + 102 | CORE_LOGF_X(5, eLOG_Error, | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c: In function 's_Connect': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10660,24 +10516,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:812:13: note: in expansion of macro 'CORE_LOGF_X' - 812 | CORE_LOGF_X(5, eLOG_Critical, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:979:21: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - 979 | CORE_LOGF_ERRNO_X(20, eLOG_Error, error, - | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' + 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:715:13: note: in expansion of macro 'SENDMAIL_RETURN' + 715 | SENDMAIL_RETURN(27, "Write error while finalizing message body"); + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10690,10 +10534,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7296:9: note: in expansion of macro 'CORE_LOGF_X' - 7296 | CORE_LOGF_X(72, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' + 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c: In function 's_ConnectAndSend': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:718:9: note: in expansion of macro 'SENDMAIL_RETURN' + 718 | SENDMAIL_RETURN(28, "Write error while finalizing message"); + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c: In function 's_CreateConnector': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10703,13 +10550,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1203:9: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - 1203 | CORE_LOGF_ERRNO_X(6, uuu->reused ? eLOG_Trace : eLOG_Error, error, - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c: In function 'x_ReadChunkHead': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4690:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 4690 | CORE_LOGF_ERRNO_EXX(148, eLOG_Error, + | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10719,13 +10565,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1332:9: note: in expansion of macro 'CORE_LOGF_X' - 1332 | CORE_LOGF_X(23, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c: In function 'x_ReadChunkTail': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:2328:9: note: in expansion of macro 'CORE_LOG' + 2328 | CORE_LOG(eLOG_Critical, "fFTP_UseProxy not yet implemented"); + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10738,42 +10583,22 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1373:9: note: in expansion of macro 'CORE_LOGF_X' - 1373 | CORE_LOGF_X(25, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c: In function 's_ReadData': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1415:17: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - 1415 | CORE_LOGF_ERRNO_X(24, eLOG_Error, error, - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1439:13: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - 1439 | CORE_LOGF_ERRNO_X(25, eLOG_Error, error, - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_GetOSHandleEx': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c: In function 's_ReadHeader': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4734:17: note: in expansion of macro 'CORE_LOGF_X' + 4734 | CORE_LOGF_X(48, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_connector.c: In function 's_ParseHeader': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_connector.c:179:49: warning: format '%n' expects argument of type 'int *', but argument 7 has type 'unsigned int *' [-Wformat=] + 179 | if (sscanf(header, "%u.%u.%u.%u%n", &i1, &i2, &i3, &i4, &n) < 4 + | ~^ ~~ + | | | + | int * unsigned int * + | %n +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_connector.c:180:51: warning: format '%n' expects argument of type 'int *', but argument 5 has type 'unsigned int *' [-Wformat=] + 180 | || sscanf(header + n, "%hu%x%n", &uuu->port, &tkt, &m) < 2 + | ~^ ~~ + | | | + | int * unsigned int * + | %n /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10783,12 +10608,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1516:17: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - 1516 | CORE_LOGF_ERRNO_X(7, eLOG_Error, error, - | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4783:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 4783 | CORE_LOGF_ERRNO_EXX(50, eLOG_Error, + | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10801,9 +10626,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7443:9: note: in expansion of macro 'CORE_LOGF_X' - 7443 | CORE_LOGF_X(73, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:364:9: note: in expansion of macro 'CORE_LOGF_X' + 364 | CORE_LOGF_X(subcode, eLOG_Error, \ | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:723:9: note: in expansion of macro 'SENDMAIL_RETURN2' + 723 | SENDMAIL_RETURN2(29, "Protocol error in sending message", buffer); + | ^~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10816,25 +10644,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1554:13: note: in expansion of macro 'CORE_LOGF_X' - 1554 | CORE_LOGF_X(8, level, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_SetCork': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:247:5: note: in expansion of macro 'DO_CORE_LOG_X' - 247 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, data, size) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:199:5: note: in expansion of macro 'DO_CORE_LOG_DATA' - 199 | DO_CORE_LOG_DATA(NCBI_C_ERRCODE_X, subcode, level, data, size, \ - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1623:9: note: in expansion of macro 'CORE_DATAF_X' - 1623 | CORE_DATAF_X(9, fatal ? eLOG_Error : eLOG_Note, hdr, size, - | ^~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:347:9: note: in expansion of macro 'CORE_LOGF_X' + 347 | CORE_LOGF_X(subcode, eLOG_Error, ("[SendMail] %s", reason)); \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:726:9: note: in expansion of macro 'SENDMAIL_RETURN' + 726 | SENDMAIL_RETURN(30, "Write error in QUIT command"); + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10847,54 +10662,51 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1640:17: note: in expansion of macro 'CORE_LOGF_X' - 1640 | CORE_LOGF_X(22, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:247:5: note: in expansion of macro 'DO_CORE_LOG_X' - 247 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, data, size) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:199:5: note: in expansion of macro 'DO_CORE_LOG_DATA' - 199 | DO_CORE_LOG_DATA(NCBI_C_ERRCODE_X, subcode, level, data, size, \ - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1659:17: note: in expansion of macro 'CORE_DATAF_X' - 1659 | CORE_DATAF_X(9, eLOG_Note, hdr, size, - | ^~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:364:9: note: in expansion of macro 'CORE_LOGF_X' + 364 | CORE_LOGF_X(subcode, eLOG_Error, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_sendmail.c:728:9: note: in expansion of macro 'SENDMAIL_RETURN2' + 728 | SENDMAIL_RETURN2(31, "Protocol error in QUIT command", buffer); + | ^~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_servicep.h:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lb.h:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_local.c:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' before C2X [-Wpedantic] + 91 | fSERV_IncludePrivate = 0x80000000, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' before C2X [-Wpedantic] + 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7505:9: note: in expansion of macro 'CORE_LOGF_X' - 7505 | CORE_LOGF_X(158, eLOG_Warning, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4800:9: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + 4800 | CORE_LOGF_ERRNO_X(49, eLOG_Error, errno, + | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1710:25: note: in expansion of macro 'CORE_LOGF_X' - 1710 | CORE_LOGF_X(10, eLOG_Critical, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4887:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 4887 | CORE_LOGF_ERRNO_EXX(132, eLOG_Error, + | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10904,12 +10716,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' + 159 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7512:9: note: in expansion of macro 'CORE_LOGF_X' - 7512 | CORE_LOGF_X(159, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4909:17: note: in expansion of macro 'CORE_LOGF' + 4909 | CORE_LOGF(eLOG_Trace, + | ^~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10922,25 +10734,24 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7525:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 7525 | CORE_LOGF_ERRNO_EXX(160, eLOG_Warning, - | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4938:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 4938 | CORE_LOGF_ERRNO_EXX(153, eLOG_Warning, + | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1890:21: note: in expansion of macro 'CORE_LOG' - 1890 | CORE_LOG(eLOG_Warning, - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_DisableOSSendDelay': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4949:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 4949 | CORE_LOGF_ERRNO_EXX(138, eLOG_Warning, + | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10950,27 +10761,29 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1913:13: note: in expansion of macro 'CORE_LOGF_ERRNO_X' - 1913 | CORE_LOGF_ERRNO_X(11, eLOG_Error, error, - | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4972:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 4972 | CORE_LOGF_ERRNO_EXX(124, eLOG_Warning, + | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7547:9: note: in expansion of macro 'CORE_LOGF_X' - 7547 | CORE_LOGF_X(156, eLOG_Warning, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:4990:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 4990 | CORE_LOGF_ERRNO_EXX(43, eLOG_Warning, + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_CreateListening': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_connector.c: In function 's_Open': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -10983,8 +10796,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1960:13: note: in expansion of macro 'CORE_LOGF_X' - 1960 | CORE_LOGF_X(19, eLOG_Warning, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_connector.c:947:13: note: in expansion of macro 'CORE_LOGF_X' + 947 | CORE_LOGF_X(4, eLOG_Error, | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -10998,8 +10811,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1965:13: note: in expansion of macro 'CORE_LOGF_X' - 1965 | CORE_LOGF_X(12, err && !(uuu->flags & fHTTP_SuppressMessages) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_connector.c:973:13: note: in expansion of macro 'CORE_LOGF_X' + 973 | CORE_LOGF_X(9, eLOG_Warning, | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -11013,55 +10826,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1976:17: note: in expansion of macro 'CORE_LOGF_X' - 1976 | CORE_LOGF_X(13, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:247:5: note: in expansion of macro 'DO_CORE_LOG_X' - 247 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, data, size) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:199:5: note: in expansion of macro 'DO_CORE_LOG_DATA' - 199 | DO_CORE_LOG_DATA(NCBI_C_ERRCODE_X, subcode, level, data, size, \ - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1984:17: note: in expansion of macro 'CORE_DATAF_X' - 1984 | CORE_DATAF_X(14, eLOG_Note, s, n, - | ^~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7554:9: note: in expansion of macro 'CORE_LOGF_X' - 7554 | CORE_LOGF_X(157, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:1993:13: note: in expansion of macro 'CORE_LOGF_X' - 1993 | CORE_LOGF_X(15, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5064:13: note: in expansion of macro 'CORE_LOGF_X' + 5064 | CORE_LOGF_X(144, eLOG_Error, | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c: In function 's_Read': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_connector.c: In function 's_VT_Open': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -11074,8 +10842,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7567:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 7567 | CORE_LOGF_ERRNO_EXX(75, eLOG_Warning, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5106:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 5106 | CORE_LOGF_ERRNO_EXX(34, eLOG_Error, | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -11083,63 +10851,15 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:2176:17: note: in expansion of macro 'CORE_LOGF_X' - 2176 | CORE_LOGF_X(16, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'DSOCK_CreateEx': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:2224:13: note: in expansion of macro 'CORE_LOGF_X' - 2224 | CORE_LOGF_X(21, eLOG_Warning, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7618:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 7618 | CORE_LOGF_ERRNO_EXX(76, eLOG_Error, - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'DSOCK_Bind': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c: In function 's_VT_Write': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c:2481:9: note: in expansion of macro 'CORE_LOGF_X' - 2481 | CORE_LOGF_X(24, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5152:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 5152 | CORE_LOGF_ERRNO_EXX(35, eLOG_Error, + | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -11152,9 +10872,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7738:9: note: in expansion of macro 'CORE_LOGF_X' - 7738 | CORE_LOGF_X(79, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_connector.c:1166:13: note: in expansion of macro 'CORE_LOGF_X' + 1166 | CORE_LOGF_X(6, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -11167,8 +10887,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7745:9: note: in expansion of macro 'CORE_LOGF_X' - 7745 | CORE_LOGF_X(78, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_connector.c:1178:9: note: in expansion of macro 'CORE_LOGF_X' + 1178 | CORE_LOGF_X(10, eLOG_Error, | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -11182,8 +10902,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7763:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 7763 | CORE_LOGF_ERRNO_EXX(80, error != SOCK_EADDRINUSE +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5207:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 5207 | CORE_LOGF_ERRNO_EXX(36, error != SOCK_EADDRINUSE | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -11197,70 +10917,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7779:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 7779 | CORE_LOGF_ERRNO_EXX(114, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5228:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 5228 | CORE_LOGF_ERRNO_EXX(150, eLOG_Error, | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'DSOCK_Connect': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7808:9: note: in expansion of macro 'CORE_LOGF_X' - 7808 | CORE_LOGF_X(82, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7815:9: note: in expansion of macro 'CORE_LOGF_X' - 7815 | CORE_LOGF_X(81, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7834:9: note: in expansion of macro 'CORE_LOGF_X' - 7834 | CORE_LOGF_X(83, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7847:9: note: in expansion of macro 'CORE_LOGF_X' - 7847 | CORE_LOGF_X(84, eLOG_Error, - | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -11273,73 +10932,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7876:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 7876 | CORE_LOGF_ERRNO_EXX(85, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5298:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 5298 | CORE_LOGF_ERRNO_EXX(37, eLOG_Error, | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'DSOCK_WaitMsg': -ucible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lb.c -o ncbi_lb.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket_connector.c -o ncbi_socket_connector.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_file_connector.c -o ncbi_file_connector.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_connector.c -o ncbi_http_connector.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_memory_connector.c -o ncbi_memory_connector.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_connector.c -o ncbi_service_connector.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7904:9: note: in expansion of macro 'CORE_LOGF_X' - 7904 | CORE_LOGF_X(96, eLOG_Error, - | ^~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_servicep.h:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_connector.c:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' before C2X [-Wpedantic] - 91 | fSERV_IncludePrivate = 0x80000000, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' before C2X [-Wpedantic] - 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7911:9: note: in expansion of macro 'CORE_LOGF_X' - 7911 | CORE_LOGF_X(95, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'DSOCK_RecvMsg': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7964:9: note: in expansion of macro 'CORE_LOGF_X' - 7964 | CORE_LOGF_X(93, eLOG_Error, - | ^~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_connector.c:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_connector.c: In function 's_OpenDispatcher': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -11352,22 +10947,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_connector.c:102:9: note: in expansion of macro 'CORE_LOGF_X' - 102 | CORE_LOGF_X(5, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5365:9: note: in expansion of macro 'CORE_LOGF_X' + 5365 | CORE_LOGF_X(115, eLOG_Note, | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_connector.c: In function 's_ParseHeader': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_connector.c:179:49: warning: format '%n' expects argument of type 'int *', but argument 7 has type 'unsigned int *' [-Wformat=] - 179 | if (sscanf(header, "%u.%u.%u.%u%n", &i1, &i2, &i3, &i4, &n) < 4 - | ~^ ~~ - | | | - | int * unsigned int * - | %n -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_connector.c:180:51: warning: format '%n' expects argument of type 'int *', but argument 5 has type 'unsigned int *' [-Wformat=] - 180 | || sscanf(header + n, "%hu%x%n", &uuu->port, &tkt, &m) < 2 - | ~^ ~~ - | | | - | int * unsigned int * - | %n +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_Accept': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -11380,133 +10963,100 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7971:9: note: in expansion of macro 'CORE_LOGF_X' - 7971 | CORE_LOGF_X(92, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5402:9: note: in expansion of macro 'CORE_LOGF_X' + 5402 | CORE_LOGF_X(39, eLOG_Error, | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'DSOCK_SendMsg': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_connector.c: In function 's_Open': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_connector.c:947:13: note: in expansion of macro 'CORE_LOGF_X' - 947 | CORE_LOGF_X(4, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_connector.c:973:13: note: in expansion of macro 'CORE_LOGF_X' - 973 | CORE_LOGF_X(9, eLOG_Warning, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_connector.c: In function 's_VT_Open': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_connector.c:1166:13: note: in expansion of macro 'CORE_LOGF_X' - 1166 | CORE_LOGF_X(6, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5458:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 5458 | CORE_LOGF_ERRNO_EXX(40, eLOG_Error, + | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_connector.c:1178:9: note: in expansion of macro 'CORE_LOGF_X' - 1178 | CORE_LOGF_X(10, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5517:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 5517 | CORE_LOGF_ERRNO_EXX(41, eLOG_Error, + | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:8008:9: note: in expansion of macro 'CORE_LOGF_X' - 8008 | CORE_LOGF_X(87, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5574:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 5574 | CORE_LOGF_ERRNO_EXX(42, eLOG_Warning, + | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:8015:9: note: in expansion of macro 'CORE_LOGF_X' - 8015 | CORE_LOGF_X(86, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'DSOCK_WipeMsg': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5585:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 5585 | CORE_LOGF_ERRNO_EXX(152, eLOG_Warning, + | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:8047:9: note: in expansion of macro 'CORE_LOGF_X' - 8047 | CORE_LOGF_X(98, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5596:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 5596 | CORE_LOGF_ERRNO_EXX(137, eLOG_Warning, + | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:8054:9: note: in expansion of macro 'CORE_LOGF_X' - 8054 | CORE_LOGF_X(97, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5616:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 5616 | CORE_LOGF_ERRNO_EXX(128, eLOG_Warning, + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_CloseListening': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -11519,33 +11069,41 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:8074:9: note: in expansion of macro 'CORE_LOGF_X' - 8074 | CORE_LOGF_X(99, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5668:9: note: in expansion of macro 'CORE_LOGF_X' + 5668 | CORE_LOGF_X(44, eLOG_Note, | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'DSOCK_SetBroadcast': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:8092:9: note: in expansion of macro 'CORE_LOGF_X' - 8092 | CORE_LOGF_X(101, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5694:17: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 5694 | CORE_LOGF_ERRNO_EXX(45, eLOG_Error, + | ^~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_servicep.h:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:51: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_dispd.h:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_dispd.c:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' before C2X [-Wpedantic] 91 | fSERV_IncludePrivate = 0x80000000, | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' before C2X [-Wpedantic] 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ | ^~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/ncbicgir.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_RecvMsg': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -11558,9 +11116,132 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:8099:9: note: in expansion of macro 'CORE_LOGF_X' - 8099 | CORE_LOGF_X(100, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5780:17: note: in expansion of macro 'CORE_LOGF_X' + 5780 | CORE_LOGF_X(20, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -11573,88 +11254,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:8119:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 8119 | CORE_LOGF_ERRNO_EXX(102, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5829:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 5829 | CORE_LOGF_ERRNO_EXX(94, eLOG_Trace, | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_SetReuseAddress': -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:50: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c: In function 'x_FTPCloseData': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:148:13: note: in expansion of macro 'CORE_LOGF_X' - 148 | CORE_LOGF_X(7, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:153:17: note: in expansion of macro 'CORE_LOGF_X' - 153 | CORE_LOGF_X(9, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:167:17: note: in expansion of macro 'CORE_LOGF_X' - 167 | CORE_LOGF_X(11, eLOG_Warning, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:171:17: note: in expansion of macro 'CORE_LOGF_X' - 171 | CORE_LOGF_X(8, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:188:13: note: in expansion of macro 'CORE_LOGF_X' - 188 | CORE_LOGF_X(1, xxx->send ? eLOG_Error : eLOG_Warning, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 's_SendMsg': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -11664,29 +11267,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:8285:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' - 8285 | CORE_LOGF_ERRNO_EXX(74, eLOG_Warning, - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c: In function 's_FTPReply': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:296:17: note: in expansion of macro 'CORE_LOGF_X' - 296 | CORE_LOGF_X(10, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c: In function 's_FTPCommandEx': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5864:13: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + 5864 | CORE_LOGF_ERRNO_X(154, eLOG_Error, errno, + | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -11699,10 +11285,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:379:17: note: in expansion of macro 'CORE_LOGF_X' - 379 | CORE_LOGF_X(4, eLOG_Trace, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c: In function 'x_FTPLogin': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5881:9: note: in expansion of macro 'CORE_LOGF_X' + 5881 | CORE_LOGF_X(88, eLOG_Error, + | ^~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_dispd.c:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_dispd.c: In function 's_Resolve': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -11715,10 +11303,67 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:618:9: note: in expansion of macro 'CORE_LOGF_X' - 618 | CORE_LOGF_X(3, eLOG_Trace, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_dispd.c:205:9: note: in expansion of macro 'CORE_LOGF_X' + 205 | CORE_LOGF_X(5, eLOG_Error, | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c: In function 'x_FTPPassive': +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp_cached.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/cgiapp_cached.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -11731,11 +11376,71 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:976:9: note: in expansion of macro 'CORE_LOGF_X' - 976 | CORE_LOGF_X(2, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5890:9: note: in expansion of macro 'CORE_LOGF_X' + 5890 | CORE_LOGF_X(89, eLOG_Error, | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c: In function 'x_FTPXfer': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +.c -o ncbi_ftp_connector.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_version.c -o ncbi_version.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_iprange.c -o ncbi_iprange.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_local.c -o ncbi_local.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_dispd.c -o ncbi_dispd.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c -o ncbi_lbos.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c -o ncbi_linkerd.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' @@ -11747,140 +11452,103 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:1138:21: note: in expansion of macro 'CORE_LOGF_X' - 1138 | CORE_LOGF_X(5, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_SetupSSLInternal': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5940:17: note: in expansion of macro 'CORE_LOGF_X' + 5940 | CORE_LOGF_X(90, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' - 159 | DO_CORE_LOG(0, 0, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:8674:13: note: in expansion of macro 'CORE_LOGF' - 8674 | CORE_LOGF(eLOG_Critical, ("%s reset SSL while it is in use",verb)); - | ^~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c: In function 's_FTPPollCntl': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:5986:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 5986 | CORE_LOGF_ERRNO_EXX(91, eLOG_Trace, + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'TRIGGER_Create': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:1668:13: note: in expansion of macro 'CORE_LOGF_X' - 1668 | CORE_LOGF_X(12, xxx->data ? eLOG_Error : eLOG_Warning, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c: In function 's_VT_Open': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6031:13: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + 6031 | CORE_LOGF_ERRNO_X(28, eLOG_Error, errno, + | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:1939:9: note: in expansion of macro 'CORE_LOGF_X' - 1939 | CORE_LOGF_X(13, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c: In function 's_VT_Write': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6041:13: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + 6041 | CORE_LOGF_ERRNO_X(143, eLOG_Warning, errno, + | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:2014:17: note: in expansion of macro 'CORE_LOGF_X' - 2014 | CORE_LOGF_X(6, eLOG_Error, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c: In function 's_CreateConnector': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6053:13: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + 6053 | CORE_LOGF_ERRNO_X(29, eLOG_Error, errno, + | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_ftp_connector.c:2328:9: note: in expansion of macro 'CORE_LOG' - 2328 | CORE_LOG(eLOG_Critical, "fFTP_UseProxy not yet implemented"); - | ^~~~~~~~ -nclude /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c -o optimize_target_freq.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/composition_adjustment/redo_alignment.c -o redo_alignment.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/composition_adjustment/smith_waterman.c -o smith_waterman.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/composition_adjustment/unified_pvalues.c -o unified_pvalues.o -/bin/rm -f libcomposition_adjustment.so .libcomposition_adjustment.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libcomposition_adjustment.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC compo_heap.o compo_mode_condition.o composition_adjustment.o matrix_frequency_data.o nlm_linear_algebra.o optimize_target_freq.o redo_alignment.o smith_waterman.o unified_pvalues.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcomposition_adjustment.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libcomposition_adjustment.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libcomposition_adjustment.so -/bin/ln -f .composition_adjustment.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.composition_adjustment.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' -cd cgi/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=cgi UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi TMPL=cgi -w -j11 --jobserver-auth=7,8 all -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/run_with_lock: Adjusting base from make_cgi to make__cgi_common per /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/.#lock-map. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_servicep.h:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lb.h:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_local.c:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' before C2X [-Wpedantic] - 91 | fSERV_IncludePrivate = 0x80000000, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' before C2X [-Wpedantic] - 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ - | ^~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/ncbicgi.cpp -o ncbicgi.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/cgiapp.cpp -o cgiapp.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/cgictx.cpp -o cgictx.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/ncbicgir.cpp -o ncbicgir.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/ncbires.cpp -o ncbires.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/ref_args.cpp -o ref_args.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_servicep.h:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_dispd.h:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_dispd.c:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' before C2X [-Wpedantic] - 91 | fSERV_IncludePrivate = 0x80000000, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' before C2X [-Wpedantic] - 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ - | ^~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_dispd.c:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_dispd.c: In function 's_Resolve': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:167:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 167 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6063:13: note: in expansion of macro 'CORE_LOGF_ERRNO_X' + 6063 | CORE_LOGF_ERRNO_X(30, eLOG_Warning, errno, + | ^~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -11892,14 +11560,10 @@ | ^~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_dispd.c:205:9: note: in expansion of macro 'CORE_LOGF_X' - 205 | CORE_LOGF_X(5, eLOG_Error, - | ^~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + | In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/cgictx.cpp:40: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/ncbires.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -12026,6 +11690,26 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ + ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6082:13: note: in expansion of macro 'CORE_LOGF_X' + 6082 | CORE_LOGF_X(116, eLOG_Note, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'TRIGGER_Close': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6136:9: note: in expansion of macro 'CORE_LOGF_X' + 6136 | CORE_LOGF_X(117, eLOG_Note, + | ^~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_servicep.h:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbosp.h:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:37: @@ -12036,7 +11720,145 @@ 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ | ^~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/ncbicgi.cpp:39: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/cgi_run.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_servicep.h:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lb.h:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' before C2X [-Wpedantic] + 91 | fSERV_IncludePrivate = 0x80000000, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' before C2X [-Wpedantic] + 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'LSOCK_GetOSHandleEx': +ro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6360:9: note: in expansion of macro 'CORE_LOGF_X' + 6360 | CORE_LOGF_X(46, eLOG_Error, + | ^~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/cgictx.cpp:40: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -12145,9 +11967,49 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 'g_LBOS_StringConcat': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_servicep.h:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lb.h:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' before C2X [-Wpedantic] + 91 | fSERV_IncludePrivate = 0x80000000, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' before C2X [-Wpedantic] + 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_Reconnect': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6528:9: note: in expansion of macro 'CORE_LOGF_X' + 6528 | CORE_LOGF_X(52, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12157,13 +12019,49 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6538:9: note: in expansion of macro 'CORE_LOGF_X' + 6538 | CORE_LOGF_X(53, eLOG_Error, + | ^~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_once.h:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 's_CreateConnectorHttp': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDIN/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:431:9: note: in expansion of macro 'CORE_LOG_X' - 431 | CORE_LOG_X(eLBOS_MemAlloc, eLOG_Critical, + | FO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ + ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:201:9: note: in expansion of macro 'CORE_LOG_X' + 201 | CORE_LOG_X(eNSub_Logic, eLOG_Critical, | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 'g_LBOS_StringNConcat': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12176,10 +12074,25 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:456:9: note: in expansion of macro 'CORE_LOG_X' - 456 | CORE_LOG_X(eLBOS_MemAlloc, eLOG_Critical, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:206:9: note: in expansion of macro 'CORE_LOG_X' + 206 | CORE_LOG_X(eNSub_Logic, eLOG_Critical, | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 'g_LBOS_RegGet': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6550:13: note: in expansion of macro 'CORE_LOGF_X' + 6550 | CORE_LOGF_X(51, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 's_CreateConnectorMemory': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12192,9 +12105,11 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:480:9: note: in expansion of macro 'CORE_LOG_X' - 480 | CORE_LOG_X(eLBOS_MemAlloc, eLOG_Critical, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:229:9: note: in expansion of macro 'CORE_LOG_X' + 229 | CORE_LOG_X(eNSub_Logic, eLOG_Critical, | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_Shutdown': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 's_Init': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12207,10 +12122,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:494:13: note: in expansion of macro 'CORE_LOG_X' - 494 | CORE_LOG_X(eLBOS_MemAlloc, eLOG_Warning, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:273:13: note: in expansion of macro 'CORE_LOG_X' + 273 | CORE_LOG_X(eNSub_Libc, eLOG_Error, | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 'g_LBOS_GetLBOSAddressEx': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 's_CONN_Create': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12220,12 +12135,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:562:5: note: in expansion of macro 'CORE_LOG' - 562 | CORE_LOG(eLOG_Trace, "Getting LBOS addresses..."); - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:288:9: note: in expansion of macro 'CORE_LOG_X' + 288 | CORE_LOG_X(eNSub_Logic, eLOG_Critical, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12238,24 +12153,24 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:576:17: note: in expansion of macro 'CORE_LOG_X' - 576 | CORE_LOG_X(1, eLOG_Error, "Use of custom LBOS address " - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:293:9: note: in expansion of macro 'CORE_LOG_X' + 293 | CORE_LOG_X(eNSub_Logic, eLOG_Critical, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 163 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:583:17: note: in expansion of macro 'CORE_LOG_ERRNO_X' - 583 | CORE_LOG_ERRNO_X(1, eLOG_Warning, errno, - | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:298:9: note: in expansion of macro 'CORE_LOG_X' + 298 | CORE_LOG_X(eNSub_Logic, eLOG_Critical, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12265,12 +12180,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:591:17: note: in expansion of macro 'CORE_LOGF_X' - 591 | CORE_LOGF_X(1, eLOG_Warning, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:303:9: note: in expansion of macro 'CORE_LOG_X' + 303 | CORE_LOG_X(eNSub_Logic, eLOG_Critical, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12283,40 +12198,40 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:602:17: note: in expansion of macro 'CORE_LOGF_X' - 602 | CORE_LOGF_X(1, eLOG_Note, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_ReadLbosresolver': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:312:13: note: in expansion of macro 'CORE_LOGF_X' + 312 | CORE_LOGF_X(eNSub_Connect, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:175:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 175 | DO_CORE_LOG_ERRNO(0, 0, level, error, 0, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:721:9: note: in expansion of macro 'CORE_LOGF_ERRNO' - 721 | CORE_LOGF_ERRNO(eLOG_Warning, errno, - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:321:9: note: in expansion of macro 'CORE_LOG_X' + 321 | CORE_LOG_X(eNSub_Connect, eLOG_Error, "Unable to create connector."); + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 's_CONN_Destroy': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' 224 | _mess.func = CORE_CURRENT_FUNCTION; \ | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' - 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:175:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' - 175 | DO_CORE_LOG_ERRNO(0, 0, level, error, 0, \ - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:730:9: note: in expansion of macro 'CORE_LOGF_ERRNO' - 730 | CORE_LOGF_ERRNO(eLOG_Warning, errno, - | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:332:9: note: in expansion of macro 'CORE_LOG_X' + 332 | CORE_LOG_X(eNSub_Logic, eLOG_Critical, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12326,13 +12241,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' - 159 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:739:9: note: in expansion of macro 'CORE_LOGF' - 739 | CORE_LOGF(eLOG_Warning, - | ^~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_ConnectURL': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:338:9: note: in expansion of macro 'CORE_LOG_X' + 338 | CORE_LOG_X(eNSub_Logic, eLOG_Critical, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 's_UpdateDtab': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12342,12 +12257,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' - 159 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:823:5: note: in expansion of macro 'CORE_LOGF' - 823 | CORE_LOGF(eLOG_Trace, ("Parsing URL \"%s\"", url)); - | ^~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:399:9: note: in expansion of macro 'CORE_LOG_X' + 399 | CORE_LOG_X(eNSub_Alloc, eLOG_Critical, "Couldn't alloc for dtab."); + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 's_GetReqMethod': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12357,12 +12273,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:825:9: note: in expansion of macro 'CORE_LOG' - 825 | CORE_LOG(eLOG_Warning, "Cannot parse URL"); - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:419:9: note: in expansion of macro 'CORE_LOG_X' + 419 | CORE_LOG_X(eNSub_Alloc, eLOG_Critical, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 's_GetScheme': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12372,12 +12289,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' - 159 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:828:5: note: in expansion of macro 'CORE_LOGF' - 828 | CORE_LOGF(eLOG_Trace, ("Creating HTTP%s connector", - | ^~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:441:9: note: in expansion of macro 'CORE_LOG_X' + 441 | CORE_LOG_X(eNSub_Alloc, eLOG_Critical, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 's_GetHttpProxy': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12387,12 +12305,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:835:9: note: in expansion of macro 'CORE_LOG' - 835 | CORE_LOG(eLOG_Warning, "Cannot create HTTP connector"); - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:462:13: note: in expansion of macro 'CORE_LOG_X' + 462 | CORE_LOG_X(eNSub_BadData, eLOG_Critical, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12402,12 +12320,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:838:5: note: in expansion of macro 'CORE_LOG' - 838 | CORE_LOG(eLOG_Trace, "Creating connection"); - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:473:9: note: in expansion of macro 'CORE_LOG_X' + 473 | CORE_LOG_X(eNSub_Alloc, eLOG_Critical, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12417,53 +12335,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:840:9: note: in expansion of macro 'CORE_LOG' - 840 | CORE_LOG(eLOG_Warning, "Cannot create connection"); - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/ncbicgir.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_UrlReadAll': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:484:9: note: in expansion of macro 'CORE_LOG_X' + 484 | CORE_LOG_X(eNSub_Alloc, eLOG_Critical, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12473,12 +12350,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:899:9: note: in expansion of macro 'CORE_LOG' - 899 | CORE_LOG(eLOG_Critical, "s_LBOS_UrlReadAll: No RAM. " - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6588:9: note: in expansion of macro 'CORE_LOGF_X' + 6588 | CORE_LOGF_X(54, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 's_RemoveCand': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12488,102 +12366,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' - 159 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:911:13: note: in expansion of macro 'CORE_LOGF' - 911 | CORE_LOGF(eLOG_Critical, ("s_LBOS_UrlReadAll: LBOS returned " - | ^~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:499:9: note: in expansion of macro 'CORE_LOGF_X' + 499 | CORE_LOGF_X(eNSub_Logic, eLOG_Critical, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 's_AddServerInfo': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12593,12 +12382,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:939:17: note: in expansion of macro 'CORE_LOG' - 939 | CORE_LOG(eLOG_Warning, "s_LBOS_UrlReadAll: Buffer " - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:575:13: note: in expansion of macro 'CORE_LOG_X' + 575 | CORE_LOG_X(eNSub_Alloc, eLOG_Critical, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 's_ParseExpires': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12608,13 +12398,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:953:9: note: in expansion of macro 'CORE_LOG' - 953 | CORE_LOG(eLOG_Warning, "s_LBOS_UrlReadAll: Buffer shrink error, using " - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_ResolveIPPort': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:615:9: note: in expansion of macro 'CORE_LOG_X' + 615 | CORE_LOG_X(eNSub_Logic, eLOG_Critical, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12624,12 +12413,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:985:9: note: in expansion of macro 'CORE_LOG' - 985 | CORE_LOG(eLOG_Critical, "s_LBOS_ResolveIPPort: No RAM. " - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:630:9: note: in expansion of macro 'CORE_LOGF_X' + 630 | CORE_LOGF_X(eNSub_Json, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12639,14 +12428,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1044:9: note: in expansion of macro 'CORE_LOG' - 1044 | CORE_LOG(eLOG_Critical, "s_LBOS_ResolveIPPort: No RAM. " - | ^~~~~~~~ -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_FillCandidates': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6595:9: note: in expansion of macro 'CORE_LOGF_X' + 6595 | CORE_LOGF_X(55, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12659,9 +12446,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1194:5: note: in expansion of macro 'CORE_LOGF_X' - 1194 | CORE_LOGF_X(1, eLOG_Trace, ("Trying to find servers of \"%s\" with " - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:675:13: note: in expansion of macro 'CORE_LOGF_X' + 675 | CORE_LOGF_X(eNSub_Json, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12674,8 +12461,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1200:9: note: in expansion of macro 'CORE_LOGF_X' - 1200 | CORE_LOGF_X(1, eLOG_Trace, ("No servers of \"%s\" found by LBOS", +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:696:9: note: in expansion of macro 'CORE_LOGF_X' + 696 | CORE_LOGF_X(eNSub_Json, eLOG_Error, | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -12689,9 +12476,55 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1205:5: note: in expansion of macro 'CORE_LOGF_X' - 1205 | CORE_LOGF_X(1, eLOG_Trace, ("Found %u servers of \"%s\" with " +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6603:9: note: in expansion of macro 'CORE_LOGF_X' + 6603 | CORE_LOGF_X(15, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 's_ReadFullResponse': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:735:9: note: in expansion of macro 'CORE_LOG_X' + 735 | CORE_LOG_X(eNSub_Logic, eLOG_Critical, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:740:9: note: in expansion of macro 'CORE_LOG_X' + 740 | CORE_LOG_X(eNSub_Logic, eLOG_Critical, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:751:13: note: in expansion of macro 'CORE_LOG_X' + 751 | CORE_LOG_X(eNSub_Alloc, eLOG_Critical, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12704,10 +12537,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1218:13: note: in expansion of macro 'CORE_LOGF_X' - 1218 | CORE_LOGF_X(1, eLOG_Warning, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:785:13: note: in expansion of macro 'CORE_LOGF_X' + 785 | CORE_LOGF_X(eNSub_HttpRead, eLOG_Error, | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_CheckAnnounceArgs': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12717,12 +12549,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1248:9: note: in expansion of macro 'CORE_LOG' - 1248 | CORE_LOG(eLOG_Critical, "Error with announcement, " - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:805:9: note: in expansion of macro 'CORE_LOG_X' + 805 | CORE_LOG_X(eNSub_TooLong, eLOG_Error, "Insufficient buffer size."); + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 's_ParseResponse': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12732,166 +12565,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1255:9: note: in expansion of macro 'CORE_LOG' - 1255 | CORE_LOG(eLOG_Critical, "Error with announcement, missing http:// or " - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/cgiapp.cpp:45: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/cgi_run.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:848:13: note: in expansion of macro 'CORE_LOG_X' + 848 | CORE_LOG_X(eNSub_Json, eLOG_Error, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12901,12 +12580,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1265:17: note: in expansion of macro 'CORE_LOG' - 1265 | CORE_LOG(eLOG_Critical, "Error with announcement, " - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:853:13: note: in expansion of macro 'CORE_LOG_X' + 853 | CORE_LOG_X(eNSub_Json, eLOG_Error, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12916,12 +12595,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1275:9: note: in expansion of macro 'CORE_LOG' - 1275 | CORE_LOG(eLOG_Critical, "Error with announcement, invalid port."); - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:859:13: note: in expansion of macro 'CORE_LOG_X' + 859 | CORE_LOG_X(eNSub_Json, eLOG_Error, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -12931,81 +12610,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1279:9: note: in expansion of macro 'CORE_LOG' - 1279 | CORE_LOG(eLOG_Critical, "Error with announcement, " - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:875:13: note: in expansion of macro 'CORE_LOG_X' + 875 | CORE_LOG_X(eNSub_Json, eLOG_Error, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13015,12 +12625,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1284:9: note: in expansion of macro 'CORE_LOG' - 1284 | CORE_LOG(eLOG_Critical, "Error with announcement, " - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:880:13: note: in expansion of macro 'CORE_LOGF_X' + 880 | CORE_LOGF_X(eNSub_NoService, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13030,31 +12640,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1289:9: note: in expansion of macro 'CORE_LOG' - 1289 | CORE_LOG(eLOG_Critical, "Error with announcement, " - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_CheckDeannounceArgs': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:888:13: note: in expansion of macro 'CORE_LOG_X' + 888 | CORE_LOG_X(eNSub_Json, eLOG_Error, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13064,12 +12655,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1303:9: note: in expansion of macro 'CORE_LOG' - 1303 | CORE_LOG(eLOG_Critical, "Invalid argument passed for de-announcement, " - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:935:17: note: in expansion of macro 'CORE_LOG_X' + 935 | CORE_LOG_X(eNSub_Json, eLOG_Error, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13079,12 +12670,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1309:9: note: in expansion of macro 'CORE_LOG' - 1309 | CORE_LOG(eLOG_Critical, "Invalid argument passed for de-announcement, " - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:943:17: note: in expansion of macro 'CORE_LOG_X' + 943 | CORE_LOG_X(eNSub_Json, eLOG_Error, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13094,12 +12685,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1314:9: note: in expansion of macro 'CORE_LOG' - 1314 | CORE_LOG(eLOG_Critical, "Invalid argument passed for de-announcement, " - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:956:17: note: in expansion of macro 'CORE_LOG_X' + 956 | CORE_LOG_X(eNSub_Json, eLOG_Error, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13109,23 +12700,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1319:9: note: in expansion of macro 'CORE_LOG' - 1319 | CORE_LOG(eLOG_Critical, "Invalid argument passed for de-announcement, " - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_Replace0000WithIP': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDIN/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:962:17: note: in expansion of macro 'CORE_LOGF_X' + 962 | CORE_LOGF_X(eNSub_Json, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' @@ -13134,21 +12715,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ - | FO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ - ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1404:9: note: in expansion of macro 'CORE_LOG' - 1404 | CORE_LOG(eLOG_Warning, "Failed memory allocation. Most likely, " - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:975:17: note: in expansion of macro 'CORE_LOGF_X' + 975 | CORE_LOGF_X(eNSub_Json, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13158,12 +12730,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1412:9: note: in expansion of macro 'CORE_LOG' - 1412 | CORE_LOG(eLOG_Warning, - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:1002:21: note: in expansion of macro 'CORE_LOGF_X' + 1002 | CORE_LOGF_X(eNSub_Json, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13173,13 +12745,57 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1419:9: note: in expansion of macro 'CORE_LOG' - 1419 | CORE_LOG(eLOG_Warning, - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_ConstructData': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:1027:21: note: in expansion of macro 'CORE_LOG_X' + 1027 | CORE_LOG_X(eNSub_Json, eLOG_Error, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:1037:21: note: in expansion of macro 'CORE_LOGF_X' + 1037 | CORE_LOGF_X(eNSub_Json, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:1054:17: note: in expansion of macro 'CORE_LOGF_X' + 1054 | CORE_LOGF_X(eNSub_Json, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:1077:21: note: in expansion of macro 'CORE_LOGF_X' + 1077 | CORE_LOGF_X(eNSub_Json, eLOG_Trace, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13192,10 +12808,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1563:9: note: in expansion of macro 'CORE_LOG_X' - 1563 | CORE_LOG_X(1, eLOG_Error, "Could not allocate memory for LBOS mapper"); - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_Initialize': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:1096:21: note: in expansion of macro 'CORE_LOG_X' + 1096 | CORE_LOG_X(eNSub_Json, eLOG_Trace, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13208,9 +12823,25 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1638:9: note: in expansion of macro 'CORE_LOG_X' - 1638 | CORE_LOG_X(1, eLOG_Trace, "No DTAB in registry"); - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:1101:21: note: in expansion of macro 'CORE_LOG_X' + 1101 | CORE_LOG_X(eNSub_Json, eLOG_Trace, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:1119:17: note: in expansion of macro 'CORE_LOG_X' + 1119 | CORE_LOG_X(eNSub_Alloc, eLOG_Critical, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_Wait': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13223,9 +12854,56 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1640:9: note: in expansion of macro 'CORE_LOGF_X' - 1640 | CORE_LOGF_X(1, eLOG_Trace, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:1136:17: note: in expansion of macro 'CORE_LOGF_X' + 1136 | CORE_LOGF_X(eNSub_BadData, eLOG_Warning, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:1149:17: note: in expansion of macro 'CORE_LOG_X' + 1149 | CORE_LOG_X(eNSub_Alloc, eLOG_Critical, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 's_GetDtabHeaderFromBuf': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:1194:13: note: in expansion of macro 'CORE_LOG_X' + 1194 | CORE_LOG_X(eNSub_Alloc, eLOG_Critical, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 's_UpdateDtabFromRegistry': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:1257:9: note: in expansion of macro 'CORE_LOG_X' + 1257 | CORE_LOG_X(eNSub_Alloc, eLOG_Critical, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13238,10 +12916,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1654:9: note: in expansion of macro 'CORE_LOGF_X' - 1654 | CORE_LOGF_X(1, eLOG_Warning, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6749:9: note: in expansion of macro 'CORE_LOGF_X' + 6749 | CORE_LOGF_X(56, eLOG_Error, | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_ParseHeader': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 's_ProcessDtab': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13251,16 +12929,25 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' - 159 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1702:9: note: in expansion of macro 'CORE_LOGF' - 1702 | CORE_LOGF(eLOG_Critical, ("s_LBOS_UrlReadAll: LBOS returned status " - | ^~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:1293:9: note: in expansion of macro 'CORE_LOG_X' + 1293 | CORE_LOG_X(eNSub_TooLong, eLOG_Error, "Dtab too long."); + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 's_Resolve': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/ncbires.cpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/user_agent.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -13336,23 +13023,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_Reset': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1765:17: note: in expansion of macro 'CORE_LOG' - 1765 | CORE_LOG(eLOG_Critical, "s_LBOS_Reset: No RAM. " - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 'SERV_LBOS_Open': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -13386,39 +13056,17 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1868:5: note: in expansion of macro 'CORE_LOG' - 1868 | CORE_LOG(eLOG_Error, "LBOS is deprecated, consider using LBSMD instead."); - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:1352:9: note: in expansion of macro 'CORE_LOG_X' + 1352 | CORE_LOG_X(eNSub_Logic, eLOG_Critical, + | ^~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_once.h:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c: In function 's_SetEndpoint': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 's_GetNextInfo': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13428,12 +13076,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1880:9: note: in expansion of macro 'CORE_LOG' - 1880 | CORE_LOG(eLOG_Warning, "Mask was provided instead of service name. " - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:203:9: note: in expansion of macro 'CORE_LOGF_X' + 203 | CORE_LOGF_X(eLSub_BadData, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13443,12 +13091,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1888:9: note: in expansion of macro 'CORE_LOG' - 1888 | CORE_LOG(eLOG_Warning, "\"iter->name\" is null, not able " - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:1426:9: note: in expansion of macro 'CORE_LOG_X' + 1426 | CORE_LOG_X(eNSub_Logic, eLOG_Critical, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13458,12 +13106,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1903:13: note: in expansion of macro 'CORE_LOG' - 1903 | CORE_LOG(eLOG_Warning, "Could not concatenate dbaf with service " - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:210:13: note: in expansion of macro 'CORE_LOG_X' + 210 | CORE_LOG_X(eLSub_BadData, eLOG_Error, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13473,12 +13121,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1918:9: note: in expansion of macro 'CORE_LOG' - 1918 | CORE_LOG(eLOG_Warning, - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:1431:9: note: in expansion of macro 'CORE_LOG_X' + 1431 | CORE_LOG_X(eNSub_Logic, eLOG_Critical, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 's_Reset': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13488,13 +13137,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1932:9: note: in expansion of macro 'CORE_LOG' - 1932 | CORE_LOG(eLOG_Critical, - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_Announce': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:1477:9: note: in expansion of macro 'CORE_LOG_X' + 1477 | CORE_LOG_X(eNSub_Logic, eLOG_Critical, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13504,12 +13152,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:2047:9: note: in expansion of macro 'CORE_LOG' - 2047 | CORE_LOG(eLOG_Warning, "Announce failed. No LBOS found."); - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:1487:17: note: in expansion of macro 'CORE_LOGF_X' + 1487 | CORE_LOGF_X(eNSub_Logic, eLOG_Critical, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 'SERV_NAMERD_Open': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13519,12 +13168,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' - 159 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:2052:9: note: in expansion of macro 'CORE_LOGF' - 2052 | CORE_LOGF(eLOG_Warning, ("Announce failed. " - | ^~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:221:13: note: in expansion of macro 'CORE_LOG_X' + 221 | CORE_LOG_X(eLSub_BadData, eLOG_Error, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13534,12 +13183,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:2061:13: note: in expansion of macro 'CORE_LOG' - 2061 | CORE_LOG(eLOG_Warning, "Failed memory allocation. Most likely, " - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:1542:9: note: in expansion of macro 'CORE_LOG_X' + 1542 | CORE_LOG_X(eNSub_Logic, eLOG_Critical, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13549,12 +13198,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' - 155 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:2071:13: note: in expansion of macro 'CORE_LOG' - 2071 | CORE_LOG(eLOG_Warning, "g_LBOS_Announce: LBOS answered 200 OK, but " - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:232:13: note: in expansion of macro 'CORE_LOG_X' + 232 | CORE_LOG_X(eLSub_BadData, eLOG_Error, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13564,13 +13213,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' - 159 | DO_CORE_LOG(0, 0, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:2084:9: note: in expansion of macro 'CORE_LOGF' - 2084 | CORE_LOGF(eLOG_Warning, ("Announce failed. " - | ^~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 'LBOS_Announce': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:1550:9: note: in expansion of macro 'CORE_LOG_X' + 1550 | CORE_LOG_X(eNSub_BadData, eLOG_Error, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c: In function 's_EndpointFromNetInfo': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13583,10 +13232,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:2150:13: note: in expansion of macro 'CORE_LOG_X' - 2150 | CORE_LOG_X(eLBOS_InvalidArgs, eLOG_Critical, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 'LBOS_AnnounceFromRegistry': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:271:17: note: in expansion of macro 'CORE_LOG_X' + 271 | CORE_LOG_X(eLSub_BadData, eLOG_Warning, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13596,26 +13244,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:2219:13: note: in expansion of macro 'CORE_LOGF_X' - 2219 | CORE_LOGF_X(eLBOS_InvalidArgs, eLOG_Warning, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:2226:53: warning: format '%d' expects argument of type 'int *', but argument 3 has type 'unsigned int *' [-Wformat=] - 2226 | if (strlen(port_str) > 5 || (sscanf(port_str, "%d", &port) != 1) || - | ~^ ~~~~~ - | | | - | | unsigned int * - | int * - | %d -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 'LBOS_Deannounce': -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_servicep.h:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lb.h:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' before C2X [-Wpedantic] - 91 | fSERV_IncludePrivate = 0x80000000, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:278:9: note: in expansion of macro 'CORE_LOG_X' + 278 | CORE_LOG_X(eLSub_BadData, eLOG_Error, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c: In function 's_EndpointFromRegistry': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13628,13 +13263,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:2341:13: note: in expansion of macro 'CORE_LOG_X' - 2341 | CORE_LOG_X(eLBOS_DNSResolve, eLOG_Critical, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 'LBOS_DeannounceAll': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' before C2X [-Wpedantic] - 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:1556:9: note: in expansion of macro 'CORE_LOG_X' + 1556 | CORE_LOG_X(eNSub_BadData, eLOG_Error, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13647,10 +13278,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:2399:9: note: in expansion of macro 'CORE_LOG_X' - 2399 | CORE_LOG_X(eLBOS_MemAlloc, eLOG_Warning, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:301:9: note: in expansion of macro 'CORE_LOG_X' + 301 | CORE_LOG_X(eLSub_Alloc, eLOG_Critical, | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_CheckConfArgs': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13663,8 +13293,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:2451:9: note: in expansion of macro 'CORE_LOG_X' - 2451 | CORE_LOG_X(eLBOS_InvalidArgs, eLOG_Warning, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:310:9: note: in expansion of macro 'CORE_LOG_X' + 310 | CORE_LOG_X(eLSub_Alloc, eLOG_Critical, | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -13678,29 +13308,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:2458:13: note: in expansion of macro 'CORE_LOGF_X' - 2458 | CORE_LOGF_X(eLBOS_InvalidArgs, eLOG_Warning, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6777:13: note: in expansion of macro 'CORE_LOGF_X' + 6777 | CORE_LOGF_X(57, eLOG_Warning, | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 'LBOS_ServiceVersionSet': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:2550:9: note: in expansion of macro 'CORE_LOG_X' - 2550 | CORE_LOG_X(eLBOS_InvalidArgs, eLOG_Warning, - | ^~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_once.h:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c: In function 's_SetEndpoint': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13713,8 +13323,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:203:9: note: in expansion of macro 'CORE_LOGF_X' - 203 | CORE_LOGF_X(eLSub_BadData, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:1564:9: note: in expansion of macro 'CORE_LOGF_X' + 1564 | CORE_LOGF_X(eNSub_BadData, eLOG_Error, | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -13728,9 +13338,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:210:13: note: in expansion of macro 'CORE_LOG_X' - 210 | CORE_LOG_X(eLSub_BadData, eLOG_Error, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:1573:9: note: in expansion of macro 'CORE_LOG_X' + 1573 | CORE_LOG_X(eNSub_BadData, eLOG_Error, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13743,9 +13353,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:221:13: note: in expansion of macro 'CORE_LOG_X' - 221 | CORE_LOG_X(eLSub_BadData, eLOG_Error, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:1580:9: note: in expansion of macro 'CORE_LOG_X' + 1580 | CORE_LOG_X(eNSub_Alloc, eLOG_Critical, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13758,25 +13368,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:232:13: note: in expansion of macro 'CORE_LOG_X' - 232 | CORE_LOG_X(eLSub_BadData, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:1592:13: note: in expansion of macro 'CORE_LOG_X' + 1592 | CORE_LOG_X(eNSub_Alloc, eLOG_Critical, "Couldn't create net_info."); | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c: In function 's_EndpointFromNetInfo': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] - 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' - 224 | _mess.func = CORE_CURRENT_FUNCTION; \ - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' - 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:271:17: note: in expansion of macro 'CORE_LOG_X' - 271 | CORE_LOG_X(eLSub_BadData, eLOG_Warning, - | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13789,10 +13383,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:278:9: note: in expansion of macro 'CORE_LOG_X' - 278 | CORE_LOG_X(eLSub_BadData, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:1602:9: note: in expansion of macro 'CORE_LOG_X' + 1602 | CORE_LOG_X(eNSub_Alloc, eLOG_Critical, "Couldn't clone net_info."); | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c: In function 's_EndpointFromRegistry': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13805,8 +13398,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:301:9: note: in expansion of macro 'CORE_LOG_X' - 301 | CORE_LOG_X(eLSub_Alloc, eLOG_Critical, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:319:9: note: in expansion of macro 'CORE_LOG_X' + 319 | CORE_LOG_X(eLSub_Alloc, eLOG_Critical, | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -13820,8 +13413,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:310:9: note: in expansion of macro 'CORE_LOG_X' - 310 | CORE_LOG_X(eLSub_Alloc, eLOG_Critical, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:328:9: note: in expansion of macro 'CORE_LOG_X' + 328 | CORE_LOG_X(eLSub_Alloc, eLOG_Critical, | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -13835,8 +13428,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:319:9: note: in expansion of macro 'CORE_LOG_X' - 319 | CORE_LOG_X(eLSub_Alloc, eLOG_Critical, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:1615:9: note: in expansion of macro 'CORE_LOG_X' + 1615 | CORE_LOG_X(eNSub_BadData, eLOG_Critical, | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -13850,8 +13443,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:328:9: note: in expansion of macro 'CORE_LOG_X' - 328 | CORE_LOG_X(eLSub_Alloc, eLOG_Critical, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:337:9: note: in expansion of macro 'CORE_LOG_X' + 337 | CORE_LOG_X(eLSub_Alloc, eLOG_Critical, | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -13865,9 +13458,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:337:9: note: in expansion of macro 'CORE_LOG_X' - 337 | CORE_LOG_X(eLSub_Alloc, eLOG_Critical, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:350:13: note: in expansion of macro 'CORE_LOG_X' + 350 | CORE_LOG_X(eLSub_BadData, eLOG_Warning, + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13880,9 +13473,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:350:13: note: in expansion of macro 'CORE_LOG_X' - 350 | CORE_LOG_X(eLSub_BadData, eLOG_Warning, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:356:9: note: in expansion of macro 'CORE_LOG_X' + 356 | CORE_LOG_X(eLSub_BadData, eLOG_Error, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c: In function 's_EndpointFromNamerd': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13892,13 +13486,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:356:9: note: in expansion of macro 'CORE_LOG_X' - 356 | CORE_LOG_X(eLSub_BadData, eLOG_Error, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c: In function 's_EndpointFromNamerd': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6791:13: note: in expansion of macro 'CORE_LOGF_X' + 6791 | CORE_LOGF_X(58, eLOG_Warning, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -13959,14 +13552,7 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:410:9: note: in expansion of macro 'CORE_LOG_X' 410 | CORE_LOG_X(eLSub_Alloc, eLOG_Critical, | ^~~~~~~~~~ -.c -o ncbi_ftp_connector.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_version.c -o ncbi_version.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_iprange.c -o ncbi_iprange.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_local.c -o ncbi_local.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_dispd.c -o ncbi_dispd.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c -o ncbi_lbos.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c -o ncbi_linkerd.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' @@ -13996,6 +13582,21 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:428:9: note: in expansion of macro 'CORE_LOG_X' 428 | CORE_LOG_X(eLSub_Alloc, eLOG_Critical, | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6805:17: note: in expansion of macro 'CORE_LOGF_X' + 6805 | CORE_LOGF_X(59, eLOG_Warning, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c: In function 's_Resolve': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -14052,6 +13653,21 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6814:17: note: in expansion of macro 'CORE_LOGF_X' + 6814 | CORE_LOGF_X(60, eLOG_Warning, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ @@ -14088,6 +13704,21 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:563:13: note: in expansion of macro 'CORE_LOG_X' 563 | CORE_LOG_X(eLSub_BadData, eLOG_Warning, | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6824:13: note: in expansion of macro 'CORE_LOGF_X' + 6824 | CORE_LOGF_X(61, eLOG_Warning, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c: In function 'LINKERD_GetHttpProxy': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -14174,6 +13805,21 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6834:9: note: in expansion of macro 'CORE_LOGF_X' + 6834 | CORE_LOGF_X(62, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ @@ -14195,6 +13841,24 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:676:13: note: in expansion of macro 'CORE_LOG_X' 676 | CORE_LOG_X(eLSub_Logic, eLOG_Critical, | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14255,6 +13919,7 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:710:13: note: in expansion of macro 'CORE_LOG_X' 710 | CORE_LOG_X(eLSub_BadData, eLOG_Error, | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_SetTimeout': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14279,6 +13944,21 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:6969:9: note: in expansion of macro 'CORE_LOGF_X' + 6969 | CORE_LOGF_X(63, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ @@ -14330,6 +14010,7 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:754:13: note: in expansion of macro 'CORE_LOG_X' 754 | CORE_LOG_X(eLSub_BadData, eLOG_Error, | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_GetTimeout': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14399,6 +14080,22 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7010:9: note: in expansion of macro 'CORE_LOGF_X' + 7010 | CORE_LOGF_X(64, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_Read': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ @@ -14450,19 +14147,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_linkerd.c:826:9: note: in expansion of macro 'CORE_LOG_X' 826 | CORE_LOG_X(eLSub_BadData, eLOG_Warning, "Unable to resolve endpoint."); | ^~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_servicep.h:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lb.h:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' before C2X [-Wpedantic] - 91 | fSERV_IncludePrivate = 0x80000000, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' before C2X [-Wpedantic] - 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ - | ^~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_once.h:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 's_CreateConnectorHttp': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14472,12 +14156,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:201:9: note: in expansion of macro 'CORE_LOG_X' - 201 | CORE_LOG_X(eNSub_Logic, eLOG_Critical, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7052:13: note: in expansion of macro 'CORE_LOGF_X' + 7052 | CORE_LOGF_X(65, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14487,13 +14171,15 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:206:9: note: in expansion of macro 'CORE_LOG_X' - 206 | CORE_LOG_X(eNSub_Logic, eLOG_Critical, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 's_CreateConnectorMemory': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7062:9: note: in expansion of macro 'CORE_LOGF_X' + 7062 | CORE_LOGF_X(66, eLOG_Error, + | ^~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:62, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 'g_LBOS_StringConcat': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14506,10 +14192,11 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:229:9: note: in expansion of macro 'CORE_LOG_X' - 229 | CORE_LOG_X(eNSub_Logic, eLOG_Critical, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:431:9: note: in expansion of macro 'CORE_LOG_X' + 431 | CORE_LOG_X(eLBOS_MemAlloc, eLOG_Critical, | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 's_Init': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_ReadLine': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 'g_LBOS_StringNConcat': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14522,10 +14209,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:273:13: note: in expansion of macro 'CORE_LOG_X' - 273 | CORE_LOG_X(eNSub_Libc, eLOG_Error, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 's_CONN_Create': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:456:9: note: in expansion of macro 'CORE_LOG_X' + 456 | CORE_LOG_X(eLBOS_MemAlloc, eLOG_Critical, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 'g_LBOS_RegGet': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14538,8 +14225,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:288:9: note: in expansion of macro 'CORE_LOG_X' - 288 | CORE_LOG_X(eNSub_Logic, eLOG_Critical, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:480:9: note: in expansion of macro 'CORE_LOG_X' + 480 | CORE_LOG_X(eLBOS_MemAlloc, eLOG_Critical, | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -14550,12 +14237,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:293:9: note: in expansion of macro 'CORE_LOG_X' - 293 | CORE_LOG_X(eNSub_Logic, eLOG_Critical, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7096:9: note: in expansion of macro 'CORE_LOGF_X' + 7096 | CORE_LOGF_X(125, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_Pushback': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14568,9 +14256,25 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:298:9: note: in expansion of macro 'CORE_LOG_X' - 298 | CORE_LOG_X(eNSub_Logic, eLOG_Critical, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:494:13: note: in expansion of macro 'CORE_LOG_X' + 494 | CORE_LOG_X(eLBOS_MemAlloc, eLOG_Warning, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 'g_LBOS_GetLBOSAddressEx': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:562:5: note: in expansion of macro 'CORE_LOG' + 562 | CORE_LOG(eLOG_Trace, "Getting LBOS addresses..."); + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14583,9 +14287,24 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:303:9: note: in expansion of macro 'CORE_LOG_X' - 303 | CORE_LOG_X(eNSub_Logic, eLOG_Critical, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:576:17: note: in expansion of macro 'CORE_LOG_X' + 576 | CORE_LOG_X(1, eLOG_Error, "Use of custom LBOS address " + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:163:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 163 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, 0, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:583:17: note: in expansion of macro 'CORE_LOG_ERRNO_X' + 583 | CORE_LOG_ERRNO_X(1, eLOG_Warning, errno, + | ^~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14598,9 +14317,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:312:13: note: in expansion of macro 'CORE_LOGF_X' - 312 | CORE_LOGF_X(eNSub_Connect, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7176:9: note: in expansion of macro 'CORE_LOGF_X' + 7176 | CORE_LOGF_X(67, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_Write': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14610,13 +14330,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:321:9: note: in expansion of macro 'CORE_LOG_X' - 321 | CORE_LOG_X(eNSub_Connect, eLOG_Error, "Unable to create connector."); - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 's_CONN_Destroy': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7233:17: note: in expansion of macro 'CORE_LOGF_X' + 7233 | CORE_LOGF_X(68, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14626,12 +14345,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:332:9: note: in expansion of macro 'CORE_LOG_X' - 332 | CORE_LOG_X(eNSub_Logic, eLOG_Critical, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:591:17: note: in expansion of macro 'CORE_LOGF_X' + 591 | CORE_LOGF_X(1, eLOG_Warning, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14641,13 +14360,43 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:338:9: note: in expansion of macro 'CORE_LOG_X' - 338 | CORE_LOG_X(eNSub_Logic, eLOG_Critical, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 's_UpdateDtab': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:602:17: note: in expansion of macro 'CORE_LOGF_X' + 602 | CORE_LOGF_X(1, eLOG_Note, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_ReadLbosresolver': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:175:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 175 | DO_CORE_LOG_ERRNO(0, 0, level, error, 0, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:721:9: note: in expansion of macro 'CORE_LOGF_ERRNO' + 721 | CORE_LOGF_ERRNO(eLOG_Warning, errno, + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:175:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 175 | DO_CORE_LOG_ERRNO(0, 0, level, error, 0, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:730:9: note: in expansion of macro 'CORE_LOGF_ERRNO' + 730 | CORE_LOGF_ERRNO(eLOG_Warning, errno, + | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14657,13 +14406,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:399:9: note: in expansion of macro 'CORE_LOG_X' - 399 | CORE_LOG_X(eNSub_Alloc, eLOG_Critical, "Couldn't alloc for dtab."); - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 's_GetReqMethod': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7260:13: note: in expansion of macro 'CORE_LOGF_X' + 7260 | CORE_LOGF_X(69, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14673,13 +14421,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:419:9: note: in expansion of macro 'CORE_LOG_X' - 419 | CORE_LOG_X(eNSub_Alloc, eLOG_Critical, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 's_GetScheme': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7270:9: note: in expansion of macro 'CORE_LOGF_X' + 7270 | CORE_LOGF_X(70, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_Abort': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14689,13 +14437,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' + 159 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:441:9: note: in expansion of macro 'CORE_LOG_X' - 441 | CORE_LOG_X(eNSub_Alloc, eLOG_Critical, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 's_GetHttpProxy': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:739:9: note: in expansion of macro 'CORE_LOGF' + 739 | CORE_LOGF(eLOG_Warning, + | ^~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_ConnectURL': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14705,12 +14453,20 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' + 159 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:462:13: note: in expansion of macro 'CORE_LOG_X' - 462 | CORE_LOG_X(eNSub_BadData, eLOG_Critical, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:823:5: note: in expansion of macro 'CORE_LOGF' + 823 | CORE_LOGF(eLOG_Trace, ("Parsing URL \"%s\"", url)); + | ^~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_servicep.h:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_localip.c:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' before C2X [-Wpedantic] + 91 | fSERV_IncludePrivate = 0x80000000, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' before C2X [-Wpedantic] + 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14720,13 +14476,19 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:473:9: note: in expansion of macro 'CORE_LOG_X' - 473 | CORE_LOG_X(eNSub_Alloc, eLOG_Critical, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:825:9: note: in expansion of macro 'CORE_LOG' + 825 | CORE_LOG(eLOG_Warning, "Cannot parse URL"); + | ^~~~~~~~ +compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c -o ncbi_namerd.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/parson.c -o parson.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_localip.c -o ncbi_localip.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket_cxx.cpp -o ncbi_socket_cxx.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_core_cxx.cpp -o ncbi_core_cxx.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/email_diag_handler.cpp -o email_diag_handler.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/b/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' @@ -14735,13 +14497,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:484:9: note: in expansion of macro 'CORE_LOG_X' - 484 | CORE_LOG_X(eNSub_Alloc, eLOG_Critical, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 's_RemoveCand': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7289:9: note: in expansion of macro 'CORE_LOGF_X' + 7289 | CORE_LOGF_X(71, eLOG_Warning, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14754,10 +14515,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:499:9: note: in expansion of macro 'CORE_LOGF_X' - 499 | CORE_LOGF_X(eNSub_Logic, eLOG_Critical, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7296:9: note: in expansion of macro 'CORE_LOGF_X' + 7296 | CORE_LOGF_X(72, eLOG_Error, | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 's_AddServerInfo': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14767,13 +14527,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' + 159 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:575:13: note: in expansion of macro 'CORE_LOG_X' - 575 | CORE_LOG_X(eNSub_Alloc, eLOG_Critical, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 's_ParseExpires': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:828:5: note: in expansion of macro 'CORE_LOGF' + 828 | CORE_LOGF(eLOG_Trace, ("Creating HTTP%s connector", + | ^~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14783,12 +14542,44 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:615:9: note: in expansion of macro 'CORE_LOG_X' - 615 | CORE_LOG_X(eNSub_Logic, eLOG_Critical, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:835:9: note: in expansion of macro 'CORE_LOG' + 835 | CORE_LOG(eLOG_Warning, "Cannot create HTTP connector"); + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:838:5: note: in expansion of macro 'CORE_LOG' + 838 | CORE_LOG(eLOG_Trace, "Creating connection"); + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:840:9: note: in expansion of macro 'CORE_LOG' + 840 | CORE_LOG(eLOG_Warning, "Cannot create connection"); + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_UrlReadAll': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_GetOSHandleEx': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14801,8 +14592,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:630:9: note: in expansion of macro 'CORE_LOGF_X' - 630 | CORE_LOGF_X(eNSub_Json, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7443:9: note: in expansion of macro 'CORE_LOGF_X' + 7443 | CORE_LOGF_X(73, eLOG_Error, | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -14813,12 +14604,43 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:675:13: note: in expansion of macro 'CORE_LOGF_X' - 675 | CORE_LOGF_X(eNSub_Json, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:899:9: note: in expansion of macro 'CORE_LOG' + 899 | CORE_LOG(eLOG_Critical, "s_LBOS_UrlReadAll: No RAM. " + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' + 159 | DO_CORE_LOG(0, 0, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:911:13: note: in expansion of macro 'CORE_LOGF' + 911 | CORE_LOGF(eLOG_Critical, ("s_LBOS_UrlReadAll: LBOS returned " + | ^~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:939:17: note: in expansion of macro 'CORE_LOG' + 939 | CORE_LOG(eLOG_Warning, "s_LBOS_UrlReadAll: Buffer " + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_SetCork': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14831,10 +14653,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:696:9: note: in expansion of macro 'CORE_LOGF_X' - 696 | CORE_LOGF_X(eNSub_Json, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7505:9: note: in expansion of macro 'CORE_LOGF_X' + 7505 | CORE_LOGF_X(158, eLOG_Warning, | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 's_ReadFullResponse': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14844,12 +14665,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:735:9: note: in expansion of macro 'CORE_LOG_X' - 735 | CORE_LOG_X(eNSub_Logic, eLOG_Critical, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:953:9: note: in expansion of macro 'CORE_LOG' + 953 | CORE_LOG(eLOG_Warning, "s_LBOS_UrlReadAll: Buffer shrink error, using " + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_ResolveIPPort': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14859,12 +14681,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:740:9: note: in expansion of macro 'CORE_LOG_X' - 740 | CORE_LOG_X(eNSub_Logic, eLOG_Critical, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:985:9: note: in expansion of macro 'CORE_LOG' + 985 | CORE_LOG(eLOG_Critical, "s_LBOS_ResolveIPPort: No RAM. " + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14874,12 +14696,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:751:13: note: in expansion of macro 'CORE_LOG_X' - 751 | CORE_LOG_X(eNSub_Alloc, eLOG_Critical, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1044:9: note: in expansion of macro 'CORE_LOG' + 1044 | CORE_LOG(eLOG_Critical, "s_LBOS_ResolveIPPort: No RAM. " + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14892,9 +14714,26 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:785:13: note: in expansion of macro 'CORE_LOGF_X' - 785 | CORE_LOGF_X(eNSub_HttpRead, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7512:9: note: in expansion of macro 'CORE_LOGF_X' + 7512 | CORE_LOGF_X(159, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7525:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 7525 | CORE_LOGF_ERRNO_EXX(160, eLOG_Warning, + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_DisableOSSendDelay': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_FillCandidates': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14904,13 +14743,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1194:5: note: in expansion of macro 'CORE_LOGF_X' + 1194 | CORE_LOGF_X(1, eLOG_Trace, ("Trying to find servers of \"%s\" with " | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:805:9: note: in expansion of macro 'CORE_LOG_X' - 805 | CORE_LOG_X(eNSub_TooLong, eLOG_Error, "Insufficient buffer size."); - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 's_ParseResponse': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14920,12 +14758,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:848:13: note: in expansion of macro 'CORE_LOG_X' - 848 | CORE_LOG_X(eNSub_Json, eLOG_Error, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7547:9: note: in expansion of macro 'CORE_LOGF_X' + 7547 | CORE_LOGF_X(156, eLOG_Warning, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14935,12 +14773,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:853:13: note: in expansion of macro 'CORE_LOG_X' - 853 | CORE_LOG_X(eNSub_Json, eLOG_Error, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1200:9: note: in expansion of macro 'CORE_LOGF_X' + 1200 | CORE_LOGF_X(1, eLOG_Trace, ("No servers of \"%s\" found by LBOS", + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14950,12 +14788,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1205:5: note: in expansion of macro 'CORE_LOGF_X' + 1205 | CORE_LOGF_X(1, eLOG_Trace, ("Found %u servers of \"%s\" with " | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:859:13: note: in expansion of macro 'CORE_LOG_X' - 859 | CORE_LOG_X(eNSub_Json, eLOG_Error, - | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14965,12 +14803,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:875:13: note: in expansion of macro 'CORE_LOG_X' - 875 | CORE_LOG_X(eNSub_Json, eLOG_Error, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1218:13: note: in expansion of macro 'CORE_LOGF_X' + 1218 | CORE_LOGF_X(1, eLOG_Warning, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_CheckAnnounceArgs': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14983,9 +14822,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:880:13: note: in expansion of macro 'CORE_LOGF_X' - 880 | CORE_LOGF_X(eNSub_NoService, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7554:9: note: in expansion of macro 'CORE_LOGF_X' + 7554 | CORE_LOGF_X(157, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -14995,12 +14834,27 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:888:13: note: in expansion of macro 'CORE_LOG_X' - 888 | CORE_LOG_X(eNSub_Json, eLOG_Error, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1248:9: note: in expansion of macro 'CORE_LOG' + 1248 | CORE_LOG(eLOG_Critical, "Error with announcement, " + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7567:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 7567 | CORE_LOGF_ERRNO_EXX(75, eLOG_Warning, + | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -15010,12 +14864,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:935:17: note: in expansion of macro 'CORE_LOG_X' - 935 | CORE_LOG_X(eNSub_Json, eLOG_Error, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1255:9: note: in expansion of macro 'CORE_LOG' + 1255 | CORE_LOG(eLOG_Critical, "Error with announcement, missing http:// or " + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -15025,12 +14879,28 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:943:17: note: in expansion of macro 'CORE_LOG_X' - 943 | CORE_LOG_X(eNSub_Json, eLOG_Error, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1265:17: note: in expansion of macro 'CORE_LOG' + 1265 | CORE_LOG(eLOG_Critical, "Error with announcement, " + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'DSOCK_CreateEx': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7618:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 7618 | CORE_LOGF_ERRNO_EXX(76, eLOG_Error, + | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -15040,12 +14910,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:956:17: note: in expansion of macro 'CORE_LOG_X' - 956 | CORE_LOG_X(eNSub_Json, eLOG_Error, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1275:9: note: in expansion of macro 'CORE_LOG' + 1275 | CORE_LOG(eLOG_Critical, "Error with announcement, invalid port."); + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -15055,12 +14925,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:962:17: note: in expansion of macro 'CORE_LOGF_X' - 962 | CORE_LOGF_X(eNSub_Json, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1279:9: note: in expansion of macro 'CORE_LOG' + 1279 | CORE_LOG(eLOG_Critical, "Error with announcement, " + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'DSOCK_Bind': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -15070,12 +14941,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:975:17: note: in expansion of macro 'CORE_LOGF_X' - 975 | CORE_LOGF_X(eNSub_Json, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1284:9: note: in expansion of macro 'CORE_LOG' + 1284 | CORE_LOG(eLOG_Critical, "Error with announcement, " + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -15088,9 +14959,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:1002:21: note: in expansion of macro 'CORE_LOGF_X' - 1002 | CORE_LOGF_X(eNSub_Json, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7738:9: note: in expansion of macro 'CORE_LOGF_X' + 7738 | CORE_LOGF_X(79, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -15100,12 +14971,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:1027:21: note: in expansion of macro 'CORE_LOG_X' - 1027 | CORE_LOG_X(eNSub_Json, eLOG_Error, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1289:9: note: in expansion of macro 'CORE_LOG' + 1289 | CORE_LOG(eLOG_Critical, "Error with announcement, " + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_CheckDeannounceArgs': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -15115,12 +14987,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:1037:21: note: in expansion of macro 'CORE_LOGF_X' - 1037 | CORE_LOGF_X(eNSub_Json, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1303:9: note: in expansion of macro 'CORE_LOG' + 1303 | CORE_LOG(eLOG_Critical, "Invalid argument passed for de-announcement, " + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -15130,12 +15002,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:1054:17: note: in expansion of macro 'CORE_LOGF_X' - 1054 | CORE_LOGF_X(eNSub_Json, eLOG_Error, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1309:9: note: in expansion of macro 'CORE_LOG' + 1309 | CORE_LOG(eLOG_Critical, "Invalid argument passed for de-announcement, " + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -15148,9 +15020,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:1077:21: note: in expansion of macro 'CORE_LOGF_X' - 1077 | CORE_LOGF_X(eNSub_Json, eLOG_Trace, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7745:9: note: in expansion of macro 'CORE_LOGF_X' + 7745 | CORE_LOGF_X(78, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -15160,12 +15032,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:1096:21: note: in expansion of macro 'CORE_LOG_X' - 1096 | CORE_LOG_X(eNSub_Json, eLOG_Trace, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1314:9: note: in expansion of macro 'CORE_LOG' + 1314 | CORE_LOG(eLOG_Critical, "Invalid argument passed for de-announcement, " + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -15175,12 +15047,28 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:1101:21: note: in expansion of macro 'CORE_LOG_X' - 1101 | CORE_LOG_X(eNSub_Json, eLOG_Trace, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1319:9: note: in expansion of macro 'CORE_LOG' + 1319 | CORE_LOG(eLOG_Critical, "Invalid argument passed for de-announcement, " + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_Replace0000WithIP': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7763:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 7763 | CORE_LOGF_ERRNO_EXX(80, error != SOCK_EADDRINUSE + | ^~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -15190,12 +15078,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:1119:17: note: in expansion of macro 'CORE_LOG_X' - 1119 | CORE_LOG_X(eNSub_Alloc, eLOG_Critical, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1404:9: note: in expansion of macro 'CORE_LOG' + 1404 | CORE_LOG(eLOG_Warning, "Failed memory allocation. Most likely, " + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -15205,12 +15093,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' - 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:1136:17: note: in expansion of macro 'CORE_LOGF_X' - 1136 | CORE_LOGF_X(eNSub_BadData, eLOG_Warning, - | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1412:9: note: in expansion of macro 'CORE_LOG' + 1412 | CORE_LOG(eLOG_Warning, + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -15220,13 +15108,29 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:1149:17: note: in expansion of macro 'CORE_LOG_X' - 1149 | CORE_LOG_X(eNSub_Alloc, eLOG_Critical, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 's_GetDtabHeaderFromBuf': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1419:9: note: in expansion of macro 'CORE_LOG' + 1419 | CORE_LOG(eLOG_Warning, + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7779:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 7779 | CORE_LOGF_ERRNO_EXX(114, eLOG_Error, + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'DSOCK_Connect': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_ConstructData': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -15239,10 +15143,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:1194:13: note: in expansion of macro 'CORE_LOG_X' - 1194 | CORE_LOG_X(eNSub_Alloc, eLOG_Critical, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 's_UpdateDtabFromRegistry': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1563:9: note: in expansion of macro 'CORE_LOG_X' + 1563 | CORE_LOG_X(1, eLOG_Error, "Could not allocate memory for LBOS mapper"); + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -15252,13 +15155,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:1257:9: note: in expansion of macro 'CORE_LOG_X' - 1257 | CORE_LOG_X(eNSub_Alloc, eLOG_Critical, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 's_ProcessDtab': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7808:9: note: in expansion of macro 'CORE_LOGF_X' + 7808 | CORE_LOGF_X(82, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_Initialize': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -15268,13 +15171,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:1293:9: note: in expansion of macro 'CORE_LOG_X' - 1293 | CORE_LOG_X(eNSub_TooLong, eLOG_Error, "Dtab too long."); - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 's_Resolve': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7815:9: note: in expansion of macro 'CORE_LOGF_X' + 7815 | CORE_LOGF_X(81, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -15284,13 +15186,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:1352:9: note: in expansion of macro 'CORE_LOG_X' - 1352 | CORE_LOG_X(eNSub_Logic, eLOG_Critical, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 's_GetNextInfo': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7834:9: note: in expansion of macro 'CORE_LOGF_X' + 7834 | CORE_LOGF_X(83, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -15303,8 +15204,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:1426:9: note: in expansion of macro 'CORE_LOG_X' - 1426 | CORE_LOG_X(eNSub_Logic, eLOG_Critical, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1638:9: note: in expansion of macro 'CORE_LOG_X' + 1638 | CORE_LOG_X(1, eLOG_Trace, "No DTAB in registry"); | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -15315,13 +15216,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:1431:9: note: in expansion of macro 'CORE_LOG_X' - 1431 | CORE_LOG_X(eNSub_Logic, eLOG_Critical, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 's_Reset': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1640:9: note: in expansion of macro 'CORE_LOGF_X' + 1640 | CORE_LOGF_X(1, eLOG_Trace, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -15331,12 +15231,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:1477:9: note: in expansion of macro 'CORE_LOG_X' - 1477 | CORE_LOG_X(eNSub_Logic, eLOG_Critical, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1654:9: note: in expansion of macro 'CORE_LOGF_X' + 1654 | CORE_LOGF_X(1, eLOG_Warning, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -15349,10 +15249,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:1487:17: note: in expansion of macro 'CORE_LOGF_X' - 1487 | CORE_LOGF_X(eNSub_Logic, eLOG_Critical, - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c: In function 'SERV_NAMERD_Open': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7847:9: note: in expansion of macro 'CORE_LOGF_X' + 7847 | CORE_LOGF_X(84, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_ParseHeader': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -15362,12 +15262,29 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' + 159 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:1542:9: note: in expansion of macro 'CORE_LOG_X' - 1542 | CORE_LOG_X(eNSub_Logic, eLOG_Critical, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1702:9: note: in expansion of macro 'CORE_LOGF' + 1702 | CORE_LOGF(eLOG_Critical, ("s_LBOS_UrlReadAll: LBOS returned status " + | ^~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_Reset': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7876:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 7876 | CORE_LOGF_ERRNO_EXX(85, eLOG_Error, + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'DSOCK_WaitMsg': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -15377,12 +15294,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:1550:9: note: in expansion of macro 'CORE_LOG_X' - 1550 | CORE_LOG_X(eNSub_BadData, eLOG_Error, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1765:17: note: in expansion of macro 'CORE_LOG' + 1765 | CORE_LOG(eLOG_Critical, "s_LBOS_Reset: No RAM. " + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 'SERV_LBOS_Open': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -15392,12 +15310,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:1556:9: note: in expansion of macro 'CORE_LOG_X' - 1556 | CORE_LOG_X(eNSub_BadData, eLOG_Error, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1868:5: note: in expansion of macro 'CORE_LOG' + 1868 | CORE_LOG(eLOG_Error, "LBOS is deprecated, consider using LBSMD instead."); + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -15410,8 +15328,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:1564:9: note: in expansion of macro 'CORE_LOGF_X' - 1564 | CORE_LOGF_X(eNSub_BadData, eLOG_Error, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7904:9: note: in expansion of macro 'CORE_LOGF_X' + 7904 | CORE_LOGF_X(96, eLOG_Error, | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -15422,12 +15340,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:1573:9: note: in expansion of macro 'CORE_LOG_X' - 1573 | CORE_LOG_X(eNSub_BadData, eLOG_Error, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7911:9: note: in expansion of macro 'CORE_LOGF_X' + 7911 | CORE_LOGF_X(95, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -15437,12 +15355,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:1580:9: note: in expansion of macro 'CORE_LOG_X' - 1580 | CORE_LOG_X(eNSub_Alloc, eLOG_Critical, - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1880:9: note: in expansion of macro 'CORE_LOG' + 1880 | CORE_LOG(eLOG_Warning, "Mask was provided instead of service name. " + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -15452,12 +15370,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:1592:13: note: in expansion of macro 'CORE_LOG_X' - 1592 | CORE_LOG_X(eNSub_Alloc, eLOG_Critical, "Couldn't create net_info."); - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1888:9: note: in expansion of macro 'CORE_LOG' + 1888 | CORE_LOG(eLOG_Warning, "\"iter->name\" is null, not able " + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'DSOCK_RecvMsg': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -15467,12 +15386,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:1602:9: note: in expansion of macro 'CORE_LOG_X' - 1602 | CORE_LOG_X(eNSub_Alloc, eLOG_Critical, "Couldn't clone net_info."); - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7964:9: note: in expansion of macro 'CORE_LOGF_X' + 7964 | CORE_LOGF_X(93, eLOG_Error, + | ^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ | ^~~~~~~~~~~~~~~~~~~ @@ -15482,29 +15401,289 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' - 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c:1615:9: note: in expansion of macro 'CORE_LOG_X' - 1615 | CORE_LOG_X(eNSub_BadData, eLOG_Critical, - | ^~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_servicep.h:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_localip.c:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' before C2X [-Wpedantic] - 91 | fSERV_IncludePrivate = 0x80000000, - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:92:31: warning: ISO C restricts enumerator values to range of 'int' before C2X [-Wpedantic] - 92 | fSERV_Promiscuous = 0xF8000000 /**< Evrthng and the kitchen sink */ - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/parson.c: In function 'x_json_object_add': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/parson.c:135:5: warning: '__builtin_strncpy' output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] - 135 | strncpy(output_string, string, n); - | ^ -In function 'parson_strdup', - inlined from 'x_json_object_add' at /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/parson.c:318:28: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/parson.c:140:12: note: length computed here - 140 | return parson_strndup(string, strlen(string)); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1903:13: note: in expansion of macro 'CORE_LOG' + 1903 | CORE_LOG(eLOG_Warning, "Could not concatenate dbaf with service " + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1918:9: note: in expansion of macro 'CORE_LOG' + 1918 | CORE_LOG(eLOG_Warning, + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:7971:9: note: in expansion of macro 'CORE_LOGF_X' + 7971 | CORE_LOGF_X(92, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'DSOCK_SendMsg': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:1932:9: note: in expansion of macro 'CORE_LOG' + 1932 | CORE_LOG(eLOG_Critical, + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:8008:9: note: in expansion of macro 'CORE_LOGF_X' + 8008 | CORE_LOGF_X(87, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_Announce': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:2047:9: note: in expansion of macro 'CORE_LOG' + 2047 | CORE_LOG(eLOG_Warning, "Announce failed. No LBOS found."); + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:8015:9: note: in expansion of macro 'CORE_LOGF_X' + 8015 | CORE_LOGF_X(86, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'DSOCK_WipeMsg': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:8047:9: note: in expansion of macro 'CORE_LOGF_X' + 8047 | CORE_LOGF_X(98, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' + 159 | DO_CORE_LOG(0, 0, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:2052:9: note: in expansion of macro 'CORE_LOGF' + 2052 | CORE_LOGF(eLOG_Warning, ("Announce failed. " + | ^~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:2061:13: note: in expansion of macro 'CORE_LOG' + 2061 | CORE_LOG(eLOG_Warning, "Failed memory allocation. Most likely, " + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:8054:9: note: in expansion of macro 'CORE_LOGF_X' + 8054 | CORE_LOGF_X(97, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:8074:9: note: in expansion of macro 'CORE_LOGF_X' + 8074 | CORE_LOGF_X(99, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'DSOCK_SetBroadcast': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:155:5: note: in expansion of macro 'DO_CORE_LOG' + 155 | DO_CORE_LOG(0, 0, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:2071:13: note: in expansion of macro 'CORE_LOG' + 2071 | CORE_LOG(eLOG_Warning, "g_LBOS_Announce: LBOS answered 200 OK, but " + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' + 159 | DO_CORE_LOG(0, 0, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:2084:9: note: in expansion of macro 'CORE_LOGF' + 2084 | CORE_LOGF(eLOG_Warning, ("Announce failed. " + | ^~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 'LBOS_Announce': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:8092:9: note: in expansion of macro 'CORE_LOGF_X' + 8092 | CORE_LOGF_X(101, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:8099:9: note: in expansion of macro 'CORE_LOGF_X' + 8099 | CORE_LOGF_X(100, eLOG_Error, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:2150:13: note: in expansion of macro 'CORE_LOG_X' + 2150 | CORE_LOG_X(eLBOS_InvalidArgs, eLOG_Critical, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 'LBOS_AnnounceFromRegistry': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:8119:13: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 8119 | CORE_LOGF_ERRNO_EXX(102, eLOG_Error, + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_SetReuseAddress': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:2219:13: note: in expansion of macro 'CORE_LOGF_X' + 2219 | CORE_LOGF_X(eLBOS_InvalidArgs, eLOG_Warning, + | ^~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_core_cxx.cpp:40: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -15615,38 +15794,159 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namerd.c -o ncbi_namerd.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/parson.c -o parson.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_localip.c -o ncbi_localip.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket_cxx.cpp -o ncbi_socket_cxx.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_core_cxx.cpp -o ncbi_core_cxx.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/email_diag_handler.cpp -o email_diag_handler.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/b/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/parson.c: In function 'x_json_value_init_string': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/parson.c:135:5: warning: '__builtin_strncpy' output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] - 135 | strncpy(output_string, string, n); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/parson.c:1119:18: note: length computed here - 1119 | string_len = strlen(string); - | ^~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/parson.c: In function 'x_json_parse_string_with_comments': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:243:5: note: in expansion of macro 'DO_CORE_LOG_X' + 243 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, error, descr, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:183:5: note: in expansion of macro 'DO_CORE_LOG_ERRNO' + 183 | DO_CORE_LOG_ERRNO(NCBI_C_ERRCODE_X, subcode, level, error, descr, \ + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:8285:9: note: in expansion of macro 'CORE_LOGF_ERRNO_EXX' + 8285 | CORE_LOGF_ERRNO_EXX(74, eLOG_Warning, + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:2226:53: warning: format '%d' expects argument of type 'int *', but argument 3 has type 'unsigned int *' [-Wformat=] + 2226 | if (strlen(port_str) > 5 || (sscanf(port_str, "%d", &port) != 1) || + | ~^ ~~~~~ + | | | + | | unsigned int * + | int * + | %d +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 'LBOS_Deannounce': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:2341:13: note: in expansion of macro 'CORE_LOG_X' + 2341 | CORE_LOG_X(eLBOS_DNSResolve, eLOG_Critical, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 'LBOS_DeannounceAll': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:2399:9: note: in expansion of macro 'CORE_LOG_X' + 2399 | CORE_LOG_X(eLBOS_MemAlloc, eLOG_Warning, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 's_LBOS_CheckConfArgs': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:2451:9: note: in expansion of macro 'CORE_LOG_X' + 2451 | CORE_LOG_X(eLBOS_InvalidArgs, eLOG_Warning, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:151:5: note: in expansion of macro 'DO_CORE_LOG' + 151 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:2458:13: note: in expansion of macro 'CORE_LOGF_X' + 2458 | CORE_LOGF_X(eLBOS_InvalidArgs, eLOG_Warning, + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c: In function 'LBOS_ServiceVersionSet': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c: In function 'SOCK_SetupSSLInternal': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:147:5: note: in expansion of macro 'DO_CORE_LOG' + 147 | DO_CORE_LOG(NCBI_C_ERRCODE_X, subcode, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos.c:2550:9: note: in expansion of macro 'CORE_LOG_X' + 2550 | CORE_LOG_X(eLBOS_InvalidArgs, eLOG_Warning, + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] + 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:224:33: note: in expansion of macro 'CORE_CURRENT_FUNCTION' + 224 | _mess.func = CORE_CURRENT_FUNCTION; \ + | ^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:239:5: note: in expansion of macro 'DO_CORE_LOG_X' + 239 | DO_CORE_LOG_X(code, subcode, level, message, dynamic, 0, 0, 0, 0) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_priv.h:159:5: note: in expansion of macro 'DO_CORE_LOG' + 159 | DO_CORE_LOG(0, 0, level, \ + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_socket.c:8674:13: note: in expansion of macro 'CORE_LOGF' + 8674 | CORE_LOGF(eLOG_Critical, ("%s reset SSL while it is in use",verb)); + | ^~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/parson.c: In function 'x_json_object_add': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/parson.c:135:5: warning: '__builtin_strncpy' output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 135 | strncpy(output_string, string, n); | ^ In function 'parson_strdup', - inlined from 'x_json_parse_string_with_comments' at /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/parson.c:913:27: + inlined from 'x_json_object_add' at /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/parson.c:318:28: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/parson.c:140:12: note: length computed here 140 | return parson_strndup(string, strlen(string)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/parson.c: In function 'x_json_value_deep_copy': +nclude /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/composition_adjustment/optimize_target_freq.c -o optimize_target_freq.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/composition_adjustment/redo_alignment.c -o redo_alignment.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/composition_adjustment/smith_waterman.c -o smith_waterman.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/composition_adjustment/unified_pvalues.c -o unified_pvalues.o +/bin/rm -f libcomposition_adjustment.so .libcomposition_adjustment.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libcomposition_adjustment.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC compo_heap.o compo_mode_condition.o composition_adjustment.o matrix_frequency_data.o nlm_linear_algebra.o optimize_target_freq.o redo_alignment.o smith_waterman.o unified_pvalues.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcomposition_adjustment.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libcomposition_adjustment.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libcomposition_adjustment.so +/bin/ln -f .composition_adjustment.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.composition_adjustment.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/parson.c: In function 'x_json_value_init_string': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/parson.c:135:5: warning: '__builtin_strncpy' output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 135 | strncpy(output_string, string, n); | ^ -In function 'parson_strdup', - inlined from 'x_json_value_deep_copy' at /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/parson.c:1213:32: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/parson.c:140:12: note: length computed here - 140 | return parson_strndup(string, strlen(string)); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/parson.c:1119:18: note: length computed here + 1119 | string_len = strlen(string); + | ^~~~~~~~~~~~~~ +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +uild/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_conn_streambuf.cpp -o ncbi_conn_streambuf.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_conn_stream.cpp -o ncbi_conn_stream.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_conn_test.cpp -o ncbi_conn_test.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_misc.cpp -o ncbi_misc.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namedpipe.cpp -o ncbi_namedpipe.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namedpipe_connector.cpp -o ncbi_namedpipe_connector.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_pipe.cpp -o ncbi_pipe.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ @@ -15680,533 +15980,32 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/sequtil' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/sequtil/sequtil.cpp -o sequtil.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/sequtil/sequtil_convert.cpp -o sequtil_convert.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/sequtil/sequtil_convert_imp.cpp -o sequtil_convert_imp.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/sequtil/sequtil_manip.cpp -o sequtil_manip.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/sequtil/sequtil_tables.cpp -o sequtil_tables.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/sequtil/sequtil_shared.cpp -o sequtil_shared.o -/bin/rm -f libsequtil.so .libsequtil.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libsequtil.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-piILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/typeref.cpp -o typeref.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/typemap.cpp -o typemap.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/stdtypes.cpp -o stdtypes.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/enumerated.cpp -o enumerated.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/ptrinfo.cpp -o ptrinfo.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/autoptrinfo.cpp -o autoptrinfo.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/continfo.cpp -o continfo.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blaste-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC sequtil.o sequtil_convert.o sequtil_convert_imp.o sequtil_manip.o sequtil_tables.o sequtil_shared.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsequtil.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libsequtil.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libsequtil.so -/bin/ln -f .sequtil.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.sequtil.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/sequtil' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/sequtil' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/logging' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/logging/message.cpp -o message.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/logging/listener.cpp -o listener.o -/bin/rm -f libxlogging.so .libxlogging.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libxlogging.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC message.o listener.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxlogging.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libxlogging.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxlogging.so -/bin/ln -f .xlogging.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xlogging.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/logging' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/logging' -uild/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_conn_streambuf.cpp -o ncbi_conn_streambuf.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_conn_stream.cpp -o ncbi_conn_stream.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_conn_test.cpp -o ncbi_conn_test.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_misc.cpp -o ncbi_misc.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namedpipe.cpp -o ncbi_namedpipe.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_namedpipe_connector.cpp -o ncbi_namedpipe_connector.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_pipe.cpp -o ncbi_pipe.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/typeref.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialdef.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/typeref.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/typeref.cpp:33: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp_cached.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/cgiapp_cached.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/typeinfo.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbitime.hpp:65, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/interprocess_lock.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_process.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbithr.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/typeinfo.cpp:35: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -CE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/cgi_run.cpp -o cgi_run.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/cgi_util.cpp -o cgi_util.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/cgi_serial.cpp -o cgi_serial.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/cgi_session.cpp -o cgi_session.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/cgi_exception.cpp -o cgi_exception.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/cgiapp_cached.cpp -o cgiapp_cached.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/cgi_entry_reader.cpp -o cgi_entry_reader.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/user_agent.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/profile' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/profile/rtprofile.cpp -o rtprofile.o -/bin/rm -f libutrtprof.so .libutrtprof.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libutrtprof.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC rtprofile.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libutrtprof.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libutrtprof.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libutrtprof.so -/bin/ln -f .utrtprof.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.utrtprof.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/profile' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/profile' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_pipe.cpp: In constructor 'ncbi::CPipe::CPipe(const std::string&, const std::vector >&, TCreateFlags, const std::string&, const char* const*, size_t)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_pipe.cpp:1856:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1856 | auto_ptr pipe_handle_ptr(new CPipeHandle); - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/error_codes.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_pipe.cpp:40: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/stltypes.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypesimpl.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/stltypes.cpp:34: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos_cxx.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/stdtypes.cpp: In static member function 'static void ncbi::CPrimitiveTypeFunctions::Skip(ncbi::CObjectIStream&, ncbi::TTypeInfo) [with T = long double]': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/stdtypes.cpp:147:23: warning: 'data' may be used uninitialized [-Wmaybe-uninitialized] - 147 | in.SkipStd(data); - | ~~~~~~~~~~^~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/stdtypes.cpp:147:23: note: by argument 2 of type 'const long double&' to 'void (ncbi::CObjectIStream::)(const long double&)' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/stdtypes.cpp:146:25: note: 'data' declared here - 146 | TObjectType data; - | ^~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/parson.c: In function 'x_json_parse_string_with_comments': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/parson.c:135:5: warning: '__builtin_strncpy' output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] + 135 | strncpy(output_string, string, n); + | ^ +In function 'parson_strdup', + inlined from 'x_json_parse_string_with_comments' at /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/parson.c:913:27: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/parson.c:140:12: note: length computed here + 140 | return parson_strndup(string, strlen(string)); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/parson.c: In function 'x_json_value_deep_copy': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/parson.c:135:5: warning: '__builtin_strncpy' output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] + 135 | strncpy(output_string, string, n); + | ^ +In function 'parson_strdup', + inlined from 'x_json_value_deep_copy' at /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/parson.c:1213:32: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/parson.c:140:12: note: length computed here + 140 | return parson_strndup(string, strlen(string)); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_pipe_connector.cpp -o ncbi_pipe_connector.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_conn_reader_writer.cpp -o ncbi_conn_reader_writer.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_userhost.cpp -o ncbi_userhost.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_http_session.cpp -o ncbi_http_session.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos_cxx.cpp -o ncbi_lbos_cxx.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_monkey.cpp -o ncbi_monkey.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproduciblmake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/gene_info_reader/gene_info.cpp -o gene_info.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp -o gene_info_reader.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/gene_info_reader/file_utils.cpp -o file_utils.o -/bin/rm -f libgene_info.so .libgene_info.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libgene_info.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC gene_info.o gene_info_reader.o file_utils.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgene_info.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libgene_info.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libgene_info.so -/bin/ln -f .gene_info.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.gene_info.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' -cd objtools/blast/gene_info_reader/unit_test/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=gene_info_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/gene_info_reader/unit_test TMPL=gene_info_unit_test -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/stltypes.cpp -o stltypes.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/memberid.cpp -o memberid.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/memberlist.cpp -o memberlist.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/item.cpp -o item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/classinfob.cpp -o classinfob.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/member.cpp -o member.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/gene_info_reader/unit_test/gene_info_test.cpp:31: +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproduciblIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_lbos_cxx.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -16315,6 +16114,16 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/logging' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/logging/message.cpp -o message.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/logging/listener.cpp -o listener.o +/bin/rm -f libxlogging.so .libxlogging.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libxlogging.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC message.o listener.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxlogging.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libxlogging.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxlogging.so +/bin/ln -f .xlogging.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xlogging.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/logging' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/logging' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_gnutls.c:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connssl.h:48:25: warning: ISO C restricts enumerator values to range of 'int' before C2X [-Wpedantic] 48 | eNcbiCred_MbedTls = 0xC12CC114 @@ -16423,14 +16232,7 @@ 339 | CORE_LOGF(eLOG_Error, | ^~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_mbedtls.c: In function 's_MbedTlsWrite': -e-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_cxx.cpp -o ncbi_service_cxx.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_localip_cxx.cpp -o ncbi_localip_cxx.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_blowfish.c -o ncbi_blowfish.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_usage_report.cpp -o ncbi_usage_report.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/connect_misc.cpp -o connect_misc.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_gnutls.c -o ncbi_gnutls.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_mbedtls.c -o ncbi_mbedtls.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build//build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_mbedtls.c:551:9: warning: 'mbedtls_ssl_get_max_frag_len' is deprecated [-Wdeprecated-declarations] +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_mbedtls.c:551:9: warning: 'mbedtls_ssl_get_max_frag_len' is deprecated [-Wdeprecated-declarations] 551 | = mbedtls_ssl_get_max_frag_len((mbedtls_ssl_context*) session); | ^ In file included from /usr/include/mbedtls/debug.h:19, @@ -16438,6 +16240,17 @@ /usr/include/mbedtls/ssl.h:3831:27: note: declared here 3831 | MBEDTLS_DEPRECATED size_t mbedtls_ssl_get_max_frag_len( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +e-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_service_cxx.cpp -o ncbi_service_cxx.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_localip_cxx.cpp -o ncbi_localip_cxx.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_blowfish.c -o ncbi_blowfish.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_usage_report.cpp -o ncbi_usage_report.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/connect_misc.cpp -o connect_misc.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_gnutls.c -o ncbi_gnutls.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_mbedtls.c -o ncbi_mbedtls.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_tls.c:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connssl.h:48:25: warning: ISO C restricts enumerator values to range of 'int' before C2X [-Wpedantic] + 48 | eNcbiCred_MbedTls = 0xC12CC114 + | ^~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_mbedtls.c: In function 's_MbedTlsInit': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_util.h:166:34: warning: ISO C does not support '__PRETTY_FUNCTION__' predefined identifier [-Wpedantic] 166 | # define CORE_CURRENT_FUNCTION __PRETTY_FUNCTION__ @@ -16454,10 +16267,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_mbedtls.c:704:9: note: in expansion of macro 'CORE_LOGF' 704 | CORE_LOGF(level, ("%s V%s (LogLevel=%d)", | ^~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_tls.c:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_connssl.h:48:25: warning: ISO C restricts enumerator values to range of 'int' before C2X [-Wpedantic] - 48 | eNcbiCred_MbedTls = 0xC12CC114 - | ^~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_servicep.h:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_tls.c:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/ncbi_service.h:91:31: warning: ISO C restricts enumerator values to range of 'int' before C2X [-Wpedantic] @@ -16531,8 +16340,42 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_tls.c:97:13: note: in expansion of macro 'CORE_LOG' 97 | CORE_LOG(eLOG_Critical, "No TLS support included in this build"); | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_pipe.cpp: In constructor 'ncbi::CPipe::CPipe(const std::string&, const std::vector >&, TCreateFlags, const std::string&, const char* const*, size_t)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_pipe.cpp:1856:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1856 | auto_ptr pipe_handle_ptr(new CPipeHandle); + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/error_codes.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_pipe.cpp:40: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +ds/c++/src/serial/classinfo.cpp -o classinfo.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/variant.cpp -o variant.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/choice.cpp -o choice.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/choiceptr.cpp -o choiceptr.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/aliasinfo.cpp -o aliasinfo.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objistr.cpp -o objistr.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objostr.cpp -o objostr.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objistr.cpp:62: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objistr.cpp:35: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/classinfob.cpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objostr.cpp:62: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -16540,11 +16383,190 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/classinfob.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objostr.cpp:35: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objcopy.cpp:48: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objcopy.cpp:35: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/serial.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/serial.cpp:34: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/gene_info_reader/gene_info.cpp -o gene_info.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/gene_info_reader/gene_info_reader.cpp -o gene_info_reader.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=GENEINFO -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/gene_info_reader/file_utils.cpp -o file_utils.o +/bin/rm -f libgene_info.so .libgene_info.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libgene_info.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC gene_info.o gene_info_reader.o file_utils.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgene_info.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libgene_info.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libgene_info.so +/bin/ln -f .gene_info.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.gene_info.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' +AD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objcopy.cpp -o objcopy.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/iterator.cpp -o iterator.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/serial.cpp -o serial.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/delaybuf.cpp -o delaybuf.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/pack_string.cpp -o pack_string.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/exception.cpp -o exception.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objhook.cpp -o objhook.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' +cd objtools/blast/gene_info_reader/unit_test/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=gene_info_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/gene_info_reader/unit_test TMPL=gene_info_unit_test -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/gene_info_reader/unit_test/gene_info_test.cpp:31: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/sequtil' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/sequtil/sequtil.cpp -o sequtil.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/sequtil/sequtil_convert.cpp -o sequtil_convert.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/sequtil/sequtil_convert_imp.cpp -o sequtil_convert_imp.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/sequtil/sequtil_manip.cpp -o sequtil_manip.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/sequtil/sequtil_tables.cpp -o sequtil_tables.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/sequtil/sequtil_shared.cpp -o sequtil_shared.o +/bin/rm -f libsequtil.so .libsequtil.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libsequtil.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC sequtil.o sequtil_convert.o sequtil_convert_imp.o sequtil_manip.o sequtil_tables.o sequtil_shared.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsequtil.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libsequtil.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libsequtil.so +/bin/ln -f .sequtil.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.sequtil.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/sequtil' +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/member.cpp:45: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; @@ -16591,39 +16613,6 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -ds/c++/src/serial/classinfo.cpp -o classinfo.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/variant.cpp -o variant.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/choice.cpp -o choice.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/choiceptr.cpp -o choiceptr.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/aliasinfo.cpp -o aliasinfo.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objistr.cpp -o objistr.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objostr.cpp -o objostr.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREmake[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' --D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/html/components.cpp -o components.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/html/commentdiag.cpp -o commentdiag.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/html/indentstream.cpp -o indentstream.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/html/html_exception.cpp -o html_exception.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/html/writer_htmlenc.cpp -o writer_htmlenc.o -/bin/rm -f libxhtml.so .libxhtml.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libxhtml.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC node.o html.o htmlhelper.o page.o pager.o selection.o components.o commentdiag.o indentstream.o html_exception.o writer_htmlenc.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxhtml.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libxhtml.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxhtml.so -/bin/ln -f .xhtml.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xhtml.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/html' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/html' -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/variant.cpp:47: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/variant.cpp:35: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/gene_info_reader/unit_test/gene_info_test.cpp: In member function 'void gene_info::s_MainInfoReaderTest::test_method()': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/gene_info_reader/unit_test/gene_info_test.cpp:328:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 328 | auto_ptr fileReader1(pReader1); @@ -16650,41 +16639,25 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/sequtil' +strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objlist.cpp -o objlist.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objstack.cpp -o objstack.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objostrasn.cpp -o objostrasn.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objistrasn.cpp -o objistrasn.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objostrasnb.cpp -o objostrasnb.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objistrasnb.cpp -o objistrasnb.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objostrxml.cpp -o objostrxml.o +/usrmake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/profile' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/profile/rtprofile.cpp -o rtprofile.o +/bin/rm -f libutrtprof.so .libutrtprof.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libutrtprof.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC rtprofile.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libutrtprof.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libutrtprof.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libutrtprof.so +/bin/ln -f .utrtprof.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.utrtprof.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/profile' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/profile' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objistr.cpp:62: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objistr.cpp:35: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objostr.cpp:62: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objostr.cpp:35: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -AD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objcopy.cpp -o objcopy.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/iterator.cpp -o iterator.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/serial.cpp -o serial.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/delaybuf.cpp -o delaybuf.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/pack_string.cpp -o pack_string.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/exception.cpp -o exception.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objhook.cpp -o objhook.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objcopy.cpp:48: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/variant.cpp:47: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -16692,12 +16665,19 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objcopy.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/variant.cpp:35: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=gene_info_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/gene_info_reader/unit_test/gene_info_test.cpp -o gene_info_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie gene_info_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lgene_info -lxncbi -lm -lpthread -o gene_info_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f gene_info_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f gene_info_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/gene_info_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/serial.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/stltypes.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -16705,26 +16685,12 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/serial.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypesimpl.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/stltypes.cpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/user_agent.cpp -o user_agent.o -/bin/rm -f libxcgi.so .libxcgi.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libxcgi.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_run.o cgi_util.o cgi_serial.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxutil -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcgi.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libxcgi.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxcgi.so -/bin/ln -f .xcgi.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xcgi.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' -strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objlist.cpp -o objlist.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objstack.cpp -o objstack.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objostrasn.cpp -o objostrasn.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objistrasn.cpp -o objistrasn.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objostrasnb.cpp -o objostrasnb.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objistrasnb.cpp -o objistrasnb.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objostrxml.cpp -o objostrxml.o -/usrreproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_tls.c -o ncbi_tls.o +reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/ncbi_tls.c -o ncbi_tls.o /bin/rm -f libxconnect.so .libxconnect.so.stamp /usr/bin/g++ -std=gnu++14 -shared -o libxconnect.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -Wl,--as-needed -fPIC ncbi_lbsmd_stub.o ncbi_ansi_ext.o ncbi_types.o ncbi_core.o ncbi_priv.o ncbi_util.o ncbi_buffer.o ncbi_socket.o ncbi_connector.o ncbi_connection.o ncbi_connutil.o ncbi_ipv6.o ncbi_server_info.o ncbi_host_info.o ncbi_service.o ncbi_sendmail.o ncbi_base64.o ncbi_heapmgr.o ncbi_lb.o ncbi_socket_connector.o ncbi_file_connector.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_service_connector.o ncbi_ftp_connector.o ncbi_version.o ncbi_iprange.o ncbi_local.o ncbi_dispd.o ncbi_lbos.o ncbi_linkerd.o ncbi_namerd.o parson.o ncbi_localip.o ncbi_socket_cxx.o ncbi_core_cxx.o email_diag_handler.o ncbi_conn_streambuf.o ncbi_conn_stream.o ncbi_conn_test.o ncbi_misc.o ncbi_namedpipe.o ncbi_namedpipe_connector.o ncbi_pipe.o ncbi_pipe_connector.o ncbi_conn_reader_writer.o ncbi_userhost.o ncbi_http_session.o ncbi_lbos_cxx.o ncbi_monkey.o ncbi_service_cxx.o ncbi_localip_cxx.o ncbi_blowfish.o ncbi_usage_report.o connect_misc.o ncbi_gnutls.o ncbi_mbedtls.o ncbi_tls.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxncbi -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread /bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnect.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib @@ -16732,28 +16698,28 @@ /bin/ln -f .xconnect.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xconnect.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -cd algo/blast/core/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blast UNIX_PROJ="" sources= configurables=configurables.null -cd connect/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xthrserv UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/core/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blast UNIX_PROJ="" sources= configurables=configurables.null +cd connect/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xthrserv UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/core' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/core' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/core' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect TMPL=xthrserv -w -j11 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/core' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/core' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core TMPL=blast -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect TMPL=xthrserv -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core TMPL=blast -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/core' /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/aa_ungapped.c -o aa_ungapped.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_diagnostics.c -o blast_diagnostics.o @@ -16761,58 +16727,31 @@ /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_extend.c -o blast_extend.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_filter.c -o blast_filter.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_gapalign.c -o blast_gapalign.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -W/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/aa_ungapped.c: In function 's_BlastAaWordFinder_TwoHit': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/aa_ungapped.c:484:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] - 484 | scansub = (TAaScanSubjectFunction)(lookup->scansub_callback); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/aa_ungapped.c:491:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] - 491 | scansub = (TAaScanSubjectFunction)(lookup->scansub_callback); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/aa_ungapped.c: In function 's_BlastAaWordFinder_OneHit': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/aa_ungapped.c:751:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] - 751 | scansub = (TAaScanSubjectFunction)(lookup->scansub_callback); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/aa_ungapped.c:758:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] - 758 | scansub = (TAaScanSubjectFunction)(lookup->scansub_callback); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_engine.c: In function 'BLAST_PreliminarySearchEngine': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_engine.c:1366:9: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] - 1366 | (T_MB_IdbCheckOid)lookup_wrap->check_index_oid; - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_engine.c:1504:22: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] - 1504 | ((T_MB_IdxEndSearchIndication)( - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_engine.c:1591:10: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] - 1591 | ((T_MB_IdxEndSearchIndication)( - | ^ -all -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_hits.c -o blast_hits.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_hits.c -o blast_hits.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_hspstream.c -o blast_hspstream.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_itree.c -o blast_itree.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_kappa.c -o blast_kappa.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_lookup.c -o blast_lookup.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_aalookup.c -o blast_aalookup.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_aascan.c: In function 'BlastChooseProteinScanSubject': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_aascan.c:567:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] - 567 | lut->scansub_callback = (void *)s_BlastAaScanSubject; - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_aascan.c:570:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] - 570 | lut->scansub_callback = (void *)s_BlastSmallAaScanSubject; - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_aascan.c:575:33: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] - 575 | lut->scansub_callback = (void *)s_BlastCompressedAaScanSubject; - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nalookup.c: In function 'BlastNaHashLookupTableNew': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nalookup.c:2236:27: warning: ISO C forbids assignment between function pointer and 'void *' [-Wpedantic] - 2236 | lookup->hash_callback = FNV_hash; - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nalookup.c:2296:49: warning: ISO C forbids passing argument 8 of 'BlastHashLookupIndexQueryExactMatches' between function pointer and 'void *' [-Wpedantic] - 2296 | lookup->hash_callback, - | ~~~~~~^~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/core/blast_nalookup.h:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nalookup.c:31: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/core/blast_lookup.h:181:66: note: expected 'TNaLookupHashFunction' {aka 'unsigned int (*)(unsigned char *, unsigned int)'} but argument is of type 'void *' - 181 | TNaLookupHashFunction hash_func, - | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_aascan.c -o blast_aascan.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nalookup.c -o blast_nalookup.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c -o blast_nascan.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_message.c -o blast_message.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_options.c -o blast_options.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_psi.c -o blast_psi.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -DIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/classinfob.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/classinfob.cpp:33: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c: In function 's_NaChooseScanSubject': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:291:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] 291 | lookup->scansub_callback = (void *)s_BlastNaScanSubject_8_4; @@ -16820,12 +16759,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:293:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] 293 | lookup->scansub_callback = (void *)s_BlastNaScanSubject_Any; | ^ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=gene_info_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/gene_info_reader/unit_test/gene_info_test.cpp -o gene_info_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie gene_info_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lgene_info -lxncbi -lm -lpthread -o gene_info_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f gene_info_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f gene_info_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/gene_info_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/aa_ungapped.c: In function 's_BlastAaWordFinder_TwoHit': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/aa_ungapped.c:484:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] + 484 | scansub = (TAaScanSubjectFunction)(lookup->scansub_callback); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/aa_ungapped.c:491:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] + 491 | scansub = (TAaScanSubjectFunction)(lookup->scansub_callback); + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c: In function 's_SmallNaChooseScanSubject': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:1320:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] 1320 | lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_4_1; @@ -16833,6 +16773,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:1322:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] 1322 | lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_Any; | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/aa_ungapped.c: In function 's_BlastAaWordFinder_OneHit': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/aa_ungapped.c:751:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] + 751 | scansub = (TAaScanSubjectFunction)(lookup->scansub_callback); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/aa_ungapped.c:758:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] + 758 | scansub = (TAaScanSubjectFunction)(lookup->scansub_callback); + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:1327:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] 1327 | lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_5_1; | ^ @@ -16848,12 +16795,22 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:1338:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] 1338 | lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_Any; | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_aascan.c: In function 'BlastChooseProteinScanSubject': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:1343:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] 1343 | lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_7_1; | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_aascan.c:567:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] + 567 | lut->scansub_callback = (void *)s_BlastAaScanSubject; + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_aascan.c:570:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] + 570 | lut->scansub_callback = (void *)s_BlastSmallAaScanSubject; + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:1345:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] 1345 | lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_7_2; | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_aascan.c:575:33: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] + 575 | lut->scansub_callback = (void *)s_BlastCompressedAaScanSubject; + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:1347:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] 1347 | lookup->scansub_callback = (void *)s_BlastSmallNaScanSubject_7_3; | ^ @@ -16866,7 +16823,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:1360:33: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] 1360 | (void *)s_BlastSmallNaScanSubject_Any; | ^ -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:1364:33: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] 1364 | (void *)s_BlastSmallNaScanSubject_8_1Mod4; | ^ @@ -16876,82 +16832,18 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:1372:33: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] 1372 | (void *)s_BlastSmallNaScanSubject_8_3Mod4; | ^ --protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_aascan.c -o blast_aascan.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nalookup.c -o blast_nalookup.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c -o blast_nascan.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_message.c -o blast_message.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_options.c -o blast_options.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_psi.c -o blast_psi.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c: In function 's_MBChooseScanSubject': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:2620:24: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] - 2620 | (void *)s_MB_DiscWordScanSubject_TwoTemplates_1; - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:2622:39: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] - 2622 | mb_lt->scansub_callback = (void *)s_MB_DiscWordScanSubject_11_18_1; - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:2624:39: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] - 2624 | mb_lt->scansub_callback = (void *)s_MB_DiscWordScanSubject_11_21_1; - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:2626:39: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] - 2626 | mb_lt->scansub_callback = (void *)s_MB_DiscWordScanSubject_1; - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:2634:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] - 2634 | mb_lt->scansub_callback = (void *)s_MBScanSubject_9_1; - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:2636:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] - 2636 | mb_lt->scansub_callback = (void *)s_MBScanSubject_9_2; - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:2638:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] - 2638 | mb_lt->scansub_callback = (void *)s_MBScanSubject_Any; - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:2643:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] - 2643 | mb_lt->scansub_callback = (void *)s_MBScanSubject_10_1; - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:2645:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] - 2645 | mb_lt->scansub_callback = (void *)s_MBScanSubject_10_2; - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:2647:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] - 2647 | mb_lt->scansub_callback = (void *)s_MBScanSubject_10_3; - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:2649:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] - 2649 | mb_lt->scansub_callback = (void *)s_MBScanSubject_Any; - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:2655:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] - 2655 | mb_lt->scansub_callback = (void *)s_MBScanSubject_Any; - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:2658:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] - 2658 | mb_lt->scansub_callback = (void *)s_MBScanSubject_11_1Mod4; - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:2661:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] - 2661 | mb_lt->scansub_callback = (void *)s_MBScanSubject_11_2Mod4; - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:2664:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] - 2664 | mb_lt->scansub_callback = (void *)s_MBScanSubject_11_3Mod4; - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:2676:39: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] - 2676 | mb_lt->scansub_callback = (void *)s_MBScanSubject_Any; - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c: In function 's_BlastNaHashLookupRetieveHits': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:2705:9: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] - 2705 | (TNaLookupHashFunction)lookup->hash_callback; - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c: In function 's_NaHashChooseScanSubject': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:2978:32: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] - 2978 | lookup->scansub_callback = (void*)s_BlastNaHashScanSubject_Any; - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c: In function 'BlastChooseNucleotideScanSubjectAny': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:2997:16: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] - 2997 | return (void *)s_BlastNaScanSubject_Any; - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:3000:16: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] - 3000 | return (void *)s_BlastSmallNaScanSubject_Any; - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:3003:16: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] - 3003 | return (void*)s_BlastNaHashScanSubject_Any; - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:3006:12: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] - 3006 | return (void *)s_MBScanSubject_Any; - | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nalookup.c: In function 'BlastNaHashLookupTableNew': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nalookup.c:2236:27: warning: ISO C forbids assignment between function pointer and 'void *' [-Wpedantic] + 2236 | lookup->hash_callback = FNV_hash; + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nalookup.c:2296:49: warning: ISO C forbids passing argument 8 of 'BlastHashLookupIndexQueryExactMatches' between function pointer and 'void *' [-Wpedantic] + 2296 | lookup->hash_callback, + | ~~~~~~^~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/core/blast_nalookup.h:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nalookup.c:31: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/core/blast_lookup.h:181:66: note: expected 'TNaLookupHashFunction' {aka 'unsigned int (*)(unsigned char *, unsigned int)'} but argument is of type 'void *' + 181 | TNaLookupHashFunction hash_func, + | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/na_ungapped.c: In function 's_IsSeedMasked': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/na_ungapped.c:488:15: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 488 | return !(((T_Lookup_Callback)(lookup_wrap->lookup_callback)) @@ -16969,35 +16861,79 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/na_ungapped.c:1636:18: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 1636 | extend = (TNaExtendFunction)lookup->extend_callback; | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c: In function 's_MBChooseScanSubject': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:2620:24: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] + 2620 | (void *)s_MB_DiscWordScanSubject_TwoTemplates_1; + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:2622:39: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] + 2622 | mb_lt->scansub_callback = (void *)s_MB_DiscWordScanSubject_11_18_1; + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/na_ungapped.c:1643:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 1643 | scansub = (TNaScanSubjectFunction)lookup->scansub_callback; | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/na_ungapped.c:1644:18: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 1644 | extend = (TNaExtendFunction)lookup->extend_callback; | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:2624:39: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] + 2624 | mb_lt->scansub_callback = (void *)s_MB_DiscWordScanSubject_11_21_1; + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_engine.c: In function 'BLAST_PreliminarySearchEngine': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_engine.c:1366:9: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] + 1366 | (T_MB_IdbCheckOid)lookup_wrap->check_index_oid; + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/na_ungapped.c:1657:23: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 1657 | scansub = (TNaScanSubjectFunction) | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:2626:39: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] + 2626 | mb_lt->scansub_callback = (void *)s_MB_DiscWordScanSubject_1; + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/na_ungapped.c: In function 'MB_IndexedWordFinder': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/na_ungapped.c:1723:9: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 1723 | (T_MB_IdbCheckOid)lookup_wrap->check_index_oid; | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:2634:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] + 2634 | mb_lt->scansub_callback = (void *)s_MBScanSubject_9_1; + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/na_ungapped.c:1725:25: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 1725 | (T_MB_IdbGetResults)lookup_wrap->read_indexed_db; | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:2636:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] + 2636 | mb_lt->scansub_callback = (void *)s_MBScanSubject_9_2; + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/na_ungapped.c: In function 'BlastChooseNaExtend': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:2638:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] + 2638 | mb_lt->scansub_callback = (void *)s_MBScanSubject_Any; + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_engine.c:1504:22: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] + 1504 | ((T_MB_IdxEndSearchIndication)( + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:2643:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] + 2643 | mb_lt->scansub_callback = (void *)s_MBScanSubject_10_1; + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_engine.c:1591:10: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] + 1591 | ((T_MB_IdxEndSearchIndication)( + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/na_ungapped.c:1795:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] 1795 | lookup_wrap->lookup_callback = (void *)s_MBLookup; | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:2645:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] + 2645 | mb_lt->scansub_callback = (void *)s_MBScanSubject_10_2; + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/na_ungapped.c:1799:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] 1799 | lut->extend_callback = (void *)s_BlastNaExtendDirect; | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/na_ungapped.c:1802:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] 1802 | lut->extend_callback = (void *)s_BlastNaExtendAligned; | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:2647:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] + 2647 | mb_lt->scansub_callback = (void *)s_MBScanSubject_10_3; + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/na_ungapped.c:1804:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] 1804 | lut->extend_callback = (void *)s_BlastNaExtend; | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:2649:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] + 2649 | mb_lt->scansub_callback = (void *)s_MBScanSubject_Any; + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/na_ungapped.c:1808:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] 1808 | lookup_wrap->lookup_callback = (void *)s_SmallNaLookup; | ^ @@ -17007,34 +16943,70 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/na_ungapped.c:1816:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] 1816 | lut->extend_callback = (void *)s_BlastSmallNaExtendAlignedOneByte; | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:2655:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] + 2655 | mb_lt->scansub_callback = (void *)s_MBScanSubject_Any; + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:2658:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] + 2658 | mb_lt->scansub_callback = (void *)s_MBScanSubject_11_1Mod4; + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:2661:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] + 2661 | mb_lt->scansub_callback = (void *)s_MBScanSubject_11_2Mod4; + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/na_ungapped.c:1818:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] 1818 | lut->extend_callback = (void *)s_BlastSmallNaExtend; | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:2664:43: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] + 2664 | mb_lt->scansub_callback = (void *)s_MBScanSubject_11_3Mod4; + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/na_ungapped.c:1825:40: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] 1825 | lookup_wrap->lookup_callback = (void *)s_NaLookup; | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:2676:39: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] + 2676 | mb_lt->scansub_callback = (void *)s_MBScanSubject_Any; + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/na_ungapped.c:1829:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] 1829 | lut->extend_callback = (void *)s_BlastNaExtendDirect; | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c: In function 's_BlastNaHashLookupRetieveHits': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:2705:9: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] + 2705 | (TNaLookupHashFunction)lookup->hash_callback; + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/na_ungapped.c:1832:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] 1832 | lut->extend_callback = (void *)s_BlastNaExtendAligned; | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c: In function 's_NaHashChooseScanSubject': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/na_ungapped.c:1834:36: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] 1834 | lut->extend_callback = (void *)s_BlastNaExtend; | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:2978:32: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] + 2978 | lookup->scansub_callback = (void*)s_BlastNaHashScanSubject_Any; + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/na_ungapped.c: In function 'JumperNaWordFinder': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c: In function 'BlastChooseNucleotideScanSubjectAny': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/na_ungapped.c:1974:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 1974 | scansub = (TNaScanSubjectFunction)lookup->scansub_callback; | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:2997:16: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] + 2997 | return (void *)s_BlastNaScanSubject_Any; + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/na_ungapped.c:1986:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 1986 | scansub = (TNaScanSubjectFunction)lookup->scansub_callback; | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/na_ungapped.c:1994:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 1994 | scansub = (TNaScanSubjectFunction)lookup->scansub_callback; | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:3000:16: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] + 3000 | return (void *)s_BlastSmallNaScanSubject_Any; + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/na_ungapped.c:2001:19: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 2001 | scansub = (TNaScanSubjectFunction)lookup->scansub_callback; | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:3003:16: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] + 3003 | return (void*)s_BlastNaHashScanSubject_Any; + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_nascan.c:3006:12: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] + 3006 | return (void *)s_MBScanSubject_Any; + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/na_ungapped.c:2014:23: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] 2014 | scansub = (TNaScanSubjectFunction) | ^ @@ -17058,21 +17030,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_util.c:309:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 309 | return 0; | ^~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/server_monitor.cpp: In member function 'void ncbi::CServer_Monitor::SetSocket(ncbi::CSocket&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/server_monitor.cpp:56:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 56 | auto_ptr s(new CSocket()); - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbithr_conf.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimtx.hpp:62, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/server_monitor.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/server_monitor.cpp:33: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_traceback.c -o blast_traceback.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_util.c -o blast_util.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/gapinfo.c -o gapinfo.o @@ -17087,26 +17044,98 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/link_hsps.c:136:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 136 | if (h1->query.offset < h2->query.offset) | ^~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/threaded_server.cpp:47:54: warning: 'CThreadedServer' is deprecated [-Wdeprecated-declarations] - 47 | CSocketRequest(CThreadedServer& server, SOCK sock) // NCBI_FAKE_WARNING - | ^ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/threaded_server.cpp:33: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/threaded_server.hpp:77:44: note: declared here - 77 | NCBI_DEPRECATED_CLASS NCBI_XCONNECT_EXPORT CThreadedServer - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/threaded_server.cpp:52:22: warning: 'CThreadedServer' is deprecated [-Wdeprecated-declarations] - 52 | CThreadedServer& m_Server; // NCBI_FAKE_WARNING - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/threaded_server.hpp:77:44: note: declared here - 77 | NCBI_DEPRECATED_CLASS NCBI_XCONNECT_EXPORT CThreadedServer - | ^~~~~~~~~~~~~~~ nline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/link_hsps.c -o link_hsps.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/lookup_util.c -o lookup_util.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/lookup_wrap.c -o lookup_wrap.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/matrix_freq_ratios.c -o matrix_freq_ratios.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/ncbi_std.c -o ncbi_std.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/ncbi_math.c -o ncbi_math.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-prIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/connection_pool.hpp:37, +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-pr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objistrxml.cpp -o objistrxml.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objostrjson.cpp -o objostrjson.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objistrjson.cpp -o objistrjson.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/serializable.cpp -o serializable.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/serialobject.cpp -o serialobject.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/pathhook.cpp -o pathhook.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/buiotector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_encoding.c -o blast_encoding.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/pattern.c -o pattern.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/phi_extend.c -o phi_extend.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/phi_gapalign.c -o phi_gapalign.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/phi_lookup.c -o phi_lookup.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_parameters.c -o blast_parameters.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/typeinfo.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbitime.hpp:65, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/interprocess_lock.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_process.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbithr.hpp:46, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/typeinfo.cpp:35: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +URCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_posit.c -o blast_posit.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_program.c -o blast_program.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_query_info.c -o blast_query_info.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_tune.c -o blast_tune.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_sw.c -o blast_sw.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_dynarray.c -o blast_dynarray.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/typeref.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialdef.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/typeref.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/typeref.cpp:33: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/phi_lookup.c: In function 'SPHIPatternSearchBlkNew': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/phi_lookup.c:634:30: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] + 634 | localPattern[posIndex-1] = 1; + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/phi_lookup.c:411:11: note: at offset [-2147483648, -1] into destination object 'localPattern' of size 330 + 411 | Uint1 localPattern[PHI_MAX_PATTERN_LENGTH]; /*local variable to hold for each position whether + | ^~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/phi_lookup.c:634:30: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] + 634 | localPattern[posIndex-1] = 1; + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/phi_lookup.c:411:11: note: at offset -1 into destination object 'localPattern' of size 330 + 411 | Uint1 localPattern[PHI_MAX_PATTERN_LENGTH]; /*local variable to hold for each position whether + | ^~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/split_query.c -o split_query.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/gencode_singleton.c -o gencode_singleton.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/index_ungapped.c -o index_ungapped.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_traceback_mt_priv.c -o blast_traceback_mt_priv.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_hspstream_mt_utils.c -o blast_hspstream_mt_utils.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/boost_erf.c -o boost_erf.o +/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/jumper.c -o jumper.o +/usr/bin/gcc -std=gn/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/server_monitor.cpp: In member function 'void ncbi::CServer_Monitor::SetSocket(ncbi::CSocket&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/server_monitor.cpp:56:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 56 | auto_ptr s(new CSocket()); + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbithr_conf.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimtx.hpp:62, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/server_monitor.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/server_monitor.cpp:33: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/connection_pool.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/server.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/impl/server_connection.hpp:113:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 113 | auto_ptr m_Handler; @@ -17130,13 +17159,6 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/server.cpp: In constructor 'ncbi::CAcceptRequest::CAcceptRequest(ncbi::EServIO_Event, ncbi::CServer_ConnectionPool&, const STimeout*, ncbi::CServer_Listener*)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/server.cpp:389:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 389 | auto_ptr conn( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/connection_pool.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/connection_pool.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/impl/server_connection.hpp:113:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] @@ -17158,45 +17180,35 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -otector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_encoding.c -o blast_encoding.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/pattern.c -o pattern.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/phi_extend.c -o phi_extend.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/phi_gapalign.c -o phi_gapalign.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/phi_lookup.c -o phi_lookup.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_parameters.c -o blast_parameters.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SO/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/phi_lookup.c: In function 'SPHIPatternSearchBlkNew': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/phi_lookup.c:634:30: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] - 634 | localPattern[posIndex-1] = 1; - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/phi_lookup.c:411:11: note: at offset [-2147483648, -1] into destination object 'localPattern' of size 330 - 411 | Uint1 localPattern[PHI_MAX_PATTERN_LENGTH]; /*local variable to hold for each position whether - | ^~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/phi_lookup.c:634:30: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] - 634 | localPattern[posIndex-1] = 1; - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/phi_lookup.c:411:11: note: at offset -1 into destination object 'localPattern' of size 330 - 411 | Uint1 localPattern[PHI_MAX_PATTERN_LENGTH]; /*local variable to hold for each position whether - | ^~~~~~~~~~~~ -URCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_posit.c -o blast_posit.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_program.c -o blast_program.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_query_info.c -o blast_query_info.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_tune.c -o blast_tune.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_sw.c -o blast_sw.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_dynarray.c -o blast_dynarray.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/split_query.c -o split_query.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/gencode_singleton.c -o gencode_singleton.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/index_ungapped.c -o index_ungapped.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_traceback_mt_priv.c -o blast_traceback_mt_priv.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/blast_hspstream_mt_utils.c -o blast_hspstream_mt_utils.o -/usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread 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-I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/jumper.c -o jumper.o -/usr/bin/gcc -std=gn/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objistrxml.cpp -o objistrxml.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objostrjson.cpp -o objostrjson.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/objistrjson.cpp -o objistrjson.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/serializable.cpp -o serializable.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/serialobject.cpp -o serialobject.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/pathhook.cpp -o pathhook.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/buiu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/hspfilter_mapper.c -o hspfilter_mapper.o +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/server.cpp: In constructor 'ncbi::CAcceptRequest::CAcceptRequest(ncbi::EServIO_Event, ncbi::CServer_ConnectionPool&, const STimeout*, ncbi::CServer_Listener*)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/server.cpp:389:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 389 | auto_ptr conn( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/threaded_server.cpp:47:54: warning: 'CThreadedServer' is deprecated [-Wdeprecated-declarations] + 47 | CSocketRequest(CThreadedServer& server, SOCK sock) // NCBI_FAKE_WARNING + | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/threaded_server.cpp:33: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/threaded_server.hpp:77:44: note: declared here + 77 | NCBI_DEPRECATED_CLASS NCBI_XCONNECT_EXPORT CThreadedServer + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/threaded_server.cpp:52:22: warning: 'CThreadedServer' is deprecated [-Wdeprecated-declarations] + 52 | CThreadedServer& m_Server; // NCBI_FAKE_WARNING + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/threaded_server.hpp:77:44: note: declared here + 77 | NCBI_DEPRECATED_CLASS NCBI_XCONNECT_EXPORT CThreadedServer + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/stdtypes.cpp: In static member function 'static void ncbi::CPrimitiveTypeFunctions::Skip(ncbi::CObjectIStream&, ncbi::TTypeInfo) [with T = long double]': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/stdtypes.cpp:147:23: warning: 'data' may be used uninitialized [-Wmaybe-uninitialized] + 147 | in.SkipStd(data); + | ~~~~~~~~~~^~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/stdtypes.cpp:147:23: note: by argument 2 of type 'const long double&' to 'void (ncbi::CObjectIStream::)(const long double&)' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/stdtypes.cpp:146:25: note: 'data' declared here + 146 | TObjectType data; + | ^~~~ +u11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/hspfilter_mapper.c -o hspfilter_mapper.o /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/core/spliced_hits.c -o spliced_hits.o /bin/rm -f libblast.so .libblast.so.stamp /usr/bin/g++ -std=gnu++14 -shared -o libblast.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o blast_filter.o blast_gapalign.o blast_hits.o blast_hspstream.o blast_itree.o blast_kappa.o blast_lookup.o blast_aalookup.o blast_aascan.o blast_nalookup.o blast_nascan.o blast_message.o blast_options.o blast_psi.o na_ungapped.o blast_psi_priv.o blast_seg.o blast_seqsrc.o blast_setup.o blast_stat.o blast_traceback.o blast_util.o gapinfo.o greedy_align.o hspfilter_collector.o hspfilter_besthit.o hspfilter_culling.o link_hsps.o lookup_util.o lookup_wrap.o matrix_freq_ratios.o ncbi_std.o ncbi_math.o blast_encoding.o pattern.o phi_extend.o phi_gapalign.o phi_lookup.o blast_parameters.o blast_posit.o blast_program.o blast_query_info.o blast_tune.o blast_sw.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o blast_traceback_mt_priv.o blast_hspstream_mt_utils.o boost_erf.o jumper.o hspfilter_mapper.o spliced_hits.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lcomposition_adjustment -lxconnect -ltables -lm -lpthread @@ -17205,19 +17217,6 @@ /bin/ln -f .blast.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.blast.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/core' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/core' -y -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/compress/api/lzo.cpp -o lzo.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/compress/api/reader_zlib.cpp -o reader_zlib.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/compress/api/tar.cpp -o tar.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/compress/api/archive.cpp -o archive.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/compress/api/archive_.cpp -o archive_.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/compress/api/archive_zip.cpp -o archive_zip.o -/bin/rm -f libxcompress.so .libxcompress.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libxcompress.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC compress.o stream.o streambuf.o stream_util.o bzip2.o zlib.o lzo.o reader_zlib.o tar.o archive.o archive_.o archive_zip.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxutil -lxncbi -lbz2 -lz -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcompress.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libxcompress.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxcompress.so -/bin/ln -f .xcompress.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xcompress.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/threaded_server.cpp -o threaded_server.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/server.cpp -o server.o @@ -17230,17 +17229,17 @@ /bin/ln -f .xthrserv.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xthrserv.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -cd connect/services/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xconnserv UNIX_PROJ="" sources= configurables=configurables.null +cd connect/services/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xconnserv UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services TMPL=xconnserv -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services TMPL=xconnserv -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/grid_worker.cpp -o grid_worker.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/ns_client_factory.cpp -o ns_client_factory.o @@ -17248,13 +17247,49 @@ /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/grid_client.cpp -o grid_client.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/grid_client_app.cpp -o grid_client_app.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/wn_commit_thread.cpp -o wn_commit_thread.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.speIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/wn_main_loop.cpp -o wn_main_loop.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/wn_cleanup.cpp -o wn_cleanup.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/wn_offline_mode.cpp -o wn_offline_mode.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/grid_control_thread.cpp -o grid_control_thread.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/grid_globals.cpp -o grid_globals.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/grid_rw_impl.cpp -o grid_rw_impl.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/remote_app.cpp -o remote_app.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/srv_connections.cpp -o srv_connections.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netservice_api.cpp -o netservice_api.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netservice_params.cpp -o netservice_params.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netschedule_api.cpp -o netschedule_api.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netschedule_api_submitter.cpp -o netschedule_api_submitter.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netschedule_api_executor.cpp -o netschedule_api_executor.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducibIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/services/grid_worker_app.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/wn_cleanup.hpp:35, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/wn_main_loop.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/services/grid_worker_app.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/wn_cleanup.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/grid_worker_impl.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/grid_worker.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -17273,6 +17308,27 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -17321,6 +17377,42 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ @@ -17342,9 +17434,42 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -17363,6 +17488,27 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/services/grid_worker_app.hpp:89:75: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 89 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/services/grid_worker_app.hpp:89:75: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 89 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/services/grid_worker_app.hpp:89:51: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 89 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/services/grid_worker_app.hpp:93:75: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 93 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -17396,6 +17542,21 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/services/grid_worker_app.hpp:93:51: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 93 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/services/grid_worker_app.hpp:93:51: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 93 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/services/grid_client_app.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/grid_client_app.cpp:35: @@ -17511,7 +17672,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/services/grid_worker_app.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/wn_cleanup.hpp:35, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/grid_worker_impl.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/grid_worker.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/grid_control_thread.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -17659,7 +17820,8 @@ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/services/grid_worker_app.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/wn_cleanup.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/wn_cleanup.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/grid_worker_impl.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/wn_commit_thread.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -17955,8 +18117,7 @@ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/services/grid_worker_app.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/wn_cleanup.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/grid_worker_impl.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/grid_worker_app.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/wn_cleanup.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -18105,7 +18266,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/services/grid_worker_app.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/wn_cleanup.hpp:35, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/grid_worker_impl.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/wn_commit_thread.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/grid_worker_app.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -18250,11 +18411,23 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/services/grid_worker_app.hpp:93:51: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 93 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +-D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/html/components.cpp -o components.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/html/commentdiag.cpp -o commentdiag.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/html/indentstream.cpp -o indentstream.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/html/html_exception.cpp -o html_exception.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/html/writer_htmlenc.cpp -o writer_htmlenc.o +/bin/rm -f libxhtml.so .libxhtml.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libxhtml.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC node.o html.o htmlhelper.o page.o pager.o selection.o components.o commentdiag.o indentstream.o html_exception.o writer_htmlenc.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxhtml.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libxhtml.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxhtml.so +/bin/ln -f .xhtml.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xhtml.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/html' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/html' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/services/grid_worker_app.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/wn_cleanup.hpp:35, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/grid_worker_impl.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/grid_control_thread.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netschedule_api_getjob.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -18399,6 +18572,37 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/services/grid_worker_app.hpp:93:51: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 93 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +le-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netschedule_api_reader.cpp -o netschedule_api_reader.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netschedule_api_admin.cpp -o netschedule_api_admin.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netschedule_api_getjob.cpp -o netschedule_api_getjob.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netschedule_key.cpp -o netschedule_key.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netschedule_api_expt.cpp -o netschedule_api_expt.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netcache_key.cpp -o netcache_key.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netcache_rw.cpp -o netcache_rw.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netcache_params.cpp -o netcache_params.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netcache_api.cpp -o netcache_api.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netcache_api_admin.cpp -o netcache_api_admin.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netcache_search.cpp -o netcache_search.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netservice_protocol_parser.cpp -o netservice_protocol_parser.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/util.cpp -o util.o +/usr/bin/g++ specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/cgi/user_agent.cpp -o user_agent.o +/bin/rm -f libxcgi.so .libxcgi.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libxcgi.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC ncbicgi.o cgiapp.o cgictx.o ncbicgir.o ncbires.o ref_args.o cgi_run.o cgi_util.o cgi_serial.o cgi_session.o cgi_exception.o cgiapp_cached.o cgi_entry_reader.o user_agent.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxutil -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcgi.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libxcgi.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxcgi.so +/bin/ln -f .xcgi.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xcgi.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' +-std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/clparser.cpp -o clparser.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/json_over_uttp.cpp -o json_over_uttp.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netstorage.cpp -o netstorage.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netstorage_rpc.cpp -o netstorage_rpc.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netstorageobjectloc.cpp -o netstorageobjectloc.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netstorageobjectinfo.cpp -o netstorageobjectinfo.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netstorage_rpc.cpp: In constructor 'ncbi::CSendJsonOverSocket::CSendJsonOverSocket(ncbi::CSocket&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netstorage_rpc.cpp:115:55: warning: member 'ncbi::CSendJsonOverSocket::m_UTTPWriter' is used uninitialized [-Wuninitialized] + 115 | CSendJsonOverSocket(CSocket& sock) : m_JSONWriter(m_UTTPWriter), m_Socket(sock) {} + | ^~~~~~~~~~~~ ld/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/rpcbase.cpp -o rpcbase.o /bin/rm -f libxser.so .libxser.so.stamp /usr/bin/g++ -std=gnu++14 -shared -o libxser.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC hookdata.o hookdatakey.o typeinfo.o objectinfo.o objectiter.o objectio.o typeref.o typemap.o stdtypes.o enumerated.o ptrinfo.o autoptrinfo.o continfo.o stltypes.o memberid.o memberlist.o item.o classinfob.o member.o classinfo.o variant.o choice.o choiceptr.o aliasinfo.o objistr.o objostr.o objcopy.o iterator.o serial.o delaybuf.o pack_string.o exception.o objhook.o objlist.o objstack.o objostrasn.o objistrasn.o objostrasnb.o objistrasnb.o objostrxml.o objistrxml.o objostrjson.o objistrjson.o serializable.o serialobject.o pathhook.o rpcbase.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxutil -lxncbi -lm -lpthread @@ -18407,17 +18611,17 @@ /bin/ln -f .xser.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xser.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' -cd serial/datatool/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=datatool LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd serial/datatool/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=datatool LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial/datatool' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial/datatool' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial/datatool' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial/datatool' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial/datatool' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool TMPL=datatool -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool TMPL=datatool -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial/datatool' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/datatool.cpp -o datatool.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/type.cpp -o type.o @@ -18425,13 +18629,19 @@ /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/statictype.cpp -o statictype.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/enumtype.cpp -o enumtype.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/reftype.cpp -o reftype.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/cs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/wn_main_loop.cpp -o wn_main_loop.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG 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-std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/grid_control_thread.cpp -o grid_control_thread.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/grid_globals.cpp -o grid_globals.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/grid_rw_impl.cpp -o grid_rw_impl.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-bIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc 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-specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/choicetype.cpp -o choicetype.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/typestr.cpp -o typestr.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/ptrstr.cpp -o ptrstr.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/stdstr.cpp -o stdstr.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/classstr.cpp -o classstr.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/enumstr.cpp -o enumstr.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/stlstr.cpp -o stlstr.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/choicestr.cpp -o choicestr.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/choiceptrstr.cpp -o choiceptrstr.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/value.cpp -o value.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/datatool.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/type.cpp:49: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -18544,124 +18754,7 @@ | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/datatool.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/datatool.cpp:59: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/unitype.cpp -o unitype.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/blocktype.cpp -o blocktype.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/choicetype.cpp -o choicetype.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/typestr.cpp -o typestr.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/ptrstr.cpp -o ptrstr.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/stdstr.cpp -o stdstr.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/datatool.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/classstr.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/choicestr.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -18770,56 +18863,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/reftype.cpp:43: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/type.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/reftype.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/reftype.cpp:33: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/unitype.cpp:33: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:35: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -last+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/remote_app.cpp -o remote_app.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/srv_connections.cpp -o srv_connections.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netservice_api.cpp -o netservice_api.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netservice_params.cpp -o netservice_params.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netschedule_api.cpp -o netschedule_api.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netschedule_api_submitter.cpp -o netschedule_api_submitter.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netschedule_api_executor.cpp -o netschedule_api_executor.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducibIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/statictype.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/exceptions.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/statictype.cpp:33: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/datatool.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/choicestr.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/choiceptrstr.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -18930,7 +18976,7 @@ | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/datatool.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/choiceptrstr.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/classstr.cpp:33: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -19040,10 +19086,7 @@ 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/services/grid_worker_app.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/wn_cleanup.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/grid_worker_impl.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netschedule_api_getjob.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/moduleset.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -19152,50 +19195,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/services/grid_worker_app.hpp:89:75: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 89 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/services/grid_worker_app.hpp:89:51: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 89 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/services/grid_worker_app.hpp:93:75: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 93 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/connect/services/grid_worker_app.hpp:93:51: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 93 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -E64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/classstr.cpp -o classstr.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/enumstr.cpp -o enumstr.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/stlstr.cpp -o stlstr.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/choicestr.cpp -o choicestr.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/choiceptrstr.cpp -o choiceptrstr.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/value.cpp -o value.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/moduleset.cpp:34: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/datatool.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/datatool.cpp:59: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -19304,6 +19306,19 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +y -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/compress/api/lzo.cpp -o lzo.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/compress/api/reader_zlib.cpp -o reader_zlib.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/compress/api/tar.cpp -o tar.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/compress/api/archive.cpp -o archive.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/compress/api/archive_.cpp -o archive_.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/compress/api/archive_zip.cpp -o archive_zip.o +/bin/rm -f libxcompress.so .libxcompress.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libxcompress.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC compress.o stream.o streambuf.o stream_util.o bzip2.o zlib.o lzo.o reader_zlib.o tar.o archive.o archive_.o archive_zip.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxutil -lxncbi -lbz2 -lz -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcompress.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libxcompress.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxcompress.so +/bin/ln -f .xcompress.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xcompress.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/api' APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/mcontainer.cpp -o mcontainer.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/module.cpp -o module.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/moduleset.cpp -o moduleset.o @@ -19311,26 +19326,59 @@ /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/filecode.cpp -o filecode.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/code.cpp -o code.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/fileutil.cpp -o fileutil.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-mle-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netschedule_api_reader.cpp -o netschedule_api_reader.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netschedule_api_admin.cpp -o netschedule_api_admin.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netschedule_api_getjob.cpp -o netschedule_api_getjob.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netschedule_key.cpp -o netschedule_key.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netschedule_api_expt.cpp -o netschedule_api_expt.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netcache_key.cpp -o netcache_key.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netcache_rw.cpp -o netcache_rw.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netcache_params.cpp -o netcache_params.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netcache_api.cpp -o netcache_api.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netcache_api_admin.cpp -o netcache_api_admin.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netcache_search.cpp -o netcache_search.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netservice_protocol_parser.cpp -o netservice_protocol_parser.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/util.cpp -o util.o -/usr/bin/g++ ap=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/alexer.cpp -o alexer.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-mIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/unitype.cpp:33: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:35: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/reftype.cpp:43: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/type.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/reftype.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/reftype.cpp:33: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/statictype.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/exceptions.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/statictype.cpp:33: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +ap=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/alexer.cpp -o alexer.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/aparser.cpp -o aparser.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/parser.cpp -o parser.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/lexer.cpp -o lexer.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/exceptions.cpp -o exceptions.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/comments.cpp -o comments.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/srcutil.cpp -o srcutil.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/dtdaux.cpp -o dtdaux.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/dtdlexer.cpp -o dtdlexer.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/dtdparser.cpp -o dtdparser.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/rpcgen.cpp -o rpcgen.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/aliasstr.cpp -o aliasstr.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/datatool.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/aliasstr.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -19441,13 +19489,7 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -EFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/srcutil.cpp -o srcutil.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/dtdaux.cpp -o dtdaux.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/dtdlexer.cpp -o dtdlexer.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/dtdparser.cpp -o dtdparser.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/rpcgen.cpp -o rpcgen.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/aliasstr.cpp -o aliasstr.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/datatool.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/xsdparser.cpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -19558,7 +19600,14 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, +LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netstorage_direct_nc.cpp -o netstorage_direct_nc.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/ns_output_parser.cpp -o ns_output_parser.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/ns_job_serializer.cpp -o ns_job_serializer.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/compound_id.cpp -o compound_id.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/compound_id_v0.cpp -o compound_id_v0.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netschedule_api_wn_info.cpp -o netschedule_api_wn_info.o +/bin/rm -f libxconnserv.so .libxconnserv.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libxconnserv.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC grid_worker.o ns_client_factory.o grid_worker_app.o grid_client.o grid_client_app.o wn_commit_thread.o wn_main_loop.o wn_cleanup.o wn_offline_mode.o grid_control_thread.o grid_globals.o grid_rw_impl.o remote_app.o srv_connections.o netservice_api.o netservice_params.o netschedule_api.o netsIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/datatool.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/wsdlparser.cpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -19669,110 +19718,164 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ --std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/clparser.cpp -o clparser.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/json_over_uttp.cpp -o json_over_uttp.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netstorage.cpp -o netstorage.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netstorage_rpc.cpp -o netstorage_rpc.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netstorageobjectloc.cpp -o netstorageobjectloc.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netstorageobjectinfo.cpp -o netstorageobjectinfo.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_P_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/xsdlexer.cpp -o xsdlexer.o +P_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/xsdlexer.cpp -o xsdlexer.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/xsdparser.cpp -o xsdparser.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/wsdllexer.cpp -o wsdllexer.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/wsdlparser.cpp -o wsdlparser.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/wsdlstr.cpp -o wsdlstr.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/jsdlexer.cpp -o jsdlexer.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/jsdparser.cpp -o jsdparser.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ff/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netstorage_rpc.cpp: In constructor 'ncbi::CSendJsonOverSocket::CSendJsonOverSocket(ncbi::CSocket&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netstorage_rpc.cpp:115:55: warning: member 'ncbi::CSendJsonOverSocket::m_UTTPWriter' is used uninitialized [-Wuninitialized] - 115 | CSendJsonOverSocket(CSocket& sock) : m_JSONWriter(m_UTTPWriter), m_Socket(sock) {} - | ^~~~~~~~~~~~ -LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netstorage_direct_nc.cpp -o netstorage_direct_nc.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/ns_output_parser.cpp -o ns_output_parser.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/ns_job_serializer.cpp -o ns_job_serializer.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/compound_id.cpp -o compound_id.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/compound_id_v0.cpp -o compound_id_v0.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/connect/services/netschedule_api_wn_info.cpp -o netschedule_api_wn_info.o -/bin/rm -f libxconnserv.so .libxconnserv.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libxconnserv.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC grid_worker.o ns_client_factory.o grid_worker_app.o grid_client.o grid_client_app.o wn_commit_thread.o wn_main_loop.o wn_cleanup.o wn_offline_mode.o grid_control_thread.o grid_globals.o grid_rw_impl.o remote_app.o srv_connections.o netservice_api.o netservice_params.o netschedule_api.o netsile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/traversal_pattern_match_callback.cpp -o traversal_pattern_match_callback.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/traversal_code_generator.cpp -o traversal_code_generator.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/traversal_merger.cpp -o traversal_merger.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/traversal_node.cpp -o traversal_node.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/traversal_spec_file_parser.cpp -o traversal_spec_file_parser.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie datatool.o type.o namespace.o statictype.o enumtype.o reftype.o unitype.o blocktype.o choicetype.o typestr.o ptrstr.o stdstr.o classstr.o enumstr.o stlstr.o choicestr.o choiceptrstr.o value.o mcontainer.o module.o moduleset.o generate.o filecode.o code.o fileutil.o alexer.o aparser.o parser.o lexer.o exceptions.o comments.o srcutil.o dtdaux.o dtdlexer.o dtdparser.o rpcgen.o aliasstr.o xsdlexer.o xsdparser.o wsdllexer.o wsdlparser.o wsdlstr.o jsdlexer.o jsdparser.o traversal_pattern_match_callback.o traversal_code_generator.o traversal_merger.o traversal_node.o traversal_spec_fichedule_api_submitter.o netschedule_api_executor.o netschedule_api_reader.o netschedule_api_admin.o netschedule_api_getjob.o netschedule_key.o netschedule_api_expt.o netcache_key.o netcache_rw.o netcache_params.o netcache_api.o netcache_api_admin.o netcache_search.o netservice_protocol_parser.o util.o clparser.o json_over_uttp.o netstorage.o netstorage_rpc.o netstorageobjectloc.o netstorageobjectinfo.o netstorage_direct_nc.o ns_output_parser.o ns_job_serializer.o compound_id.o compound_id_v0.o netschedule_api_wn_info.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxthrserv -lxconnect -lxutil -lxncbi -lmbedtls -lmbedx509 -lmbedcrypto -lz +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffchedule_api_submitter.o netschedule_api_executor.o netschedule_api_reader.o netschedule_api_admin.o netschedule_api_getjob.o netschedule_key.o netschedule_api_expt.o netcache_key.o netcache_rw.o netcache_params.o netcache_api.o netcache_api_admin.o netcache_search.o netservice_protocol_parser.o util.o clparser.o json_over_uttp.o netstorage.o netstorage_rpc.o netstorageobjectloc.o netstorageobjectinfo.o netstorage_direct_nc.o ns_output_parser.o ns_job_serializer.o compound_id.o compound_id_v0.o netschedule_api_wn_info.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxthrserv -lxconnect -lxutil -lxncbi -lmbedtls -lmbedx509 -lmbedcrypto -lz /bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxconnserv.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib /bin/ln -f libxconnserv.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxconnserv.so /bin/ln -f .xconnserv.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xconnserv.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' -le_parser.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxser -lxutil -lxncbi -lm -lpthread -o datatool +ile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/traversal_pattern_match_callback.cpp -o traversal_pattern_match_callback.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/traversal_code_generator.cpp -o traversal_code_generator.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/traversal_merger.cpp -o traversal_merger.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/traversal_node.cpp -o traversal_node.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/serial/datatool/traversal_spec_file_parser.cpp -o traversal_spec_file_parser.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie datatool.o type.o namespace.o statictype.o enumtype.o reftype.o unitype.o blocktype.o choicetype.o typestr.o ptrstr.o stdstr.o classstr.o enumstr.o stlstr.o choicestr.o choiceptrstr.o value.o mcontainer.o module.o moduleset.o generate.o filecode.o code.o fileutil.o alexer.o aparser.o parser.o lexer.o exceptions.o comments.o srcutil.o dtdaux.o dtdlexer.o dtdparser.o rpcgen.o aliasstr.o xsdlexer.o xsdparser.o wsdllexer.o wsdlparser.o wsdlstr.o jsdlexer.o jsdparser.o traversal_pattern_match_callback.o traversal_code_generator.o traversal_merger.o traversal_node.o traversal_spec_file_parser.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxser -lxutil -lxncbi -lm -lpthread -o datatool /bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin /bin/ln -f datatool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial/datatool' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial/datatool' -cd objects/general/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -cd objects/biblio/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -cd objects/medline/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -cd objects/pub/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -cd objects/seqcode/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -cd objects/seq/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources +cd objects/general/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +cd objects/biblio/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +cd objects/medline/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +cd objects/pub/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +cd objects/seqcode/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +cd objects/seq/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +cd objects/seqset/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/general' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/biblio' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd objects/scoremat/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medline' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -cd objects/seqset/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -cd objects/scoremat/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd objects/blast/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pub' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -cd objects/blast/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd objects/blastdb/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +cd objects/genomecoll/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqcode' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -cd objects/blastdb/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources +make[4]: warning: -j21 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seq' -cd objects/genomecoll/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd objects/seqedit/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +cd objects/seqsplit/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqset' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/scoremat' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd objects/submit/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastdb' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd objects/variation/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd objects/id1/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqedit' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd objects/id2/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqsplit' +cd objects/taxon1/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/submit' +cd objects/blastxml/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' +cd objects/blastxml2/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd objtools/eutils/egquery/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml2' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh biblio all +cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqcode && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh seqcode all cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pub && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh pub all -cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh seqset all -cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh general all cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medline && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh medline all -cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqcode && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh seqcode all -cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh genome_collection all +cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh general all +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/egquery' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/scoremat && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh scoremat all -cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastdb && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh blastdb all +cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh seqset all cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blast && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh blast all +cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastdb && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh blastdb all +cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqsplit && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh seqsplit all +cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh genome_collection all +cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqedit && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh seqedit all +cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/variation && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh variation all +cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/submit && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh submit all +cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id2 && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh id2 all +cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id1 && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh id1 all +cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon1 && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh taxon1 all +cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml2 && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh blastxml2 all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seq' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh blastxml all +cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/egquery && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh --dtd egquery all make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seq' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seq' make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seq' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seq' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/Makefile.sources builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -w -j11 --jobserver-auth=9,10 all -make[6]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j11 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/Makefile.sources builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -w -j21 --jobserver-auth=9,10 all +make[6]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. +File egquery.module not found. Using defaults... +/usr/bin/make -w -j21 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=egquery MODULE_PATH=objtools/eutils/egquery MODULE_ASN=egquery.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/egquery' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ + -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m egquery.dtd -M "" -oA \ + -oc egquery -or objtools/eutils/egquery -odi -od egquery.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd egquery.dump \ + +datatool: 2.20.1 +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/egquery' +File blastxml.module not found. Using defaults... +/usr/bin/make -w -j21 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ + -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m blastxml.asn -M "" -oA \ + -oc blastxml -or objects/blastxml -odi -od blastxml.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd blastxml.dump \ + +datatool: 2.20.1 +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml' +/usr/bin/make -w -j21 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=seqcode MODULE_PATH=objects/seqcode MODULE_ASN=seqcode.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqcode' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m seqcode.asn -M "" -oA \ @@ -19781,9 +19884,33 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqcode' +/usr/bin/make -w -j21 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastdb' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ + -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m blastdb.asn -M "objects/seqloc/seqloc.asn" -oA \ + -oc blastdb -or objects/blastdb -odi -od blastdb.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd blastdb.dump \ + +datatool: 2.20.1 +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastdb' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/egquery' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastdb' +/usr/bin/make -w -j21 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medline/medline.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ + -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m seqset.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn" -oA \ + -oc seqset -or objects/seqset -odi -od seqset.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd seqset.dump \ + +datatool: 2.20.1 +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqcode' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j11 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j21 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=medline MODULE_PATH=objects/medline MODULE_ASN=medline.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medline' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m medline.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA \ @@ -19792,22 +19919,54 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medline' +/usr/bin/make -w -j21 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/submit' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ + -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m submit.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn" -oA \ + -oc submit -or objects/submit -odi -od submit.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd submit.dump \ + +datatool: 2.20.1 +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/submit' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medline' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j11 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pub' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j21 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id1' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m pub.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA \ - -oc pub -or objects/pub -odi -od pub.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd pub.dump \ + -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m id1.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn" -oA \ + -oc id1 -or objects/id1 -odi -od id1.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd id1.dump \ datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pub' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqcode' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pub' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medline' -/usr/bin/make -w -j11 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id1' +File blastxml2.module not found. Using defaults... +/usr/bin/make -w -j21 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml2' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ + -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m blastxml2.asn -M "" -oA \ + -oc blastxml2 -or objects/blastxml2 -odi -od blastxml2.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd blastxml2.dump \ + +datatool: 2.20.1 +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml2' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/submit' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml2' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j21 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon1' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ + -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m taxon1.asn -M "objects/seqfeat/seqfeat.asn" -oA \ + -oc taxon1 -or objects/taxon1 -odi -od taxon1.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd taxon1.dump \ + +datatool: 2.20.1 +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon1' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id1' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j21 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=scoremat MODULE_PATH=objects/scoremat MODULE_ASN=scoremat.asn MODULE_IMPORT='objects/seqset/seqset objects/general/general' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn' IMPFILES='objects/seqset/seqset.asn objects/general/general.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/scoremat' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m scoremat.asn -M "objects/seqset/seqset.asn objects/general/general.asn" -oA \ @@ -19816,94 +19975,190 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/scoremat' +/usr/bin/make -w -j21 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=pub MODULE_PATH=objects/pub MODULE_ASN=pub.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pub' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ + -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m pub.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA \ + -oc pub -or objects/pub -odi -od pub.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd pub.dump \ + +datatool: 2.20.1 +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pub' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon1' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/egquery' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/scoremat' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medline' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastdb' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pub' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medline' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqcode' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqset' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastdb' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id1' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqcode' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pub' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/egquery' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medline' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqset' +/usr/bin/make -w -j21 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ + -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m general.asn -M "" -oA \ + -oc general -or objects/general -odi -od general.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd general.dump \ + +datatool: 2.20.1 +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml2' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqcode' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/submit' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastdb' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pub' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/egquery' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/scoremat' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medline' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon1' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqset' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastdb' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqcode' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medline' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pub' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/scoremat' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medline' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/egquery' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqset' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/submit' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqcode' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pub' -/usr/bin/make -w -j11 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=blastdb MODULE_PATH=objects/blastdb MODULE_ASN=blastdb.asn MODULE_IMPORT='objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastdb' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml2' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastdb' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' +/usr/bin/make -w -j21 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqfeat/seqfeat.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pub/pub.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/variation' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m blastdb.asn -M "objects/seqloc/seqloc.asn" -oA \ - -oc blastdb -or objects/blastdb -odi -od blastdb.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd blastdb.dump \ + -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA \ + -oc variation -or objects/variation -odi -od variation.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd variation.dump \ datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastdb' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/variation' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/scoremat' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pub' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastdb' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/scoremat' -/usr/bin/make -w -j11 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=seqset MODULE_PATH=objects/seqset MODULE_ASN=seqset.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seq/seq' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medline/medline.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medline' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/egquery' +/usr/bin/make -w -j21 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqalign/seqalign.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqsplit' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m seqset.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seq/seq.asn" -oA \ - -oc seqset -or objects/seqset -odi -od seqset.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd seqset.dump \ + -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m seqsplit.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn" -oA \ + -oc seqsplit -or objects/seqsplit -odi -od seqsplit.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd seqsplit.dump \ datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqsplit' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/submit' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml2' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/scoremat' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/variation' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pub' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqsplit' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml2' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/submit' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/scoremat' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j11 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=general MODULE_PATH=objects/general MODULE_ASN=general.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pub' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/scoremat' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/submit' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml2' +/usr/bin/make[4] (Makefile.seqset.lib): Nothing to be done for `export-headers'. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pub' +/usr/bin/make[4] (Makefile.blastxml.lib): Nothing to be done for `export-headers'. +/usr/bin/make -w -j21 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqsplit/seqsplit.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id2' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m general.asn -M "" -oA \ - -oc general -or objects/general -odi -od general.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd general.dump \ + -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m id2.asn -M "objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn" -oA \ + -oc id2 -or objects/id2 -odi -od id2.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd id2.dump \ datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general' -/usr/bin/make[4] (Makefile.medline.lib): Nothing to be done for `export-headers'. -/usr/bin/make[4] (Makefile.seqcode.lib): Nothing to be done for `export-headers'. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/scoremat' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastdb' -/usr/bin/make[4] (Makefile.pub.lib): Nothing to be done for `export-headers'. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastdb' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.scoremat.lib): Nothing to be done for `export-headers'. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastdb' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id2' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/general' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqset' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastdb' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/variation' +/usr/bin/make[4] (Makefile.seqcode.lib): Nothing to be done for `export-headers'. +/usr/bin/make[4] (Makefile.blastdb.lib): Nothing to be done for `export-headers'. +/usr/bin/make[4] (Makefile.medline.lib): Nothing to be done for `export-headers'. +/usr/bin/make[4] (Makefile.egquery.lib): Nothing to be done for `export-headers'. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqsplit' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id2' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/general' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqset' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastdb' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqset' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.id1.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/general' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqset' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.submit.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqsplit' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.scoremat.lib): Nothing to be done for `export-headers'. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation' +/usr/bin/make[4] (Makefile.blastxml2.lib): Nothing to be done for `export-headers'. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/general' -/usr/bin/make -w -j11 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +/usr/bin/make[4] (Makefile.taxon1.lib): Nothing to be done for `export-headers'. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id2' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.pub.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqsplit' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqsplit' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j21 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=biblio MODULE_PATH=objects/biblio MODULE_ASN=biblio.asn MODULE_IMPORT='objects/general/general' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn' IMPFILES='objects/general/general.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m biblio.asn -M "objects/general/general.asn" -oA \ @@ -19912,13 +20167,74 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqsplit' +/usr/bin/make -w -j21 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqfeat/seqfeat.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ + -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA \ + -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump \ + +datatool: 2.20.1 +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.blastdb.lib): Nothing to be done for `export-headers'. -/usr/bin/make[4] (Makefile.seqset.lib): Nothing to be done for `export-headers'. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j21 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqalign/seqalign.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqfeat/seqfeat.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqedit' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ + -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m seqedit.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn" -oA \ + -oc seqedit -or objects/seqedit -odi -od seqedit.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd seqedit.dump \ + +datatool: 2.20.1 +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqedit' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' /usr/bin/make[4] (Makefile.general.lib): Nothing to be done for `export-headers'. -/usr/bin/make -w -j11 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/scoremat/scoremat.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqedit' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' +make[5]: *** No rule to make target '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/SQLITE3.enabled', needed by 'requirements'. Stop. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' +NOTE: skipping project "local_taxon" due to unmet requirements +/usr/bin/make[4] (Makefile.variation.lib): Nothing to be done for `export-headers'. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.seqsplit.lib): Nothing to be done for `export-headers'. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqedit' +/usr/bin/make[4] (Makefile.id1cli.lib): Nothing to be done for `export-headers'. +cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh gencoll_client all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/biblio' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/biblio' +/usr/bin/make[4] (Makefile.id2.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqedit' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/biblio' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqedit' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/biblio' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqedit' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +Waiting for /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll/make_asn.lockmake[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqedit' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j21 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=blast MODULE_PATH=objects/blast MODULE_ASN=blast.asn MODULE_IMPORT='objects/scoremat/scoremat objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc objects/seqalign/seqalign' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/scoremat/scoremat.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqalign/seqalign.asn' IMPFILES='objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blast' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m blast.asn -M "objects/scoremat/scoremat.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn objects/seqalign/seqalign.asn" -oA \ @@ -19927,47 +20243,31 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blast' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/biblio' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' +/usr/bin/make[4] (Makefile.biblio.lib): Nothing to be done for `export-headers'. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blast' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/biblio' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/biblio' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.seqedit.lib): Nothing to be done for `export-headers'. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blast' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/biblio' +/usr/bin/make[4] (Makefile.id2cli.lib): Nothing to be done for `export-headers'. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.biblio.lib): Nothing to be done for `export-headers'. -/usr/bin/make -w -j11 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=genome_collection MODULE_PATH=objects/genomecoll MODULE_ASN=genome_collection.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqfeat/seqfeat objects/seq/seq' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqfeat/seqfeat.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m genome_collection.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqfeat/seqfeat.asn objects/seq/seq.asn" -oA \ - -oc genome_collection -or objects/genomecoll -odi -od genome_collection.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd genome_collection.dump \ - -datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll' /usr/bin/make[4] (Makefile.blast.lib): Nothing to be done for `export-headers'. -cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh gencoll_client all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -Waiting for /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll/make_asn.lockmake[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' /usr/bin/make[4] (Makefile.xnetblastcli.lib): Nothing to be done for `export-headers'. -make[7]: warning: -j11 forced in submake: resetting jobserver mode. make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seq' status=0 ; \ -MAKE="/usr/bin/make -w -j11 --jobserver-auth=12,14"; \ +MAKE="/usr/bin/make -w -j21 --jobserver-auth=12,14"; \ export MAKE; \ for x in seqalign seqblock seqfeat seqloc seqres seqtable; do \ d=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../$x ; \ @@ -19978,7 +20278,7 @@ echo "#include \"../$x/${x}___.cpp\"" > ${x}___.cpp ; \ done ; \ exit $status -/usr/bin/make -w -j11 --jobserver-auth=12,14 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medline/medline.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src +/usr/bin/make -w -j21 --jobserver-auth=12,14 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=seqalign MODULE_PATH=objects/seqalign MODULE_ASN=seqalign.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medline/medline.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqalign' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m seqalign.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ @@ -19987,7 +20287,7 @@ datatool: 2.20.1 make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqalign' -/usr/bin/make -w -j11 --jobserver-auth=12,14 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medline/medline.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src +/usr/bin/make -w -j21 --jobserver-auth=12,14 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=seqblock MODULE_PATH=objects/seqblock MODULE_ASN=seqblock.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medline/medline.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqblock' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m seqblock.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ @@ -19995,10 +20295,10 @@ -ocvs -pch 'ncbi_pch.hpp' -fd seqblock.dump \ datatool: 2.20.1 -make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+make[7]: warning: -j11 forced in submake: resetting jobserver mode. -make[7]: warning: -j11 forced in submake: resetting jobserver mode. +make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+make[7]: warning: -j21 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. -2.12.0+ds/c++/src/objects/seqblock' -/usr/bin/make -w -j11 --jobserver-auth=12,14 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medline/medline.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pub/pub.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src +/usr/bin/make -w -j21 --jobserver-auth=12,14 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=seqfeat MODULE_PATH=objects/seqfeat MODULE_ASN=seqfeat.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/pub/pub objects/seqloc/seqloc objects/seq/seq' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medline/medline.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pub/pub.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqfeat' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m seqfeat.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/pub/pub.asn objects/seqloc/seqloc.asn objects/seq/seq.asn" -oA \ @@ -20007,7 +20307,7 @@ datatool: 2.20.1 make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqfeat' -/usr/bin/make -w -j11 --jobserver-auth=12,14 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src +/usr/bin/make -w -j21 --jobserver-auth=12,14 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=seqloc MODULE_PATH=objects/seqloc MODULE_ASN=seqloc.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seqfeat/seqfeat' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m seqloc.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seqfeat/seqfeat.asn" -oA \ @@ -20016,413 +20316,148 @@ datatool: 2.20.1 make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc' -/usr/bin/make -w -j11 --jobserver-auth=12,14 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbmake[7]: warning: -j11 forced in submake: resetting jobserver mode. -make[7]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqcode' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/general' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pub' +/usr/bin/make -w -j21 --jobserver-auth=12,14 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=seqres MODULE_PATH=objects/seqres MODULE_ASN=seqres.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbmake[7]: warning: -j21 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqset' -cd objects/seqedit/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medline' -cd objects/seqsplit/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -cd objects/submit/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -cd objects/variation/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -cd objects/id1/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqedit' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqsplit' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastdb' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/scoremat' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/submit' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -cd objects/id2/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/general' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqsplit' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqcode' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/biblio' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -cd objects/taxon1/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +cd objtools/eutils/ehistory/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pub' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' -cd objects/blastxml/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' -cd objects/blastxml2/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml2' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/submit && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh submit all -cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqedit && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh seqedit all -cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqsplit && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh seqsplit all -cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id1 && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh id1 all -cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id2 && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh id2 all -cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/variation && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh variation all -cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml2 && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh blastxml2 all -cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon1 && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh taxon1 all -cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh blastxml all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -File blastxml.module not found. Using defaults... -/usr/bin/make -w -j11 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=blastxml MODULE_PATH=objects/blastxml MODULE_ASN=blastxml.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m blastxml.asn -M "" -oA \ - -oc blastxml -or objects/blastxml -odi -od blastxml.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd blastxml.dump \ - -datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml' -File blastxml2.module not found. Using defaults... -/usr/bin/make -w -j11 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=blastxml2 MODULE_PATH=objects/blastxml2 MODULE_ASN=blastxml2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml2' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m blastxml2.asn -M "" -oA \ - -oc blastxml2 -or objects/blastxml2 -odi -od blastxml2.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd blastxml2.dump \ - -datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml2' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml2' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml' -/usr/bin/make -w -j11 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=submit MODULE_PATH=objects/submit MODULE_ASN=submit.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/seq/seq objects/seqset/seqset objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/submit' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m submit.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/seq/seq.asn objects/seqset/seqset.asn objects/seqloc/seqloc.asn" -oA \ - -oc submit -or objects/submit -odi -od submit.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd submit.dump \ - -datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/submit' -/usr/bin/make -w -j11 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=id1 MODULE_PATH=objects/id1 MODULE_ASN=id1.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id1' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m id1.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn" -oA \ - -oc id1 -or objects/id1 -odi -od id1.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd id1.dump \ - -datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id1' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml2' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/submit' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id1' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j11 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=taxon1 MODULE_PATH=objects/taxon1 MODULE_ASN=taxon1.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon1' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m taxon1.asn -M "objects/seqfeat/seqfeat.asn" -oA \ - -oc taxon1 -or objects/taxon1 -odi -od taxon1.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd taxon1.dump \ - -datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon1' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml2' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon1' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/submit' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml2' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id1' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml2' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/submit' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml2' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon1' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/submit' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/submit' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/submit' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' -/usr/bin/make[4] (Makefile.blastxml.lib): Nothing to be done for `export-headers'. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' -/usr/bin/make[4] (Makefile.blastxml2.lib): Nothing to be done for `export-headers'. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j11 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=seqsplit MODULE_PATH=objects/seqsplit MODULE_ASN=seqsplit.asn MODULE_IMPORT='objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqalign/seqalign.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqsplit' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m seqsplit.asn -M "objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn" -oA \ - -oc seqsplit -or objects/seqsplit -odi -od seqsplit.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd seqsplit.dump \ - -datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqsplit' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqsplit' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j11 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=variation MODULE_PATH=objects/variation MODULE_ASN=variation.asn MODULE_IMPORT='objects/seqfeat/seqfeat objects/general/general objects/seqloc/seqloc objects/pub/pub objects/seq/seq' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqfeat/seqfeat.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pub/pub.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq.asn' IMPFILES='objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/variation' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m variation.asn -M "objects/seqfeat/seqfeat.asn objects/general/general.asn objects/seqloc/seqloc.asn objects/pub/pub.asn objects/seq/seq.asn" -oA \ - -oc variation -or objects/variation -odi -od variation.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd variation.dump \ - -datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/variation' -/usr/bin/make -w -j11 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=seqedit MODULE_PATH=objects/seqedit MODULE_ASN=seqedit.asn MODULE_IMPORT='objects/general/general objects/seqloc/seqloc objects/seqset/seqset objects/seq/seq objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset/seqset.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqalign/seqalign.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqfeat/seqfeat.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqres/seqres.asn' IMPFILES='objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqedit' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m seqedit.asn -M "objects/general/general.asn objects/seqloc/seqloc.asn objects/seqset/seqset.asn objects/seq/seq.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn" -oA \ - -oc seqedit -or objects/seqedit -odi -od seqedit.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd seqedit.dump \ - -datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqedit' -/usr/bin/make[4] (Makefile.id1.lib): Nothing to be done for `export-headers'. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/variation' -/usr/bin/make[4] (Makefile.submit.lib): Nothing to be done for `export-headers'. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j11 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=id2 MODULE_PATH=objects/id2 MODULE_ASN=id2.asn MODULE_IMPORT='objects/seqsplit/seqsplit objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqsplit/seqsplit.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id2' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m id2.asn -M "objects/seqsplit/seqsplit.asn objects/seqloc/seqloc.asn" -oA \ - -oc id2 -or objects/id2 -odi -od id2.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd id2.dump \ - -datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id2' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqsplit' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqedit' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id2' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.taxon1.lib): Nothing to be done for `export-headers'. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/variation' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqsplit' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqedit' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id2' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqsplit' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqsplit' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqedit' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqsplit' -.make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqedit' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' -make[5]: *** No rule to make target '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/SQLITE3.enabled', needed by 'requirements'. Stop. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -NOTE: skipping project "local_taxon" due to unmet requirements -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqedit' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' - -Acquired /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll/make_asn.lock for PID 18990 (make_asn) -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqedit' -/usr/bin/make[4] (Makefile.id1cli.lib): Nothing to be done for `export-headers'. -/usr/bin/make[4] (Makefile.seqsplit.lib): Nothing to be done for `export-headers'. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' -/usr/bin/make[4] (Makefile.variation.lib): Nothing to be done for `export-headers'. -/usr/bin/make[4] (Makefile.id2.lib): Nothing to be done for `export-headers'. -/usr/bin/make[4] (Makefile.seqedit.lib): Nothing to be done for `export-headers'. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' -/usr/bin/make[4] (Makefile.id2cli.lib): Nothing to be done for `export-headers'. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j11 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA \ - -oc gencoll_client -or objects/genomecoll -odi -od gencoll_client.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd gencoll_client.dump \ - -datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' -/usr/bin/make[4] (Makefile.genome_collection.lib): Nothing to be done for `export-headers'. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: *** No rule to make target '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/SQLITE3.enabled', needed by 'requirements'. Stop. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' -NOTE: skipping project "gencoll_client" due to unmet requirements -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' -i-blast+-2.12.0+ds/c++/src/objects/medline/medline.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqres' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m seqres.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ - -oc seqres -or objects/seqres -odi -od seqres.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd seqres.dump \ - -datatool: 2.20.1 -make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqres' -/usr/bin/make -w -j11 --jobserver-auth=12,14 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqtable' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m seqtable.asn -M "objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn" -oA \ - -oc seqtable -or objects/seqtable -odi -od seqtable.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd seqtable.dump \ - -datatool: 2.20.1 -make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqtable' -make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seq' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seq' -cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh seq all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j11 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pub/pub.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medline/medline.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqblock/seqblock.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqalign/seqalign.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqfeat/seqfeat.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqres/seqres.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m seq.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn" -oA \ - -oc seq -or objects/seq -odi -od seq.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd seq.dump \ - -datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seq' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seq' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seq' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seq' -/usr/bin/make[4] (Makefile.seq.lib): Nothing to be done for `export-headers'. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' +cd objtools/eutils/einfo/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqedit' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/submit' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation' -cd objtools/eutils/egquery/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' -cd objtools/eutils/ehistory/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -cd objtools/eutils/einfo/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -cd objtools/eutils/elink/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqsplit' -cd objects/entrez2/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -cd objtools/eutils/epost/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/egquery' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' +cd objtools/eutils/elink/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +cd objects/entrez2/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +cd objtools/eutils/epost/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastdb' +cd objtools/eutils/esearch/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medline' +cd objtools/eutils/espell/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/ehistory' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml2' -cd objtools/eutils/esearch/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -cd objtools/eutils/espell/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources +make[4]: warning: -j21 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/einfo' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd objtools/eutils/esummary/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/elink' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd objtools/eutils/uilist/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +cd objects/gbseq/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/epost' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd objects/medlars/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' +cd objects/pubmed/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esearch' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/espell' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml' -cd objtools/eutils/esummary/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd objects/mla/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esummary' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/egquery && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh --dtd egquery all +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd objects/taxon3/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/uilist' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medlars' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/gbseq' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pubmed' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd objects/valid/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 sources +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml2' +cd objects/general/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=general UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/egquery' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon3' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd objects/seqcode/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqcode UNIX_PROJ="" sources= configurables=configurables.null +cd objects/blastxml/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blastxml UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/valid' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd objects/blastxml2/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blastxml2 UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/general' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/elink && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh --dtd elink all +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqcode' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/ehistory && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh --dtd ehistory all +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/epost && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh --dtd epost all cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/einfo && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh --dtd einfo all +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml2' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/entrez2 && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh entrez2 all -cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/elink && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh --dtd elink all -cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/epost && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh --dtd epost all -cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esearch && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh --dtd esearch all -cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esummary && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh --dtd esummary all cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/espell && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh --dtd espell all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -File egquery.module not found. Using defaults... -/usr/bin/make -w -j11 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=egquery MODULE_PATH=objtools/eutils/egquery MODULE_ASN=egquery.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/egquery' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m egquery.dtd -M "" -oA \ - -oc egquery -or objtools/eutils/egquery -odi -od egquery.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd egquery.dump \ - -datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/egquery' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/egquery' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/egquery' -File epost.module not found. Using defaults... -/usr/bin/make -w -j11 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=epost MODULE_PATH=objtools/eutils/epost MODULE_ASN=epost.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/epost' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m epost.dtd -M "" -oA \ - -oc epost -or objtools/eutils/epost -odi -od epost.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd epost.dump \ - -datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/epost' +cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esummary && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh --dtd esummary all +cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medlars && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh medlars all +cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/gbseq && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh gbseq all +cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/uilist && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh --dtd uilist all +cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esearch && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh --dtd esearch all +cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pubmed && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh pubmed all +cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon3 && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh taxon3 all +cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/mla && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh mla all +cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/valid && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh valid all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqcode' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/general' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml2' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/general' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqcode' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/general' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqcode' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml2' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml2' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqcode' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/general' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml2' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqcode TMPL=seqcode -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general TMPL=general -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml TMPL=blastxml -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml2 TMPL=blastxml2 -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. File espell.module not found. Using defaults... -/usr/bin/make -w -j11 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=espell MODULE_PATH=objtools/eutils/espell MODULE_ASN=espell.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +/usr/bin/make -w -j21 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=espell MODULE_PATH=objtools/eutils/espell MODULE_ASN=espell.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/espell' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m espell.dtd -M "" -oA \ @@ -20431,39 +20466,22 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/espell' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/epost' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -File einfo.module not found. Using defaults... -/usr/bin/make -w -j11 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=einfo MODULE_PATH=objtools/eutils/einfo MODULE_ASN=einfo.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/einfo' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m einfo.dtd -M "" -oA \ - -oc einfo -or objtools/eutils/einfo -odi -od einfo.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd einfo.dump \ - -datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/einfo' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/egquery' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/espell' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/einfo' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/egquery' -File esearch.module not found. Using defaults... -/usr/bin/make -w -j11 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=esearch MODULE_PATH=objtools/eutils/esearch MODULE_ASN=esearch.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esearch' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +File epost.module not found. Using defaults... +/usr/bin/make -w -j21 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=epost MODULE_PATH=objtools/eutils/epost MODULE_ASN=epost.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/epost' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m esearch.dtd -M "" -oA \ - -oc esearch -or objtools/eutils/esearch -odi -od esearch.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd esearch.dump \ + -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m epost.dtd -M "" -oA \ + -oc epost -or objtools/eutils/epost -odi -od epost.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd epost.dump \ datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esearch' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/egquery' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/epost' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/epost' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. File ehistory.module not found. Using defaults... -/usr/bin/make -w -j11 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=ehistory MODULE_PATH=objtools/eutils/ehistory MODULE_ASN=ehistory.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +/usr/bin/make -w -j21 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=ehistory MODULE_PATH=objtools/eutils/ehistory MODULE_ASN=ehistory.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/ehistory' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m ehistory.dtd -M "" -oA \ @@ -20472,31 +20490,17 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/ehistory' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/epost' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esearch' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/espell' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/egquery' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/einfo' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/ehistory' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/epost' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/espell' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -File elink.module not found. Using defaults... -/usr/bin/make -w -j11 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=elink MODULE_PATH=objtools/eutils/elink MODULE_ASN=elink.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/elink' +/usr/bin/make -w -j21 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medlars' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m elink.dtd -M "" -oA \ - -oc elink -or objtools/eutils/elink -odi -od elink.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd elink.dump \ + -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m medlars.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA \ + -oc medlars -or objects/medlars -odi -od medlars.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd medlars.dump \ datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/elink' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esearch' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medlars' File esummary.module not found. Using defaults... -/usr/bin/make -w -j11 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=esummary MODULE_PATH=objtools/eutils/esummary MODULE_ASN=esummary.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +/usr/bin/make -w -j21 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=esummary MODULE_PATH=objtools/eutils/esummary MODULE_ASN=esummary.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esummary' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m esummary.dtd -M "" -oA \ @@ -20505,93 +20509,28 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esummary' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/einfo' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/epost' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/elink' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/ehistory' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/epost' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/einfo' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/espell' -/usr/bin/make[4] (Makefile.egquery.lib): Nothing to be done for `export-headers'. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esearch' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/einfo' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/epost' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/espell' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/einfo' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/ehistory' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esearch' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esummary' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/espell' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/elink' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/ehistory' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esearch' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/ehistory' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esearch' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/elink' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.epost.lib): Nothing to be done for `export-headers'. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/ehistory' -/usr/bin/make[4] (Makefile.einfo.lib): Nothing to be done for `export-headers'. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/elink' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/elink' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.espell.lib): Nothing to be done for `export-headers'. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/elink' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esummary' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' -/usr/bin/make[4] (Makefile.esearch.lib): Nothing to be done for `export-headers'. -cd objtools/eutils/uilist/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/uilist' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.ehistory.lib): Nothing to be done for `export-headers'. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esummary' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.elink.lib): Nothing to be done for `export-headers'. -/usr/bin/make -w -j11 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/entrez2' +File esearch.module not found. Using defaults... +/usr/bin/make -w -j21 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=esearch MODULE_PATH=objtools/eutils/esearch MODULE_ASN=esearch.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esearch' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m entrez2.asn -M "" -oA \ - -oc entrez2 -or objects/entrez2 -odi -od entrez2.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd entrez2.dump \ + -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m esearch.dtd -M "" -oA \ + -oc esearch -or objtools/eutils/esearch -odi -od esearch.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd esearch.dump \ datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/entrez2' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esummary' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/entrez2' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esummary' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esummary' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/entrez2' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/uilist && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh --dtd uilist all -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' -/usr/bin/make[4] (Makefile.esummary.lib): Nothing to be done for `export-headers'. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' -/usr/bin/make[4] (Makefile.entrez2.lib): Nothing to be done for `export-headers'. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' -/usr/bin/make[4] (Makefile.entrez2cli.lib): Nothing to be done for `export-headers'. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esearch' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/ehistory' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esearch' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medlars' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esummary' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/espell' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/epost' File uilist.module not found. Using defaults... -/usr/bin/make -w -j11 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=uilist MODULE_PATH=objtools/eutils/uilist MODULE_ASN=uilist.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +/usr/bin/make -w -j21 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=uilist MODULE_PATH=objtools/eutils/uilist MODULE_ASN=uilist.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/uilist' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m uilist.dtd -M "" -oA \ @@ -20600,23 +20539,45 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/uilist' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/ehistory' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esearch' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/uilist' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/uilist' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/uilist' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/uilist' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/uilist' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/uilist' -/usr/bin/make[4] (Makefile.uilist.lib): Nothing to be done for `export-headers'. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seq' -cd objects/gbseq/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/gbseq' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/gbseq && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh gbseq all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j11 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esummary' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medlars' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/espell' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/epost' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esearch' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/ehistory' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esummary' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/epost' +/usr/bin/make -w -j21 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pubmed' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ + -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m pubmed.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA \ + -oc pubmed -or objects/pubmed -odi -od pubmed.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd pubmed.dump \ + +datatool: 2.20.1 +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pubmed' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/espell' +File elink.module not found. Using defaults... +/usr/bin/make -w -j21 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=elink MODULE_PATH=objtools/eutils/elink MODULE_ASN=elink.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/elink' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ + -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m elink.dtd -M "" -oA \ + -oc elink -or objtools/eutils/elink -odi -od elink.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd elink.dump \ + +datatool: 2.20.1 +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/elink' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esearch' +/usr/bin/make -w -j21 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=gbseq MODULE_PATH=objects/gbseq MODULE_ASN=gbseq.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/gbseq' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m gbseq.asn -M "" -oA \ @@ -20625,105 +20586,72 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/gbseq' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esummary' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/ehistory' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/epost' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/uilist' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pubmed' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medlars' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +File einfo.module not found. Using defaults... +/usr/bin/make -w -j21 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=einfo MODULE_PATH=objtools/eutils/einfo MODULE_ASN=einfo.dtd MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/einfo' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ + -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m einfo.dtd -M "" -oA \ + -oc einfo -or objtools/eutils/einfo -odi -od einfo.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd einfo.dump \ + +datatool: 2.20.1 +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/einfo' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/elink' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/ehistory' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/espell' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esearch' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/gbseq' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/gbseq' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/gbseq' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/gbseq' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/gbseq' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/gbseq' -/usr/bin/make[4] (Makefile.gbseq.lib): Nothing to be done for `export-headers'. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/egquery' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/einfo' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/ehistory' -cd objects/medlars/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -cd objects/pubmed/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' -cd objects/mla/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -cd objects/taxon3/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medlars' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pubmed' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon3' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/elink' -cd objects/valid/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 sources -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esearch' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/epost' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/valid' -cd objects/general/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=general UNIX_PROJ="" sources= configurables=configurables.null -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -cd objects/seqcode/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqcode UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esummary' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/espell' -cd objects/blastxml/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blastxml UNIX_PROJ="" sources= configurables=configurables.null -cd objects/blastxml2/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blastxml2 UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/general' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqcode' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml2' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medlars && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh medlars all -cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pubmed && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh pubmed all -cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon3 && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh taxon3 all -cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/mla && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh mla all -cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/valid && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh valid all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/general' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/general' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml2' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/general' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqcode' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml2' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/general' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqcode' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml2' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqcode' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml2' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqcode' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml TMPL=blastxml -w -j11 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml2 TMPL=blastxml2 -w -j11 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general TMPL=general -w -j11 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqcode TMPL=seqcode -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j11 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=medlars MODULE_PATH=objects/medlars MODULE_ASN=medlars.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/biblio.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medlars' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esummary' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/epost' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/einfo' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medlars' +.make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/ehistory' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/espell' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medlars' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/uilist' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esummary' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j21 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medline/medline.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medlars/medlars.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pubmed/pubmed.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/mla' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m medlars.asn -M "objects/general/general.asn objects/biblio/biblio.asn" -oA \ - -oc medlars -or objects/medlars -odi -od medlars.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd medlars.dump \ + -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m mla.asn -M "objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn" -oA \ + -oc mla -or objects/mla -odi -od mla.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd mla.dump \ datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medlars' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medlars' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j11 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/mla' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esearch' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pubmed' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medlars' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/uilist' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/mla' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/elink' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/einfo' + +Acquired /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll/make_asn.lock for PID 94167 (make_asn) +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/uilist' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pubmed' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/gbseq' +/usr/bin/make -w -j21 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=taxon3 MODULE_PATH=objects/taxon3 MODULE_ASN=taxon3.asn MODULE_IMPORT='objects/seqfeat/seqfeat' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqfeat/seqfeat.asn' IMPFILES='objects/seqfeat/seqfeat.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon3' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m taxon3.asn -M "objects/seqfeat/seqfeat.asn" -oA \ @@ -20732,70 +20660,62 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon3' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medlars' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.epost.lib): Nothing to be done for `export-headers'. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/uilist' +/usr/bin/make[4] (Makefile.esummary.lib): Nothing to be done for `export-headers'. +/usr/bin/make[4] (Makefile.ehistory.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/einfo' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.espell.lib): Nothing to be done for `export-headers'. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon3' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -w -j11 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=pubmed MODULE_PATH=objects/pubmed MODULE_ASN=pubmed.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/medline/medline' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medline/medline.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pubmed' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m pubmed.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn" -oA \ - -oc pubmed -or objects/pubmed -odi -od pubmed.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd pubmed.dump \ - -datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pubmed' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medlars' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medlars' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pubmed' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon3' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medlars' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/uilist' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medlars' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pubmed' -cd objtools/eutils/egquery/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=egquery UNIX_PROJ="" sources= configurables=configurables.null -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon3' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/egquery' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon3' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pubmed' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon3' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/mla' +/usr/bin/make[4] (Makefile.esearch.lib): Nothing to be done for `export-headers'. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pubmed' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon3' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/elink' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/einfo' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/gbseq' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/einfo' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pubmed' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/elink' /usr/bin/make[4] (Makefile.medlars.lib): Nothing to be done for `export-headers'. -/usr/bin/make -w -j11 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=mla MODULE_PATH=objects/mla MODULE_ASN=mla.asn MODULE_IMPORT='objects/biblio/biblio objects/medline/medline objects/medlars/medlars objects/pubmed/pubmed objects/pub/pub' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medline/medline.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medlars/medlars.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pubmed/pubmed.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pub/pub.asn' IMPFILES='objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/mla' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/gbseq' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/einfo' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pubmed' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/elink' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon3' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/gbseq' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j21 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=entrez2 MODULE_PATH=objects/entrez2 MODULE_ASN=entrez2.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/entrez2' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ - -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m mla.asn -M "objects/biblio/biblio.asn objects/medline/medline.asn objects/medlars/medlars.asn objects/pubmed/pubmed.asn objects/pub/pub.asn" -oA \ - -oc mla -or objects/mla -odi -od mla.def -oex '' \ - -ocvs -pch 'ncbi_pch.hpp' -fd mla.dump \ + -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m entrez2.asn -M "" -oA \ + -oc entrez2 -or objects/entrez2 -odi -od entrez2.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd entrez2.dump \ datatool: 2.20.1 -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/mla' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pubmed' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/mla' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make[4] (Makefile.taxon3.lib): Nothing to be done for `export-headers'. -/usr/bin/make[4] (Makefile.pubmed.lib): Nothing to be done for `export-headers'. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/mla' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/egquery' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/egquery' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/egquery' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/entrez2' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/elink' +/usr/bin/make[4] (Makefile.uilist.lib): Nothing to be done for `export-headers'. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/gbseq' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/entrez2' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon3' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/egquery' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon3' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' -/usr/bin/make -w -j11 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +/usr/bin/make -w -j21 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=valid MODULE_PATH=objects/valid MODULE_ASN=valid.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/valid' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m valid.asn -M "" -oA \ @@ -20804,55 +20724,119 @@ datatool: 2.20.1 make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/valid' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon3' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/entrez2' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/valid' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/egquery TMPL=egquery -w -j11 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.pubmed.lib): Nothing to be done for `export-headers'. +/usr/bin/make[4] (Makefile.elink.lib): Nothing to be done for `export-headers'. +/usr/bin/make[4] (Makefile.einfo.lib): Nothing to be done for `export-headers'. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon3' +/usr/bin/make[4] (Makefile.gbseq.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/valid' /usr/bin/make[4] (Makefile.mla.lib): Nothing to be done for `export-headers'. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/valid' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/valid' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/valid' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/valid' +/usr/bin/make[4] (Makefile.taxon3.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/valid' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/valid' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' +/usr/bin/make[4] (Makefile.entrez2.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. /usr/bin/make[4] (Makefile.valid.lib): Nothing to be done for `export-headers'. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' /usr/bin/make[4] (Makefile.mlacli.lib): Nothing to be done for `export-headers'. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/gbseq' -cd objtools/eutils/ehistory/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ehistory UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/ehistory' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/ehistory' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/ehistory' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/ehistory' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/ehistory' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/ehistory TMPL=ehistory -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/egquery/EGQueryResult_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/egquery/egquery___.cpp:2: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:36: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make[4] (Makefile.entrez2cli.lib): Nothing to be done for `export-headers'. +/usr/bin/make -w -j21 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=gencoll_client MODULE_PATH=objects/genomecoll MODULE_ASN=gencoll_client.asn MODULE_IMPORT='objects/genomecoll/genome_collection' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll/genome_collection.asn' IMPFILES='objects/genomecoll/genome_collection.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ + -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m gencoll_client.asn -M "objects/genomecoll/genome_collection.asn" -oA \ + -oc gencoll_client -or objects/genomecoll -odi -od gencoll_client.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd gencoll_client.dump \ + +datatool: 2.20.1 +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' +/usr/bin/make[4] (Makefile.genome_collection.lib): Nothing to be done for `export-headers'. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: *** No rule to make target '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/SQLITE3.enabled', needed by 'requirements'. Stop. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' +NOTE: skipping project "gencoll_client" due to unmet requirements +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' +i-blast+-2.12.0+ds/c++/src/objects/medline/medline.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src +make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqres' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ + -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m seqres.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/medline/medline.asn objects/seqloc/seqloc.asn" -oA \ + -oc seqres -or objects/seqres -odi -od seqres.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd seqres.dump \ + +datatool: 2.20.1 +make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqres' +/usr/bin/make -w -j21 --jobserver-auth=12,14 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=seqtable MODULE_PATH=objects/seqtable MODULE_ASN=seqtable.asn MODULE_IMPORT='objects/general/general objects/seq/seq objects/seqloc/seqloc' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn' IMPFILES='objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src +make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqtable' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ + -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m seqtable.asn -M "objects/general/general.asn objects/seq/seq.asn objects/seqloc/seqloc.asn" -oA \ + -oc seqtable -or objects/seqtable -odi -od seqtable.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd seqtable.dump \ + +datatool: 2.20.1 +make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqtable' +make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seq' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seq' +cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq && /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/new_module.sh seq all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make -w -j21 --jobserver-auth=7,8 -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/Makefile.module MODULE=seq MODULE_PATH=objects/seq MODULE_ASN=seq.asn MODULE_IMPORT='objects/general/general objects/biblio/biblio objects/pub/pub objects/medline/medline objects/seqloc/seqloc objects/seqblock/seqblock objects/seqalign/seqalign objects/seqfeat/seqfeat objects/seqres/seqres objects/seqtable/seqtable' IMPDEPS='/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/biblio.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pub/pub.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medline/medline.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqloc/seqloc.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqblock/seqblock.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqalign/seqalign.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqfeat/seqfeat.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqres/seqres.asn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqtable/seqtable.asn' IMPFILES='objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn' top_srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ builddir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build DATATOOL=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/datatool -oR /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++ \ + -opm /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src -m seq.asn -M "objects/general/general.asn objects/biblio/biblio.asn objects/pub/pub.asn objects/medline/medline.asn objects/seqloc/seqloc.asn objects/seqblock/seqblock.asn objects/seqalign/seqalign.asn objects/seqfeat/seqfeat.asn objects/seqres/seqres.asn objects/seqtable/seqtable.asn" -oA \ + -oc seq -or objects/seq -odi -od seq.def -oex '' \ + -ocvs -pch 'ncbi_pch.hpp' -fd seq.dump \ + +datatool: 2.20.1 +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seq' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seq' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seq' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seq' +/usr/bin/make[4] (Makefile.seq.lib): Nothing to be done for `export-headers'. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml2/BlastOutput2_.cpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml2/blastxml2___.cpp:2: @@ -20868,8 +20852,8 @@ 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml/BlastOutput_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml/blastxml___.cpp:2: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/Date_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general___.cpp:2: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -20896,8 +20880,8 @@ 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/Date_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general___.cpp:2: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml/BlastOutput_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml/blastxml___.cpp:2: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -20909,125 +20893,177 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqcode' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqcode/seqcode__.cpp -o seqcode__.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqcode/seqcode___.cpp -o seqcode___.o +/bin/rm -f libseqcode.so .libseqcode.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libseqcode.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC seqcode__.o seqcode___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxser -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqcode.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libseqcode.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libseqcode.so +/bin/ln -f .seqcode.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.seqcode.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqcode' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqcode' +cd objtools/eutils/egquery/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=egquery UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/egquery' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/egquery' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/egquery/egquery__.cpp -o egquery__.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/egquery/egquery___.cpp -o egquery___.o -/bin/rm -f libegquery.so .libegquery.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libegquery.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC egquery__.o egquery___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libegquery.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libegquery.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libegquery.so -/bin/ln -f .egquery.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.egquery.dep +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/egquery' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/egquery' -cd objtools/eutils/einfo/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=einfo UNIX_PROJ="" sources= configurables=configurables.null +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/egquery' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/egquery' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/egquery TMPL=egquery -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml/blastxml__.cpp -o blastxml__.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml/blastxml___.cpp -o blastxml___.o +/bin/rm -f libblastxml.so .libblastxml.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libblastxml.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC blastxml__.o blastxml___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxser -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libblastxml.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libblastxml.so +/bin/ln -f .blastxml.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.blastxml.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/elink' +cd objtools/eutils/elink/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=elink UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/epost' +cd objtools/eutils/epost/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=epost UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/ehistory' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/elink' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd objtools/eutils/ehistory/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ehistory UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/einfo' +cd objtools/eutils/einfo/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=einfo UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/epost' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esearch' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/espell' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medlars' +cd objects/entrez2/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=entrez2 UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/ehistory' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd objtools/eutils/esearch/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=esearch UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esummary' +cd objtools/eutils/espell/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=espell UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/uilist' +cd objtools/eutils/esummary/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=esummary UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/einfo' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/einfo' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/einfo' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/einfo' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/einfo' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/einfo TMPL=einfo -w -j11 --jobserver-auth=7,8 all -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/ehistory/EHistoryItem_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/ehistory/ehistory___.cpp:2: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:36: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pubmed' -cd objtools/eutils/elink/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=elink UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medlars' -cd objects/entrez2/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=entrez2 UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon3' -cd objtools/eutils/epost/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=epost UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/elink' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -cd objtools/eutils/esearch/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=esearch UNIX_PROJ="" sources= configurables=configurables.null +cd objtools/eutils/uilist/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=uilist UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/epost' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/gbseq' +cd objects/gbseq/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=gbseq UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esearch' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/valid' -cd objtools/eutils/espell/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=espell UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j21 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/espell' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esummary' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon3' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/valid' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/uilist' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/gbseq' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/ehistory' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/elink' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/ehistory' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/epost' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/ehistory' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/elink' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/einfo' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/epost' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esearch' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/ehistory' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/elink' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/einfo' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/epost' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esearch' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/elink' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/einfo' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/espell' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esummary' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/epost' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esearch' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esearch' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/gbseq' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esearch' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/einfo' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/gbseq' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esearch' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/epost TMPL=epost -w -j11 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/entrez2 TMPL=entrez2 -w -j11 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/elink TMPL=elink -w -j11 --jobserver-auth=7,8 all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/espell' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/espell' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/espell' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/uilist' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/espell' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esearch TMPL=esearch -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/espell TMPL=espell -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqcode' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqcode/seqcode__.cpp -o seqcode__.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqcode/seqcode___.cpp -o seqcode___.o -/bin/rm -f libseqcode.so .libseqcode.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libseqcode.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC seqcode__.o seqcode___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxser -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqcode.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libseqcode.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libseqcode.so -/bin/ln -f .seqcode.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.seqcode.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqcode' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqcode' -cd objtools/eutils/esummary/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=esummary UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esummary' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esummary' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esummary' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/gbseq' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/espell' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esummary' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/ehistory TMPL=ehistory -w -j21 --jobserver-auth=7,8 all +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/uilist' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/gbseq' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/uilist' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/espell' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esummary' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esummary TMPL=esummary -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/elink TMPL=elink -w -j21 --jobserver-auth=7,8 all +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/uilist' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/epost TMPL=epost -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esearch TMPL=esearch -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/entrez2 TMPL=entrez2 -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/einfo TMPL=einfo -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esummary TMPL=esummary -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/espell TMPL=espell -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/gbseq TMPL=gbseq -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/uilist TMPL=uilist -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seq' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml2' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml2/blastxml2__.cpp -o blastxml2__.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml2/blastxml2___.cpp -o blastxml2___.o +/bin/rm -f libblastxml2.so .libblastxml2.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libblastxml2.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC blastxml2__.o blastxml2___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxser -lxutil -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml2.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libblastxml2.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libblastxml2.so +/bin/ln -f .blastxml2.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.blastxml2.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml2' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml2' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/entrez2/E2Reply_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/entrez2/entrez2___.cpp:2: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/egquery/EGQueryResult_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/egquery/egquery___.cpp:2: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -21039,29 +21075,9 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/ehistory' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/ehistory/ehistory__.cpp -o ehistory__.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/ehistory/ehistory___.cpp -o ehistory___.o -/bin/rm -f libehistory.so .libehistory.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libehistory.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC ehistory__.o ehistory___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libehistory.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libehistory.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libehistory.so -/bin/ln -f .ehistory.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.ehistory.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/ehistory' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/ehistory' -cd objtools/eutils/uilist/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=uilist UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/uilist' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/uilist' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/uilist' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/uilist' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/uilist' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/uilist TMPL=uilist -w -j11 --jobserver-auth=7,8 all In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esearch/ESearchResult_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esearch/esearch___.cpp:2: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/einfo/DbInfo_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/einfo/einfo___.cpp:2: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -21073,10 +21089,9 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[5]: warning: -j11 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/epost/EPostResult_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/epost/epost___.cpp:2: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/ehistory/EHistoryItem_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/ehistory/ehistory___.cpp:2: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -21089,8 +21104,8 @@ 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/espell/ESpellResult_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/espell/espell___.cpp:2: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esearch/ESearchResult_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esearch/esearch___.cpp:2: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -21102,30 +21117,9 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml/blastxml__.cpp -o blastxml__.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml/blastxml___.cpp -o blastxml___.o -/bin/rm -f libblastxml.so .libblastxml.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libblastxml.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC blastxml__.o blastxml___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxser -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libblastxml.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libblastxml.so -/bin/ln -f .blastxml.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.blastxml.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml' -cd objects/gbseq/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=gbseq UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/gbseq' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/gbseq' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/gbseq' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/gbseq' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/gbseq' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/gbseq TMPL=gbseq -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/einfo/DbInfo_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/einfo/einfo___.cpp:2: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/espell/ESpellResult_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/espell/espell___.cpp:2: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -21152,8 +21146,8 @@ 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esummary/DocSum_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esummary/esummary___.cpp:2: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/entrez2/E2Reply_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/entrez2/entrez2___.cpp:2: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -21165,39 +21159,9 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/espell' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/espell/espell__.cpp -o espell__.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/espell/espell___.cpp -o espell___.o -/bin/rm -f libespell.so .libespell.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libespell.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC espell__.o espell___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libespell.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libespell.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libespell.so -/bin/ln -f .espell.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.espell.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/espell' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/espell' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/epost' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/epost/epost__.cpp -o epost__.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/epost/epost___.cpp -o epost___.o -/bin/rm -f libepost.so .libepost.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libepost.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC epost__.o epost___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libepost.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libepost.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libepost.so -/bin/ln -f .epost.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.epost.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/epost' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/epost' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml2' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml2/blastxml2__.cpp -o blastxml2__.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastxml2/blastxml2___.cpp -o blastxml2___.o -/bin/rm -f libblastxml2.so .libblastxml2.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libblastxml2.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC blastxml2__.o blastxml2___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxser -lxutil -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastxml2.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libblastxml2.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libblastxml2.so -/bin/ln -f .blastxml2.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.blastxml2.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml2' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml2' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/uilist/IdList_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/uilist/uilist___.cpp:2: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/epost/EPostResult_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/epost/epost___.cpp:2: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -21209,16 +21173,6 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/einfo' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/einfo/einfo__.cpp -o einfo__.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/einfo/einfo___.cpp -o einfo___.o -/bin/rm -f libeinfo.so .libeinfo.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libeinfo.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC einfo__.o einfo___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libeinfo.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libeinfo.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libeinfo.so -/bin/ln -f .einfo.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.einfo.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/einfo' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/einfo' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/gbseq/GBAltSeqData_.cpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/gbseq/gbseq___.cpp:2: @@ -21233,16 +21187,64 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esearch' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esearch/esearch__.cpp -o esearch__.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esearch/esearch___.cpp -o esearch___.o -/bin/rm -f libesearch.so .libesearch.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libesearch.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC esearch__.o esearch___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libesearch.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libesearch.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libesearch.so -/bin/ln -f .esearch.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.esearch.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esearch' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esearch' +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esummary/DocSum_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esummary/esummary___.cpp:2: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:36: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/uilist/IdList_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/uilist/uilist___.cpp:2: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:36: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/egquery' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/egquery/egquery__.cpp -o egquery__.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/egquery/egquery___.cpp -o egquery___.o +/bin/rm -f libegquery.so .libegquery.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libegquery.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC egquery__.o egquery___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libegquery.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libegquery.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libegquery.so +/bin/ln -f .egquery.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.egquery.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/egquery' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/egquery' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/espell' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/espell/espell__.cpp -o espell__.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/espell/espell___.cpp -o espell___.o +/bin/rm -f libespell.so .libespell.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libespell.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC espell__.o espell___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libespell.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libespell.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libespell.so +/bin/ln -f .espell.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.espell.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/espell' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/espell' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/ehistory' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/ehistory/ehistory__.cpp -o ehistory__.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/ehistory/ehistory___.cpp -o ehistory___.o +/bin/rm -f libehistory.so .libehistory.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libehistory.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC ehistory__.o ehistory___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libehistory.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libehistory.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libehistory.so +/bin/ln -f .ehistory.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.ehistory.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/ehistory' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/ehistory' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/uilist' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/uilist/uilist__.cpp -o uilist__.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/uilist/uilist___.cpp -o uilist___.o @@ -21253,6 +21255,26 @@ /bin/ln -f .uilist.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.uilist.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/uilist' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/uilist' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/epost' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/epost/epost__.cpp -o epost__.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/epost/epost___.cpp -o epost___.o +/bin/rm -f libepost.so .libepost.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libepost.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC epost__.o epost___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libepost.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libepost.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libepost.so +/bin/ln -f .epost.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.epost.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/epost' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/epost' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/einfo' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/einfo/einfo__.cpp -o einfo__.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/einfo/einfo___.cpp -o einfo___.o +/bin/rm -f libeinfo.so .libeinfo.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libeinfo.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC einfo__.o einfo___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libeinfo.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libeinfo.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libeinfo.so +/bin/ln -f .einfo.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.einfo.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/einfo' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/einfo' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esummary' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esummary/esummary__.cpp -o esummary__.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esummary/esummary___.cpp -o esummary___.o @@ -21263,6 +21285,49 @@ /bin/ln -f .esummary.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.esummary.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esummary' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esummary' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esearch' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esearch/esearch__.cpp -o esearch__.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/esearch/esearch___.cpp -o esearch___.o +/bin/rm -f libesearch.so .libesearch.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libesearch.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC esearch__.o esearch___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libesearch.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libesearch.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libesearch.so +/bin/ln -f .esearch.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.esearch.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esearch' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esearch' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/general' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general__.cpp -o general__.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general___.cpp -o general___.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/uoconv.cpp -o uoconv.o +/bin/rm -f libgeneral.so .libgeneral.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libgeneral.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC general__.o general___.o uoconv.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxser -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgeneral.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libgeneral.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libgeneral.so +/bin/ln -f .general.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.general.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/general' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/general' +cd objects/biblio/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=biblio UNIX_PROJ="" sources= configurables=configurables.null +cd objects/valid/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=valid UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/biblio' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/valid' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/biblio' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/valid' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/biblio' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/valid' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/biblio' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/valid' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/biblio' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/valid' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio TMPL=biblio -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/valid TMPL=valid -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/entrez2/entrez2__.cpp -o entrez2__.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/entrez2/entrez2___.cpp -o entrez2___.o @@ -21273,17 +21338,80 @@ /bin/ln -f .entrez2.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.entrez2.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' -cd objects/entrez2/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=entrez2cli UNIX_PROJ="" sources= configurables=configurables.null +cd objects/entrez2/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=entrez2cli UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/entrez2 TMPL=entrez2cli -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/entrez2 TMPL=entrez2cli -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/Affil_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/biblio___.cpp:2: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:36: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/valid/Comment_rule_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/valid/valid___.cpp:2: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:36: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/gbseq' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/gbseq/gbseq__.cpp -o gbseq__.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/gbseq/gbseq___.cpp -o gbseq___.o +/bin/rm -f libgbseq.so .libgbseq.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libgbseq.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC gbseq__.o gbseq___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxser -lxutil -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbseq.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libgbseq.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libgbseq.so +/bin/ln -f .gbseq.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.gbseq.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/gbseq' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/gbseq' +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/valid/Comment_set.cpp:49, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/valid/valid__.cpp:3: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/util/error_codes.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/util/static_set.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/valid/Comment_rule.cpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/valid/valid__.cpp:2: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/valid/Comment_set.cpp: In function 'void ncbi::objects::s_InitializeStructuredCommentRules()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/valid/Comment_set.cpp:118:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 118 | auto_ptr in; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/elink' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/elink/elink__.cpp -o elink__.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/elink/elink___.cpp -o elink___.o @@ -21294,17 +21422,17 @@ /bin/ln -f .elink.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.elink.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/elink' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/elink' -cd objtools/eutils/api/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=eutils UNIX_PROJ="" sources= configurables=configurables.null +cd objtools/eutils/api/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=eutils UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/api' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api TMPL=eutils -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api TMPL=eutils -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/api' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/eutils.cpp -o eutils.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/efetch.cpp -o efetch.o @@ -21312,40 +21440,7 @@ /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/esearch.cpp -o esearch.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/egquery.cpp -o egquery.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/epost.cpp -o epost.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUGmake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/general' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general__.cpp -o general__.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/general___.cpp -o general___.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/general/uoconv.cpp -o uoconv.o -/bin/rm -f libgeneral.so .libgeneral.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libgeneral.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC general__.o general___.o uoconv.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxser -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgeneral.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libgeneral.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libgeneral.so -/bin/ln -f .general.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.general.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/general' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/general' -cd objects/biblio/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=biblio UNIX_PROJ="" sources= configurables=configurables.null -cd objects/valid/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=valid UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/biblio' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/valid' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/biblio' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/biblio' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/valid' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/valid' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/biblio' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/biblio' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/valid' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/valid' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio TMPL=biblio -w -j11 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/valid TMPL=valid -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUGIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/entrez2/entrez2_client_.cpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; @@ -21358,31 +21453,8 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/gbseq' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/gbseq/gbseq__.cpp -o gbseq__.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/gbseq/gbseq___.cpp -o gbseq___.o -/bin/rm -f libgbseq.so .libgbseq.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libgbseq.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC gbseq__.o gbseq___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxser -lxutil -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgbseq.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libgbseq.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libgbseq.so -/bin/ln -f .gbseq.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.gbseq.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/gbseq' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/gbseq' -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/elink.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/elink.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/eutils.hpp:198:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 198 | auto_ptr m_Stream; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/elink.hpp:36: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/egquery.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/egquery.cpp:34: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/ehistory.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/ehistory.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/eutils.hpp:198:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 198 | auto_ptr m_Stream; | ^~~~~~~~ @@ -21390,12 +21462,12 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/egquery.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/ehistory.hpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/esummary.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/esummary.cpp:34: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/espell.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/espell.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/eutils.hpp:198:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 198 | auto_ptr m_Stream; | ^~~~~~~~ @@ -21403,7 +21475,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/esummary.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/espell.hpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -21420,8 +21492,8 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/efetch.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/efetch.cpp:34: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/esummary.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/esummary.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/eutils.hpp:198:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 198 | auto_ptr m_Stream; | ^~~~~~~~ @@ -21429,15 +21501,12 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/efetch.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/esummary.hpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/efetch.cpp: In member function 'virtual ncbi::CRef ncbi::CEFetch_Request::FetchIdList(int)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/efetch.cpp:132:12: warning: catching polymorphic type 'class ncbi::CSerialException' by value [-Wcatch-value=] - 132 | catch (CSerialException) { - | ^~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/eutils.cpp:34: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/einfo.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/einfo.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/eutils.hpp:198:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 198 | auto_ptr m_Stream; | ^~~~~~~~ @@ -21445,7 +21514,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/eutils.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/einfo.hpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -21462,8 +21531,8 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/ehistory.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/ehistory.cpp:34: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/elink.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/elink.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/eutils.hpp:198:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 198 | auto_ptr m_Stream; | ^~~~~~~~ @@ -21471,12 +21540,12 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/ehistory.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/elink.hpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/espell.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/espell.cpp:34: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/egquery.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/egquery.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/eutils.hpp:198:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 198 | auto_ptr m_Stream; | ^~~~~~~~ @@ -21484,51 +21553,11 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/espell.hpp:36: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/valid/Comment_set.cpp:49, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/valid/valid__.cpp:3: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/util/error_codes.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/util/static_set.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/valid/Comment_rule.cpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/valid/valid__.cpp:2: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/Affil_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/biblio/biblio___.cpp:2: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:36: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/valid/Comment_set.cpp: In function 'void ncbi::objects::s_InitializeStructuredCommentRules()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/valid/Comment_set.cpp:118:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 118 | auto_ptr in; - | ^~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/egquery.hpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/einfo.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/einfo.cpp:34: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/eutils.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/eutils.hpp:198:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 198 | auto_ptr m_Stream; | ^~~~~~~~ @@ -21536,24 +21565,27 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/einfo.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/eutils.hpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/valid/Comment_rule_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/valid/valid___.cpp:2: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/efetch.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/efetch.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/eutils.hpp:198:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 198 | auto_ptr m_Stream; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/efetch.hpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/efetch.cpp: In member function 'virtual ncbi::CRef ncbi::CEFetch_Request::FetchIdList(int)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/efetch.cpp:132:12: warning: catching polymorphic type 'class ncbi::CSerialException' by value [-Wcatch-value=] + 132 | catch (CSerialException) { + | ^~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/entrez2/entrez2_client.cpp -o entrez2_client.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/entrez2/entrez2_client_.cpp -o entrez2_client_.o @@ -21564,17 +21596,6 @@ /bin/ln -f .entrez2cli.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.entrez2cli.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' - -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/elink.cpp -o elink.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/esummary.cpp -o esummary.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/espell.cpp -o espell.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/ehistory.cpp -o ehistory.o -/bin/rm -f libeutils.so .libeutils.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libeutils.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC eutils.o efetch.o einfo.o esearch.o egquery.o epost.o elink.o esummary.o espell.o ehistory.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -leinfo -lesearch -legquery -lepost -lelink -lesummary -lespell -luilist -lehistory -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libeutils.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libeutils.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libeutils.so -/bin/ln -f .eutils.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.eutils.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/valid' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/valid/valid__.cpp -o valid__.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/valid/valid___.cpp -o valid___.o @@ -21596,31 +21617,42 @@ /bin/ln -f .biblio.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.biblio.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/biblio' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/biblio' -cd objects/medline/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=medline UNIX_PROJ="" sources= configurables=configurables.null -cd objects/medlars/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=medlars UNIX_PROJ="" sources= configurables=configurables.null +cd objects/medline/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=medline UNIX_PROJ="" sources= configurables=configurables.null +cd objects/medlars/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=medlars UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medline' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medlars' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medline' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medlars' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medline' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medlars' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medline' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medlars' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medline' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medlars' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medline TMPL=medline -w -j11 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medlars TMPL=medlars -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medline TMPL=medline -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medlars TMPL=medlars -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. + -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/elink.cpp -o elink.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/esummary.cpp -o esummary.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/espell.cpp -o espell.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/eutils/api/ehistory.cpp -o ehistory.o +/bin/rm -f libeutils.so .libeutils.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libeutils.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC eutils.o efetch.o einfo.o esearch.o egquery.o epost.o elink.o esummary.o espell.o ehistory.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -leinfo -lesearch -legquery -lepost -lelink -lesummary -lespell -luilist -lehistory -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libeutils.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libeutils.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libeutils.so +/bin/ln -f .eutils.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.eutils.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/api' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medline/DocRef_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medline/medline___.cpp:2: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medlars/Medlars_entry_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medlars/medlars___.cpp:2: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -21633,8 +21665,8 @@ 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medlars/Medlars_entry_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medlars/medlars___.cpp:2: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medline/DocRef_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/medline/medline___.cpp:2: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -21666,31 +21698,31 @@ /bin/ln -f .medline.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.medline.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medline' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medline' -cd objects/pub/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=pub UNIX_PROJ="" sources= configurables=configurables.null -cd objects/pubmed/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=pubmed UNIX_PROJ="" sources= configurables=configurables.null +cd objects/pub/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=pub UNIX_PROJ="" sources= configurables=configurables.null +cd objects/pubmed/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=pubmed UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pub' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pubmed' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pub' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pubmed' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pub' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pubmed' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pub' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pubmed' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pub' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pubmed' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pub TMPL=pub -w -j11 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pubmed TMPL=pubmed -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pub TMPL=pub -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pubmed TMPL=pubmed -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pubmed/Pubmed_entry_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pubmed/pubmed___.cpp:2: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pub/Pub_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pub/pub___.cpp:2: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -21703,8 +21735,8 @@ 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pub/Pub_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pub/pub___.cpp:2: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pubmed/Pubmed_entry_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/pubmed/pubmed___.cpp:2: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -21736,38 +21768,55 @@ /bin/ln -f .pub.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.pub.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pub' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pub' -cd objects/seq/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seq UNIX_PROJ="" sources= configurables=configurables.null -cd objects/mla/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=mla UNIX_PROJ="" sources= configurables=configurables.null +cd objects/seq/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seq UNIX_PROJ="" sources= configurables=configurables.null +cd objects/mla/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=mla UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seq' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seq' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seq' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seq' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seq' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/mla TMPL=mla -w -j11 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq TMPL=seq -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/mla TMPL=mla -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq TMPL=seq -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seq' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq__.cpp -o seq__.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include seqalign__.cpp -o seqalign__.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include seqblock__.cpp -o seqblock__.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include seqfeat__.cpp -o seqfeat__.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include seqloc__.cpp -o seqloc__.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FOIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/BinomialOrgName_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/seqfeat___.cpp:2, - from seqfeat___.cpp:1: +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include seqres__.cpp -o seqres__.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include seqtable__.cpp -o seqtable__.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq___.cpp -o seq___.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include seqalign___.cpp -o seqalign___.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include seqblock___.cpp -o seqblock___.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include seqfeat___.cpp -o seqfeat___.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include seqloc___.cpp -o seqloc___.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include seqres___.cpp -o seqres___.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include seqtable___.cpp -o seqtable___.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seqport_util.cpp -o seqport_util.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_id_tree.cpp -o seq_id_tree.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_id_handle.cpp -o seq_id_handle.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_id_mapper.cpp -o seq_id_mapper.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_loc_mapper_base.cpp -o seq_loc_mapper_base.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_align_mapper_base.cpp -o seq_align_mapper_base.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seqlocinfo.cpp -o seqlocinfo.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/so_map.cpp -o so_map.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/obIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqtable/BVector_data_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqtable/seqtable___.cpp:2, + from seqtable___.cpp:1: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -21779,16 +21828,10 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -RTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include seqres__.cpp -o seqres__.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include seqtable__.cpp -o seqtable__.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq___.cpp -o seq___.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include seqalign___.cpp -o seqalign___.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include seqblock___.cpp -o seqblock___.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include seqfeat___.cpp -o seqfeat___.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqalign/Dense_diag_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqalign/seqalign___.cpp:2, - from seqalign___.cpp:1: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqblock/EMBL_block_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqblock/seqblock___.cpp:2, + from seqblock___.cpp:1: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -21801,9 +21844,9 @@ 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqblock/EMBL_block_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqblock/seqblock___.cpp:2, - from seqblock___.cpp:1: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/BinomialOrgName_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/seqfeat___.cpp:2, + from seqfeat___.cpp:1: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -21816,8 +21859,9 @@ 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/mla/Error_val_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/mla/mla___.cpp:2: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqloc/Giimport_id_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqloc/seqloc___.cpp:2, + from seqloc___.cpp:1: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -21829,9 +21873,20 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seqport_util.cpp: In member function 'ncbi::CRef ncbi::objects::CSeqportUtil_implementation::Init()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seqport_util.cpp:1307:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1307 | auto_ptr + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/seqport_util.hpp:34, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seqport_util.cpp:33: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/Align_def_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq___.cpp:2: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/mla/Error_val_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/mla/mla___.cpp:2: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -21843,6 +21898,13 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seqport_util.cpp: In member function 'ncbi::TSeqPos ncbi::objects::CSeqportUtil_implementation::MapIupacnaToNcbi2na(const ncbi::objects::CSeq_data&, ncbi::objects::CSeq_data*, ncbi::TSeqPos, ncbi::TSeqPos, bool, ncbi::CRandom::TValue, ncbi::TSeqPos, ncbi::TSeqPos*, std::vector*) const': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seqport_util.cpp:2923:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2923 | auto_ptr amb_context(NULL); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqloc/Seq_id.cpp:47, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqloc/seqloc__.cpp:10, @@ -21862,25 +21924,86 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seqport_util.cpp: In member function 'ncbi::TSeqPos ncbi::objects::CSeqportUtil_implementation::MapNcbi4naToNcbi2na(const ncbi::objects::CSeq_data&, ncbi::objects::CSeq_data*, ncbi::TSeqPos, ncbi::TSeqPos, bool, ncbi::CRandom::TValue, ncbi::TSeqPos, ncbi::TSeqPos*, std::vector*) const': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seqport_util.cpp:3228:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3228 | auto_ptr amb_context(NULL); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:15, - from seqfeat__.cpp:1: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqalign/Dense_diag_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqalign/seqalign___.cpp:2, + from seqalign___.cpp:1: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:36: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_align_mapper_base.cpp: In member function 'void ncbi::objects::CSeq_align_Mapper_Base::x_GetDstStd(ncbi::CRef&) const': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_align_mapper_base.cpp:1505:32: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] + 1505 | if ( row_n == p_row ) { + | ~~~~~~^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqres/Byte_graph_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqres/seqres___.cpp:2, + from seqres___.cpp:1: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:36: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_align_mapper_base.cpp: In member function 'void ncbi::objects::CSeq_align_Mapper_Base::x_GetDstDisc(ncbi::CRef&) const': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_align_mapper_base.cpp:1651:16: warning: catching polymorphic type 'class ncbi::objects::CAnnotMapperException' by value [-Wcatch-value=] + 1651 | catch (CAnnotMapperException) { + | ^~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/Align_def_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq___.cpp:2: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:36: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_align_mapper_base.cpp: In member function 'virtual ncbi::objects::CSeq_align_Mapper_Base* ncbi::objects::CSeq_align_Mapper_Base::CreateSubAlign(const ncbi::objects::CSpliced_seg&, const ncbi::objects::CSpliced_exon&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_align_mapper_base.cpp:3064:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3064 | auto_ptr sub( + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/seq_id_handle.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/seq_align_mapper_base.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_align_mapper_base.cpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_id_tree.cpp: In member function 'virtual void ncbi::objects::CSeq_id_Giim_Tree::FindMatchStr(const std::string&, ncbi::objects::CSeq_id_Which_Tree::TSeq_id_MatchList&) const': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_id_tree.cpp:2871:12: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] + 2871 | catch (CStringException) { + | ^~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqalign/seqalign__.cpp:9, from seqalign__.cpp:1: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqalign/Seq_align.cpp: In member function 'void ncbi::objects::CSeq_align::RemapToLoc(ncbi::objects::CSeq_align_Base::TDim, const ncbi::objects::CSeq_loc&, bool)': @@ -21904,6 +22027,25 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqalign/Seq_align.cpp:1365:6: note: declared here 1365 | void CSeq_align::RemapToLoc(TDim row, | ^~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/Gb_qual.cpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:15, + from seqfeat__.cpp:1: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqfeat/BinomialOrgName_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqfeat/BinomialOrgName.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/BinomialOrgName.cpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:2: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:19: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/Genetic_code_table.cpp: In static member function 'static void ncbi::objects::CGen_code_table::LoadTransTable(const std::string&, ncbi::ESerialDataFormat)': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/Genetic_code_table.cpp:379:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] @@ -21982,26 +22124,34 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:5344:11: note: declared here 5344 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, | ^~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqloc/Giimport_id_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqloc/seqloc___.cpp:2, - from seqloc___.cpp:1: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:42: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/RNA_ref.cpp: In function 'ncbi::CTempString ncbi::objects::s_AaName(int)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/RNA_ref.cpp:124:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'unsigned int'} [-Wsign-compare] + 124 | if (idx > 0 && idx < ArraySize(sc_TrnaList)) { + | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_loc_reverse_complementer.cpp: In function 'ncbi::objects::CSeq_interval* ncbi::objects::s_SeqIntRevCmp(const CSeq_interval&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_loc_reverse_complementer.cpp:60:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 60 | auto_ptr rev_int(new CSeq_interval); + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_loc_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_loc.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/seq_loc_reverse_complementer.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_loc_reverse_complementer.cpp:35: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_loc_reverse_complementer.cpp: In function 'ncbi::objects::CSeq_point* ncbi::objects::s_SeqPntRevCmp(const CSeq_point&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_loc_reverse_complementer.cpp:72:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 72 | auto_ptr rev_pnt(new CSeq_point); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:42: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/RNA_ref.cpp: In function 'ncbi::CTempString ncbi::objects::s_AaName(int)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/RNA_ref.cpp:124:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'unsigned int'} [-Wsign-compare] - 124 | if (idx > 0 && idx < ArraySize(sc_TrnaList)) { - | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/mla/mla__.cpp -o mla__.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/mla/mla___.cpp -o mla___.o @@ -22011,18 +22161,25 @@ /bin/ln -f libmla.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libmla.so /bin/ln -f .mla.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.mla.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_loc_reverse_complementer.cpp: In function 'ncbi::objects::CSeq_loc* ncbi::objects::GetReverseComplement(const CSeq_loc&, CReverseComplementHelper*)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_loc_reverse_complementer.cpp:86:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 86 | auto_ptr rev_loc( new CSeq_loc ); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' -cd objects/mla/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=mlacli UNIX_PROJ="" sources= configurables=configurables.null +cd objects/mla/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=mlacli UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/mla TMPL=mlacli -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/mla TMPL=mlacli -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:44: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/SeqFeatData.cpp: In static member function 'static const ncbi::objects::CFeatList* ncbi::objects::CSeqFeatData::GetFeatList()': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/SeqFeatData.cpp:3752:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] @@ -22045,21 +22202,6 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqres/Byte_graph_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqres/seqres___.cpp:2, - from seqres___.cpp:1: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:36: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/seqfeat__.cpp:48: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/SubSource.cpp: In static member function 'static void ncbi::objects::CSubSource::IsCorrectDateFormat(const std::string&, bool&, bool&)': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqfeat/SubSource.cpp:464:14: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] @@ -22104,21 +22246,6 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqtable/BVector_data_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/../seqtable/seqtable___.cpp:2, - from seqtable___.cpp:1: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:36: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/mla/mla_client.cpp -o mla_client.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/mla/mla_client_.cpp -o mla_client_.o @@ -22129,101 +22256,6 @@ /bin/ln -f .mlacli.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.mlacli.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seqport_util.cpp: In member function 'ncbi::CRef ncbi::objects::CSeqportUtil_implementation::Init()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seqport_util.cpp:1307:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1307 | auto_ptr - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/seqport_util.hpp:34, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seqport_util.cpp:33: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seqport_util.cpp: In member function 'ncbi::TSeqPos ncbi::objects::CSeqportUtil_implementation::MapIupacnaToNcbi2na(const ncbi::objects::CSeq_data&, ncbi::objects::CSeq_data*, ncbi::TSeqPos, ncbi::TSeqPos, bool, ncbi::CRandom::TValue, ncbi::TSeqPos, ncbi::TSeqPos*, std::vector*) const': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seqport_util.cpp:2923:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2923 | auto_ptr amb_context(NULL); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seqport_util.cpp: In member function 'ncbi::TSeqPos ncbi::objects::CSeqportUtil_implementation::MapNcbi4naToNcbi2na(const ncbi::objects::CSeq_data&, ncbi::objects::CSeq_data*, ncbi::TSeqPos, ncbi::TSeqPos, bool, ncbi::CRandom::TValue, ncbi::TSeqPos, ncbi::TSeqPos*, std::vector*) const': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seqport_util.cpp:3228:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3228 | auto_ptr amb_context(NULL); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_id_tree.cpp: In member function 'virtual void ncbi::objects::CSeq_id_Giim_Tree::FindMatchStr(const std::string&, ncbi::objects::CSeq_id_Which_Tree::TSeq_id_MatchList&) const': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_id_tree.cpp:2871:12: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] - 2871 | catch (CStringException) { - | ^~~~~~~~~~~~~~~~ -/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include seqloc___.cpp -o seqloc___.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include seqres___.cpp -o seqres___.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include seqtable___.cpp -o seqtable___.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seqport_util.cpp -o seqport_util.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_id_tree.cpp -o seq_id_tree.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_id_handle.cpp -o seq_id_handle.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_align_mapper_base.cpp: In member function 'void ncbi::objects::CSeq_align_Mapper_Base::x_GetDstStd(ncbi::CRef&) const': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_align_mapper_base.cpp:1505:32: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] - 1505 | if ( row_n == p_row ) { - | ~~~~~~^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_align_mapper_base.cpp: In member function 'void ncbi::objects::CSeq_align_Mapper_Base::x_GetDstDisc(ncbi::CRef&) const': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_align_mapper_base.cpp:1651:16: warning: catching polymorphic type 'class ncbi::objects::CAnnotMapperException' by value [-Wcatch-value=] - 1651 | catch (CAnnotMapperException) { - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_align_mapper_base.cpp: In member function 'virtual ncbi::objects::CSeq_align_Mapper_Base* ncbi::objects::CSeq_align_Mapper_Base::CreateSubAlign(const ncbi::objects::CSpliced_seg&, const ncbi::objects::CSpliced_exon&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_align_mapper_base.cpp:3064:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3064 | auto_ptr sub( - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/seq_id_handle.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/seq_align_mapper_base.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_align_mapper_base.cpp:34: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ --path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_id_mapper.cpp -o seq_id_mapper.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_loc_mapper_base.cpp -o seq_loc_mapper_base.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_align_mapper_base.cpp -o seq_align_mapper_base.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seqlocinfo.cpp -o seqlocinfo.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/so_map.cpp -o so_map.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/ob/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_loc_reverse_complementer.cpp: In function 'ncbi::objects::CSeq_interval* ncbi::objects::s_SeqIntRevCmp(const CSeq_interval&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_loc_reverse_complementer.cpp:60:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 60 | auto_ptr rev_int(new CSeq_interval); - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_loc_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_loc.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/seq_loc_reverse_complementer.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_loc_reverse_complementer.cpp:35: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_loc_reverse_complementer.cpp: In function 'ncbi::objects::CSeq_point* ncbi::objects::s_SeqPntRevCmp(const CSeq_point&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_loc_reverse_complementer.cpp:72:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 72 | auto_ptr rev_pnt(new CSeq_point); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_loc_reverse_complementer.cpp: In function 'ncbi::objects::CSeq_loc* ncbi::objects::GetReverseComplement(const CSeq_loc&, CReverseComplementHelper*)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_loc_reverse_complementer.cpp:86:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 86 | auto_ptr rev_loc( new CSeq_loc ); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ jects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_loc_from_string.cpp -o seq_loc_from_string.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seq/seq_loc_reverse_complementer.cpp -o seq_loc_reverse_complementer.o /bin/rm -f libseq.so .libseq.so.stamp @@ -22233,75 +22265,75 @@ /bin/ln -f .seq.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.seq.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seq' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seq' -cd objects/seqset/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqset UNIX_PROJ="" sources= configurables=configurables.null -cd objects/blastdb/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blastdb UNIX_PROJ="" sources= configurables=configurables.null -cd objects/genomecoll/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=genome_collection UNIX_PROJ="" sources= configurables=configurables.null +cd objects/seqset/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqset UNIX_PROJ="" sources= configurables=configurables.null +cd objects/blastdb/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blastdb UNIX_PROJ="" sources= configurables=configurables.null +cd objects/genomecoll/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=genome_collection UNIX_PROJ="" sources= configurables=configurables.null +cd objects/variation/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=variation UNIX_PROJ="" sources= configurables=configurables.null +cd objects/taxon1/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=taxon1 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqset' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastdb' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -cd objects/variation/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=variation UNIX_PROJ="" sources= configurables=configurables.null -cd objects/taxon1/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=taxon1 UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd objects/taxon3/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=taxon3 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -cd objects/taxon3/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=taxon3 UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastdb' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon3' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastdb' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastdb' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastdb' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastdb' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqset' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqset' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastdb' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqset' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon3' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastdb' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqset' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastdb TMPL=blastdb -w -j11 --jobserver-auth=7,8 all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastdb' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon3' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqset' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon3' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqset' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon3' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon3' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastdb' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon3' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon1 TMPL=taxon1 -w -j11 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset TMPL=seqset -w -j11 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll TMPL=genome_collection -w -j11 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/variation TMPL=variation -w -j11 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon3 TMPL=taxon3 -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset TMPL=seqset -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastdb TMPL=blastdb -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll TMPL=genome_collection -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/variation TMPL=variation -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon1 TMPL=taxon1 -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon3 TMPL=taxon3 -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon3/SequenceOfInt_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon3/taxon3___.cpp:2: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll/GC_Assemblies_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll/genome_collection___.cpp:2: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -22313,9 +22345,32 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon3/taxon3.cpp: In member function 'virtual ncbi::CRef ncbi::objects::CTaxon3::SendRequest(const ncbi::objects::CTaxon3_request&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon3/taxon3.cpp:116:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 116 | auto_ptr pOut; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon3/taxon3.cpp:34: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon3/taxon3.cpp:117:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr pIn; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon3/taxon3.cpp:118:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 118 | auto_ptr + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset/Bioseq_set_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset/seqset___.cpp:2: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastdb/Blast_db_mask_info_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastdb/blastdb___.cpp:2: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -22328,8 +22383,8 @@ 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll/GC_Assemblies_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll/genome_collection___.cpp:2: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/variation/VariantPlacement_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/variation/variation___.cpp:2: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -22342,8 +22397,8 @@ 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastdb/Blast_db_mask_info_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blastdb/blastdb___.cpp:2: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon3/SequenceOfInt_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon3/taxon3___.cpp:2: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -22369,21 +22424,9 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset/gb_release_file.cpp:68:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 68 | auto_ptr m_In; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqset/gb_release_file.hpp:34, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset/gb_release_file.cpp:32: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/variation/VariantPlacement_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/variation/variation___.cpp:2: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset/Bioseq_set_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset/seqset___.cpp:2: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -22395,26 +22438,15 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon3/taxon3.cpp: In member function 'virtual ncbi::CRef ncbi::objects::CTaxon3::SendRequest(const ncbi::objects::CTaxon3_request&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon3/taxon3.cpp:116:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 116 | auto_ptr pOut; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset/gb_release_file.cpp:68:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 68 | auto_ptr m_In; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon3/taxon3.cpp:34: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon3/taxon3.cpp:117:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr pIn; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon3/taxon3.cpp:118:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 118 | auto_ptr - | ^~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqset/gb_release_file.hpp:34, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqset/gb_release_file.cpp:32: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -22485,61 +22517,61 @@ /bin/ln -f .seqset.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.seqset.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqset' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqset' -cd objects/scoremat/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=scoremat UNIX_PROJ="" sources= configurables=configurables.null -cd objects/seqedit/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqedit UNIX_PROJ="" sources= configurables=configurables.null +cd objects/scoremat/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=scoremat UNIX_PROJ="" sources= configurables=configurables.null +cd objects/seqedit/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqedit UNIX_PROJ="" sources= configurables=configurables.null +cd objects/seqsplit/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqsplit UNIX_PROJ="" sources= configurables=configurables.null +cd objects/submit/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=submit UNIX_PROJ="" sources= configurables=configurables.null +cd objects/id1/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=id1 UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/scoremat' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -cd objects/seqsplit/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqsplit UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqedit' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -cd objects/submit/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=submit UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j21 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqsplit' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -cd objects/id1/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=id1 UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqedit' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/submit' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqedit' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/submit' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqedit' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/scoremat' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/scoremat' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqedit' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqedit' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/submit' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqsplit' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/submit' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/submit' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/scoremat' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqedit TMPL=seqedit -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/scoremat' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/submit TMPL=submit -w -j11 --jobserver-auth=7,8 all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqsplit' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqsplit' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqsplit' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqsplit' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqsplit TMPL=seqsplit -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/scoremat TMPL=scoremat -w -j11 --jobserver-auth=7,8 all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/submit' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/scoremat' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqsplit' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/submit' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/scoremat' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqsplit' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqedit' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/submit' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqedit' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id1 TMPL=id1 -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqedit' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqedit' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/scoremat TMPL=scoremat -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqsplit TMPL=seqsplit -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/submit TMPL=submit -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id1 TMPL=id1 -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqedit TMPL=seqedit -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon3' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon3/taxon3__.cpp -o taxon3__.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon3/taxon3___.cpp -o taxon3___.o @@ -22551,6 +22583,40 @@ /bin/ln -f .taxon3.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.taxon3.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon3' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon3' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll/genome_collection__.cpp -o genome_collection__.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll/genome_collection___.cpp -o genome_collection___.o +/bin/rm -f libgenome_collection.so .libgenome_collection.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libgenome_collection.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC genome_collection__.o genome_collection___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lseq -lgeneral -lxser -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenome_collection.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libgenome_collection.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libgenome_collection.so +/bin/ln -f .genome_collection.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.genome_collection.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/variation/variation__.cpp -o variation__.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/variation/variation___.cpp -o variation___.o +/bin/rm -f libvariation.so .libvariation.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libvariation.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC variation__.o variation___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lseq -lxser -lxutil -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvariation.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libvariation.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libvariation.so +/bin/ln -f .variation.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.variation.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon1/taxon1__.cpp -o taxon1__.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon1/taxon1___.cpp -o taxon1___.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon1/taxon1.cpp -o taxon1.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon1/cache.cpp -o cache.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon1/utils.cpp -o utils.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon1/ctreecont.cpp -o ctreecont.o +/bin/rm -f libtaxon1.so .libtaxon1.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libtaxon1.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC taxon1__.o taxon1___.o taxon1.o cache.o utils.o ctreecont.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxconnect -lseq -lxser -lxutil -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon1.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libtaxon1.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libtaxon1.so +/bin/ln -f .taxon1.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.taxon1.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqedit/SeqEdit_Cmd_.cpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqedit/seqedit___.cpp:2: @@ -22566,8 +22632,8 @@ 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/submit/Contact_info_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/submit/submit___.cpp:2: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqsplit/ID2S_Bioseq_Ids_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqsplit/seqsplit___.cpp:2: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -22579,17 +22645,9 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon1/taxon1__.cpp -o taxon1__.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon1/taxon1___.cpp -o taxon1___.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon1/taxon1.cpp -o taxon1.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon1/cache.cpp -o cache.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon1/utils.cpp -o utils.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/taxon1/ctreecont.cpp -o ctreecont.o -/bin/rm -f libtaxon1.so .libtaxon1.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libtaxon1.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC taxon1__.o tIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id1/Entry_complexities_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id1/id1___.cpp:2: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/scoremat/BlockProperty_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/scoremat/scoremat___.cpp:2: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -22602,8 +22660,8 @@ 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqsplit/ID2S_Bioseq_Ids_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqsplit/seqsplit___.cpp:2: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id1/Entry_complexities_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id1/id1___.cpp:2: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -22616,8 +22674,8 @@ 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/scoremat/BlockProperty_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/scoremat/scoremat___.cpp:2: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/submit/Contact_info_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/submit/submit___.cpp:2: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ @@ -22629,32 +22687,16 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll/genome_collection__.cpp -o genome_collection__.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/genomecoll/genome_collection___.cpp -o genome_collection___.o -/bin/rm -f libgenome_collection.so .libgenome_collection.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libgenome_collection.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC genome_collection__.o genome_collection___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lseq -lgeneral -lxser -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libgenome_collection.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libgenome_collection.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libgenome_collection.so -/bin/ln -f .genome_collection.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.genome_collection.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' -axon1___.o taxon1.o cache.o utils.o ctreecont.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxconnect -lseq -lxser -lxutil -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtaxon1.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libtaxon1.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libtaxon1.so -/bin/ln -f .taxon1.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.taxon1.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/variation/variation__.cpp -o variation__.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/variation/variation___.cpp -o variation___.o -/bin/rm -f libvariation.so .libvariation.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libvariation.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC variation__.o variation___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lseq -lxser -lxutil -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvariation.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libvariation.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libvariation.so -/bin/ln -f .variation.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.variation.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id1/id1__.cpp -o id1__.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id1/id1___.cpp -o id1___.o +/bin/rm -f libid1.so .libid1.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libid1.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC id1__.o id1___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lseqset -lseq -lxser -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libid1.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libid1.so +/bin/ln -f .id1.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.id1.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/submit' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/submit/submit__.cpp -o submit__.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/submit/submit___.cpp -o submit___.o @@ -22665,17 +22707,17 @@ /bin/ln -f .submit.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.submit.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/submit' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/submit' -cd objtools/readers/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xobjread UNIX_PROJ="" sources= configurables=configurables.null +cd objtools/readers/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xobjread UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/readers' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/readers' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/readers' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/readers' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/readers' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers TMPL=xobjread -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers TMPL=xobjread -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/readers' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/reader_message.cpp -o reader_message.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/reader_listener.cpp -o reader_listener.o @@ -22683,7 +22725,19 @@ /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/read_util.cpp -o read_util.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/format_guess_ex.cpp -o format_guess_ex.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/seqid_validate.cpp -o seqid_validate.o -/usr/bin/g++ -sIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/acc_pattern.cpp -o acc_pattern.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/agp_read.cpp -o agp_read.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/agp_seq_entry.cpp -o agp_seq_entry.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/agp_util.cpp -o agp_util.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/agp_validate_reader.cpp -o agp_validate_reader.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/cigar.cpp -o cigar.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/fasta.cpp -o fasta.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_formats.cpp -o aln_formats.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/alnread.cpp -o alnread.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_errors.cpp -o aln_errors.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_error_reporter.cpp -o aln_error_reporter.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_formatguess.cpp -o aln_formatguess.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/format_guess_ex.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) @@ -22793,42 +22847,28 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id1/id1__.cpp -o id1__.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id1/id1___.cpp -o id1___.o -/bin/rm -f libid1.so .libid1.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libid1.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC id1__.o id1___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lseqset -lseq -lxser -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid1.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libid1.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libid1.so -/bin/ln -f .id1.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.id1.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/agp_util.cpp: In member function 'int ncbi::CAgpErrEx::GetCount(ncbi::CAgpErr::EErrCode) const': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/agp_util.cpp:1706:14: warning: comparison between 'enum ncbi::CAgpErr::EErrCode' and 'enum ncbi::CAgpErrEx::' [-Wenum-compare] - 1706 | if (code < CODE_Last) { - | ~~~~~^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/agp_read.cpp: In function 'ncbi::CRef ncbi::AgpRead(CNcbiIstream&, EAgpRead_IdRule, bool, std::vector >*)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/agp_read.cpp:58:12: warning: 'void ncbi::AgpRead(CNcbiIstream&, std::vector >&, EAgpRead_IdRule, bool, std::vector >*)' is deprecated [-Wdeprecated-declarations] - 58 | AgpRead(is, entries, component_id_rule, set_gap_data, component_types); - | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/agp_read.cpp:33: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/agp_read.hpp:61:6: note: declared here - 61 | void AgpRead(CNcbiIstream& is, - | ^~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/agp_read.cpp: In function 'void ncbi::AgpRead(CNcbiIstream&, std::vector >&, EAgpRead_IdRule, bool, std::vector >*)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/agp_read.cpp:74:12: warning: 'void ncbi::AgpRead(CNcbiIstream&, std::vector >&, EAgpRead_IdRule, bool, std::vector >*)' is deprecated [-Wdeprecated-declarations] - 74 | AgpRead(is, bioseqs, component_id_rule, set_gap_data, component_types); - | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/agp_read.hpp:52:6: note: declared here - 52 | void AgpRead(CNcbiIstream& is, - | ^~~~~~~ -td=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/acc_pattern.cpp -o acc_pattern.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/agp_read.cpp -o agp_read.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/agp_seq_entry.cpp -o agp_seq_entry.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/agp_util.cpp -o agp_util.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/agp_validate_reader.cpp -o agp_validate_reader.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/cigar.cpp -o cigar.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fs/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/agp_validate_reader.cpp: In member function 'virtual void ncbi::CAgpValidateReader::OnGapOrComponent()': +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/scoremat' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/scoremat/scoremat__.cpp -o scoremat__.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/scoremat/scoremat___.cpp -o scoremat___.o +/bin/rm -f libscoremat.so .libscoremat.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libscoremat.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC scoremat__.o scoremat___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lseqset -lseq -lgeneral -lxser -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libscoremat.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libscoremat.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libscoremat.so +/bin/ln -f .scoremat.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.scoremat.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/scoremat' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/scoremat' +cd objects/blast/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blast UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blast TMPL=blast -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/agp_validate_reader.cpp: In member function 'virtual void ncbi::CAgpValidateReader::OnGapOrComponent()': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/agp_validate_reader.cpp:160:20: warning: comparison of integer expressions of different signedness: 'int' and 'ncbi::TSeqPos' {aka 'unsigned int'} [-Wsign-compare] 160 | if(m_max_obj_beg < m_this_row->object_beg) m_max_obj_beg = m_this_row->object_beg; | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ @@ -22848,152 +22888,120 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/agp_validate_reader.cpp:585:28: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] 585 | catch(CException e){ | ^ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/scoremat' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/scoremat/scoremat__.cpp -o scoremat__.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/scoremat/scoremat___.cpp -o scoremat___.o -/bin/rm -f libscoremat.so .libscoremat.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libscoremat.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC scoremat__.o scoremat___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lseqset -lseq -lgeneral -lxser -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libscoremat.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libscoremat.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libscoremat.so -/bin/ln -f .scoremat.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.scoremat.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/scoremat' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/scoremat' -cd objects/blast/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blast UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blast TMPL=blast -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/agp_util.cpp: In member function 'int ncbi::CAgpErrEx::GetCount(ncbi::CAgpErr::EErrCode) const': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/agp_util.cpp:1706:14: warning: comparison between 'enum ncbi::CAgpErr::EErrCode' and 'enum ncbi::CAgpErrEx::' [-Wenum-compare] + 1706 | if (code < CODE_Last) { + | ~~~~~^~~~~~~~~~~ +_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_util.cpp -o aln_util.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_reader.cpp -o aln_reader.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner.cpp -o aln_scanner.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_fastagap.cpp -o aln_scanner_fastagap.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_clustal.cpp -o aln_scanner_clustal.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_nexus.cpp -o aln_scanner_nexus.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/seqid_validate.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_errors.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/seqid_validate.cpp:33: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/format_guess_ex.cpp:51: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/format_guess_ex.hpp:140:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 140 | auto_ptr m_Guesser; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/format_guess_ex.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_errors.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/agp_read.cpp: In function 'ncbi::CRef ncbi::AgpRead(CNcbiIstream&, EAgpRead_IdRule, bool, std::vector >*)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/agp_read.cpp:58:12: warning: 'void ncbi::AgpRead(CNcbiIstream&, std::vector >&, EAgpRead_IdRule, bool, std::vector >*)' is deprecated [-Wdeprecated-declarations] + 58 | AgpRead(is, entries, component_id_rule, set_gap_data, component_types); + | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/agp_read.cpp:33: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/agp_read.hpp:61:6: note: declared here + 61 | void AgpRead(CNcbiIstream& is, + | ^~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/agp_read.cpp: In function 'void ncbi::AgpRead(CNcbiIstream&, std::vector >&, EAgpRead_IdRule, bool, std::vector >*)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/agp_read.cpp:74:12: warning: 'void ncbi::AgpRead(CNcbiIstream&, std::vector >&, EAgpRead_IdRule, bool, std::vector >*)' is deprecated [-Wdeprecated-declarations] + 74 | AgpRead(is, bioseqs, component_id_rule, set_gap_data, component_types); + | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/agp_read.hpp:52:6: note: declared here + 52 | void AgpRead(CNcbiIstream& is, + | ^~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/format_guess_ex.cpp:66: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/seqid_validate.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/seqid_validate.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/format_guess_ex.cpp: In member function 'bool ncbi::CFormatGuessEx::x_TryRmo()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/format_guess_ex.cpp:242:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 242 | auto_ptr reader(new CRepeatMaskerReader(Flags)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -tack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/fasta.cpp -o fasta.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_formats.cpp -o aln_formats.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/alnread.cpp -o alnread.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_errors.cpp -o aln_errors.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_error_reporter.cpp -o aln_error_reporter.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_formatguess.cpp -o aln_formatguess.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -DIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/fasta.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/aln_error_reporter.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_error_reporter.cpp:32: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/aln_error_reporter.hpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqedit' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqedit/seqedit__.cpp -o seqedit__.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqedit/seqedit___.cpp -o seqedit___.o -/bin/rm -f libseqedit.so .libseqedit.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libseqedit.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC seqedit__.o seqedit___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lseqset -lseq -lgeneral -lxser -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqedit.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libseqedit.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libseqedit.so -/bin/ln -f .seqedit.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.seqedit.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqedit' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqedit' -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/alnread.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/format_guess_ex.cpp:51: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/format_guess_ex.hpp:140:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 140 | auto_ptr m_Guesser; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/alnread.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/format_guess_ex.cpp:35: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blast/Blas_get_searc_resul_reply_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blast/blast___.cpp:2: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_util.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_util.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/aln_error_reporter.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_error_reporter.cpp:32: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/aln_error_reporter.hpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_errors.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/alnread.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_errors.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/alnread.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -23010,30 +23018,43 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner.cpp: In member function 'virtual void ncbi::objects::CAlnScanner::xVerifyAlignmentData(const ncbi::objects::CSequenceInfo&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner.cpp:92:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] + 92 | for (auto i=0; i < mSequences.size(); ++i) { + | ~~^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner.cpp: In member function 'bool ncbi::objects::CAlnScanner::xSeqIdIsEqualToInfoAt(const std::string&, int)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner.cpp:233:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] + 233 | if (index >= mSeqIds.size()) { + | ~~~~~~^~~~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqedit' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqedit/seqedit__.cpp -o seqedit__.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqedit/seqedit___.cpp -o seqedit___.o +/bin/rm -f libseqedit.so .libseqedit.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libseqedit.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC seqedit__.o seqedit___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lseqset -lseq -lgeneral -lxser -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqedit.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libseqedit.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libseqedit.so +/bin/ln -f .seqedit.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.seqedit.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqedit' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqedit' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_util.cpp: In function 'void ncbi::objects::AlnUtil::CheckId(const std::string&, const std::vector&, int, int, bool)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_util.cpp:56:28: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] + 56 | if ((orderedIds.size() > idCount) && + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_util.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blast/Blas_get_searc_resul_reply_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blast/blast___.cpp:2: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_util.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_util.cpp: In function 'void ncbi::objects::AlnUtil::CheckId(const std::string&, const std::vector&, int, int, bool)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_util.cpp:56:28: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] - 56 | if ((orderedIds.size() > idCount) && - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~ -_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_util.cpp -o aln_util.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_reader.cpp -o aln_reader.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner.cpp -o aln_scanner.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_fastagap.cpp -o aln_scanner_fastagap.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_clustal.cpp -o aln_scanner_clustal.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_nexus.cpp -o aln_scanner_nexus.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_fastagap.cpp:53: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] @@ -23072,105 +23093,35 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_formatguess.cpp:295:22: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] 295 | return (dataSize == (endOffset - startOffset + 1)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqsplit' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqsplit/seqsplit__.cpp -o seqsplit__.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqsplit/seqsplit___.cpp -o seqsplit___.o -/bin/rm -f libseqsplit.so .libseqsplit.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libseqsplit.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC seqsplit__.o seqsplit___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lseqset -lseq -lxser -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqsplit.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libseqsplit.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libseqsplit.so -/bin/ln -f .seqsplit.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.seqsplit.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqsplit' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqsplit' -cd objmgr/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=objmgr UNIX_PROJ="" sources= configurables=configurables.null -cd objects/id2/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=id2 UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id2 TMPL=id2 -w -j11 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr TMPL=objmgr -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_table_setters.cpp -o seq_table_setters.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_table_info.cpp -o seq_table_info.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_annot_info.cpp -o seq_annot_info.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/table_field.cpp -o table_field.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_map_switch.cpp -o seq_map_switch.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/snp_annot_info.cpp -o snp_annot_info.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/format_guess_ex.cpp:66: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner.cpp: In member function 'virtual void ncbi::objects::CAlnScanner::xVerifyAlignmentData(const ncbi::objects::CSequenceInfo&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner.cpp:92:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] - 92 | for (auto i=0; i < mSequences.size(); ++i) { - | ~~^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner.cpp: In member function 'bool ncbi::objects::CAlnScanner::xSeqIdIsEqualToInfoAt(const std::string&, int)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner.cpp:233:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] - 233 | if (index >= mSeqIds.size()) { - | ~~~~~~^~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/aln_reader.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_reader.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/fasta.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/aln_reader.hpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_reader.cpp: In member function 'void ncbi::CAlnReader::x_VerifyAlignmentInfo(const ncbi::objects::SAlignmentFile&, TReadFlags)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_reader.cpp:409:29: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] - 409 | for (int i=0; i< numDeflines; ++i) { - | ~^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_reader.cpp: In member function 'bool ncbi::CAlnReader::x_IsGap(TNumrow, ncbi::TSeqPos, const std::string&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_reader.cpp:461:13: warning: comparison of integer expressions of different signedness: 'ncbi::CAlnReader::TNumrow' {aka 'int'} and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] - 461 | if (row > m_MiddleSections.size()) { - | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_reader.cpp: In member function 'void ncbi::CAlnReader::x_AssignDensegIds(TFastaFlags, ncbi::objects::CDense_seg&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_reader.cpp:507:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] - 507 | if (i < m_DeflineInfo.size() && !m_DeflineInfo[i].mData.empty()) { - | ~~^~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_clustal.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_clustal.cpp:33: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/format_guess_ex.cpp: In member function 'bool ncbi::CFormatGuessEx::x_TryRmo()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/format_guess_ex.cpp:242:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 242 | auto_ptr reader(new CRepeatMaskerReader(Flags)); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -23193,313 +23144,50 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_clustal.cpp: In member function 'void ncbi::objects::CAlnScannerClustal::sProcessClustalDataLine(const std::vector >&, int, int, int, bool, int&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_clustal.cpp:296:27: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] - 296 | if (currentLineLength != blockLineLength) { - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id2/ID2S_Reply_Get_Chunk_.cpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id2/id2___.cpp:2: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:36: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_phylip.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_clustal.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_phylip.cpp:33: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/snp_annot_info.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 103 | auto_ptr m_Indices; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/snp_annot_info.cpp:32: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 154 | auto_ptr m_Indices; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_phylip.cpp: In member function 'virtual void ncbi::objects::CAlnScannerPhylip::xImportAlignmentData(ncbi::objects::CSequenceInfo&, ncbi::objects::CLineInput&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_phylip.cpp:129:27: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] - 129 | if (dataLineCount < mSequenceCount) { // in first block - | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_phylip.cpp: In member function 'virtual void ncbi::objects::CAlnScannerPhylip::xVerifyAlignmentData(const ncbi::objects::CSequenceInfo&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_phylip.cpp:210:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] - 210 | if (mSequenceCount != mSeqIds.size()) { - | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_selector.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_name.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_selector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_selector.cpp:33: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_types_ci.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:36: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_clustal.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_sequin.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/aln_reader.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_reader.cpp:33: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_sequin.cpp:33: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/feat_ci.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:36: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_types_ci.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 103 | auto_ptr m_Indices; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 154 | auto_ptr m_Indices; - | ^~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/aln_reader.hpp:35: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_clustal.cpp: In member function 'void ncbi::objects::CAlnScannerClustal::sProcessClustalDataLine(const std::vector >&, int, int, int, bool, int&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_clustal.cpp:296:27: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] + 296 | if (currentLineLength != blockLineLength) { + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_multalign.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_phylip.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_multalign.cpp:33: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/seq_align_mapper.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_loc_cvt.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/seq_loc_cvt.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_loc_cvt.cpp:34: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_sequin.cpp: In member function 'virtual void ncbi::objects::CAlnScannerSequin::xImportAlignmentData(ncbi::objects::CSequenceInfo&, ncbi::objects::CLineInput&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_sequin.cpp:73:33: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] - 73 | if (lineInBlock != mSeqIds.size()) { - | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_sequin.cpp:156:29: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] - 156 | if (lineInBlock >= mSeqIds.size()) { - | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_sequin.cpp:186:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'unsigned int'} [-Wsign-compare] - 186 | for (auto i = 0; i < seqData.size(); ++i) { - | ~~^~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_loc_cvt.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 153 | auto_ptr m_Sub_I; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_sequin.cpp: In static member function 'static bool ncbi::objects::CAlnScannerSequin::xExtractSequinSequenceData(const std::string&, std::string&, std::string&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_sequin.cpp:259:42: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] - 259 | for (auto curBlock = 3; curBlock < tokens.size() - 1; ++curBlock) { - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_sequin.cpp:264:42: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] - 264 | for (auto curBlock = 1; curBlock < tokens.size(); ++curBlock) { - | ~~~~~~~~~^~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/feat_ci.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 103 | auto_ptr m_Indices; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 154 | auto_ptr m_Indices; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_annot_info.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/seq_annot_info.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_annot_info.cpp:37: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_multalign.cpp: In member function 'virtual void ncbi::objects::CAlnScannerMultAlign::xImportAlignmentData(ncbi::objects::CSequenceInfo&, ncbi::objects::CLineInput&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_multalign.cpp:125:37: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] - 125 | if (lineInBlock != expectedNumSequences) { - | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_multalign.cpp:135:48: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] - 135 | if (!inFirstBlock && lineInBlock == expectedNumSequences) { - | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_annot_info.cpp:45: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_annot_info.cpp:46: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 103 | auto_ptr m_Indices; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 154 | auto_ptr m_Indices; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/seq_align_mapper.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_map_switch.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/seq_id_handle.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_map.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_map_switch.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_map_switch.cpp:35: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_phylip.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -23613,65 +23301,39 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:53: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/feat_ci.cpp:42: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/table_field.cpp:45: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_phylip.cpp: In member function 'virtual void ncbi::objects::CAlnScannerPhylip::xImportAlignmentData(ncbi::objects::CSequenceInfo&, ncbi::objects::CLineInput&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_phylip.cpp:129:27: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] + 129 | if (dataLineCount < mSequenceCount) { // in first block + | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_phylip.cpp: In member function 'virtual void ncbi::objects::CAlnScannerPhylip::xVerifyAlignmentData(const ncbi::objects::CSequenceInfo&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_phylip.cpp:210:24: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] + 210 | if (mSequenceCount != mSeqIds.size()) { + | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_sequin.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/seq_table_info.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/table_field.cpp:34: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/snp_annot_info.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; - | ^~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_sequin.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_reader.cpp: In member function 'void ncbi::CAlnReader::x_VerifyAlignmentInfo(const ncbi::objects::SAlignmentFile&, TReadFlags)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_reader.cpp:409:29: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] + 409 | for (int i=0; i< numDeflines; ++i) { + | ~^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_reader.cpp: In member function 'bool ncbi::CAlnReader::x_IsGap(TNumrow, ncbi::TSeqPos, const std::string&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_reader.cpp:461:13: warning: comparison of integer expressions of different signedness: 'ncbi::CAlnReader::TNumrow' {aka 'int'} and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] + 461 | if (row > m_MiddleSections.size()) { + | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_reader.cpp: In member function 'void ncbi::CAlnReader::x_AssignDensegIds(TFastaFlags, ncbi::objects::CDense_seg&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_reader.cpp:507:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] + 507 | if (i < m_DeflineInfo.size() && !m_DeflineInfo[i].mData.empty()) { + | ~~^~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/reader_data.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -23782,72 +23444,23 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/fasta_reader_utils.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/fasta_reader_utils.cpp:36: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_annot_info.cpp:62: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_table_info.cpp:44: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/seq_table_info.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_table_info.cpp:34: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_sequin.cpp: In member function 'virtual void ncbi::objects::CAlnScannerSequin::xImportAlignmentData(ncbi::objects::CSequenceInfo&, ncbi::objects::CLineInput&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_sequin.cpp:73:33: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] + 73 | if (lineInBlock != mSeqIds.size()) { + | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_sequin.cpp:156:29: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] + 156 | if (lineInBlock >= mSeqIds.size()) { + | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_sequin.cpp:186:32: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'unsigned int'} [-Wsign-compare] + 186 | for (auto i = 0; i < seqData.size(); ++i) { + | ~~^~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_sequin.cpp: In static member function 'static bool ncbi::objects::CAlnScannerSequin::xExtractSequinSequenceData(const std::string&, std::string&, std::string&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_sequin.cpp:259:42: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] + 259 | for (auto curBlock = 3; curBlock < tokens.size() - 1; ++curBlock) { + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_sequin.cpp:264:42: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] + 264 | for (auto curBlock = 1; curBlock < tokens.size(); ++curBlock) { + | ~~~~~~~~~^~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/reader_base.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -23960,28 +23573,24 @@ | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/gff_reader.cpp:60: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_multalign.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiutil.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/gff_reader.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/gff_reader.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_multalign.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/gff_reader.cpp:472:18: warning: 'CGFFReader' is deprecated [-Wdeprecated-declarations] - 472 | CRef - | ^~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/gff_reader.hpp:71:44: note: declared here - 71 | class NCBI_DEPRECATED NCBI_XOBJREAD_EXPORT CGFFReader - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_multalign.cpp: In member function 'virtual void ncbi::objects::CAlnScannerMultAlign::xImportAlignmentData(ncbi::objects::CSequenceInfo&, ncbi::objects::CLineInput&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_multalign.cpp:125:37: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] + 125 | if (lineInBlock != expectedNumSequences) { + | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/aln_scanner_multalign.cpp:135:48: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] + 135 | if (!inFirstBlock && lineInBlock == expectedNumSequences) { + | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /src/objtools/readers/gff_reader.cpp -o gff_reader.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/track_data.cpp -o track_data.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/reader_data.cpp -o reader_data.o @@ -23989,14 +23598,140 @@ /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/phrap.cpp -o phrap.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/reader_base.cpp -o reader_base.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/readfeat.cpp -o readfeat.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-DEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_types_ci.cpp -o annot_types_ci.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqsplit' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqsplit/seqsplit__.cpp -o seqsplit__.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/seqsplit/seqsplit___.cpp -o seqsplit___.o +/bin/rm -f libseqsplit.so .libseqsplit.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libseqsplit.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC seqsplit__.o seqsplit___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lseqset -lseq -lxser -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqsplit.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libseqsplit.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libseqsplit.so +/bin/ln -f .seqsplit.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.seqsplit.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqsplit' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqsplit' +cd objmgr/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=objmgr UNIX_PROJ="" sources= configurables=configurables.null +cd objects/id2/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=id2 UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id2 TMPL=id2 -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr TMPL=objmgr -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_table_setters.cpp -o seq_table_setters.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_table_info.cpp -o seq_table_info.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_annot_info.cpp -o seq_annot_info.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/table_field.cpp -o table_field.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_map_switch.cpp -o seq_map_switch.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/snp_annot_info.cpp -o snp_annot_info.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_types_ci.cpp -o annot_types_ci.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_loc_cvt.cpp -o seq_loc_cvt.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_selector.cpp -o annot_selector.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_descr_ci.cpp -o seq_descr_ci.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/feat_ci.cpp -o feat_ci.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/graph_ci.cpp -o graph_ci.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_object.cpp -o annot_object.o -/usr/bin/g++ -std=gnu++14 -c -WaIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_object_index.cpp -o annot_object_index.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_ci.cpp -o annot_ci.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_info.cpp -o tse_info.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_info_object.cpp -o tse_info_object.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_entry_info.cpp -o seq_entry_info.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_base_info.cpp -o bioseq_base_info.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/buIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/fasta_reader_utils.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/fasta_reader_utils.cpp:36: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/rm_reader.cpp -o rm_reader.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/wiggle_reader.cpp -o wiggle_reader.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/gff3_reader.cpp -o gff3_reader.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/gtf_reader.cpp -o gtf_reader.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/gff3_location_merger.cpp -o gff3_location_merger.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/gtf_location_merger.cpp -o gtf_location_merger.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -DIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/gff_reader.cpp:60: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiutil.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/gff_reader.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/gff_reader.cpp:35: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/gff_reader.cpp:472:18: warning: 'CGFFReader' is deprecated [-Wdeprecated-declarations] + 472 | CRef + | ^~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/gff_reader.hpp:71:44: note: declared here + 71 | class NCBI_DEPRECATED NCBI_XOBJREAD_EXPORT CGFFReader + | ^~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/snp_annot_info.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 103 | auto_ptr m_Indices; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/snp_annot_info.cpp:32: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 154 | auto_ptr m_Indices; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id2/ID2S_Reply_Get_Chunk_.cpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id2/id2___.cpp:2: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:36: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/graph_ci.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/graph_ci.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] @@ -24024,29 +23759,56 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/reader_base.cpp:99: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_set_info.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/reader_base.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info_object.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/seq_entry_info.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_set_info.cpp:35: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/rm_reader.cpp: In member function 'ncbi::CRef ncbi::objects::CRepeatToFeat::operator()(const ncbi::objects::IRepeatRegion&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/rm_reader.cpp:554:44: warning: enum constant in boolean context [-Wint-in-bool-context] - 554 | if (fRemoveRedundancy && m_Library && - | ^~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_ci.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/feat_ci.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:36: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/gff_base_columns.cpp -o gff_base_columns.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/gff2_data.cpp -o gff2_data.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/gff2_reader.cpp -o gff2_reader.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/gvf_reader.cpp -o gvf_reader.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/vcf_reader.cpp -o vcf_reader.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/psl_reader.cpp -o psl_reader.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.1In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_types_ci.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -24072,13 +23834,67 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -ll -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_object_index.cpp -o annot_object_index.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_ci.cpp -o annot_ci.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_info.cpp -o tse_info.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_info_object.cpp -o tse_info_object.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_entry_info.cpp -o seq_entry_info.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_base_info.cpp -o bioseq_base_info.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/buIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_types_ci.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 103 | auto_ptr m_Indices; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 154 | auto_ptr m_Indices; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_set_info.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/feat_ci.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 103 | auto_ptr m_Indices; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 154 | auto_ptr m_Indices; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/rm_reader.cpp: In member function 'ncbi::CRef ncbi::objects::CRepeatToFeat::operator()(const ncbi::objects::IRepeatRegion&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/rm_reader.cpp:554:44: warning: enum constant in boolean context [-Wint-in-bool-context] + 554 | if (fRemoveRedundancy && m_Library && + | ^~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/seq_align_mapper.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_map_switch.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/seq_id_handle.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_map.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_map_switch.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_map_switch.cpp:35: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_info.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; @@ -24103,20 +23919,10 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id2/id2__.cpp -o id2__.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id2/id2___.cpp -o id2___.o -/bin/rm -f libid2.so .libid2.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libid2.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC id2__.o id2___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lseqsplit -lseq -lxser -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libid2.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libid2.so -/bin/ln -f .id2.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.id2.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_info.cpp:44: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 103 | auto_ptr m_Indices; | ^~~~~~~~ -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -24126,28 +23932,7 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -cd objtools/pubseq_gateway/client/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=psg_client UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: *** No rule to make target '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/LIBUV.enabled', needed by 'requirements'. Stop. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' -NOTE: skipping project "psg_client" due to unmet requirements -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' -blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/rm_reader.cpp -o rm_reader.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/wiggle_reader.cpp -o wiggle_reader.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/gff3_reader.cpp -o gff3_reader.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/gtf_reader.cpp -o gtf_reader.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/gff3_location_merger.cpp -o gff3_location_merger.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/gtf_location_merger.cpp -o gtf_location_merger.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -DIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_info_object.cpp:36: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_selector.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ @@ -24155,46 +23940,32 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info_object.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_info_object.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_name.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_selector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_selector.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/readfeat.cpp: In member function 'bool ncbi::objects::CFeatureTableReader_Imp::x_AddQualifierToCdregion(ncbi::CRef, ncbi::objects::CSeqFeatData&, EQual, const std::string&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/readfeat.cpp:1406:22: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] - 1406 | } catch( CStringException ) { - | ^~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/priority.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 153 | auto_ptr m_Sub_I; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_entry_info.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/feat_ci.cpp:42: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info_object.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/seq_entry_info.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_entry_info.cpp:35: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_base_info.cpp:40: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_annot_info.cpp:41: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ @@ -24204,28 +23975,50 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/bioseq_base_info.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_base_info.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/seq_annot_info.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_annot_info.cpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_entry_info.cpp:40: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_annot_info.cpp:45: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -ild/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_set_info.cpp -o bioseq_set_info.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_info.cpp -o bioseq_info.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/data_source.cpp -o data_source.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/priority.cpp -o priority.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/prefetch_impl.cpp -o prefetch_impl.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/prefetch_manager.cpp -o prefetch_manager.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/prefetch_manager_impl.cpp -o prefetch_manager_impl.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+dsIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_info.cpp:37: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_annot_info.cpp:46: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 103 | auto_ptr m_Indices; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 154 | auto_ptr m_Indices; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_entry_info.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info_object.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/seq_entry_info.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_entry_info.cpp:35: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_info.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ @@ -24250,9 +24043,12 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_set_info.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/seq_align_mapper.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_loc_cvt.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, @@ -24260,36 +24056,93 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info_object.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/seq_entry_info.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_set_info.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/seq_loc_cvt.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_loc_cvt.cpp:34: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/prefetch_impl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/prefetch_impl.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_entry_info.cpp:40: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/psl_data.cpp: In member function 'void ncbi::objects::CPslData::Initialize(const ncbi::objects::CReaderBase::TReaderLine&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/psl_data.cpp:144:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] + 144 | if (mBlockCount != mBlockSizes.size()) { + | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/psl_data.cpp:150:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] + 150 | if (mBlockCount != mBlockStartsQ.size()) { + | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/psl_data.cpp:156:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] + 156 | if (mBlockCount != mBlockStartsT.size()) { + | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_reader.cpp:47: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.hpp: In member function 'bool ncbi::objects::CAutoSqlStandardFields::ContainsInfo() const': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.hpp:92:34: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] + 91 | return (mColChrom + mColSeqStart + mColSeqStop + mColStrand + + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 92 | mColName + mColScore != -6); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_reader.cpp: In member function 'virtual bool ncbi::objects::CBedReader::xDetermineLikelyColumnCount(ncbi::objects::CLinePreBuffer&, ncbi::objects::ILineErrorListener*)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_reader.cpp:484:35: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] + 484 | if (blockSizes.size() != blockCount) { + | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_reader.cpp:505:36: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] + 505 | if (blockStarts.size() != blockCount) { + | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/vcf_reader.cpp: In member function 'virtual void ncbi::objects::CVcfReader::xSetFileFormat(const std::string&, ncbi::objects::CSeq_annot&, bool&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/vcf_reader.cpp:332:27: warning: catching polymorphic type 'class std::exception' by value [-Wcatch-value=] + 332 | catch (std::exception except) { + | ^~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_loc_cvt.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 153 | auto_ptr m_Sub_I; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/gff2_reader.cpp: In member function 'bool ncbi::objects::CGff2Reader::xGetStartsOnPlusStrand(ncbi::TSeqPos, const std::vector >&, bool, std::vector&) const': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/gff2_reader.cpp:834:21: warning: comparison of integer expressions of different signedness: 'int' and 'const unsigned int' [-Wsign-compare] + 834 | for (auto i=0; i >&, ncbi::objects::ENa_strand, ncbi::objects::ENa_strand, ncbi::TSeqPos, ncbi::TSeqPos, const ncbi::objects::CGff2Record&, ncbi::objects::CSeq_align_Base::C_Segs::TDenseg&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/gff2_reader.cpp:923:21: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] + 923 | for (auto i=0; i)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/gff2_reader.cpp:1008:21: warning: comparison of integer expressions of different signedness: 'int' and 'const unsigned int' [-Wsign-compare] + 1008 | for (auto i=0; i class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 153 | auto_ptr m_Sub_I; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/prefetch_impl.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blast/blast__.cpp -o blast__.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blast/blast___.cpp -o blast___.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blast/names.cpp -o names.o -/bin/rm -f libxnetblast.so .libxnetblast.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libxnetblast.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC blast__.o blast___.o names.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lscoremat -lseqset -lseq -lxser -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblast.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libxnetblast.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxnetblast.so -/bin/ln -f .xnetblast.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xnetblast.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/data_source.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] @@ -24307,36 +24160,6 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' -cd objects/blast/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xnetblastcli UNIX_PROJ="" sources= configurables=configurables.null -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blast_unit_test_util UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqalign_util UNIX_PROJ="" sources= configurables=configurables.null -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -cd app/blast/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blast_app_util UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] @@ -24345,30 +24168,6 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blast TMPL=xnetblastcli -w -j11 --jobserver-auth=7,8 all -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=seqalign_util -w -j11 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=blast_unit_test_util -w -j11 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast TMPL=blast_app_util -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_set_info.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:53, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/priority.cpp:37: @@ -24378,6 +24177,27 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/data_source.cpp:71: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] @@ -24386,234 +24206,163 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql.cpp:33: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.hpp: In member function 'bool ncbi::objects::CAutoSqlStandardFields::ContainsInfo() const': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.hpp:92:34: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] + 91 | return (mColChrom + mColSeqStart + mColSeqStop + mColStrand + + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 92 | mColName + mColScore != -6); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp:33: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.hpp: In member function 'bool ncbi::objects::CAutoSqlStandardFields::ContainsInfo() const': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.hpp:92:34: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] + 91 | return (mColChrom + mColSeqStart + mColSeqStop + mColStrand + + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 92 | mColName + mColScore != -6); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp: In member function 'bool ncbi::objects::CAutoSqlStandardFields::SetLocation(const ncbi::objects::CBedColumnData&, int, ncbi::objects::CSeq_feat&, ncbi::objects::CReaderMessageHandler&) const': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp:127:20: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'int' [-Wsign-compare] + 127 | if (mColStrand == -1) { + | ~~~~~~~~~~~^~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp: In member function 'bool ncbi::objects::CAutoSqlStandardFields::SetTitle(const ncbi::objects::CBedColumnData&, int, ncbi::objects::CSeq_feat&, ncbi::objects::CReaderMessageHandler&) const': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp:162:19: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'int' [-Wsign-compare] + 162 | if (mColChrom == -1) { + | ~~~~~~~~~~^~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp: In member function 'bool ncbi::objects::CAutoSqlStandardFields::Validate(ncbi::objects::CReaderMessageHandler&) const': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp:176:19: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'int' [-Wsign-compare] + 176 | if (mColChrom == -1 || mColSeqStart == -1 || mColSeqStop == -1) { + | ~~~~~~~~~~^~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp:176:43: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'int' [-Wsign-compare] + 176 | if (mColChrom == -1 || mColSeqStart == -1 || mColSeqStop == -1) { + | ~~~~~~~~~~~~~^~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp:176:66: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'int' [-Wsign-compare] + 176 | if (mColChrom == -1 || mColSeqStart == -1 || mColSeqStop == -1) { + | ~~~~~~~~~~~~^~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp: In member function 'void ncbi::objects::CAutoSqlStandardFields::Dump(std::ostream&) const': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp:194:19: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'int' [-Wsign-compare] + 194 | if (mColChrom != -1) { + | ~~~~~~~~~~^~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp:197:22: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'int' [-Wsign-compare] + 197 | if (mColSeqStart != -1) { + | ~~~~~~~~~~~~~^~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp:200:21: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'int' [-Wsign-compare] + 200 | if (mColSeqStop != -1) { + | ~~~~~~~~~~~~^~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp:203:20: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'int' [-Wsign-compare] + 203 | if (mColStrand != -1) { + | ~~~~~~~~~~~^~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp:206:18: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'int' [-Wsign-compare] + 206 | if (mColName != -1) { + | ~~~~~~~~~^~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp:209:19: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'int' [-Wsign-compare] + 209 | if (mColScore != -1) { + | ~~~~~~~~~~^~~~~ +2.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/psl_data.cpp -o psl_data.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_reader.cpp -o bed_reader.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql.cpp -o bed_autosql.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp -o bed_autosql_standard.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_custom.cpp -o bed_autosql_custom.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_column_data.cpp -o bed_column_data.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_custom.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_custom.cpp:33: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_custom.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.hpp: In member function 'bool ncbi::objects::CAutoSqlStandardFields::ContainsInfo() const': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.hpp:92:34: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] + 91 | return (mColChrom + mColSeqStart + mColSeqStop + mColStrand + + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 92 | mColName + mColScore != -6); + | ~~~~~~~~~~~~~~~~~~~~~^~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/prefetch_impl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/prefetch_impl.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/prefetch_impl.hpp:36: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/prefetch_impl.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/prefetch_impl.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/prefetch_impl.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 153 | auto_ptr m_Sub_I; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/test_objmgr.cpp:45: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp:61: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_app_util.cpp:54: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/ucscregion_reader.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -24722,98 +24471,74 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/data_source.cpp:71: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/prefetch_impl.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +ild/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_set_info.cpp -o bioseq_set_info.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_info.cpp -o bioseq_info.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/data_source.cpp -o data_source.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/priority.cpp -o priority.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/prefetch_impl.cpp -o prefetch_impl.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/prefetch_manager.cpp -o prefetch_manager.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/prefetch_manager_impl.cpp -o prefetch_manager_impl.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+dsIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:53: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/prefetch_impl.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/source_mod_parser.cpp: In function 'void ncbi::objects::s_GetPrimerInfo(const CSourceModParser::SMod*, const CSourceModParser::SMod*, std::vector, std::__cxx11::basic_string > >&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/source_mod_parser.cpp:877:20: warning: comparison of integer expressions of different signedness: 'int' and 'const unsigned int' [-Wsign-compare] + 877 | for (int i=0; i&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/source_mod_parser.cpp:912:25: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] + 912 | for (auto i=0; i class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/prefetch_impl.cpp:40: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/heap_scope.cpp:42: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 153 | auto_ptr m_Sub_I; | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blast/blastclient_.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/heap_scope.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/heap_scope.cpp:41: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/prefetch_actions.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/prefetch_actions.cpp:34: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope.cpp:41: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -24821,8 +24546,9 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/prefetch_manager.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/prefetch_actions.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:43: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -24838,46 +24564,18 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/gff2_reader.cpp: In member function 'bool ncbi::objects::CGff2Reader::xGetStartsOnPlusStrand(ncbi::TSeqPos, const std::vector >&, bool, std::vector&) const': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/gff2_reader.cpp:834:21: warning: comparison of integer expressions of different signedness: 'int' and 'const unsigned int' [-Wsign-compare] - 834 | for (auto i=0; i >&, ncbi::objects::ENa_strand, ncbi::objects::ENa_strand, ncbi::TSeqPos, ncbi::TSeqPos, const ncbi::objects::CGff2Record&, ncbi::objects::CSeq_align_Base::C_Segs::TDenseg&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/gff2_reader.cpp:923:21: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] - 923 | for (auto i=0; i)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/gff2_reader.cpp:1008:21: warning: comparison of integer expressions of different signedness: 'int' and 'const unsigned int' [-Wsign-compare] - 1008 | for (auto i=0; i class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:45: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/prefetch_actions.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope.cpp:46: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 153 | auto_ptr m_Sub_I; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/test_objmgr.cpp:34: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/prefetch_actions.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/prefetch_actions.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -24885,10 +24583,8 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Na_strand_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Na_strand.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/prefetch_manager.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/prefetch_actions.hpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -24905,67 +24601,10 @@ 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/heap_scope.cpp:42: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/prefetch_actions.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 153 | auto_ptr m_Sub_I; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/heap_scope.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/heap_scope.cpp:41: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:56, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:41: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/gff_base_columns.cpp -o gff_base_columns.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/gff2_data.cpp -o gff2_data.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/gff2_reader.cpp -o gff2_reader.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/gvf_reader.cpp -o gvf_reader.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/vcf_reader.cpp -o vcf_reader.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/psl_reader.cpp -o psl_reader.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.1In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:43: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -24985,66 +24624,33 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope.cpp:46: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 153 | auto_ptr m_Sub_I; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:53: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqalign_cmp.cpp -o seqalign_cmp.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqalign_set_convert.cpp -o seqalign_set_convert.o -/bin/rm -f libseqalign_util.a .libseqalign_util.a.stamp -ar cr libseqalign_util.a seqalign_cmp.o seqalign_set_convert.o -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqalign_util.a /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libseqalign_util.a /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libseqalign_util.a -/bin/ln -f .seqalign_util.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.seqalign_util.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/test_objmgr.cpp:35: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/prefetch_actions.cpp -o prefetch_actions.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope.cpp -o scope.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/heap_scope.cpp -o heap_scope.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope_impl.cpp -o scope_impl.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope_info.cpp -o scope_info.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_handle.cpp -o tse_handle.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:53: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_app_util.hpp:40: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/heap_scope.cpp:43: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -25063,105 +24669,6 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:53: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:48, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp:57: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:49: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/vcf_reader.cpp: In member function 'virtual void ncbi::objects::CVcfReader::xSetFileFormat(const std::string&, ncbi::objects::CSeq_annot&, bool&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/vcf_reader.cpp:332:27: warning: catching polymorphic type 'class std::exception' by value [-Wcatch-value=] - 332 | catch (std::exception except) { - | ^~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:53: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/test_objmgr.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] @@ -25170,46 +24677,33 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blast/blastclient.cpp -o blastclient.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blast/blastclient_.cpp -o blastclient_.o -/bin/rm -f libxnetblastcli.so .libxnetblastcli.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libxnetblastcli.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC blastclient.o blastclient_.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxnetblast -lxconnect -lxser -lxutil -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblastcli.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libxnetblastcli.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxnetblastcli.so -/bin/ln -f .xnetblastcli.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xnetblastcli.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' -cd objtools/blast/services/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blast_services UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope_info.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 153 | auto_ptr m_Sub_I; - | ^~~~~~~~ +blast+-2.12.0+ds/c++/src/objtools/readers/best_feat_finder.cpp -o best_feat_finder.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/source_mod_parser.cpp -o source_mod_parser.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/fasta_exception.cpp -o fasta_exception.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/agp_converter.cpp -o agp_converter.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/ucscregion_reader.cpp -o ucscregion_reader.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/struct_cmt_reader.cpp -o struct_cmt_reader.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/mod_reader.cpp -o mod_reader.o +/usr/bin/g++ -std=gnu++14 -c -Wall -WnoIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/mod_reader.cpp:43: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_info.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope_info.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/mod_reader.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services' -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_handle.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 153 | auto_ptr m_Sub_I; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_table_info.cpp:44: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, @@ -25217,18 +24711,23 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/tse_handle.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_handle.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/seq_table_info.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_table_info.cpp:34: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/services TMPL=blast_services -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope_impl.cpp:41: @@ -25245,27 +24744,6 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/heap_scope.cpp:43: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ @@ -25278,10 +24756,19 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_app_util.hpp:45: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope_info.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 153 | auto_ptr m_Sub_I; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_info.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope_info.cpp:35: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -25292,59 +24779,27 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_app_util.hpp:50: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:53: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope_impl.cpp:51: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_handle.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 153 | auto_ptr m_Sub_I; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/tse_handle.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_handle.cpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -25356,21 +24811,6 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_reader.cpp:47: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.hpp: In member function 'bool ncbi::objects::CAutoSqlStandardFields::ContainsInfo() const': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.hpp:92:34: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] - 91 | return (mColChrom + mColSeqStart + mColSeqStop + mColStrand + - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 92 | mColName + mColScore != -6); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_reader.cpp: In member function 'virtual bool ncbi::objects::CBedReader::xDetermineLikelyColumnCount(ncbi::objects::CLinePreBuffer&, ncbi::objects::ILineErrorListener*)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_reader.cpp:484:35: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] - 484 | if (blockSizes.size() != blockCount) { - | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_reader.cpp:505:36: warning: comparison of integer expressions of different signedness: 'std::vector >::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] - 505 | if (blockStarts.size() != blockCount) { - | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] @@ -25379,63 +24819,83 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope_impl.cpp:51: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_info_object.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope_info.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_app_util.cpp:44: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/search_strategy.hpp:178:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 178 | auto_ptr m_Data; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/search_strategy.hpp:181:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 181 | auto_ptr m_OptionsBuilder; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql.cpp:40: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/reader_base.cpp:99: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info_object.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_info_object.cpp:35: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_handle.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope_impl.cpp:58: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 153 | auto_ptr m_Sub_I; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/reader_base.cpp:34: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:53: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope_info.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_handle.cpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -25454,50 +24914,54 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.hpp: In member function 'bool ncbi::objects::CAutoSqlStandardFields::ContainsInfo() const': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.hpp:92:34: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] - 91 | return (mColChrom + mColSeqStart + mColSeqStop + mColStrand + - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 92 | mColName + mColScore != -6); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_map_ci.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/descr_mod_apply.cpp:66: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/seq_id_handle.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_map.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_map_ci.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_map_ci.cpp:36: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/descr_mod_apply.cpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/feature_mod_apply.cpp:45: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/feature_mod_apply.cpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_app_util.cpp:49: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ +=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/prefetch_actions.cpp -o prefetch_actions.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope.cpp -o scope.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/heap_scope.cpp -o heap_scope.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope_impl.cpp -o scope_impl.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope_info.cpp -o scope_info.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_handle.cpp -o tse_handle.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/message_listener.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/message_listener.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/message_listener.cpp:35: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -25520,123 +24984,63 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 528 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/psl_data.cpp: In member function 'void ncbi::objects::CPslData::Initialize(const ncbi::objects::CReaderBase::TReaderLine&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/psl_data.cpp:144:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] - 144 | if (mBlockCount != mBlockSizes.size()) { - | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/psl_data.cpp:150:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] - 150 | if (mBlockCount != mBlockStartsQ.size()) { - | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/psl_data.cpp:156:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] - 156 | if (mBlockCount != mBlockStartsT.size()) { - | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope_impl.cpp:58: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 153 | auto_ptr m_Sub_I; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_map.cpp:43: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 449 | auto_ptr m_ConfigFile; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 450 | auto_ptr m_Reg; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_map_ci.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/seq_id_handle.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_map.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_map_ci.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_map_ci.cpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.hpp: In member function 'bool ncbi::objects::CAutoSqlStandardFields::ContainsInfo() const': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.hpp:92:34: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] - 91 | return (mColChrom + mColSeqStart + mColSeqStop + mColStrand + - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 92 | mColName + mColScore != -6); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_map.cpp:43: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp: In member function 'bool ncbi::objects::CAutoSqlStandardFields::SetLocation(const ncbi::objects::CBedColumnData&, int, ncbi::objects::CSeq_feat&, ncbi::objects::CReaderMessageHandler&) const': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp:127:20: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'int' [-Wsign-compare] - 127 | if (mColStrand == -1) { - | ~~~~~~~~~~~^~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp: In member function 'bool ncbi::objects::CAutoSqlStandardFields::SetTitle(const ncbi::objects::CBedColumnData&, int, ncbi::objects::CSeq_feat&, ncbi::objects::CReaderMessageHandler&) const': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp:162:19: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'int' [-Wsign-compare] - 162 | if (mColChrom == -1) { - | ~~~~~~~~~~^~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp: In member function 'bool ncbi::objects::CAutoSqlStandardFields::Validate(ncbi::objects::CReaderMessageHandler&) const': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp:176:19: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'int' [-Wsign-compare] - 176 | if (mColChrom == -1 || mColSeqStart == -1 || mColSeqStop == -1) { - | ~~~~~~~~~~^~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp:176:43: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'int' [-Wsign-compare] - 176 | if (mColChrom == -1 || mColSeqStart == -1 || mColSeqStop == -1) { - | ~~~~~~~~~~~~~^~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp:176:66: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'int' [-Wsign-compare] - 176 | if (mColChrom == -1 || mColSeqStart == -1 || mColSeqStop == -1) { - | ~~~~~~~~~~~~^~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp: In member function 'void ncbi::objects::CAutoSqlStandardFields::Dump(std::ostream&) const': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp:194:19: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'int' [-Wsign-compare] - 194 | if (mColChrom != -1) { - | ~~~~~~~~~~^~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp:197:22: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'int' [-Wsign-compare] - 197 | if (mColSeqStart != -1) { - | ~~~~~~~~~~~~~^~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp:200:21: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'int' [-Wsign-compare] - 200 | if (mColSeqStop != -1) { - | ~~~~~~~~~~~~^~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp:203:20: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'int' [-Wsign-compare] - 203 | if (mColStrand != -1) { - | ~~~~~~~~~~~^~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp:206:18: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'int' [-Wsign-compare] - 206 | if (mColName != -1) { - | ~~~~~~~~~^~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp:209:19: warning: comparison of integer expressions of different signedness: 'const size_t' {aka 'const unsigned int'} and 'int' [-Wsign-compare] - 209 | if (mColScore != -1) { - | ~~~~~~~~~~^~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -25654,53 +25058,6 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_custom.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_custom.cpp:33: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/test_objmgr.cpp -o test_objmgr.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp -o blast_test_util.o -/bin/rm -f libblast_unit_test_util.a .libblast_unit_test_util.a.stamp -ar cr libblast_unit_test_util.a test_objmgr.o blast_test_util.o -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_unit_test_util.a /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libblast_unit_test_util.a /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libblast_unit_test_util.a -/bin/ln -f .blast_unit_test_util.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.blast_unit_test_util.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_custom.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.hpp: In member function 'bool ncbi::objects::CAutoSqlStandardFields::ContainsInfo() const': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.hpp:92:34: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare] - 91 | return (mColChrom + mColSeqStart + mColSeqStop + mColStrand + - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 92 | mColName + mColScore != -6); - | ~~~~~~~~~~~~~~~~~~~~~^~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 414 | auto_ptr m_SamFormatter; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -2.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/psl_data.cpp -o psl_data.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_reader.cpp -o bed_reader.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql.cpp -o bed_autosql.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_standard.cpp -o bed_autosql_standard.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_autosql_custom.cpp -o bed_autosql_custom.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/bed_column_data.cpp -o bed_column_data.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_app_util.cpp: In function 'void ncbi::CheckMTByQueries_DBSize(CRef&, const blast::CBlastOptions&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_app_util.cpp:1011:18: warning: unused variable 'prog' [-Wunused-variable] - 1011 | EProgram prog = opt.GetProgram(); - | ^~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:53: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] @@ -25717,9 +25074,10 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_table_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_table_ci.cpp:34: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_annot_ci.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_annot_ci.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -25729,7 +25087,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_annot_ci.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -25745,10 +25103,9 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_annot_ci.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_annot_ci.cpp:34: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_table_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_table_ci.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -25758,7 +25115,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_annot_ci.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -25774,120 +25131,6 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_app_util.cpp: At global scope: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_app_util.cpp:127:15: warning: 'std::string ncbi::s_FindBlastDbDataLoaderName(const std::string&, bool)' defined but not used [-Wunused-function] - 127 | static string s_FindBlastDbDataLoaderName(const string& dbname, bool is_protein) - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/ucscregion_reader.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_map.cpp -o seq_map.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_map_ci.cpp -o seq_map_ci.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_entry_ci.cpp -o seq_entry_ci.o @@ -25895,14 +25138,7 @@ /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_table_ci.cpp -o seq_table_ci.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_entry_handle.cpp -o seq_entry_handle.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_set_handle.cpp -o bioseq_set_handle.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=6blast+-2.12.0+ds/c++/src/objtools/readers/best_feat_finder.cpp -o best_feat_finder.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/source_mod_parser.cpp -o source_mod_parser.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/fasta_exception.cpp -o fasta_exception.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/agp_converter.cpp -o agp_converter.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/ucscregion_reader.cpp -o ucscregion_reader.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/struct_cmt_reader.cpp -o struct_cmt_reader.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/mod_reader.cpp -o mod_reader.o -/usr/bin/g++ -std=gnu++14 -c -Wall -WnoIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=6In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_annot_ci.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_entry_handle.cpp:36: @@ -25976,19 +25212,9 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/services/blast_services.cpp -o blast_services.o -/bin/rm -f libblast_services.so .libblast_services.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libblast_services.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC blast_services.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxnetblastcli -lxnetblast -lxser -lxconnect -lxutil -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_services.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libblast_services.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libblast_services.so -/bin/ln -f .blast_services.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.blast_services.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services' -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_handle.cpp:37: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/table_field.cpp:45: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -25996,8 +25222,10 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/bioseq_handle.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_handle.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/seq_table_info.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/table_field.cpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -26013,32 +25241,9 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/mod_reader.cpp:43: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/mod_reader.cpp:33: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_handle.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 153 | auto_ptr m_Sub_I; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/align_ci.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/align_ci.cpp:34: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_set_handle.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -26046,7 +25251,10 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/align_ci.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/bioseq_set_handle.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_set_handle.cpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -26064,7 +25272,8 @@ | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_set_handle.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_handle.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -26072,10 +25281,8 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/bioseq_set_handle.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_set_handle.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/bioseq_handle.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_handle.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -26091,6 +25298,22 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_set_handle.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 153 | auto_ptr m_Sub_I; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_handle.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 153 | auto_ptr m_Sub_I; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:53: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] @@ -26107,10 +25330,53 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_set_handle.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 153 | auto_ptr m_Sub_I; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:53: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_base_info.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/bioseq_base_info.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_base_info.cpp:35: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/bioseq_set_edit_commands.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_set_handle.cpp:43: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/edit_commands_impl.hpp:276:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 276 | auto_ptr m_Memeto; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/edit_commands_impl.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_Memeto; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/edit_commands_impl.hpp:367:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 367 | auto_ptr m_Memeto; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; @@ -26135,8 +25401,9 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_annot_handle.cpp:35: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_ci.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -26146,8 +25413,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_annot_handle.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_annot_handle.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -26163,36 +25429,17 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/source_mod_parser.cpp: In function 'void ncbi::objects::s_GetPrimerInfo(const CSourceModParser::SMod*, const CSourceModParser::SMod*, std::vector, std::__cxx11::basic_string > >&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/source_mod_parser.cpp:877:20: warning: comparison of integer expressions of different signedness: 'int' and 'const unsigned int' [-Wsign-compare] - 877 | for (int i=0; i&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/source_mod_parser.cpp:912:25: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] - 912 | for (auto i=0; i class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/snp_annot_info.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_annot_handle.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, @@ -26200,52 +25447,27 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_annot_handle.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_annot_handle.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_annot_handle.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 153 | auto_ptr m_Sub_I; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/descr_mod_apply.cpp:66: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/descr_mod_apply.cpp:34: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/feature_mod_apply.cpp:45: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/feature_mod_apply.cpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:53: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_annot_handle.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 153 | auto_ptr m_Sub_I; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; @@ -26266,16 +25488,8 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/bioseq_set_edit_commands.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_set_handle.cpp:43: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/seq_annot_edit_commands.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_annot_handle.cpp:43: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/edit_commands_impl.hpp:276:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 276 | auto_ptr m_Memeto; | ^~~~~~~~ @@ -26294,38 +25508,44 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/seq_annot_edit_commands.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_annot_handle.cpp:43: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/edit_commands_impl.hpp:276:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 276 | auto_ptr m_Memeto; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/data_loader.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/edit_commands_impl.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_Memeto; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/align_ci.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/align_ci.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/align_ci.hpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/edit_commands_impl.hpp:367:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 367 | auto_ptr m_Memeto; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/message_listener.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/message_listener.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/message_listener.cpp:35: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -26386,15 +25606,6 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_app_util.cpp -o blast_app_util.o -/bin/rm -f libblast_app_util.a .libblast_app_util.a.stamp -ar cr libblast_app_util.a blast_app_util.o -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_app_util.a /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libblast_app_util.a /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libblast_app_util.a -/bin/ln -f .blast_app_util.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.blast_app_util.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/handle_range_map.cpp:44: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; @@ -26448,13 +25659,7 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ - -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/object_manager.cpp -o object_manager.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_vector.cpp -o seq_vector.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_vector_ci.cpp -o seq_vector_ci.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seqdesc_ci.cpp -o seqdesc_ci.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_split_info.cpp -o tse_split_info.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_chunk_info.cpp -o tse_chunk_info.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_vector.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; @@ -26472,7 +25677,8 @@ | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seqdesc_ci.cpp:41: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_vector_ci.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -26480,13 +25686,8 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/Seqdesc_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/Seqdesc.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/Seq_descr.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_descr_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seqdesc_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seqdesc_ci.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/bioseq_handle.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -26504,8 +25705,7 @@ | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_vector_ci.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seqdesc_ci.cpp:41: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -26513,8 +25713,13 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/bioseq_handle.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/Seqdesc_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/Seqdesc.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/Seq_descr.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_descr_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seqdesc_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seqdesc_ci.cpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -26530,7 +25735,7 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_chunk_info.cpp:38: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_split_info.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ @@ -26540,21 +25745,27 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_chunk_info.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_chunk_info.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_split_info.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_split_info.cpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_chunk_info.cpp:43: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_split_info.cpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_split_info.cpp:37: + -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/object_manager.cpp -o object_manager.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_vector.cpp -o seq_vector.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_vector_ci.cpp -o seq_vector_ci.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seqdesc_ci.cpp -o seqdesc_ci.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_split_info.cpp -o tse_split_info.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_chunk_info.cpp -o tse_chunk_info.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_chunk_info.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ @@ -26564,47 +25775,20 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_split_info.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_split_info.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_chunk_info.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_chunk_info.cpp:35: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_split_info.cpp:39: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_chunk_info.cpp:43: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_type_index.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbithr_conf.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimtx.hpp:62, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_type_index.cpp:34: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_ci.cpp:35: @@ -26642,13 +25826,6 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_type_index.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:53: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] @@ -26665,17 +25842,8 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_ci.cpp -o bioseq_ci.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_type_index.cpp -o annot_type_index.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_loc_mapper.cpp -o seq_loc_mapper.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_align_mapper.cpp -o seq_align_mapper.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_collector.cpp -o annot_collector.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/data_loader_factory.cpp -o data_loader_factory.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/mapped_feat.cpp -o mapped_feat.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/shIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/seq_align_mapper.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_align_mapper.cpp:34: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_type_index.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -26683,11 +25851,9 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/seq_id_handle.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/seq_align_mapper.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbithr_conf.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimtx.hpp:62, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_type_index.cpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -26703,36 +25869,44 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ --format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/mod_error.cpp -o mod_error.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/descr_mod_apply.cpp -o descr_mod_apply.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/feature_mod_apply.cpp -o feature_mod_apply.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/mod_to_enum.cpp -o mod_to_enum.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/message_listener.cpp -o message_listener.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/line_error.cpp -o line_error.o -/bin/rm -f libxobjread.so .libxobjread.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libxobjread.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader_factory.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/data_loader_factory.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_type_index.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_loc_mapper.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader_factory.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_loc_mapper.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_loc_mapper.cpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_align_mapper.cpp: In member function 'virtual ncbi::objects::CSeq_align_Mapper_Base* ncbi::objects::CSeq_align_Mapper::CreateSubAlign(const ncbi::objects::CSpliced_seg&, const ncbi::objects::CSpliced_exon&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_align_mapper.cpp:466:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 466 | auto_ptr sub(new CSeq_align_Mapper(GetLocMapper())); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_loc_mapper.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/seq_align_mapper.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_align_mapper.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -26740,8 +25914,11 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_loc_mapper.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_loc_mapper.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/seq_id_handle.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/seq_align_mapper.hpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -26764,6 +25941,13 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_align_mapper.cpp: In member function 'virtual ncbi::objects::CSeq_align_Mapper_Base* ncbi::objects::CSeq_align_Mapper::CreateSubAlign(const ncbi::objects::CSpliced_seg&, const ncbi::objects::CSpliced_exon&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_align_mapper.cpp:466:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 466 | auto_ptr sub(new CSeq_align_Mapper(GetLocMapper())); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_collector.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; @@ -26790,51 +25974,32 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_collector.cpp:43: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_collector.cpp:46: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader_factory.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/data_loader_factory.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/mapped_feat.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader_factory.hpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -are/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_feat_handle.cpp -o seq_feat_handle.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_graph_handle.cpp -o seq_graph_handle.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_align_handle.cpp -o seq_align_handle.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_assigner.cpp -o tse_assigner.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope_transaction.cpp -o scope_transaction.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope_transaction_impl.cpp -o scope_transaction_impl.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncb/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_collector.cpp:43: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_collector.cpp:46: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -26859,8 +26024,16 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_feat_handle.cpp:35: +blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_ci.cpp -o bioseq_ci.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_type_index.cpp -o annot_type_index.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_loc_mapper.cpp -o seq_loc_mapper.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_align_mapper.cpp -o seq_align_mapper.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_collector.cpp -o annot_collector.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/data_loader_factory.cpp -o data_loader_factory.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/mapped_feat.cpp -o mapped_feat.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/shIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/mapped_feat.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -26868,9 +26041,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -26886,10 +26057,10 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope_transaction_impl.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 153 | auto_ptr m_Sub_I; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_feat_handle.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, @@ -26897,7 +26068,19 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:43: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:36: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -26922,50 +26105,6 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/edit_commands_impl.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/edit_commands_impl.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 153 | auto_ptr m_Sub_I; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/edit_commands_impl.hpp:35: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_graph_handle.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_graph_handle.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_graph_handle.cpp:35: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:53: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] @@ -27002,23 +26141,9 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_graph_handle.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 153 | auto_ptr m_Sub_I; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -openmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC reader_message.o reader_listener.o reader_message_handler.o read_util.o format_guess_ex.o seqid_validate.o acc_pattern.o agp_read.o agp_seq_entry.o agp_util.o agp_validate_reader.o cigar.o fasta.o aln_formats.o alnread.o aln_errors.o aln_error_reporter.o aln_formatguess.o aln_util.o aln_reader.o aln_scanner.o aln_scanner_fastagap.o aln_scanner_clustal.o aln_scanner_nexus.o aln_scanner_phylip.o aln_scanner_sequin.o aln_scanner_multalign.o fasta_aln_builder.o fasta_reader_utils.o getfeature.o gff_reader.o track_data.o reader_data.o microarray_reader.o phrap.o reader_base.o readfeat.o rm_reader.o wiggle_reader.o gff3_reader.o gtf_reader.o gff3_location_merger.o gtf_location_merger.o gff_base_columns.o gff2_data.o gff2_reader.o gvf_reader.o vcf_reader.o psl_reader.o psl_data.o bed_reader.o bed_autosql.o bed_autosql_standard.o bed_autosql_custom.o bed_column_data.o best_feat_finder.o source_mod_parser.o fasta_exception.o agp_converter.o ucscregion_reader.o struct_cmt_reader.o mod_reader.o mod_error.o descr_mod_apply.o feature_mod_apply.o mod_to_enum.o message_listener.o line_error.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lsubmit -lseqset -lseq -lseqcode -lsequtil -lgeneral -lxutil -lxlogging -lpub -lxser -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjread.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libxobjread.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxobjread.so -/bin/ln -f .xobjread.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xobjread.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/readers' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/readers' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope_transaction.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_graph_handle.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -27028,7 +26153,8 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:43: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_graph_handle.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_graph_handle.cpp:35: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -27044,10 +26170,10 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:53: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_graph_handle.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 153 | auto_ptr m_Sub_I; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; @@ -27081,15 +26207,6 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope_transaction.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 153 | auto_ptr m_Sub_I; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:53: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] @@ -27098,27 +26215,11 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/edit_commands_impl.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/bioseq_edit_commands.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_edit_commands.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_align_handle.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 153 | auto_ptr m_Sub_I; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/bioseq_edit_commands.hpp:35: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -27150,57 +26251,127 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope_transaction_impl.cpp: In member function 'virtual void ncbi::objects::CScopeTransaction_Impl::Commit()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope_transaction_impl.cpp:167:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 167 | auto_ptr cmd(new CMultEditCommand); - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:53: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_align_handle.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 153 | auto_ptr m_Sub_I; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/seq_annot_edit_commands.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_align_handle.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/edit_commands_impl.hpp:276:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 276 | auto_ptr m_Memeto; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/edit_commands_impl.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_Memeto; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/edit_commands_impl.hpp:367:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 367 | auto_ptr m_Memeto; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/edit_commands_impl.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/seq_entry_edit_commands.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_entry_edit_commands.cpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope_transaction_impl.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 153 | auto_ptr m_Sub_I; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_entry_edit_commands.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:43: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:53: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_assigner.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info_object.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/seq_entry_info.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_assigner.cpp:40: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope_transaction.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:43: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope_transaction.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 153 | auto_ptr m_Sub_I; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:53: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:53: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] @@ -27217,37 +26388,59 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/edit_commands_impl.hpp:276:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 276 | auto_ptr m_Memeto; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/edit_commands_impl.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_Memeto; - | ^~~~~~~~ +are/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_feat_handle.cpp -o seq_feat_handle.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_graph_handle.cpp -o seq_graph_handle.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_align_handle.cpp -o seq_align_handle.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_assigner.cpp -o tse_assigner.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope_transaction.cpp -o scope_transaction.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope_transaction_impl.cpp -o scope_transaction_impl.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncb/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope_transaction_impl.cpp: In member function 'virtual void ncbi::objects::CScopeTransaction_Impl::Commit()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/scope_transaction_impl.cpp:167:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 167 | auto_ptr cmd(new CMultEditCommand); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/edit_commands_impl.hpp:367:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 367 | auto_ptr m_Memeto; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/edit_commands_impl.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/edit_commands_impl.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 153 | auto_ptr m_Sub_I; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/edit_commands_impl.hpp:35: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_assigner.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/edit_commands_impl.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/seq_entry_edit_commands.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_entry_edit_commands.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 153 | auto_ptr m_Sub_I; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info_object.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/seq_entry_info.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_entry_edit_commands.cpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -27260,15 +26453,6 @@ 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/tse_assigner.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; @@ -27276,8 +26460,6 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/seq_annot_edit_commands.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_align_handle.cpp:40: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/edit_commands_impl.hpp:276:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 276 | auto_ptr m_Memeto; | ^~~~~~~~ @@ -27296,6 +26478,22 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_transaction_impl.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/edit_commands_impl.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/bioseq_edit_commands.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_edit_commands.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/priority.hpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 153 | auto_ptr m_Sub_I; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/bioseq_edit_commands.hpp:35: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:53: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] @@ -27362,14 +26560,7 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -i-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/edit_commands_impl.cpp -o edit_commands_impl.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_edit_commands.cpp -o bioseq_edit_commands.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_entry_edit_commands.cpp -o seq_entry_edit_commands.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_set_edit_commands.cpp -o bioseq_set_edit_commands.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/edit_saver.cpp -o edit_saver.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/unsupp_editsaver.cpp -o unsupp_editsaver.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/edits_db_engine.cpp -o edits_db_engine.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg//build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/edit_commands_impl.hpp:276:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/edit_commands_impl.hpp:276:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 276 | auto_ptr m_Memeto; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here @@ -27387,7 +26578,14 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, +i-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/edit_commands_impl.cpp -o edit_commands_impl.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_edit_commands.cpp -o bioseq_edit_commands.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_entry_edit_commands.cpp -o seq_entry_edit_commands.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/bioseq_set_edit_commands.cpp -o bioseq_set_edit_commands.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/edit_saver.cpp -o edit_saver.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/unsupp_editsaver.cpp -o unsupp_editsaver.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/edits_db_engine.cpp -o edits_db_engine.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/scope_impl.hpp:53: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; @@ -27421,6 +26619,36 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_finder.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_finder.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_finder.cpp:35: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split_parser.cpp:33: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/split_parser.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split_parser.cpp:32: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/edits_db_saver.cpp:41: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] @@ -27445,33 +26673,48 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_finder.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id2/id2__.cpp -o id2__.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/id2/id2___.cpp -o id2___.o +/bin/rm -f libid2.so .libid2.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libid2.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC id2__.o id2___.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lseqsplit -lseq -lxser -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libid2.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libid2.so +/bin/ln -f .id2.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.id2.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' +cd objtools/pubseq_gateway/client/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=psg_client UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: *** No rule to make target '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/LIBUV.enabled', needed by 'requirements'. Stop. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' +NOTE: skipping project "psg_client" due to unmet requirements +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_annot_info.cpp:62: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_finder.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/annot_finder.cpp:35: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split_parser.cpp:33: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/split_parser.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split_parser.cpp:32: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -27481,113 +26724,158 @@ /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split_parser.cpp -o split_parser.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/seq_id_sort.cpp -o seq_id_sort.o /bin/rm -f libxobjmgr.so .libxobjmgr.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libxobjmgr.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC seq_table_setters.o seq_table_info.o seq_annot_info.o table_field.o seq_map_switch.o snp_annot_info.o annot_types_ci.o seq_loc_cvt.o annot_selector.o seq_descr_ci.o feat_ci.o graph_ci.o annot_object.o annot_object_index.o annot_ci.o tse_info.o tse_info_object.o seq_entry_info.o bioseq_base_info.o bioseq_set_info.o bioseq_info.o data_source.o priority.o prefetch_impl.o prefetch_manager.o prefetch_manager_impl.o prefetch_actions.o scope.o heap_scope.o scope_impl.o scope_info.o tse_handle.o seq_map.o seq_map_ci.o seq_entry_ci.o seq_annot_ci.o seq_table_ci.o seq_entry_handle.o bioseq_set_handle.o bioseq_handle.o seq_annot_handle.o align_ci.o data_loader.o handle_range.o objmgr_exception.o handle_range_map.o object_manager.o seq_vector.o seq_vector_ci.o seqdesc_ci.o tse_split_info.o tse_chunk_info.o bioseq_ci.o annot_type_index.o seq_loc_mapper.o seq_align_mapper.o annot_collector.o data_loader_factory.o mapped_feat.o seq_feat_handle.o seq_graph_handle.o seq_align_handle.o tse_assigner.o scope_transaction.o scope_transaction_impl.o edit_commands_impl.o bioseq_edit_commands.o seq_entry_edit_commands.o bioseq_set_edit_commands.o edit_saver.o unsupp_editsaver.o edits_db_engine.o edits_db_saver.o annot_finder.o gc_assembly_parser.o split_parser.o seq_id_sort.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lm -lpthread +/usr/bin/g++ -std=gnu++14 -shared -o libxobjmgr.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC seq_table_setters.o seq_table_info.o seq_annot_info.o table_field.o seq_map_switch.o snp_annot_info.o annot_types_ci.o seq_loc_cvt.o annot_selector.o seq_descr_ci.o feat_ci.o graph_ci.o annot_object.o annot_object_index.o annot_ci.o tse_info.o tse_info_object.o seq_entry_info.o bioseq_base_info.o bioseq_set_info.o bioseq_info.o data_source.o priority.o prefetch_impl.o prefetch_manager.o prefetch_manager_impl.o prefetch_actions.o scope.o heap_scope.o scope_impl.o scope_info.o tse_handle.o seq_map.o seq_map_ci.o seq_entry_ci.o seq_annot_ci.o seq_table_ci.o seq_entry_handle.o bioseq_set_handle.o bioseq_handle.o seq_annot_handle.o align_ci.o data_loader.o handle_range.o objmgr_exception.o handle_range_map.o object_manager.o seq_vector.o seq_vector_ci.o seqdesc_ci.o tse_split_info.o tse_chunk_info.o bioseq_ci.o annot_type_index.o seq_loc_mapper.o seq_align_mapper.o annot/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/readfeat.cpp: In member function 'bool ncbi::objects::CFeatureTableReader_Imp::x_AddQualifierToCdregion(ncbi::CRef, ncbi::objects::CSeqFeatData&, EQual, const std::string&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/readfeat.cpp:1406:22: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] + 1406 | } catch( CStringException ) { + | ^~~~~~~~~~~~~~~~ +_collector.o data_loader_factory.o mapped_feat.o seq_feat_handle.o seq_graph_handle.o seq_align_handle.o tse_assigner.o scope_transaction.o scope_transaction_impl.o edit_commands_impl.o bioseq_edit_commands.o seq_entry_edit_commands.o bioseq_set_edit_commands.o edit_saver.o unsupp_editsaver.o edits_db_engine.o edits_db_saver.o annot_finder.o gc_assembly_parser.o split_parser.o seq_id_sort.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lm -lpthread /bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjmgr.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib /bin/ln -f libxobjmgr.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxobjmgr.so /bin/ln -f .xobjmgr.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xobjmgr.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr' -cd objtools/blast/seqdb_reader/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqdb UNIX_PROJ="" sources= configurables=configurables.null -cd objmgr/util/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=util UNIX_PROJ="" sources= configurables=configurables.null -cd algo/dustmask/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xalgodustmask UNIX_PROJ="" sources= configurables=configurables.null -cd objtools/data_loaders/genbank/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xreader UNIX_PROJ="" sources= configurables=configurables.null -cd algo/segmask/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xalgosegmask UNIX_PROJ="" sources= configurables=configurables.null -cd objmgr/split/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=id2_split UNIX_PROJ="" sources= configurables=configurables.null +cd objtools/blast/seqdb_reader/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqdb UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd objmgr/util/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=util UNIX_PROJ="" sources= configurables=configurables.null +cd algo/dustmask/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xalgodustmask UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/util' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/dustmask' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/segmask' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/split' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/util' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd objtools/data_loaders/genbank/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xreader UNIX_PROJ="" sources= configurables=configurables.null make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/dustmask' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/util' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/split' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +cd algo/segmask/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xalgosegmask UNIX_PROJ="" sources= configurables=configurables.null make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/segmask' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/dustmask' +cd objmgr/split/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=id2_split UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/dustmask' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/segmask' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/util' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/split' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/split' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/segmask' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/util' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/split' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/dustmask' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/util' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/dustmask' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/util' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/dustmask' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/dustmask' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader TMPL=seqdb -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util TMPL=util -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/dustmask TMPL=xalgodustmask -w -j21 --jobserver-auth=7,8 all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/segmask' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/segmask' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/split' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/segmask' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/split' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/split' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/segmask' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/dustmask TMPL=xalgodustmask -w -j11 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader TMPL=seqdb -w -j11 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util TMPL=util -w -j11 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split TMPL=id2_split -w -j11 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/segmask TMPL=xalgosegmask -w -j11 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/split' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/blob_splitter.cpp -o blob_splitter.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/blob_splitter_params.cpp -o blob_splitter_params.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/split_blob.cpp -o split_blob.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/blob_splitter_impl.cpp -o blob_splitter_impl.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/blob_splitter_parser.cpp -o blob_splitter_parser.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/blob_splitter_maker.cpp -o blob_splitter_maker.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkmake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdb.cpp -o seqdb.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbbitset.cpp -o seqdbbitset.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbfilter.cpp -o seqdbfilter.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp -o seqdbatlas.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbalias.cpp -o seqdbalias.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp -o seqdbcommon.o -/usr/bin/g++ -std=make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/util' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/split' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/util' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/weight.cpp -o weight.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/sequence.cpp -o sequence.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/feature.cpp -o feature.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/indexer.cpp -o indexer.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/seqtitle.cpp -o seqtitle.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/create_defline.cpp -o create_defline.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILEmake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/dispatcher.cpp -o dispatcher.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader.cpp -o reader.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/writer.cpp -o writer.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/processors.cpp -o processors.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/wgsmaster.cpp -o wgsmaster.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader_snp.cpp -o reader_snp.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader_snp.cpp:33: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 103 | auto_ptr m_Indices; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILEmake[5]: Entering directory 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/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp -o seqdbcommon.o +/usr/bin/g++ -std=/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/segmask TMPL=xalgosegmask -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xreader -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split TMPL=id2_split -w -j21 --jobserver-auth=7,8 all +gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs 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-I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/blob_splitter_impl.cpp -o blob_splitter_impl.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/blob_splitter_parser.cpp -o blob_splitter_parser.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/blob_splitter_maker.cpp -o blob_splitter_maker.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkdpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/seqref.cpp -o seqref.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/blob_id.cpp -o blob_id.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/request_result.cpp -o request_result.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp -o reader_id1_base.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp -o reader_id2_base.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader_service.cpp -o reader_service.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reprg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/id_range.cpp -o id_range.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/object_splitinfo.cpp -o object_splitinfo.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/asn_sizer.cpp -o asn_sizer.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/annot_piece.cpp -o annot_piece.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/chunk_info.cpp -o chunk_info.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/size.cpp -o size.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/blob_id.cpp: In constructor 'ncbi::objects::CBlob_id::CBlob_id(ncbi::CTempString)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/blob_id.cpp:51:12: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] + 51 | catch (CStringException) { + | ^~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader_snp.cpp:33: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 103 | auto_ptr m_Indices; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, @@ -27605,54 +26893,32 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/blob_id.cpp: In constructor 'ncbi::objects::CBlob_id::CBlob_id(ncbi::CTempString)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/blob_id.cpp:51:12: warning: catching polymorphic type 'class ncbi::CStringException' by value [-Wcatch-value=] - 51 | catch (CStringException) { - | ^~~~~~~~~~~~~~~~ -g/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/id_range.cpp -o id_range.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/object_splitinfo.cpp -o object_splitinfo.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/asn_sizer.cpp -o asn_sizer.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/annot_piece.cpp -o annot_piece.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/chunk_info.cpp -o chunk_info.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/size.cpp -o size.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp: In static member function 'static char* ncbi::CSeqDBAtlas::Alloc(size_t, bool)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp:269:16: warning: catching polymorphic type 'class std::bad_alloc' by value [-Wcatch-value=] - 269 | catch(std::bad_alloc) { - | ^~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/dustmask/symdust.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/request_result.cpp:33: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/seqref.cpp -o seqref.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/blob_id.cpp -o blob_id.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/request_result.cpp -o request_result.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp -o reader_id1_base.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp -o reader_id2_base.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader_service.cpp -o reader_service.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reprIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/weight.cpp:36: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/weight.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ @@ -27664,86 +26930,81 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/seq_align_util.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/writer.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/processors.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/seq_align_util.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/rwstream.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/processors.cpp:32: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader_snp.cpp:55: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/processors.hpp:32, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/request_result.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 103 | auto_ptr m_Indices; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:159:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 159 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq ); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:168:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 168 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/dustmask/symdust.cpp:214:6: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 214 | std::auto_ptr< CSymDustMasker::TMaskList > - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/dustmask/symdust.cpp: In member function 'std::auto_ptr > > ncbi::CSymDustMasker::operator()(const sequence_type&, size_type, size_type)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/dustmask/symdust.cpp:218:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 218 | std::auto_ptr< TMaskList > res( new TMaskList ); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/dustmask/symdust.cpp: At global scope: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/dustmask/symdust.cpp:288:6: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 288 | std::auto_ptr< CSymDustMasker::TMaskList > - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 154 | auto_ptr m_Indices; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/dustmask/symdust.cpp: In member function 'void ncbi::CSymDustMasker::GetMaskedLocs(ncbi::objects::CSeq_id&, const sequence_type&, std::vector >&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/dustmask/symdust.cpp:299:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 299 | std::auto_ptr< TMaskList > res = (*this)( seq ); - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/sequence.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader_service.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_param.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader_service.cpp:31: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/dustmask/symdust.cpp: In member function 'ncbi::CRef ncbi::CSymDustMasker::GetMaskedInts(ncbi::objects::CSeq_id&, const sequence_type&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/dustmask/symdust.cpp:313:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 313 | std::auto_ptr< TMaskList > res = (*this)( seq ); - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/iterator.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/sequence.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -27759,83 +27020,34 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbcommon.cpp:1094:52: warning: comparison of integer expressions of different signedness: 'Int4' {aka 'int'} and 'unsigned int' [-Wsign-compare] 1094 | if (((bendp - bbeginp) < 2) || (bbeginp[0] != 0xFFFFFFFF) | ~~~~~~~~~~~^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp: At global scope: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp:88:13: warning: 'void ncbi::s_SeqDB_FileNotFound(const std::string&)' defined but not used [-Wunused-function] - 88 | static void s_SeqDB_FileNotFound(const string & fname) - | ^~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/sequence.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/iterator.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/sequence.cpp:33: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/feature.cpp:38: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/objistr.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/feature.cpp:33: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/wgsmaster.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/wgsmaster.cpp:32: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info_object.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/seq_entry_info.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/wgsmaster.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/processors.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 103 | auto_ptr m_Indices; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader.cpp:31: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 154 | auto_ptr m_Indices; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader.hpp:32: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/segmask/segmask.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/segmask/segmask.cpp:36: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/autodef.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_available_modifier.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -27843,8 +27055,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/bioseq_handle.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/autodef.hpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -27860,9 +27071,10 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/blob_splitter_impl.cpp:47: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/autodef.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_feature_clause_base.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -27870,8 +27082,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/split/blob_splitter_impl.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/blob_splitter_impl.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/autodef.hpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -27887,28 +27098,21 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/seq_loc_util.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/seq_loc_util.cpp:50: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/dispatcher.cpp:31: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/seq_loc_util.cpp:33: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -27923,23 +27127,23 @@ | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/writer.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/processors.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/info_cache.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/rwstream.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/processors.cpp:32: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/info_cache.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/info_cache.cpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp: In member function 'ncbi::CSeqDBIsam::EErrorCode ncbi::CSeqDBIsam::x_StringSearch(const std::string&, std::vector >&, std::vector >&, std::vector&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:972:9: warning: variable 'found_short' set but not used [-Wunused-but-set-variable] + 972 | int found_short(-1); + | ^~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:39: @@ -27951,10 +27155,18 @@ | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/weight.cpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_source_group.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_source_group.cpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -27970,9 +27182,9 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/seqtitle.cpp:62: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_source_desc.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -27980,8 +27192,8 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/iterator.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/seqtitle.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/autodef_source_desc.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_source_desc.cpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -27997,26 +27209,39 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/writer.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/writer.cpp:31: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_available_modifier.cpp: In static member function 'static std::string ncbi::objects::CAutoDefAvailableModifier::GetSubSourceLabel(ncbi::objects::CSubSource_Base::ESubtype)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_available_modifier.cpp:348:14: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] + 348 | } catch (CException) { + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_available_modifier.cpp: In static member function 'static std::string ncbi::objects::CAutoDefAvailableModifier::GetOrgModLabel(ncbi::objects::COrgMod_Base::ESubtype)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_available_modifier.cpp:390:14: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] + 390 | } catch (CException) { + | ^~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 103 | auto_ptr m_Indices; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 154 | auto_ptr m_Indices; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader_snp.cpp:55: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/writer.hpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/feature.cpp:39: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/sequence.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -28035,27 +27260,39 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/blob_splitter_impl.cpp:48: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/create_defline.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/util/strsearch.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader_service.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ @@ -28068,7 +27305,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_param.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader_service.cpp:31: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:32: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -28081,31 +27318,46 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/processors.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 103 | auto_ptr m_Indices; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/seq_loc_util.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/seq_loc_util.cpp:50: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/seq_loc_util.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 154 | auto_ptr m_Indices; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbfile.cpp -o seqdbfile.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbimpl.cpp -o seqdbimpl.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp -o seqdbvol.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbvolset.cpp -o seqdbvolset.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdboidlist.cpp -o seqdboidlist.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp -o seqdbisam.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/shIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/seq_trimmer.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp: In static member function 'static char* ncbi::CSeqDBAtlas::Alloc(size_t, bool)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp:269:16: warning: catching polymorphic type 'class std::bad_alloc' by value [-Wcatch-value=] + 269 | catch(std::bad_alloc) { + | ^~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/objutil.cpp:51: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -28113,7 +27365,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/objutil.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -28131,7 +27383,8 @@ | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/writer.cpp:32: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 103 | auto_ptr m_Indices; | ^~~~~~~~ @@ -28144,74 +27397,35 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp: In member function 'ncbi::CSeqDBIsam::EErrorCode ncbi::CSeqDBIsam::x_StringSearch(const std::string&, std::vector >&, std::vector >&, std::vector&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbisam.cpp:972:9: warning: variable 'found_short' set but not used [-Wunused-but-set-variable] - 972 | int found_short(-1); - | ^~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader.cpp:31: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader.cpp:33: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 103 | auto_ptr m_Indices; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_param.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:32: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 154 | auto_ptr m_Indices; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader.hpp:32: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/bioseqgaps_ci.cpp:35: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/dustmask/symdust.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/request_result.cpp:33: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -28227,13 +27441,17 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/feature_edit.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/feature_edit.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -28246,12 +27464,32 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/sequence.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/segmask/segmask.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/segmask/segmask.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/bioseq_handle.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -28269,31 +27507,16 @@ | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/blob_splitter_maker.cpp:59: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/seqtitle.cpp:62: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/info_cache.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/info_cache.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/info_cache.cpp:34: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/split/blob_splitter_impl.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/blob_splitter_maker.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/iterator.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/seqtitle.cpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -28309,34 +27532,36 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/blob_splitter_maker.cpp:59: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/split/blob_splitter_impl.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/blob_splitter_maker.cpp:35: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/processors.hpp:32, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/request_result.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 103 | auto_ptr m_Indices; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 154 | auto_ptr m_Indices; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/blob_splitter_parser.cpp:69: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/blob_splitter_impl.cpp:47: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -28345,7 +27570,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/split/blob_splitter_impl.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/blob_splitter_parser.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/blob_splitter_impl.cpp:35: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -28361,19 +27586,10 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader_id2_base.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader.cpp:33: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 103 | auto_ptr m_Indices; | ^~~~~~~~ @@ -28386,58 +27602,84 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:159:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 159 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq ); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:168:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 168 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq, + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/weight.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/dispatcher.cpp:31: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/dustmask/symdust.cpp:214:6: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 214 | std::auto_ptr< CSymDustMasker::TMaskList > + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/dustmask/symdust.cpp: In member function 'std::auto_ptr > > ncbi::CSymDustMasker::operator()(const sequence_type&, size_type, size_type)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/dustmask/symdust.cpp:218:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 218 | std::auto_ptr< TMaskList > res( new TMaskList ); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/dustmask/symdust.cpp: At global scope: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/dustmask/symdust.cpp:288:6: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 288 | std::auto_ptr< CSymDustMasker::TMaskList > + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/dustmask/symdust.cpp: In member function 'void ncbi::CSymDustMasker::GetMaskedLocs(ncbi::objects::CSeq_id&, const sequence_type&, std::vector >&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/dustmask/symdust.cpp:299:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 299 | std::auto_ptr< TMaskList > res = (*this)( seq ); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/dustmask/symdust.cpp: In member function 'ncbi::CRef ncbi::CSymDustMasker::GetMaskedInts(ncbi::objects::CSeq_id&, const sequence_type&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/dustmask/symdust.cpp:313:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 313 | std::auto_ptr< TMaskList > res = (*this)( seq ); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/blob_splitter_impl.cpp:48: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/create_defline.cpp:35: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/bioseqgaps_ci.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -28445,8 +27687,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/util/strsearch.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -28462,60 +27703,77 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -are/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbtax.cpp -o seqdbtax.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbgilistset.cpp -o seqdbgilistset.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbexpert.cpp -o seqdbexpert.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbblob.cpp -o seqdbblob.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbcol.cpp -o seqdbcol.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbgimask.cpp -o seqdbgimask.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARG/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/indexer.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/util/unicode.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/indexer.cpp:32: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 103 | auto_ptr m_Indices; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 154 | auto_ptr m_Indices; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp: At global scope: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbatlas.cpp:88:13: warning: 'void ncbi::s_SeqDB_FileNotFound(const std::string&)' defined but not used [-Wunused-function] + 88 | static void s_SeqDB_FileNotFound(const string & fname) + | ^~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/weight.cpp:55: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/autodef.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/autodef.hpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/weight.cpp: In function 'void ncbi::objects::GetProteinWeights(const CBioseq_Handle&, TWeights&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/weight.cpp:363:18: warning: catching polymorphic type 'class ncbi::objects::CObjmgrUtilException' by value [-Wcatch-value=] - 363 | } catch (CObjmgrUtilException) { - | ^~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/seq_trimmer.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -28523,10 +27781,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -28542,85 +27797,62 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/reader_id1_base.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp:32: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/autodef.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_feature_clause.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_param.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp:31: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/autodef.hpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp: In member function 'int ncbi::CSeqDBVol::GetAmbigPartialSeq(int, char**, int, ncbi::ESeqDBAllocType, ncbi::CSeqDB::TSequenceRanges*, ncbi::CSeqDB::TSequenceRanges*) const': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:1540:50: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'int' [-Wsign-compare] - 1540 | if ((*partial_ranges)[num_ranges - 1].second > base_length) { -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp: In member function 'int ncbi::CSeqDBVol::x_GetSequence(int, const char**) const': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:1778:24: warning: comparing the result of pointer addition '((* buffer) + -1)' and NULL [-Waddress] - 1778 | if (! (*buffer - 1)) return -1; - | ~~~~~~~~~^~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp: In member function 'void ncbi::CSeqDBVol::GetRawSeqAndAmbig(int, const char**, int*, int*) const': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:2969:11: warning: variable 'map_end' set but not used [-Wunused-but-set-variable] - 2969 | TIndx map_end = 0; - | ^~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp:33: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 103 | auto_ptr m_Indices; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 154 | auto_ptr m_Indices; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/wgsmaster.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/wgsmaster.cpp:32: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info_object.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/seq_entry_info.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/seq_loc_util.cpp:51: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_feature_clause_base.cpp:40: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/seq_align_util.cpp:42: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/wgsmaster.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ @@ -28633,25 +27865,24 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/seqtitle.cpp:67: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -28673,13 +27904,9 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/seq_loc_util.cpp: In function 'bool ncbi::objects::sequence::BadSeqLocSortOrder(const ncbi::objects::CBioseq_Handle&, const ncbi::objects::CSeq_loc&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/seq_loc_util.cpp:612:14: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] - 612 | } catch (CException) { - | ^~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/indexer.cpp:38: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/blob_splitter_parser.cpp:69: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -28687,8 +27914,8 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/util/unicode.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/indexer.cpp:32: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/split/blob_splitter_impl.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/blob_splitter_parser.cpp:35: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -28706,7 +27933,8 @@ | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/objutil.cpp:51: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/seq_align_util.cpp:41: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -28714,7 +27942,10 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/objutil.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/seq_align_util.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -28737,7 +27968,16 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/objutil.cpp:55: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/seqtitle.cpp:67: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ @@ -28750,84 +27990,59 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/objutil.cpp: In instantiation of 'bool ncbi::objects::{anonymous}::s_IsTagStart(const _T&, const _T&) [with _T = const char*]': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/objutil.cpp:1824:61: required from here -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/objutil.cpp:1752:57: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] - 1752 | for (int possible_str_idx = 0; possible_str_idx < num_possible_tag_starts; ++possible_str_idx) { - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/objutil.cpp:1114:13: warning: 'bool ncbi::objects::s_IsValidAccession(const std::string&)' defined but not used [-Wunused-function] - 1114 | static bool s_IsValidAccession(const string& acc) - | ^~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/feature_edit.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/feature_edit.cpp:33: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/seq_loc_util.cpp:51: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/obj_sniff.cpp -o obj_sniff.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/seq_loc_util.cpp -o seq_loc_util.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/seq_align_util.cpp -o seq_align_util.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/seq_trimmer.cpp -o seq_trimmer.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/bioseqgaps_ci.cpp -o bioseqgaps_ci.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/objutil.cpp -o objutil.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/feature_edit.cpp -o feature_edit.o -/usr/bin/g++ -std=gnu++14 -c -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/autodef.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/autodef.hpp:36: +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/segmask' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/segmask/segmask.cpp -o segmask.o +/bin/rm -f libxalgosegmask.so .libxalgosegmask.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libxalgosegmask.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC segmask.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast -lxobjmgr -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgosegmask.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libxalgosegmask.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxalgosegmask.so +/bin/ln -f .xalgosegmask.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xalgosegmask.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/segmask' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/segmask' +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/weight.cpp:55: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/weight.cpp: In function 'void ncbi::objects::GetProteinWeights(const CBioseq_Handle&, TWeights&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/weight.cpp:363:18: warning: catching polymorphic type 'class ncbi::objects::CObjmgrUtilException' by value [-Wcatch-value=] + 363 | } catch (CObjmgrUtilException) { + | ^~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/seq_loc_util.cpp: In function 'bool ncbi::objects::sequence::BadSeqLocSortOrder(const ncbi::objects::CBioseq_Handle&, const ncbi::objects::CSeq_loc&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/seq_loc_util.cpp:612:14: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] + 612 | } catch (CException) { + | ^~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/objutil.cpp:55: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ @@ -28842,16 +28057,18 @@ | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/autodef.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_feature_clause_base.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_mod_combo.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/autodef.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_mod_combo.cpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -28870,7 +28087,7 @@ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_feature_clause_base.cpp:40: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/seq_align_util.cpp:42: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ @@ -28889,82 +28106,112 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_source_desc.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_mod_combo.cpp: In member function 'bool ncbi::objects::CAutoDefModifierCombo::AddQual(bool, int, bool)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_mod_combo.cpp:1033:10: warning: unused variable 'added' [-Wunused-variable] + 1033 | bool added = false, rval = false; + | ^~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_feature_clause.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/dustmask' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/dustmask/symdust.cpp -o symdust.o +/bin/rm -f libxalgodustmask.so .libxalgodustmask.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libxalgodustmask.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC symdust.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxobjmgr -lseq -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgodustmask.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libxalgodustmask.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxalgodustmask.so +/bin/ln -f .xalgodustmask.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xalgodustmask.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/dustmask' +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/reader_id1_base.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp:32: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/autodef_source_desc.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_source_desc.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_param.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp:31: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/dustmask' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/autodef.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_available_modifier.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/writer.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/writer.cpp:31: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/autodef.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/writer.hpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_available_modifier.cpp: In static member function 'static std::string ncbi::objects::CAutoDefAvailableModifier::GetSubSourceLabel(ncbi::objects::CSubSource_Base::ESubtype)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_available_modifier.cpp:348:14: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] - 348 | } catch (CException) { - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_available_modifier.cpp: In static member function 'static std::string ncbi::objects::CAutoDefAvailableModifier::GetOrgModLabel(ncbi::objects::COrgMod_Base::ESubtype)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_available_modifier.cpp:390:14: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] - 390 | } catch (CException) { - | ^~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_mod_combo.cpp:37: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_mod_combo.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -28980,57 +28227,72 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_mod_combo.cpp: In member function 'bool ncbi::objects::CAutoDefModifierCombo::AddQual(bool, int, bool)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_mod_combo.cpp:1033:10: warning: unused variable 'added' [-Wunused-variable] - 1033 | bool added = false, rval = false; - | ^~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_source_group.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/writer.cpp:32: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 103 | auto_ptr m_Indices; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 154 | auto_ptr m_Indices; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/feature.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_source_group.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/objistr.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/feature.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/objutil.cpp: In instantiation of 'bool ncbi::objects::{anonymous}::s_IsTagStart(const _T&, const _T&) [with _T = const char*]': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/objutil.cpp:1824:61: required from here +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/objutil.cpp:1752:57: warning: comparison of integer expressions of different signedness: 'int' and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] + 1752 | for (int possible_str_idx = 0; possible_str_idx < num_possible_tag_starts; ++possible_str_idx) { + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/reader_id1_base.cpp:33: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 103 | auto_ptr m_Indices; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 154 | auto_ptr m_Indices; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef.cpp -o autodef.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_feature_clause_base.cpp -o autodef_feature_clause_base.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_source_desc.cpp -o autodef_source_desc.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_available_modifier.cpp -o autodef_available_modifier.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_mod_combo.cpp -o autodef_mod_combo.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_source_group.cpp -o autodef_source_group.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/autodef.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_feature_clause.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp: In member function 'int ncbi::CSeqDBVol::GetAmbigPartialSeq(int, char**, int, ncbi::ESeqDBAllocType, ncbi::CSeqDB::TSequenceRanges*, ncbi::CSeqDB::TSequenceRanges*) const': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:1540:50: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'int' [-Wsign-compare] + 1540 | if ((*partial_ranges)[num_ranges - 1].second > base_length) { +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp: In member function 'int ncbi::CSeqDBVol::x_GetSequence(int, const char**) const': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:1778:24: warning: comparing the result of pointer addition '((* buffer) + -1)' and NULL [-Waddress] + 1778 | if (! (*buffer - 1)) return -1; + | ~~~~~~~~~^~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp: In member function 'void ncbi::CSeqDBVol::GetRawSeqAndAmbig(int, const char**, int*, int*) const': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbvol.cpp:2969:11: warning: variable 'map_end' set but not used [-Wunused-but-set-variable] + 2969 | TIndx map_end = 0; + | ^~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/feature.cpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/autodef.hpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -29046,19 +28308,10 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/segmask' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/segmask/segmask.cpp -o segmask.o -/bin/rm -f libxalgosegmask.so .libxalgosegmask.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libxalgosegmask.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC segmask.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast -lxobjmgr -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgosegmask.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libxalgosegmask.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxalgosegmask.so -/bin/ln -f .xalgosegmask.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xalgosegmask.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/segmask' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/segmask' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_feature_clause.cpp:41: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef.cpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ @@ -29077,15 +28330,45 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/dustmask' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/dustmask/symdust.cpp -o symdust.o -/bin/rm -f libxalgodustmask.so .libxalgodustmask.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libxalgodustmask.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC symdust.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxobjmgr -lseq -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgodustmask.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libxalgodustmask.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxalgodustmask.so -/bin/ln -f .xalgodustmask.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xalgodustmask.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/dustmask' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/dustmask' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/processors.cpp: In static member function 'static ncbi::CObjectIStream* ncbi::objects::CProcessor_ID2::x_OpenDataStream(const ncbi::objects::CID2_Reply_Data&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/processors.cpp:1791:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1791 | auto_ptr reader(new COSSReader(data.GetData())); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/processors.cpp:1792:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1792 | auto_ptr stream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/processors.cpp:1815:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1815 | auto_ptr in; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/processors.cpp: In static member function 'static void ncbi::objects::CProcessor_ID2::x_ReadData(const ncbi::objects::CID2_Reply_Data&, const ncbi::CObjectInfo&, size_t&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/processors.cpp:1825:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1825 | auto_ptr in(x_OpenDataStream(data)); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/processors.cpp: In static member function 'static void ncbi::objects::CProcessor_ID2::DumpDataAsText(const ncbi::objects::CID2_Reply_Data&, ncbi::CNcbiOstream&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/processors.cpp:1860:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1860 | auto_ptr in(x_OpenDataStream(data)); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/processors.cpp:1861:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1861 | auto_ptr out(CObjectOStream::Open(eSerial_AsnText, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/create_defline.cpp:54: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, @@ -29115,35 +28398,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/create_defline.cpp:3966:23: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] 3966 | for (int i = 0; i < sizeof (s_tpaPrefixList) / sizeof (const char*); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/indexer.cpp:43: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/indexer.cpp:44: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/indexer.cpp: In function 'int ncbi::objects::SkipMixedContent(const char*)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/indexer.cpp:3599:23: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] - 3599 | for (int i = 0; i < sizeof (mixedTags); i++) { - | ~~^~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/indexer.cpp: In member function 'void ncbi::objects::CWordPairIndexer::PopulateWordPairIndex(std::string)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/indexer.cpp:3676:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'unsigned int'} [-Wsign-compare] - 3676 | for (int i = 0; i < str.length(); i++) { - | ~~^~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/sequence.cpp:89: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, @@ -29193,6 +28447,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/sequence.cpp:4617:22: warning: catching polymorphic type 'class ncbi::objects::CObjmgrUtilException' by value [-Wcatch-value=] 4617 | } catch (CObjmgrUtilException) { | ^~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/objutil.cpp:1114:13: warning: 'bool ncbi::objects::s_IsValidAccession(const std::string&)' defined but not used [-Wunused-function] + 1114 | static bool s_IsValidAccession(const string& acc) + | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/sequence.cpp: In instantiation of 'void ncbi::objects::x_Translate(const Container&, std::string&, int, const CGenetic_code*, bool, bool, bool, bool, bool*) [with Container = std::__cxx11::basic_string; std::string = std::__cxx11::basic_string]': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/sequence.cpp:3957:16: required from here /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/sequence.cpp:3501:43: warning: comparison of integer expressions of different signedness: 'std::__cxx11::basic_string::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] @@ -29201,118 +28458,673 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/sequence.cpp: In instantiation of 'void ncbi::objects::x_Translate(const Container&, std::string&, int, const CGenetic_code*, bool, bool, bool, bool, bool*) [with Container = CSeqVector; std::string = std::__cxx11::basic_string]': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/sequence.cpp:3985:16: required from here /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/sequence.cpp:3501:43: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'int' [-Wsign-compare] -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/processors.cpp: In static member function 'static ncbi::CObjectIStream* ncbi::objects::CProcessor_ID2::x_OpenDataStream(const ncbi::objects::CID2_Reply_Data&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/processors.cpp:1791:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1791 | auto_ptr reader(new COSSReader(data.GetData())); +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/feature.cpp:86: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/processors.cpp:1792:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1792 | auto_ptr stream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/indexer.cpp:43: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/processors.cpp:1815:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1815 | auto_ptr in; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/indexer.cpp:44: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/processors.cpp: In static member function 'static void ncbi::objects::CProcessor_ID2::x_ReadData(const ncbi::objects::CID2_Reply_Data&, const ncbi::CObjectInfo&, size_t&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/processors.cpp:1825:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1825 | auto_ptr in(x_OpenDataStream(data)); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/indexer.cpp: In function 'int ncbi::objects::SkipMixedContent(const char*)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/indexer.cpp:3599:23: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] + 3599 | for (int i = 0; i < sizeof (mixedTags); i++) { + | ~~^~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/indexer.cpp: In member function 'void ncbi::objects::CWordPairIndexer::PopulateWordPairIndex(std::string)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/indexer.cpp:3676:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'unsigned int'} [-Wsign-compare] + 3676 | for (int i = 0; i < str.length(); i++) { + | ~~^~~~~~~~~~~~~~ +In file included from /usr/include/c++/13/algorithm:60, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:180: +In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = ncbi::objects::feature::CFeatTree::CFeatInfo*; _Up = ncbi::objects::feature::CFeatTree::CFeatInfo*; bool _IsMove = false]', + inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = ncbi::objects::feature::CFeatTree::CFeatInfo**; _OI = ncbi::objects::feature::CFeatTree::CFeatInfo**]' at /usr/include/c++/13/bits/stl_algobase.h:506:30, + inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = ncbi::objects::feature::CFeatTree::CFeatInfo**; _OI = ncbi::objects::feature::CFeatTree::CFeatInfo**]' at /usr/include/c++/13/bits/stl_algobase.h:533:42, + inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator >; _OI = ncbi::objects::feature::CFeatTree::CFeatInfo**]' at /usr/include/c++/13/bits/stl_algobase.h:540:31, + inlined from '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator >; _OI = ncbi::objects::feature::CFeatTree::CFeatInfo**]' at /usr/include/c++/13/bits/stl_algobase.h:633:7, + inlined from 'static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = ncbi::objects::feature::CFeatTree::CFeatInfo**]' at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, + inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = ncbi::objects::feature::CFeatTree::CFeatInfo**]' at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, + inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = ncbi::objects::feature::CFeatTree::CFeatInfo**; _Tp = ncbi::objects::feature::CFeatTree::CFeatInfo*]' at /usr/include/c++/13/bits/stl_uninitialized.h:373:37, + inlined from 'void std::vector<_Tp, _Alloc>::_M_range_insert(iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = ncbi::objects::feature::CFeatTree::CFeatInfo*; _Alloc = std::allocator]' at /usr/include/c++/13/bits/vector.tcc:814:38, + inlined from 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; = void; _Tp = ncbi::objects::feature::CFeatTree::CFeatInfo*; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1483:19, + inlined from 'void ncbi::objects::feature::CFeatTree::x_AssignGenes()' at /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/feature.cpp:2911:25: +/usr/include/c++/13/bits/stl_algobase.h:437:30: warning: 'void* __builtin_memmove(void*, const void*, unsigned int)' writing between 5 and 2147483644 bytes into a region of size 0 overflows the destination [-Wstringop-overflow=] + 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/i386-linux-gnu/c++/13/bits/c++allocator.h:33, + from /usr/include/c++/13/bits/allocator.h:46, + from /usr/include/c++/13/string:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:216: +In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = ncbi::objects::feature::CFeatTree::CFeatInfo*]', + inlined from 'static _Tp* std::allocator_traits >::allocate(allocator_type&, size_type) [with _Tp = ncbi::objects::feature::CFeatTree::CFeatInfo*]' at /usr/include/c++/13/bits/alloc_traits.h:482:28, + inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = ncbi::objects::feature::CFeatTree::CFeatInfo*; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:378:33, + inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = ncbi::objects::feature::CFeatTree::CFeatInfo*; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:375:7, + inlined from 'void std::vector<_Tp, _Alloc>::_M_range_insert(iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = ncbi::objects::feature::CFeatTree::CFeatInfo*; _Alloc = std::allocator]' at /usr/include/c++/13/bits/vector.tcc:805:40, + inlined from 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; = void; _Tp = ncbi::objects::feature::CFeatTree::CFeatInfo*; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1483:19, + inlined from 'void ncbi::objects::feature::CFeatTree::x_AssignGenes()' at /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/feature.cpp:2911:25: +/usr/include/c++/13/bits/new_allocator.h:151:55: note: at offset [-2147483648, -1] into destination object of size [4, 2147483644] allocated by 'operator new' + 151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp))); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/seq_trimmer.cpp: In function 'ncbi::objects::CSequenceAmbigTrimmer::TTrimRuleVec* ncbi::objects::{anonymous}::s_DefaultRuleCreator()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/seq_trimmer.cpp:142:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 142 | auto_ptr pTrimRuleVec( new CSequenceAmbigTrimmer::TTrimRuleVec ); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +oducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/incr_time.cpp -o incr_time.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/info_cache.cpp -o info_cache.o +/bin/rm -f libncbi_xreader.a .libncbi_xreader.a.stamp +/bin/rm -f libncbi_xreader.so .libncbi_xreader.so.stamp +ar cr libncbi_xreader.a dispatcher.o reader.o writer.o processors.o wgsmaster.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o +/usr/bin/g++ -std=gnu++14 -shared -o libncbi_xreader.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC dispatcher.o reader.o writer.o processors.o wgsmaster.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lsubmit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader.a /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libncbi_xreader.a /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libncbi_xreader.a +/bin/ln -f .ncbi_xreader-static.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.ncbi_xreader-static.dep +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libncbi_xreader.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libncbi_xreader.so +/bin/ln -f .ncbi_xreader.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.ncbi_xreader.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +cd objtools/data_loaders/genbank/cache/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xreader_cache UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd objtools/data_loaders/genbank/id1/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xreader_id1 UNIX_PROJ="" sources= configurables=configurables.null +cd objtools/data_loaders/genbank/id2/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xreader_id2 UNIX_PROJ="" sources= configurables=configurables.null +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -w -j21 --jobserver-auth=7,8 all +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_param.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:32: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/processors.cpp: In static member function 'static void ncbi::objects::CProcessor_ID2::DumpDataAsText(const ncbi::objects::CID2_Reply_Data&, ncbi::CNcbiOstream&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/processors.cpp:1860:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1860 | auto_ptr in(x_OpenDataStream(data)); +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/reader_id1_base.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/id1/reader_id1.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_param.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp:32: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/processors.cpp:1861:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1861 | auto_ptr out(CObjectOStream::Open(eSerial_AsnText, +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/cache/reader_cache.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:31: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader.hpp:32: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/feature.cpp:86: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/seq_trimmer.cpp: In function 'ncbi::objects::CSequenceAmbigTrimmer::TTrimRuleVec* ncbi::objects::{anonymous}::s_DefaultRuleCreator()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/seq_trimmer.cpp:142:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 142 | auto_ptr pTrimRuleVec( new CSequenceAmbigTrimmer::TTrimRuleVec ); +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/writer.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/cache/writer_cache.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:31: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/writer.hpp:34: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blast/blast__.cpp -o blast__.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blast/blast___.cpp -o blast___.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blast/names.cpp -o names.o +/bin/rm -f libxnetblast.so .libxnetblast.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libxnetblast.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC blast__.o blast___.o names.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lscoremat -lseqset -lseq -lxser -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblast.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libxnetblast.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxnetblast.so +/bin/ln -f .xnetblast.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xnetblast.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' +cd objects/blast/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xnetblastcli UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 103 | auto_ptr m_Indices; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blast_unit_test_util UNIX_PROJ="" sources= configurables=configurables.null +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 154 | auto_ptr m_Indices; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqalign_util UNIX_PROJ="" sources= configurables=configurables.null +cd app/blast/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blast_app_util UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blast TMPL=xnetblastcli -w -j21 --jobserver-auth=7,8 all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 103 | auto_ptr m_Indices; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 103 | auto_ptr m_Indices; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 154 | auto_ptr m_Indices; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 154 | auto_ptr m_Indices; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=seqalign_util -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast TMPL=blast_app_util -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=blast_unit_test_util -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 103 | auto_ptr m_Indices; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 154 | auto_ptr m_Indices; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp: In member function 'virtual void ncbi::objects::CCacheWriter::InitializeCache(ncbi::objects::CReaderCacheManager&, const ncbi::TPluginManagerParamTree*)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:66:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 66 | auto_ptr id_params + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:68:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 68 | auto_ptr blob_params + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp: In member function 'void ncbi::objects::CCacheWriter::WriteSeq_ids(const std::string&, const ncbi::objects::CLoadLockSeqIds&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:336:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 336 | auto_ptr writer | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -EFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp -o seqdbobj.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp -o seqdb_lmdb.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdblmdbset.cpp -o seqdblmdbset.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqidlist_reader.cpp -o seqidlist_reader.o -/bin/rm -f libseqdb.so .libseqdb.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libseqdb.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC seqdb.o seqdbbitset.o seqdbfilter.o seqdbatlas.o seqdbalias.o seqdbcommon.o seqdbfile.o seqdbimpl.o seqdbvol.o seqdbvolset.o seqdboidlist.o seqdbisam.o seqdbtax.o seqdbgilistset.o seqdbexpert.o seqdbblob.o seqdbcol.o seqdbgimask.o seqdbobj.o seqdb_lmdb.o seqdblmdbset.o seqidlist_reader.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblastdb -lxobjmgr -lseq -lgeneral -lxser -lsequtil -lxncbi -llmdb -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqdb.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libseqdb.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libseqdb.so -/bin/ln -f .seqdb.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.seqdb.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' -cd objtools/data_loaders/blastdb/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xloader_blastdb UNIX_PROJ="" sources= configurables=configurables.null -cd objtools/blast/seqdb_writer/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=writedb UNIX_PROJ="" sources= configurables=configurables.null -cd objtools/blast/services/unit_test/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=blast_services_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer TMPL=writedb -w -j11 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -w -j11 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/services/unit_test TMPL=blast_services_unit_test -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb.cpp -o writedb.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp -o writedb_impl.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp -o writedb_volume.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp -o writedb_files.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp -o writedb_isam.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp -o writedb_gIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp: At global scope: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:532:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 532 | auto_ptr m_Writer; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:533:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 533 | auto_ptr m_Stream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp: In function 'ncbi::objects::SCacheInfo::TParams* ncbi::objects::GetCacheParams(const SCacheInfo::TParams*, SCacheInfo::EReaderOrWriter, SCacheInfo::EIdOrBlob)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:1647:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1647 | auto_ptr section + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp: In static member function 'static ncbi::ICache* ncbi::objects::SCacheInfo::CreateCache(const TParams*, EReaderOrWriter, EIdOrBlob)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:1676:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1676 | auto_ptr cache_params + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp: In member function 'virtual void ncbi::objects::CCacheReader::InitializeCache(ncbi::objects::CReaderCacheManager&, const ncbi::TPluginManagerParamTree*)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:1696:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1696 | auto_ptr id_params + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:1698:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1698 | auto_ptr blob_params + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/services/unit_test/blast_services_test.cpp:66: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/test_objmgr.cpp:45: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_app_util.cpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp:61: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -29421,10 +29233,46 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +EFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdbobj.cpp -o seqdbobj.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdb_lmdb.cpp -o seqdb_lmdb.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqdblmdbset.cpp -o seqdblmdbset.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/seqidlist_reader.cpp -o seqidlist_reader.o +/bin/rm -f libseqdb.so .libseqdb.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libseqdb.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC seqdb.o seqdbbitset.o seqdbfilter.o seqdbatlas.o seqdbalias.o seqdbcommon.o seqdbfile.o seqdbimpl.o seqdbvol.o seqdbvolset.o seqdboidlist.o seqdbisam.o seqdbtax.o seqdbgilistset.o seqdbexpert.o seqdbblob.o seqdbcol.o seqdbgimask.o seqdbobj.o seqdb_lmdb.o seqdblmdbset.o seqidlist_reader.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblastdb -lxobjmgr -lseq -lgeneral -lxser -lsequtil -lxncbi -llmdb -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqdb.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libseqdb.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libseqdb.so +/bin/ln -f .seqdb.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.seqdb.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' +cd objtools/data_loaders/blastdb/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xloader_blastdb UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_app_util.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_app_util.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:45: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/blastdb/cached_sequence.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ @@ -29436,9 +29284,38 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blast/blastclient_.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:36: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:56, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:41: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/blastdb/cached_sequence.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ @@ -29452,11 +29329,9 @@ | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_volume.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/test_objmgr.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -29464,11 +29339,10 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_volume.hpp:41: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Na_strand_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Na_strand.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -29486,23 +29360,14 @@ | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_app_util.hpp:40: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/Align_def_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/Align_def.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/seq__.hpp:1, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_general.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:41: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -29526,64 +29391,49 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqalign_cmp.cpp -o seqalign_cmp.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqalign_set_convert.cpp -o seqalign_set_convert.o +/bin/rm -f libseqalign_util.a .libseqalign_util.a.stamp +ar cr libseqalign_util.a seqalign_cmp.o seqalign_set_convert.o +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqalign_util.a /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libseqalign_util.a /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libseqalign_util.a +/bin/ln -f .seqalign_util.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.seqalign_util.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/util/sequtil/sequtil_convert.hpp:34, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -imask.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp -o writedb_convert.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp -o writedb_general.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp -o writedb_column.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp -o mask_info_registry.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp -o taxid_set.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/build_db.cpp -o build_db.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/test_objmgr.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_volume.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_impl.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp:41: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -29599,357 +29449,212 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_column.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_gimask.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp -o reader_id2.o +/bin/rm -f libncbi_xreader_id2.a .libncbi_xreader_id2.a.stamp +/bin/rm -f libncbi_xreader_id2.so .libncbi_xreader_id2.so.stamp +ar cr libncbi_xreader_id2.a reader_id2.o +/usr/bin/g++ -std=gnu++14 -shared -o libncbi_xreader_id2.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC reader_id2.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lsubmit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2.a /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libncbi_xreader_id2.a /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libncbi_xreader_id2.a +/bin/ln -f .ncbi_xreader_id2-static.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.ncbi_xreader_id2-static.dep +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libncbi_xreader_id2.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libncbi_xreader_id2.so +/bin/ln -f .ncbi_xreader_id2.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.ncbi_xreader_id2.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/test_objmgr.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_app_util.hpp:45: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:48, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp:57: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_isam.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blast/blastclient.cpp -o blastclient.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objects/blast/blastclient_.cpp -o blastclient_.o +/bin/rm -f libxnetblastcli.so .libxnetblastcli.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libxnetblastcli.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC blastclient.o blastclient_.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxnetblast -lxconnect -lxser -lxutil -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxnetblastcli.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libxnetblastcli.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxnetblastcli.so +/bin/ln -f .xnetblastcli.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xnetblastcli.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:49: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' +cd objtools/blast/services/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blast_services UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/services TMPL=blast_services -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_app_util.hpp:50: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_volume.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_impl.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp:44: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ - /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/split_exceptions.cpp -o split_exceptions.o -/bin/rm -f libid2_split.so .libid2_split.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libid2_split.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC blob_splitter.o blob_splitter_params.o split_blob.o blob_splitter_impl.o blob_splitter_parser.o blob_splitter_maker.o id_range.o object_splitinfo.o asn_sizer.o annot_piece.o chunk_info.o size.o split_exceptions.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxobjmgr -lseqsplit -lseqset -lseq -lgeneral -lxser -lxcompress -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2_split.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libid2_split.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libid2_split.so -/bin/ln -f .id2_split.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.id2_split.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/split' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/split' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp: In member function 'void ncbi::CWriteDB_IsamIndex::x_AddPdb(int, const ncbi::objects::CSeq_id&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:659:9: warning: unused variable 'len' [-Wunused-variable] - 659 | int len = short_id.size(); - | ^~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/build_db.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbithr_conf.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimtx.hpp:62, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbienv.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/build_db.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/build_db.cpp:44: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/build_db.cpp:45: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_app_util.cpp:44: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/search_strategy.hpp:178:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 178 | auto_ptr m_Data; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/search_strategy.hpp:181:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 181 | auto_ptr m_OptionsBuilder; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_app_util.cpp:49: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/build_db.cpp: In constructor 'ncbi::CFastaBioseqSource::CFastaBioseqSource(ncbi::CNcbiIstream&, bool, bool, bool)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/build_db.cpp:709:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] - 709 | int iflags = CFastaReader::fAllSeqIds | - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here - 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/build_db.cpp:709:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] - 709 | int iflags = CFastaReader::fAllSeqIds | - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here - 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/build_db.cpp:720:33: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] - 720 | iflags |= CFastaReader::fAllSeqIds | CFastaReader::fRequireID; - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here - 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/build_db.cpp:720:33: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] - 720 | iflags |= CFastaReader::fAllSeqIds | CFastaReader::fRequireID; - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here - 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) - | ^~~~~~~~~~ -In file included from /usr/include/c++/13/algorithm:60, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:180: -In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = ncbi::objects::feature::CFeatTree::CFeatInfo*; _Up = ncbi::objects::feature::CFeatTree::CFeatInfo*; bool _IsMove = false]', - inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = ncbi::objects::feature::CFeatTree::CFeatInfo**; _OI = ncbi::objects::feature::CFeatTree::CFeatInfo**]' at /usr/include/c++/13/bits/stl_algobase.h:506:30, - inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = ncbi::objects::feature::CFeatTree::CFeatInfo**; _OI = ncbi::objects::feature::CFeatTree::CFeatInfo**]' at /usr/include/c++/13/bits/stl_algobase.h:533:42, - inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator >; _OI = ncbi::objects::feature::CFeatTree::CFeatInfo**]' at /usr/include/c++/13/bits/stl_algobase.h:540:31, - inlined from '_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator >; _OI = ncbi::objects::feature::CFeatTree::CFeatInfo**]' at /usr/include/c++/13/bits/stl_algobase.h:633:7, - inlined from 'static _ForwardIterator std::__uninitialized_copy::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = ncbi::objects::feature::CFeatTree::CFeatInfo**]' at /usr/include/c++/13/bits/stl_uninitialized.h:147:27, - inlined from '_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = ncbi::objects::feature::CFeatTree::CFeatInfo**]' at /usr/include/c++/13/bits/stl_uninitialized.h:185:15, - inlined from '_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = ncbi::objects::feature::CFeatTree::CFeatInfo**; _Tp = ncbi::objects::feature::CFeatTree::CFeatInfo*]' at /usr/include/c++/13/bits/stl_uninitialized.h:373:37, - inlined from 'void std::vector<_Tp, _Alloc>::_M_range_insert(iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = ncbi::objects::feature::CFeatTree::CFeatInfo*; _Alloc = std::allocator]' at /usr/include/c++/13/bits/vector.tcc:814:38, - inlined from 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; = void; _Tp = ncbi::objects::feature::CFeatTree::CFeatInfo*; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1483:19, - inlined from 'void ncbi::objects::feature::CFeatTree::x_AssignGenes()' at /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/feature.cpp:2911:25: -/usr/include/c++/13/bits/stl_algobase.h:437:30: warning: 'void* __builtin_memmove(void*, const void*, unsigned int)' writing between 5 and 2147483644 bytes into a region of size 0 overflows the destination [-Wstringop-overflow=] - 437 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num); - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/i386-linux-gnu/c++/13/bits/c++allocator.h:33, - from /usr/include/c++/13/bits/allocator.h:46, - from /usr/include/c++/13/string:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:216: -In member function '_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = ncbi::objects::feature::CFeatTree::CFeatInfo*]', - inlined from 'static _Tp* std::allocator_traits >::allocate(allocator_type&, size_type) [with _Tp = ncbi::objects::feature::CFeatTree::CFeatInfo*]' at /usr/include/c++/13/bits/alloc_traits.h:482:28, - inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = ncbi::objects::feature::CFeatTree::CFeatInfo*; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:378:33, - inlined from 'std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = ncbi::objects::feature::CFeatTree::CFeatInfo*; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:375:7, - inlined from 'void std::vector<_Tp, _Alloc>::_M_range_insert(iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = ncbi::objects::feature::CFeatTree::CFeatInfo*; _Alloc = std::allocator]' at /usr/include/c++/13/bits/vector.tcc:805:40, - inlined from 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; = void; _Tp = ncbi::objects::feature::CFeatTree::CFeatInfo*; _Alloc = std::allocator]' at /usr/include/c++/13/bits/stl_vector.h:1483:19, - inlined from 'void ncbi::objects::feature::CFeatTree::x_AssignGenes()' at /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/feature.cpp:2911:25: -/usr/include/c++/13/bits/new_allocator.h:151:55: note: at offset [-2147483648, -1] into destination object of size [4, 2147483644] allocated by 'operator new' - 151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp))); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp: In member function 'void ncbi::CWriteDB_LMDB::x_CommitTransaction()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp:295:55: warning: 'unsigned int ncbi::GetCpuCount()' is deprecated [-Wdeprecated-declarations] - 295 | unsigned int num_threads = GetCpuCount(); - | ~~~~~~~~~~~^~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbifile.hpp:53, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_system.hpp:479:14: note: declared here - 479 | unsigned int GetCpuCount(void) - | ^~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp -o bdbloader.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp -o cached_sequence.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp -o local_blastdb_adapter.o -/bin/rm -f libncbi_xloader_blastdb.so .libncbi_xloader_blastdb.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libncbi_xloader_blastdb.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC bdbloader.o cached_sequence.o local_blastdb_adapter.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lseqdb -lxobjmgr -lseqset -lseq -lxncbi -llmdb -lpthread -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libncbi_xloader_blastdb.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libncbi_xloader_blastdb.so -/bin/ln -f .ncbi_xloader_blastdb.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.ncbi_xloader_blastdb.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -cd objtools/data_loaders/blastdb/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xloader_blastdb_rmt UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -oducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/incr_time.cpp -o incr_time.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/info_cache.cpp -o info_cache.o -/bin/rm -f libncbi_xreader.a .libncbi_xreader.a.stamp -/bin/rm -f libncbi_xreader.so .libncbi_xreader.so.stamp -ar cr libncbi_xreader.a dispatcher.o reader.o writer.o processors.o wgsmaster.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o -/usr/bin/g++ -std=gnu++14 -shared -o libncbi_xreader.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC dispatcher.o reader.o writer.o processors.o wgsmaster.o reader_snp.o seqref.o blob_id.o request_result.o reader_id1_base.o reader_id2_base.o reader_service.o incr_time.o info_cache.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lsubmit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader.a /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libncbi_xreader.a /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libncbi_xreader.a -/bin/ln -f .ncbi_xreader-static.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.ncbi_xreader-static.dep -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libncbi_xreader.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libncbi_xreader.so -/bin/ln -f .ncbi_xreader.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.ncbi_xreader.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -cd objtools/data_loaders/genbank/cache/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xreader_cache UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -cd objtools/data_loaders/genbank/id1/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xreader_id1 UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -cd objtools/data_loaders/genbank/id2/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xreader_id2 UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache TMPL=ncbi_xreader_cache -w -j11 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/id2 TMPL=ncbi_xreader_id2 -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/id1 TMPL=ncbi_xreader_id1 -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader_rmt.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader_rmt.hpp:38: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 449 | auto_ptr m_ConfigFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 450 | auto_ptr m_Reg; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ + /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/split/split_exceptions.cpp -o split_exceptions.o +/bin/rm -f libid2_split.so .libid2_split.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libid2_split.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC blob_splitter.o blob_splitter_params.o split_blob.o blob_splitter_impl.o blob_splitter_parser.o blob_splitter_maker.o id_range.o object_splitinfo.o asn_sizer.o annot_piece.o chunk_info.o size.o split_exceptions.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxobjmgr -lseqsplit -lseqset -lseq -lgeneral -lxser -lxcompress -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libid2_split.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libid2_split.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libid2_split.so +/bin/ln -f .id2_split.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.id2_split.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/split' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/split' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 414 | auto_ptr m_SamFormatter; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp -o reader_id1.o +/bin/rm -f libncbi_xreader_id1.a .libncbi_xreader_id1.a.stamp +/bin/rm -f libncbi_xreader_id1.so .libncbi_xreader_id1.so.stamp +ar cr libncbi_xreader_id1.a reader_id1.o +/usr/bin/g++ -std=gnu++14 -shared -o libncbi_xreader_id1.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC reader_id1.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lsubmit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.a /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libncbi_xreader_id1.a /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libncbi_xreader_id1.a +/bin/ln -f .ncbi_xreader_id1-static.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.ncbi_xreader_id1-static.dep +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libncbi_xreader_id1.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libncbi_xreader_id1.so +/bin/ln -f .ncbi_xreader_id1.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.ncbi_xreader_id1.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' SET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_feature_clause.cpp -o autodef_feature_clause.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objmgr/util/autodef_options.cpp -o autodef_options.o /bin/rm -f libxobjutil.so .libxobjutil.so.stamp @@ -29959,60 +29664,75 @@ /bin/ln -f .xobjutil.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xobjutil.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/util' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/util' -cd objtools/seqmasks_io/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqmasks_io UNIX_PROJ="" sources= configurables=configurables.null -cd algo/blast/dbindex/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xalgoblastdbindex UNIX_PROJ="" sources= configurables=configurables.null -cd objtools/alnmgr/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=alnmgr UNIX_PROJ="" sources= configurables=configurables.null -cd objtools/blast/blastdb_format/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blastdb_format UNIX_PROJ="" sources= configurables=configurables.null -cd objtools/edit/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=edit UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/seqmasks_io' +cd objtools/alnmgr/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=alnmgr UNIX_PROJ="" sources= configurables=configurables.null +cd objtools/blast/blastdb_format/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blastdb_format UNIX_PROJ="" sources= configurables=configurables.null +cd objtools/edit/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=edit UNIX_PROJ="" sources= configurables=configurables.null +cd objtools/blast/gene_info_reader/demo/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=gene_info_reader LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd objtools/blast/seqdb_reader/demo/ && NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=seqdb_demo LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/alnmgr' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd objtools/blast/seqdb_reader/test/ && NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=seqdb_perf LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/edit' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/seqmasks_io' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/alnmgr' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/edit' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/alnmgr' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/alnmgr' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/seqmasks_io' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/edit' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/alnmgr' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/alnmgr' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/edit' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/seqmasks_io' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/seqmasks_io' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/alnmgr' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/edit' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -w -j11 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr TMPL=alnmgr -w -j11 --jobserver-auth=7,8 all -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit TMPL=edit -w -j11 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -w -j11 --jobserver-auth=7,8 all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_app_util.cpp: In function 'void ncbi::CheckMTByQueries_DBSize(CRef&, const blast::CBlastOptions&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_app_util.cpp:1011:18: warning: unused variable 'prog' [-Wunused-variable] + 1011 | EProgram prog = opt.GetProgram(); + | ^~~~ +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr TMPL=alnmgr -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/demo TMPL=seqdb_demo -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/gene_info_reader/demo TMPL=gene_info_reader -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/test TMPL=seqdb_perf -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit TMPL=edit -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format TMPL=blastdb_format -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/alnmgr' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/aln_builders.cpp -o aln_builders.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/aln_converters.cpp -o aln_converters.o @@ -30020,43 +29740,150 @@ /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/aln_seqid.cpp -o aln_seqid.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/aln_serial.cpp -o aln_serial.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alndiag.cpp -o alndiag.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/seqmasks_io' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp -o mask_cmdline_args.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp -o mask_bdb_reader.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp -o mask_fasta_reader.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_writer.cpp -o mask_writer.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp -o mask_writer_fasta.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_writer_int.cpp -o mask_writer_int.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=.make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/edit' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=make[5]: warning: -j21 forced in submake: resetting jobserver mode. +format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmap.cpp -o alnmap.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmapprint.cpp -o alnmapprint.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmatch.cpp -o alnmatch.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmerger.cpp -o alnmerger.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmix.cpp -o alnmix.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnpos_ci.cpp -o alnpos_ci.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnsegments.cpp -o alnsegments.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnseq.cpp -o alnseq.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnvec.cpp -o alnvec.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnvec_iterator.cpp -o alnvec_iterator.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnvecprint.cpp -o alnvecprint.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/pairwise_aln.cpp -o pairwise_aln.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/sparse_aln.cpp -o sparse_aln.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/edit' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/gene_utils.cpp -o gene_utils.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp -o seq_entry_edit.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/promote.cpp -o promote.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/autodef_with_tax.cpp -o autodef_with_tax.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/field_handler.cpp -o field_handler.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/apply_object.cpp -o apply_object.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=fomake[5]: warning: -j11 forced in submake: resetting jobserver mode. -ix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp -o multisource_util.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/criteria.cpp -o criteria.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp -o writedb_lmdb.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/seqidlist_writer.cpp -o seqidlist_writer.o -/bin/rm -f libwritedb.so .libwritedb.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libwritedb.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC writedb.o writedb_impl.o writedb_volume.o writedb_files.o writedb_isam.o writedb_gimask.o writedb_convert.o writedb_general.o writedb_column.o mask_info_registry.o taxid_set.o build_db.o multisource_util.o criteria.o writedb_lmdb.o seqidlist_writer.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lseqdb -lxobjread -lxobjmgr -lblastdb -lseqset -lseq -lgeneral -lxser -lsequtil -lxutil -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libwritedb.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libwritedb.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libwritedb.so -/bin/ln -f .writedb.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.writedb.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' -cd objtools/blast/gene_info_reader/demo/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=gene_info_reader LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/gene_info_reader/demo TMPL=gene_info_reader -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/string_constraint.cpp -o string_constraint.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seqid_guesser.cpp -o seqid_guesser.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/dblink_field.cpp -o dblink_field.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/struc_comm_field.cpp -o struc_comm_field.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/text_desc_field.cpp -o text_desc_field.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/gb_block_field.cpp -o gb_block_field.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/link_cds_mrna.cpp -o link_cds_mrna.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/cds_fix.cpp -o cds_fix.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/loc_edit.cpp -o loc_edit.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/mail_report.cpp -o mail_report.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/feattable_edit.cpp -o feattable_edit.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/gaps_edit.cpp -o gaps_edit.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/source_edit.cpp -o source_edit.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -30167,44 +29994,53 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/reader_id1_base.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/id1/reader_id1.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/test_objmgr.cpp -o test_objmgr.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.cpp -o blast_test_util.o +/bin/rm -f libblast_unit_test_util.a .libblast_unit_test_util.a.stamp +ar cr libblast_unit_test_util.a test_objmgr.o blast_test_util.o +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_unit_test_util.a /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libblast_unit_test_util.a /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libblast_unit_test_util.a +/bin/ln -f .blast_unit_test_util.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.blast_unit_test_util.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_explorer.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnvec_iterator.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnvec_iterator.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_param.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp:32: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnvec_iterator.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/cache/reader_cache.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:31: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnseq.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnsegments.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnsegments.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, @@ -30212,52 +30048,25 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader.hpp:32: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 103 | auto_ptr m_Indices; - | ^~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnsegments.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 154 | auto_ptr m_Indices; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/writer.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/cache/writer_cache.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:31: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, @@ -30265,60 +30074,39 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/writer.hpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex.cpp:38: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blast_services_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/services/unit_test/blast_services_test.cpp -o blast_services_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blast_services_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lblast_services -lxnetblastcli -lxnetblast -lseqdb -lblastdb -lscoremat -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o blast_services_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_services_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f blast_services_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blast_services_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' -cd objtools/blast/seqdb_reader/demo/ && NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=seqdb_demo LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/demo TMPL=seqdb_demo -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 103 | auto_ptr m_Indices; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp: In member function 'virtual void CReadFilesApp::Init()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp:121:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 121 | auto_ptr arg_desc(new CArgDescriptions); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/promote.cpp:45: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/apply_object.cpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -30326,7 +30114,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/promote.cpp:32: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/apply_object.cpp:32: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -30342,14 +30130,12 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 154 | auto_ptr m_Indices; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/apply_object.cpp:39: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_explorer.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmapprint.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -30357,7 +30143,10 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/apply_object.cpp:32: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Dense_seg_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Dense_seg.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -30378,7 +30167,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_explorer.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmapprint.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmap.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -30405,29 +30194,37 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_writer.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmap.cpp: In member function 'ncbi::CRef ncbi::objects::CAlnMap::CreateAlignFromRange(const std::vector&, ncbi::TSignedSeqPos, ncbi::TSignedSeqPos, ESegmentTrimFlag)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmap.cpp:1472:35: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CAlnMap::TNumrow' {aka 'int'} and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] + 1472 | for (TNumrow row = 0; row < selected_rows.size(); row++) { + | ~~~~^~~~~~~~~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp -o reader_cache.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp -o writer_cache.o +/bin/rm -f libncbi_xreader_cache.a .libncbi_xreader_cache.a.stamp +/bin/rm -f libncbi_xreader_cache.so .libncbi_xreader_cache.so.stamp +ar cr libncbi_xreader_cache.a reader_cache.o writer_cache.o +/usr/bin/g++ -std=gnu++14 -shared -o libncbi_xreader_cache.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC reader_cache.o writer_cache.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lsubmit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache.a /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libncbi_xreader_cache.a /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libncbi_xreader_cache.a +/bin/ln -f .ncbi_xreader_cache-static.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.ncbi_xreader_cache-static.dep +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libncbi_xreader_cache.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libncbi_xreader_cache.so +/bin/ln -f .ncbi_xreader_cache.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.ncbi_xreader_cache.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' +cd objtools/data_loaders/genbank/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xloader_genbank UNIX_PROJ="" sources= configurables=configurables.null +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnseq.hpp:216:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 216 | auto_ptr m_Starts; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/Seqdesc_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/Seqdesc.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_writer.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/seqid_comp.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/seqids_extractor.hpp:56, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_tests.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_stats.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_converters.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/aln_converters.cpp:51: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/string_constraint.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/seqid_guesser.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/rna_edit.cpp:33: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -30435,10 +30232,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Dense_seg_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Dense_seg.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/aln_converters.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/rna_edit.cpp:32: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -30454,9 +30248,38 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seqid_guesser.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/string_constraint.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/string_constraint.cpp:33: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/string_constraint.cpp:32: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_explorer.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnvec.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnvec.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -30465,9 +30288,9 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/general/Dbtag_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/general/Dbtag.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seqid_guesser.cpp:31: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Dense_seg_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Dense_seg.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -30485,7 +30308,34 @@ | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/aln_generators.cpp:47: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnseq.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmatch.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmatch.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnseq.hpp:37: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnsegments.cpp: In member function 'void ncbi::objects::CAlnMixSegments::FillUnalignedRegions()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnsegments.cpp:311:27: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 311 | if (plus && prev_start_plus_len < start || + | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_explorer.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnseq.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -30496,7 +30346,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Dense_seg_.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Dense_seg.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/aln_generators.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -30512,27 +30362,128 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnseq.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmatch.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmerger.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmerger.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Seq_align_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Seq_align.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmerger.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/gbnative.cpp:64: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ @@ -30545,12 +30496,123 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/gbloader.cpp:66: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_explorer.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmap.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnvec.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnvecprint.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -30565,13 +30627,6 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seqid_guesser.cpp: In constructor 'ncbi::objects::edit::CSeqIdGuesser::CSeqIdGuesser(ncbi::objects::CSeq_entry_Handle)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seqid_guesser.cpp:92:48: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, EOccurrence, ECase)' is deprecated [-Wdeprecated-declarations] - 92 | size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:5344:11: note: declared here - 5344 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, - | ^~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ @@ -30584,16 +30639,11 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seqid_guesser.cpp: In static member function 'static std::vector > ncbi::objects::edit::CSeqIdGuesser::GetIdStrings(ncbi::objects::CBioseq_Handle)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seqid_guesser.cpp:171:44: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, EOccurrence, ECase)' is deprecated [-Wdeprecated-declarations] - 171 | size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:5344:11: note: declared here - 5344 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, - | ^~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/gbnative.hpp:48, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/gbnative.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, @@ -30603,42 +30653,70 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_param.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/gbnative.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/gbloader.hpp:48, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/gbload_util.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/gbload_util.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/gbload_util.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seqid_guesser.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/general/Dbtag_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/general/Dbtag.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seqid_guesser.cpp:31: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp: In member function 'virtual void CReadFilesApp::Init()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp:121:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 121 | auto_ptr arg_desc(new CArgDescriptions); - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex.cpp:42: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_explorer.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_serial.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/aln_serial.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/pairwise_aln.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_serial.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -30657,12 +30735,20 @@ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/gbnative.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/gbloader.hpp:48, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/gbloader.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, @@ -30672,85 +30758,103 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_param.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:32: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/gbloader.cpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmap.cpp -o alnmap.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmapprint.cpp -o alnmapprint.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmatch.cpp -o alnmatch.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmerger.cpp -o alnmerger.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmix.cpp -o alnmix.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnpos_ci.cpp -o alnpos_ci.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnsegments.cIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnseq.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmatch.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmatch.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp:42: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnseq.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/parse_text_options.cpp: In function 'ncbi::SIZE_TYPE ncbi::objects::edit::FindWithOptions(const std::string&, const std::string&, ncbi::SIZE_TYPE, bool, bool)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/parse_text_options.cpp:47:25: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, EOccurrence, ECase)' is deprecated [-Wdeprecated-declarations] + 47 | pos = NStr::Find(str, pattern, pos, NPOS, NStr::eFirst, str_case); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/parse_text_options.hpp:34, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/parse_text_options.cpp:33: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:5344:11: note: declared here + 5344 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, + | ^~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 103 | auto_ptr m_Indices; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 154 | auto_ptr m_Indices; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/struc_comm_field.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/gbnative.cpp: In member function 'void ncbi::objects::CGBDataLoader_Native::x_CreateDriver(const ncbi::objects::CGBLoaderParams&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/gbnative.cpp:291:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 291 | auto_ptr app_params; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/psg_loader.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/struc_comm_field.cpp:32: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/psg_loader.cpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmap.cpp: In member function 'ncbi::CRef ncbi::objects::CAlnMap::CreateAlignFromRange(const std::vector&, ncbi::TSignedSeqPos, ncbi::TSignedSeqPos, ESegmentTrimFlag)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmap.cpp:1472:35: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CAlnMap::TNumrow' {aka 'int'} and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] - 1472 | for (TNumrow row = 0; row < selected_rows.size(); row++) { - | ~~~~^~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnseq.hpp:216:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 216 | auto_ptr m_Starts; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/autodef.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/autodef_with_tax.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/autodef_with_tax.cpp:33: +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/services/blast_services.cpp -o blast_services.o +/bin/rm -f libblast_services.so .libblast_services.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libblast_services.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC blast_services.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxnetblastcli -lxnetblast -lxser -lxconnect -lxutil -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_services.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libblast_services.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libblast_services.so +/bin/ln -f .blast_services.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.blast_services.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services' +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/seq_loc_util.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/link_cds_mrna.cpp:45: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/source_edit.hpp:34, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/source_edit.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -30758,10 +30862,21 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/autodef_with_tax.hpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqfeat/RNA_ref_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqfeat/RNA_ref.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/link_cds_mrna.cpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/autodef.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/autodef_with_tax.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/autodef_with_tax.cpp:33: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ @@ -30774,25 +30889,31 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/autodef_with_tax.hpp:35: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/source_edit.cpp:32: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -30810,16 +30931,33 @@ | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_writer.cpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/aln_generators.cpp:47: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Dense_seg_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Dense_seg.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/aln_generators.cpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnseq.hpp:216:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 216 | auto_ptr m_Starts; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/text_desc_field.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/text_desc_field.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/text_desc_field.cpp:32: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -30835,22 +30973,22 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnseq.hpp:216:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 216 | auto_ptr m_Starts; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/struc_comm_field.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/struc_comm_field.cpp:32: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -30876,165 +31014,63 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ 199 | strand2 != eNa_strand_minus)) { | ~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/Bioseq_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/Bioseq.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp:33: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/invalid_data_exception.hpp:31, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:34: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/rna_edit.cpp: In member function 'bool ncbi::objects::edit::CFindITSParser::IsLengthTooLarge(const std::string&, int, int, const std::vector&, const std::vector&, const std::vector&, int)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/rna_edit.cpp:259:31: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] + 259 | for (int j = i + 1; j < spans.size(); j++) + | ~~^~~~~~~~~~~~~~ +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services' +cd objtools/blast/services/unit_test/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=blast_services_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/services/unit_test TMPL=blast_services_unit_test -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/string_constraint.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/string_constraint.cpp:33: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 528 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmerger.cpp: In member function 'void ncbi::objects::CAlnMixMerger::x_CreateDenseg()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmerger.cpp:1210:44: warning: comparison of integer expressions of different signedness: 'const unsigned int' and 'int' [-Wsign-compare] - 1210 | if (start_its_i->second->first != -1) { - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/string_constraint.cpp:32: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/gbloader.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] - 94 | objects::CFastaReader::fAllSeqIds | - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here - 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] - 94 | objects::CFastaReader::fAllSeqIds | - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here - 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) - | ^~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=gene_info_reader /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp -o gene_info_reader_app.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie gene_info_reader_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lgene_info -lxobjutil -lseqdb -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -llmdb -lpthread -lm -lpthread -o gene_info_reader -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f gene_info_reader /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f gene_info_reader /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/gene_info_reader -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_explorer.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnpos_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnpos_ci.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 103 | auto_ptr m_Indices; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Dense_seg_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Dense_seg.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 154 | auto_ptr m_Indices; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -cd objtools/blast/seqdb_reader/test/ && NCBI_BUT_EXPENDABLE=' (but expendable)' /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=seqdb_perf LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/test TMPL=seqdb_perf -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/services/unit_test/blast_services_test.cpp:66: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -31143,12 +31179,20 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnseq.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnseq.hpp:216:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 216 | auto_ptr m_Starts; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_explorer.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_serial.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/aln_serial.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnseq.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmatch.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmix.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmix.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -31156,8 +31200,22 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/pairwise_aln.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_serial.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Seq_align_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Seq_align.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmix.hpp:36: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -31166,7 +31224,8 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_explorer.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnseq.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnvec.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/score_builder_base.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -31174,10 +31233,10 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Dense_seg_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Dense_seg.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/score_builder_base.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/score_builder_base.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -31193,25 +31252,35 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seqid_guesser.cpp: In constructor 'ncbi::objects::edit::CSeqIdGuesser::CSeqIdGuesser(ncbi::objects::CSeq_entry_Handle)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seqid_guesser.cpp:92:48: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, EOccurrence, ECase)' is deprecated [-Wdeprecated-declarations] + 92 | size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnseq.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnsegments.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnsegments.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/mail_report.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/mail_report.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:5344:11: note: declared here + 5344 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, + | ^~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnsegments.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/mail_report.cpp:32: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seqid_guesser.cpp: In static member function 'static std::vector > ncbi::objects::edit::CSeqIdGuesser::GetIdStrings(ncbi::objects::CBioseq_Handle)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seqid_guesser.cpp:171:44: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, EOccurrence, ECase)' is deprecated [-Wdeprecated-declarations] + 171 | size_t pos = NStr::Find(tag_str, "/", 0, string::npos, NStr::eLast); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:5344:11: note: declared here + 5344 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, + | ^~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ @@ -31227,49 +31296,74 @@ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/promote.cpp:52: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/score_builder_base.cpp:57: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnseq.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnseq.hpp:216:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 216 | auto_ptr m_Starts; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnseq.hpp:216:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 216 | auto_ptr m_Starts; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnsegments.cpp: In member function 'void ncbi::objects::CAlnMixSegments::FillUnalignedRegions()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnsegments.cpp:311:27: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 311 | if (plus && prev_start_plus_len < start || - | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function 'void ncbi::objects::CAlnVecPrinter::PopsetStyle(int, EAlgorithm)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnvecprint.cpp:136:64: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 136 | if (left_seg < 0 || seg > right_seg && right_seg > 0) { + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function 'void ncbi::objects::CAlnVecPrinter::ClustalStyle(int, EAlgorithm)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnvecprint.cpp:300:64: warning: suggest parentheses around '&&' within '||' [-Wparentheses] + 300 | if (left_seg < 0 || seg > right_seg && right_seg > 0) { + | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/seqid_comp.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/seqids_extractor.hpp:56, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_tests.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_stats.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_converters.hpp:46, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/aln_converters.cpp:51: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Dense_seg_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Dense_seg.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/aln_converters.cpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnseq.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmatch.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmix.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmix.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmerger.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmerger.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -31280,7 +31374,34 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Seq_align_.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Seq_align.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmix.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmerger.hpp:37: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/gap_trim.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/gap_trim.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/gap_trim.cpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -31296,6 +31417,18 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=gene_info_reader /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/gene_info_reader/demo/gene_info_reader_app.cpp -o gene_info_reader_app.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie gene_info_reader_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lgene_info -lxobjutil -lseqdb -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -llmdb -lpthread -lm -lpthread -o gene_info_reader +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f gene_info_reader /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f gene_info_reader /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/gene_info_reader +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnseq.hpp:216:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 216 | auto_ptr m_Starts; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp: In member function 'void CSeqDBPerfApp::x_UpdateMemoryUsage(int)': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:114:23: warning: 'bool ncbi::GetMemoryUsage(size_t*, size_t*, size_t*)' is deprecated [-Wdeprecated-declarations] 114 | if (GetMemoryUsage(&mu.total, &mu.resident, &mu.shared)) { @@ -31304,10 +31437,32 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_system.hpp:511:13: note: declared here 511 | extern bool GetMemoryUsage(size_t* total, size_t* resident, size_t* shared); | ^~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/gap_trim.cpp:44: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp: In member function 'int CSeqDBPerfApp::x_ScanDatabase()': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:153:31: warning: comparison of integer expressions of different signedness: 'ssize_t' {aka 'int'} and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] 153 | for (ssize_t i = 0; i < oids2iterate.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp: In member function 'virtual void CSeqDBPerfApp::Init()': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp:285:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 285 | auto_ptr arg_desc(new CArgDescriptions); @@ -31324,28 +31479,24 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/promote.cpp: In member function 'void ncbi::objects::edit::CPromote::x_PromoteCdregion(ncbi::objects::CSeq_feat&, TRnaMap*) const': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/promote.cpp:224:51: warning: 'static void ncbi::objects::CCdregion_translate::TranslateCdregion(std::string&, const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, bool, bool, bool*, ETranslationLengthProblemOptions)' is deprecated [-Wdeprecated-declarations] - 224 | CCdregion_translate::TranslateCdregion(data, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ - 225 | feat, - | ~~~~~ - 226 | x_Scope(), - | ~~~~~~~~~~ - 227 | include_stop, - | ~~~~~~~~~~~~~ - 228 | remove_trailingX); - | ~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:940:17: note: declared here - 940 | static void TranslateCdregion(string& prot, - | ^~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp:41: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_explorer.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnpos_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnpos_ci.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Dense_seg_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Dense_seg.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -31361,27 +31512,84 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=seqdb_demo /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp -o seqdb_demo.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie seqdb_demo.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o seqdb_demo -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_demo /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f seqdb_demo /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/seqdb_demo -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -cd objtools/blast/seqdb_writer/unit_test/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=writedb_lmdb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test TMPL=writedb_lmdb_unit_test -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnseq.hpp:216:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 216 | auto_ptr m_Starts; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/field_handler.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/field_handler.cpp:32: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/gbloader.cpp -o gbloader.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/gbnative.cpp -o gbnative.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/gbload_util.cpp -o gbload_util.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/psg_loader.cpp -o psg_loader.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp -o psg_loader_impl.o +/bin/rm -f libncbi_xloader_genbank.a .libncbi_xloader_genbank.a.stamp +/bin/rm -f libncbi_xloader_genbank.so .libncbi_xloader_genbank.so.stamp +ar cr libncbi_xloader_genbank.a gbloader.o gbnative.o gbload_util.o psg_loader.o psg_loader_impl.o +/usr/bin/g++ -std=gnu++14 -shared -o libncbi_xloader_genbank.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC gbloader.o gbnative.o gbload_util.o psg_loader.o psg_loader_impl.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lsubmit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -lz -lbz2 -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank.a /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libncbi_xloader_genbank.a /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libncbi_xloader_genbank.a +/bin/ln -f .ncbi_xloader_genbank-static.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.ncbi_xloader_genbank-static.dep +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libncbi_xloader_genbank.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libncbi_xloader_genbank.so +/bin/ln -f .ncbi_xloader_genbank.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.ncbi_xloader_genbank.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' +cd objtools/simple/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xobjsimple UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/simple' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/simple' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/simple' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/simple' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/simple' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/simple TMPL=xobjsimple -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/feattable_edit.cpp:44: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/general/Object_id_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/general/Object_id.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/feattable_edit.cpp:35: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_lmdb_unit_test.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/external_annots.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -31490,22 +31698,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_explorer.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnvec.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnvec.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/cds_fix.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/cds_fix.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -31513,10 +31709,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Dense_seg_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Dense_seg.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/cds_fix.cpp:32: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -31532,6 +31725,33 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/simple/simple_om.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/simple/simple_om.cpp:33: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/seq_id_handle.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/simple/simple_om.hpp:35: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/simple/simple_om.hpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ @@ -31544,471 +31764,27 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/id1/reader_id1.cpp -o reader_id1.o -/bin/rm -f libncbi_xreader_id1.a .libncbi_xreader_id1.a.stamp -ar cr libncbi_xreader_id1.a reader_id1.o -/bin/rm -f libncbi_xreader_id1.so .libncbi_xreader_id1.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libncbi_xreader_id1.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC reader_id1.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lsubmit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.a /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libncbi_xreader_id1.a /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libncbi_xreader_id1.a -/bin/ln -f .ncbi_xreader_id1-static.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.ncbi_xreader_id1-static.dep -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id1.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libncbi_xreader_id1.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libncbi_xreader_id1.so -/bin/ln -f .ncbi_xreader_id1.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.ncbi_xreader_id1.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=seqdb_perf /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp -o seqdb_perf.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie seqdb_perf.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -llmdb -lpthread -lm -lpthread -o seqdb_perf -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_perf /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f seqdb_perf /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/seqdb_perf -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' -cd objtools/blast/seqdb_writer/unit_test/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=writedb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test TMPL=writedb_unit_test -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/criteria_unit_test.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:69: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] - 85 | CSeqFormatterConfig config = CSeqFormatterConfig()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here - 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:96:85: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] - 96 | void DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config = CSeqFormatterConfig()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here - 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:68: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] - 85 | CSeqFormatterConfig config = CSeqFormatterConfig()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here - 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:96:84: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] - 96 | void DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config = CSeqFormatterConfig()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here - 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { - | ^~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:46: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex.cpp:55: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmerger.cpp: In member function 'void ncbi::objects::CAlnMixMerger::x_CreateDenseg()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmerger.cpp:1210:44: warning: comparison of integer expressions of different signedness: 'const unsigned int' and 'int' [-Wsign-compare] + 1210 | if (start_its_i->second->first != -1) { + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/external_annots.cpp:42: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/external_annots.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/external_annots.cpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp: In function 'ncbi::objects::SCacheInfo::TParams* ncbi::objects::GetCacheParams(const SCacheInfo::TParams*, SCacheInfo::EReaderOrWriter, SCacheInfo::EIdOrBlob)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:1647:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1647 | auto_ptr section - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp: In static member function 'static ncbi::ICache* ncbi::objects::SCacheInfo::CreateCache(const TParams*, EReaderOrWriter, EIdOrBlob)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:1676:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1676 | auto_ptr cache_params - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -cd algo/blast/unit_tests/seqdb_reader/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=seqdb_lmdb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader TMPL=seqdb_lmdb_unit_test -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp: In member function 'virtual void ncbi::objects::CCacheReader::InitializeCache(ncbi::objects::CReaderCacheManager&, const ncbi::TPluginManagerParamTree*)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:1696:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1696 | auto_ptr id_params - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp:1698:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1698 | auto_ptr blob_params - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_lmdb_unit_test.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_explorer.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnvec_iterator.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnvec_iterator.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/sparse_aln.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/sparse_aln.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -32016,7 +31792,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnvec_iterator.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/sparse_aln.hpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -32032,39 +31808,9 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:35: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/external_annots.cpp:43: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -32083,24 +31829,28 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blast_services_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/services/unit_test/blast_services_test.cpp -o blast_services_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blast_services_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lblast_services -lxnetblastcli -lxnetblast -lseqdb -lblastdb -lscoremat -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o blast_services_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_services_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f blast_services_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blast_services_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/simple' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/simple/simple_om.cpp -o simple_om.o +/bin/rm -f libxobjsimple.so .libxobjsimple.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libxobjsimple.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC simple_om.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lncbi_xloader_genbank -lxobjmgr -lseq -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjsimple.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libxobjsimple.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxobjsimple.so +/bin/ln -f .xobjsimple.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xobjsimple.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/simple' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/simple' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_explorer.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnvec.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnvecprint.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/feattable_edit.cpp:45: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Dense_seg_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Dense_seg.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -32116,104 +31866,16 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function 'void ncbi::objects::CAlnVecPrinter::PopsetStyle(int, EAlgorithm)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnvecprint.cpp:136:64: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 136 | if (left_seg < 0 || seg > right_seg && right_seg > 0) { - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnvecprint.cpp: In member function 'void ncbi::objects::CAlnVecPrinter::ClustalStyle(int, EAlgorithm)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnvecprint.cpp:300:64: warning: suggest parentheses around '&&' within '||' [-Wparentheses] - 300 | if (left_seg < 0 || seg > right_seg && right_seg > 0) { - | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp: In function 'ncbi::CRef s_GetScope()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:558:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 558 | auto_ptr ois - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp:34: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp: In member function 'void writedb::CBuildDatabase_WGS_gap::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:2825:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2825 | auto_ptr ois - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex.cpp: In function 'const ncbi::blastdbindex::SIndexHeader ncbi::blastdbindex::ReadIndexHeader(void*) [with bool LEGACY = true]': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex.cpp:306:19: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] - 306 | unsigned long tmp; - | ^~~ -pp -o alnsegments.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnseq.cpp -o alnseq.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnvec.cpp -o alnvec.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnvec_iterator.cpp -o alnvec_iterator.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnvecprint.cpp -o alnvecprint.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/pairwise_aln.cpp -o pairwise_aln.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/sparse_aln.cpp -o sparse_aln.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnseq.hpp:216:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 216 | auto_ptr m_Starts; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, +URCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/rna_edit.cpp -o rna_edit.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/remote_updater.cpp -o remote_updater.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/parse_text_options.cpp -o parse_text_options.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/publication_edit.cpp -o publication_edit.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/gap_trim.cpp -o gap_trim.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/external_annots.cpp -o external_annots.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/feature_propagaIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/sparse_aln.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/sparse_aln.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/sparse_aln.hpp:34: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/align_ci.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:45: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/seq_loc_util.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/feature_propagate.cpp:43: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -32221,7 +31883,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:32: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/feature_propagate.cpp:32: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -32240,158 +31902,35 @@ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/sparse_aln.cpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/feature_propagate.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/feature_propagate.cpp:48: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=writedb_lmdb_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_lmdb_unit_test.cpp -o writedb_lmdb_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie writedb_lmdb_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lwritedb -lseqdb -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o writedb_lmdb_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f writedb_lmdb_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f writedb_lmdb_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/writedb_lmdb_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -cd algo/blast/unit_tests/seqdb_reader/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=seqdb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader TMPL=seqdb_unit_test -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/sparse_aln.cpp: In member function 'std::string& ncbi::CSparseAln::GetAlnSeqString(ncbi::IAlnExplorer::TNumrow, std::string&, const ncbi::IAlnExplorer::TSignedRange&, bool) const': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/sparse_aln.cpp:702:46: warning: comparison of integer expressions of different signedness: 'ncbi::COpenRange::position_type' {aka 'int'} and 'size_t' {aka 'unsigned int'} [-Wsign-compare] - 702 | if (translate && aln_range.GetLength() >= trim_from + trim_to) { - | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:51: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/sparse_aln.hpp:40, @@ -32401,38 +31940,15 @@ 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/sparse_ci.hpp:35: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/field_handler.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/field_handler.cpp:32: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -32448,34 +31964,14 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 103 | auto_ptr m_Indices; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 154 | auto_ptr m_Indices; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/seq_loc_util.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alntext.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alntext.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/sparse_ci.hpp:35: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -32491,129 +31987,24 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alntext.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 103 | auto_ptr m_Indices; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/sparse_aln.hpp:38: -In member function 'ncbi::CAlignRangeCollExtender::position_type ncbi::CAlignRangeCollExtender::GetSecondFrom() const [with TColl = ncbi::CAlignRangeCollectionList >]', - inlined from 'ncbi::CRange ncbi::CAlignRangeCollExtender::GetSecondRange() const [with TColl = ncbi::CAlignRangeCollectionList >]' at /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/util/align_range_coll.hpp:1811:68, - inlined from 'void ncbi::CSparseAln::x_Build(const ncbi::CAnchoredAln&)' at /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/sparse_aln.cpp:230:49: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/util/align_range_coll.hpp:1790:16: warning: '*(__vector(1) int*)((char*)&ext + offsetof(ncbi::CAlignRangeCollExtender > >,ncbi::CAlignRangeCollExtender > >::m_From))' may be used uninitialized [-Wmaybe-uninitialized] - 1790 | return m_From; - | ^~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/sparse_aln.cpp: In member function 'void ncbi::CSparseAln::x_Build(const ncbi::CAnchoredAln&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/sparse_aln.cpp:228:46: note: 'ext' declared here - 228 | CAlignRangeCollExtender ext(*m_Aln->GetPairwiseAlns()[row]); - | ^~~ -In member function 'ncbi::CAlignRangeCollExtender::position_type ncbi::CAlignRangeCollExtender::GetSecondFrom() const [with TColl = ncbi::CAlignRangeCollectionList >]', - inlined from 'ncbi::CRange ncbi::CAlignRangeCollExtender::GetSecondRange() const [with TColl = ncbi::CAlignRangeCollectionList >]' at /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/util/align_range_coll.hpp:1811:68, - inlined from 'void ncbi::CSparseAln::x_Build(const ncbi::CAnchoredAln&)' at /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/sparse_aln.cpp:230:49: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/util/align_range_coll.hpp:1790:16: warning: '*(__vector(1) int*)((char*)&ext + offsetof(ncbi::CAlignRangeCollExtender > >,ncbi::CAlignRangeCollExtender > >::m_ToOpen))' may be used uninitialized [-Wmaybe-uninitialized] - 1790 | return m_From; - | ^~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/sparse_aln.cpp: In member function 'void ncbi::CSparseAln::x_Build(const ncbi::CAnchoredAln&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/sparse_aln.cpp:228:46: note: 'ext' declared here - 228 | CAlignRangeCollExtender ext(*m_Aln->GetPairwiseAlns()[row]); - | ^~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 154 | auto_ptr m_Indices; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp:42: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=seqdb_lmdb_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_lmdb_unit_test.cpp -o seqdb_lmdb_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie seqdb_lmdb_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lseqdb -lwritedb -lxobjutil -lblastdb -lxobjread -lvariation -lsubmit -lxlogging -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -lm -lpthread -o seqdb_lmdb_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_lmdb_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f seqdb_lmdb_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/seqdb_lmdb_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/text_desc_field.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/text_desc_field.cpp:41: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/seqid_comp.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/seqids_extractor.hpp:56, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_tests.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_stats.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_builders.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/aln_builders.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/text_desc_field.cpp:32: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:42: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/struc_comm_field.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/struc_comm_field.cpp:47: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:34: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -32629,33 +32020,11 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_explorer.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnvec.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/score_builder_base.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/score_builder_base.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/score_builder_base.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_builders.hpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -32671,47 +32040,24 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/score_builder_base.cpp:57: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/struc_comm_field.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/struc_comm_field.cpp:47: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/invalid_data_exception.hpp:31, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -32729,12 +32075,7 @@ | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/seqid_comp.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/seqids_extractor.hpp:56, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_tests.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_stats.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_builders.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/aln_builders.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/promote.cpp:45: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -32742,7 +32083,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_builders.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/promote.cpp:32: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -32788,81 +32129,45 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/gene_utils.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:36: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:52:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] - 52 | objects::CFastaReader::fAllSeqIds; - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here - 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:52:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] - 52 | objects::CFastaReader::fAllSeqIds; - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here - 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp: In member function 'virtual void ncbi::objects::CCacheWriter::InitializeCache(ncbi::objects::CReaderCacheManager&, const ncbi::TPluginManagerParamTree*)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:66:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 66 | auto_ptr id_params - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:68:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 68 | auto_ptr blob_params - | ^~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/gene_utils.cpp:32: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/field_handler.cpp:43: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp: In member function 'void ncbi::objects::CCacheWriter::WriteSeq_ids(const std::string&, const ncbi::objects::CLoadLockSeqIds&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:336:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 336 | auto_ptr writer - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/blastdb_formatter.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/text_object_description.cpp:48: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/invalid_data_exception.hpp:31, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/text_object_description.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -32878,15 +32183,11 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp: At global scope: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:532:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 532 | auto_ptr m_Writer; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp:533:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 533 | auto_ptr m_Stream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; @@ -32903,14 +32204,18 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=writedb_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp -o writedb_unit_test.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=writedb_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/criteria_unit_test.cpp -o criteria_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie writedb_unit_test.o criteria_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lwritedb -lseqdb -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o writedb_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f writedb_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f writedb_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/writedb_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/text_object_description.cpp:336:15: warning: 'std::string ncbi::objects::edit::GetTextObjectDescription(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, const std::string&)' defined but not used [-Wunused-function] + 336 | static string GetTextObjectDescription(const CSeq_feat& seq_feat, CScope& scope, const string& product) + | ^~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: @@ -32932,44 +32237,34 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:37: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/gene_utils.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:69: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] + 85 | CSeqFormatterConfig config = CSeqFormatterConfig()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here + 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:96:85: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] + 96 | void DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config = CSeqFormatterConfig()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here + 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:68: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] + 85 | CSeqFormatterConfig config = CSeqFormatterConfig()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here + 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:96:84: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] + 96 | void DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config = CSeqFormatterConfig()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here + 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { + | ^~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_edit.cpp:33: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -32977,7 +32272,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/gene_utils.cpp:32: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_edit.cpp:32: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -33002,34 +32297,19 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=seqdb_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp -o seqdb_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie seqdb_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lseqdb -lwritedb -lxobjutil -lblastdb -lxobjread -lvariation -lsubmit -lxlogging -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -lm -lpthread -o seqdb_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f seqdb_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/seqdb_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/feattable_edit.cpp:47: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ @@ -33042,73 +32322,26 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/gb_block_field.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/gb_block_field.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/gb_block_field.cpp:32: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -rmat-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/string_constraint.cpp -o string_constraint.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seqid_guesser.cpp -o seqid_guesser.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/dblink_field.cpp -o dblink_field.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/struc_comm_field.cpp -o struc_comm_field.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/text_desc_field.cpp -o text_desc_field.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/gb_block_field.cpp -o gb_block_field.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-paIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/seq_loc_util.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/link_cds_mrna.cpp:45: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/esearch.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/pub_fix.cpp:63: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/eutils.hpp:198:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 198 | auto_ptr m_Stream; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqfeat/RNA_ref_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqfeat/RNA_ref.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/link_cds_mrna.cpp:37: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/biblio/ArticleId_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/biblio/ArticleId.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/pub_fix.cpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/cds_fix.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/cds_fix.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/loc_edit.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/loc_edit.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -33116,7 +32349,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/cds_fix.cpp:32: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/loc_edit.cpp:32: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -33135,7 +32368,7 @@ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/cds_fix.cpp:53: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/field_handler.cpp:43: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ @@ -33154,23 +32387,10 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/cds_fix.cpp: In function 'bool ncbi::objects::edit::AdjustForCDSPartials(const ncbi::objects::CSeq_feat&, ncbi::objects::CSeq_entry_Handle)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/cds_fix.cpp:457:57: warning: 'bool ncbi::objects::edit::AdjustProteinMolInfoToMatchCDS(ncbi::objects::CMolInfo&, const ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] - 457 | any_change |= AdjustProteinMolInfoToMatchCDS((*it)->SetMolinfo(), cds); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/cds_fix.cpp:366:6: note: declared here - 366 | bool AdjustProteinMolInfoToMatchCDS(CMolInfo& molinfo, const CSeq_feat& cds) - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/cds_fix.cpp:463:39: warning: 'bool ncbi::objects::edit::AdjustProteinMolInfoToMatchCDS(ncbi::objects::CMolInfo&, const ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] - 463 | AdjustProteinMolInfoToMatchCDS(new_molinfo_desc->SetMolinfo(), cds); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/cds_fix.cpp:366:6: note: declared here - 366 | bool AdjustProteinMolInfoToMatchCDS(CMolInfo& molinfo, const CSeq_feat& cds) - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/loc_edit.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/loc_edit.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/gb_block_field.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/gb_block_field.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -33178,7 +32398,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/loc_edit.cpp:32: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/gb_block_field.cpp:32: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -33194,47 +32414,9 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/loc_edit.cpp:57: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/feattable_edit.cpp:44: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/general/Object_id_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/general/Object_id.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/feattable_edit.cpp:35: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/mail_report.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/mail_report.cpp:34: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/align_ci.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:45: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -33242,28 +32424,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/mail_report.cpp:32: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/feattable_edit.cpp:45: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:32: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -33279,7 +32440,6 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/feattable_edit.cpp:47: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ @@ -33295,7 +32455,17 @@ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/mail_report.cpp:49: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/promote.cpp:52: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/sparse_aln.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ @@ -33314,17 +32484,12 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -th/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/link_cds_mrna.cpp -o link_cds_mrna.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/cds_fix.cpp -o cds_fix.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/loc_edit.cpp -o loc_edit.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/mail_report.cpp -o mail_report.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/feattable_edit.cpp -o feattable_edit.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/gaps_edit.cpp -o gaps_edit.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/source_edit.cpp -o source_edit.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/source_edit.hpp:34, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/source_edit.cpp:34: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -33332,10 +32497,31 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/source_edit.cpp:32: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:37: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/sparse_aln.cpp: In member function 'std::string& ncbi::CSparseAln::GetAlnSeqString(ncbi::IAlnExplorer::TNumrow, std::string&, const ncbi::IAlnExplorer::TSignedRange&, bool) const': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/sparse_aln.cpp:702:46: warning: comparison of integer expressions of different signedness: 'ncbi::COpenRange::position_type' {aka 'int'} and 'size_t' {aka 'unsigned int'} [-Wsign-compare] + 702 | if (translate && aln_range.GetLength() >= trim_from + trim_to) { + | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ @@ -33348,11 +32534,60 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/promote.cpp: In member function 'void ncbi::objects::edit::CPromote::x_PromoteCdregion(ncbi::objects::CSeq_feat&, TRnaMap*) const': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/promote.cpp:224:51: warning: 'static void ncbi::objects::CCdregion_translate::TranslateCdregion(std::string&, const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, bool, bool, bool*, ETranslationLengthProblemOptions)' is deprecated [-Wdeprecated-declarations] + 224 | CCdregion_translate::TranslateCdregion(data, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ + 225 | feat, + | ~~~~~ + 226 | x_Scope(), + | ~~~~~~~~~~ + 227 | include_stop, + | ~~~~~~~~~~~~~ + 228 | remove_trailingX); + | ~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:940:17: note: declared here + 940 | static void TranslateCdregion(string& prot, + | ^~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=seqdb_demo /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/demo/seqdb_demo.cpp -o seqdb_demo.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie seqdb_demo.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o seqdb_demo +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_demo /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f seqdb_demo /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/seqdb_demo +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmap.cpp: In member function 'ncbi::objects::CAlnMap::TSegTypeFlags ncbi::objects::CAlnMap::x_SetRawSegType(TNumrow, TNumseg) const': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmap.cpp:152:45: warning: 'l_anchor_index' may be used uninitialized [-Wmaybe-uninitialized] + 152 | anchor_start = m_Starts[anchor_index]; + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmap.cpp:129:19: note: 'l_anchor_index' was declared here + 129 | TNumseg l_anchor_index, r_anchor_index, anchor_index; + | ^~~~~~~~~~~~~~ +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/string_constraint.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/seqid_guesser.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/rna_edit.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/seq_loc_util.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alntext.cpp:40: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -33360,7 +32595,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/rna_edit.cpp:32: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alntext.cpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -33376,20 +32611,6 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/rna_edit.cpp: In member function 'bool ncbi::objects::edit::CFindITSParser::IsLengthTooLarge(const std::string&, int, int, const std::vector&, const std::vector&, const std::vector&, int)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/rna_edit.cpp:259:31: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] - 259 | for (int j = i + 1; j < spans.size(); j++) - | ~~^~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/parse_text_options.cpp: In function 'ncbi::SIZE_TYPE ncbi::objects::edit::FindWithOptions(const std::string&, const std::string&, ncbi::SIZE_TYPE, bool, bool)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/parse_text_options.cpp:47:25: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, EOccurrence, ECase)' is deprecated [-Wdeprecated-declarations] - 47 | pos = NStr::Find(str, pattern, pos, NPOS, NStr::eFirst, str_case); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/parse_text_options.hpp:34, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/parse_text_options.cpp:33: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:5344:11: note: declared here - 5344 | SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, - | ^~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/remote_updater.cpp:59: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/remote_updater.hpp:129:4: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 129 | auto_ptr m_taxClient; @@ -33407,6 +32628,12 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=seqdb_perf /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_reader/test/seqdb_perf.cpp -o seqdb_perf.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie seqdb_perf.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lseqdb -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -llmdb -lpthread -lm -lpthread -o seqdb_perf +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_perf /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f seqdb_perf /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/seqdb_perf +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/remote_updater.cpp:292:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 292 | auto_ptr m_taxon; | ^~~~~~~~ @@ -33426,147 +32653,11 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/remote_updater.cpp:296:6: note: declared here 296 | void CRemoteUpdater::UpdateOrgFromTaxon(FLogger logger, CSeqdesc& obj) | ^~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/external_annots.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/gap_trim.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/gap_trim.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/gap_trim.cpp:34: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/gap_trim.cpp:44: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/loc_edit.cpp:57: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ @@ -33585,38 +32676,29 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmap.cpp: In member function 'ncbi::objects::CAlnMap::TSegTypeFlags ncbi::objects::CAlnMap::x_SetRawSegType(TNumrow, TNumseg) const': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmap.cpp:152:45: warning: 'l_anchor_index' may be used uninitialized [-Wmaybe-uninitialized] - 152 | anchor_start = m_Starts[anchor_index]; - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmap.cpp:129:19: note: 'l_anchor_index' was declared here - 129 | TNumseg l_anchor_index, r_anchor_index, anchor_index; - | ^~~~~~~~~~~~~~ -URCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/rna_edit.cpp -o rna_edit.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/remote_updater.cpp -o remote_updater.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/parse_text_options.cpp -o parse_text_options.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/publication_edit.cpp -o publication_edit.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/gap_trim.cpp -o gap_trim.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/external_annots.cpp -o external_annots.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/feature_propagaIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/external_annots.cpp:42: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/external_annots.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/external_annots.cpp:34: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/external_annots.cpp:43: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_app_util.cpp: At global scope: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_app_util.cpp:127:15: warning: 'std::string ncbi::s_FindBlastDbDataLoaderName(const std::string&, bool)' defined but not used [-Wunused-function] + 127 | static string s_FindBlastDbDataLoaderName(const string& dbname, bool is_protein) + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/blastdb_formatter.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/invalid_data_exception.hpp:31, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp:35: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -33632,38 +32714,38 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/seq_loc_util.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/feature_propagate.cpp:43: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmerger.cpp: In member function 'void ncbi::objects::CAlnMixMerger::x_Merge()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmerger.cpp:691:40: warning: 'second_row_fits' may be used uninitialized [-Wmaybe-uninitialized] + 691 | second_row_fits != eIgnoreMatch) { + | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmerger.cpp:155:20: note: 'second_row_fits' was declared here + 155 | TSecondRowFits second_row_fits; + | ^~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/feature_propagate.cpp:32: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/edit/feature_propagate.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/feature_propagate.cpp:48: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/mail_report.cpp:49: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ @@ -33682,36 +32764,75 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/text_object_description.cpp:48: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:49:74: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] + 49 | CSeqFormatterConfig config /* = CSeqFormatterConfig() */) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here + 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:270:72: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] + 270 | void CSeqFormatter::DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here + 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { + | ^~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/sparse_aln.hpp:38: +In member function 'ncbi::CAlignRangeCollExtender::position_type ncbi::CAlignRangeCollExtender::GetSecondFrom() const [with TColl = ncbi::CAlignRangeCollectionList >]', + inlined from 'ncbi::CRange ncbi::CAlignRangeCollExtender::GetSecondRange() const [with TColl = ncbi::CAlignRangeCollectionList >]' at /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/util/align_range_coll.hpp:1811:68, + inlined from 'void ncbi::CSparseAln::x_Build(const ncbi::CAnchoredAln&)' at /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/sparse_aln.cpp:230:49: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/util/align_range_coll.hpp:1790:16: warning: '*(__vector(1) int*)((char*)&ext + offsetof(ncbi::CAlignRangeCollExtender > >,ncbi::CAlignRangeCollExtender > >::m_From))' may be used uninitialized [-Wmaybe-uninitialized] + 1790 | return m_From; + | ^~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/sparse_aln.cpp: In member function 'void ncbi::CSparseAln::x_Build(const ncbi::CAnchoredAln&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/sparse_aln.cpp:228:46: note: 'ext' declared here + 228 | CAlignRangeCollExtender ext(*m_Aln->GetPairwiseAlns()[row]); + | ^~~ +In member function 'ncbi::CAlignRangeCollExtender::position_type ncbi::CAlignRangeCollExtender::GetSecondFrom() const [with TColl = ncbi::CAlignRangeCollectionList >]', + inlined from 'ncbi::CRange ncbi::CAlignRangeCollExtender::GetSecondRange() const [with TColl = ncbi::CAlignRangeCollectionList >]' at /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/util/align_range_coll.hpp:1811:68, + inlined from 'void ncbi::CSparseAln::x_Build(const ncbi::CAnchoredAln&)' at /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/sparse_aln.cpp:230:49: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/util/align_range_coll.hpp:1790:16: warning: '*(__vector(1) int*)((char*)&ext + offsetof(ncbi::CAlignRangeCollExtender > >,ncbi::CAlignRangeCollExtender > >::m_ToOpen))' may be used uninitialized [-Wmaybe-uninitialized] + 1790 | return m_From; + | ^~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/sparse_aln.cpp: In member function 'void ncbi::CSparseAln::x_Build(const ncbi::CAnchoredAln&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/sparse_aln.cpp:228:46: note: 'ext' declared here + 228 | CAlignRangeCollExtender ext(*m_Aln->GetPairwiseAlns()[row]); + | ^~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alntext.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/text_object_description.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/cds_fix.cpp:53: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:57: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ @@ -33730,195 +32851,113 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/text_object_description.cpp:336:15: warning: 'std::string ncbi::objects::edit::GetTextObjectDescription(const ncbi::objects::CSeq_feat&, ncbi::objects::CScope&, const std::string&)' defined but not used [-Wunused-function] - 336 | static string GetTextObjectDescription(const CSeq_feat& seq_feat, CScope& scope, const string& product) - | ^~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_edit.cpp:33: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_edit.cpp:32: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/cds_fix.cpp: In function 'bool ncbi::objects::edit::AdjustForCDSPartials(const ncbi::objects::CSeq_feat&, ncbi::objects::CSeq_entry_Handle)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/cds_fix.cpp:457:57: warning: 'bool ncbi::objects::edit::AdjustProteinMolInfoToMatchCDS(ncbi::objects::CMolInfo&, const ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] + 457 | any_change |= AdjustProteinMolInfoToMatchCDS((*it)->SetMolinfo(), cds); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/cds_fix.cpp:366:6: note: declared here + 366 | bool AdjustProteinMolInfoToMatchCDS(CMolInfo& molinfo, const CSeq_feat& cds) + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/cds_fix.cpp:463:39: warning: 'bool ncbi::objects::edit::AdjustProteinMolInfoToMatchCDS(ncbi::objects::CMolInfo&, const ncbi::objects::CSeq_feat&)' is deprecated [-Wdeprecated-declarations] + 463 | AdjustProteinMolInfoToMatchCDS(new_molinfo_desc->SetMolinfo(), cds); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/cds_fix.cpp:366:6: note: declared here + 366 | bool AdjustProteinMolInfoToMatchCDS(CMolInfo& molinfo, const CSeq_feat& cds) + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/esearch.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/pub_fix.cpp:63: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/eutils/api/eutils.hpp:198:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 198 | auto_ptr m_Stream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/biblio/ArticleId_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/biblio/ArticleId.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/pub_fix.cpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp -o bdbloader_rmt.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp -o remote_blastdb_adapter.o -/bin/rm -f libncbi_xloader_blastdb_rmt.so .libncbi_xloader_blastdb_rmt.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libncbi_xloader_blastdb_rmt.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC bdbloader_rmt.o remote_blastdb_adapter.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lncbi_xloader_blastdb -lblast_services -lxobjmgr -lseq -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb_rmt.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libncbi_xloader_blastdb_rmt.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libncbi_xloader_blastdb_rmt.so -/bin/ln -f .ncbi_xloader_blastdb_rmt.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.ncbi_xloader_blastdb_rmt.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' - -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp -o mask_writer_tab.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp -o mask_writer_seqloc.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp -o mask_writer_blastdb_maskinfo.o -/bin/rm -f libseqmasks_io.so .libseqmasks_io.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libseqmasks_io.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC mask_cmdline_args.o mask_bdb_reader.o mask_fasta_reader.o mask_writer.o mask_writer_fasta.o mask_writer_int.o mask_writer_tab.o mask_writer_seqloc.o mask_writer_blastdb_maskinfo.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lseqdb -lxobjread -lxobjutil -lxobjmgr -lblastdb -lseqset -lseq -lxser -lxncbi -llmdb -lpthread -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqmasks_io.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libseqmasks_io.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libseqmasks_io.so -/bin/ln -f .seqmasks_io.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.seqmasks_io.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/seqmasks_io' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/seqmasks_io' -cd algo/winmask/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xalgowinmask UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/winmask' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/winmask' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/winmask' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/winmask' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/winmask' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask TMPL=xalgowinmask -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/winmask' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker.cpp -o seq_masker.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_score_mean.cpp -o seq_masker_score_mean.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp -o seq_masker_score_mean_glob.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_score_min.cpp -o seq_masker_score_min.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_util.cpp -o seq_masker_util.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_window.cpp -o seq_masker_window.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_ostat.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat_ascii.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_ostat_factory.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp: In member function 'void ncbi::objects::edit::{anonymous}::CSeqdescSortMap::Init()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:173:47: warning: comparison of integer expressions of different signedness: 'char' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] + 173 | if (descr_insert_order[index] >= size()) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'void ncbi::objects::edit::ConvertRawToDeltaByNs(ncbi::objects::CSeq_inst&, size_t, int, size_t, int, bool, int, int, int)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:1854:71: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] + 1854 | if (n_len >= min_unknown && (max_unknown < 0 || n_len <= max_unknown)) { + | ~~~~~~^~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:1856:74: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] + 1856 | } else if (n_len >= min_known && (max_known < 0 || n_len <= max_known)) { + | ~~~~~~^~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:1879:63: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] + 1879 | if (n_len >= min_unknown && (max_unknown < 0 || n_len <= max_unknown)) { + | ~~~~~~^~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:1881:66: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] + 1881 | } else if (n_len >= min_known && (max_known < 0 || n_len <= max_known)) { + | ~~~~~~^~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'void ncbi::objects::edit::TrimSeqData(ncbi::objects::CBioseq_Handle, ncbi::CRef, const TCuts&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:2481:16: warning: enumeration value 'eSeqSubMap' not handled in switch [-Wswitch] + 2481 | switch (seqmap_ci.GetType()) { + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:2481:16: warning: enumeration value 'eSeqRef' not handled in switch [-Wswitch] +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:2481:16: warning: enumeration value 'eSeqEnd' not handled in switch [-Wswitch] +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:2481:16: warning: enumeration value 'eSeqChunk' not handled in switch [-Wswitch] +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:2481:16: warning: enumeration value 'eSeqLiteral' not handled in switch [-Wswitch] +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'bool ncbi::objects::edit::s_FindSegment(const ncbi::objects::CDense_seg&, ncbi::objects::CDense_seg_Base::TDim, ncbi::TSeqPos, ncbi::objects::CDense_seg_Base::TNumseg&, ncbi::TSeqPos&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:2839:21: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'ncbi::TSignedSeqPos' {aka 'int'} [-Wsign-compare] + 2839 | if (pos >= start && pos < start + len) { + | ~~~~^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:2839:39: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'ncbi::TSignedSeqPos' {aka 'int'} [-Wsign-compare] + 2839 | if (pos >= start && pos < start + len) { + | ~~~~^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'void ncbi::objects::edit::TrimSeqAlign(ncbi::objects::CBioseq_Handle, ncbi::CRef, const TCuts&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:3043:32: warning: comparison of integer expressions of different signedness: 'ncbi::TSignedSeqPos' {aka 'int'} and 'ncbi::TSeqPos' {aka 'unsigned int'} [-Wsign-compare] + 3043 | else if (seg_start < cut_from) { + | ~~~~~~~~~~^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:3046:32: warning: comparison of integer expressions of different signedness: 'ncbi::TSignedSeqPos' {aka 'int'} and 'ncbi::TSeqPos' {aka 'unsigned int'} [-Wsign-compare] + 3046 | else if (seg_start >= cut_from && + | ~~~~~~~~~~^~~~~~~~~~~ +Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/sparse_ci.cpp -o sparse_ci.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alntext.cpp -o alntext.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/score_builder_base.cpp -o score_builder_base.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/aln_container.cpp -o aln_container.o +/bin/rm -f libxalnmgr.so .libxalnmgr.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libxalnmgr.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC aln_builders.o aln_converters.o aln_generators.o aln_seqid.o aln_serial.o alndiag.o alnmap.o alnmapprint.o alnmatch.o alnmerger.o alnmix.o alnpos_ci.o alnsegments.o alnseq.o alnvec.o alnvec_iterator.o alnvecprint.o pairwise_aln.o sparse_aln.o sparse_ci.o alntext.o score_builder_base.o aln_container.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxobjutil -lxobjmgr -lseqset -lseq -lxser -ltables -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalnmgr.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libxalnmgr.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxalnmgr.so +/bin/ln -f .xalnmgr.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xalnmgr.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/alnmgr' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/alnmgr' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/seq_writer.cpp -o seq_writer.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp -o blastdb_dataextract.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp -o blastdb_formatter.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp -o seq_formatter.o +/bin/rm -f libblastdb_format.so .libblastdb_format.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libblastdb_format.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC seq_writer.o blastdb_dataextract.o blastdb_formatter.o seq_formatter.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lseqdb -lxobjutil -lxobjmgr -lseq -lxser -lsequtil -lxutil -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb_format.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libblastdb_format.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libblastdb_format.so +/bin/ln -f .blastdb_format.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.blastdb_format.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' +cd objtools/blast/blastdb_format/unit_test/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=blastdb_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test TMPL=blastdb_format_unit_test -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_score.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_score_mean.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker.cpp:41: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_formatter_unit_test.cpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -33937,27 +32976,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -33973,152 +32991,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_score.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_score_mean_glob.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -34137,86 +33012,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_score.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_score_min.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_score_min.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -34235,98 +33030,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_score.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_score_mean.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_score_mean.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -34345,115 +33048,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window_pattern.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_window_pattern.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_util.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_window_pattern.cpp:36: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat_ascii.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -34472,144 +33066,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -g/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_window_ambig.cpp -o seq_masker_window_ambig.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_window_pattern.cpp -o seq_masker_window_pattern.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp -o seq_masker_window_pattern_ambig.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_ostat_factory.cpp -o seq_masker_ostat_factory.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_ostat.cpp -o seq_masker_ostat.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp -o seq_masker_ostat_ascii.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REEIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:37: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_window.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:36: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_istat_ascii.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ @@ -34623,12 +33081,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ + | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -34647,6 +33102,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -34662,55 +33120,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_istat_factory.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -34723,12 +33132,15 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -34741,12 +33153,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -34759,15 +33168,37 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window_ambig.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_window_ambig.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/blastdb/bdbloader.cpp -o bdbloader.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/blastdb/cached_sequence.cpp -o cached_sequence.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/blastdb/local_blastdb_adapter.cpp -o local_blastdb_adapter.o +/bin/rm -f libncbi_xloader_blastdb.so .libncbi_xloader_blastdb.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libncbi_xloader_blastdb.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC bdbloader.o cached_sequence.o local_blastdb_adapter.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lseqdb -lxobjmgr -lseqset -lseq -lxncbi -llmdb -lpthread -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libncbi_xloader_blastdb.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libncbi_xloader_blastdb.so +/bin/ln -f .ncbi_xloader_blastdb.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.ncbi_xloader_blastdb.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +cd objtools/data_loaders/blastdb/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xloader_blastdb_rmt UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/blastdb TMPL=ncbi_xloader_blastdb_rmt -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -34777,7 +33208,10 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -34793,13 +33227,12 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window_pattern.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window_pattern_ambig.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp:37: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_formatter_unit_test.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -34807,8 +33240,12 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_util.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -34824,106 +33261,320 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_score_min.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/mod_error.cpp -o mod_error.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/descr_mod_apply.cpp -o descr_mod_apply.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/feature_mod_apply.cpp -o feature_mod_apply.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/mod_to_enum.cpp -o mod_to_enum.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/message_listener.cpp -o message_listener.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/readers/line_error.cpp -o line_error.o +/bin/rm -f libxobjread.so .libxobjread.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libxobjread.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader_rmt.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader_rmt.hpp:38: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_score_mean.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:69: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] + 85 | CSeqFormatterConfig config = CSeqFormatterConfig()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here + 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:96:85: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] + 96 | void DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config = CSeqFormatterConfig()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here + 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:68: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] + 85 | CSeqFormatterConfig config = CSeqFormatterConfig()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here + 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:96:84: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] + 96 | void DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config = CSeqFormatterConfig()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here + 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function 'void seq_writer::TestNoFormatSpecifier::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:54:41: warning: 'CSeqFormatter' is deprecated [-Wdeprecated-declarations] + 54 | BOOST_REQUIRE_THROW(CSeqFormatter f(format_spec, db, std::cout), + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:124:9: note: in definition of macro 'BOOST_CHECK_THROW_IMPL_EX' + 124 | S; \ + | ^ +/usr/include/boost/test/tools/old/interface.hpp:120:45: note: in expansion of macro 'BOOST_CHECK_THROW_IMPL' + 120 | #define BOOST_REQUIRE_THROW( S, E ) BOOST_CHECK_THROW_IMPL( S, E, true, "", REQUIRE ) + | ^~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here + 77 | class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function 'void seq_writer::TestInvalidFormatSpecifiers_Empty::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:122:57: warning: 'CSeqFormatter' is deprecated [-Wdeprecated-declarations] + 122 | #define NcbiEmptyString NCBI_NS_NCBI::CNcbiEmptyString::Get() + | ^~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:124:9: note: in definition of macro 'BOOST_CHECK_THROW_IMPL_EX' + 124 | S; \ + | ^ +/usr/include/boost/test/tools/old/interface.hpp:120:45: note: in expansion of macro 'BOOST_CHECK_THROW_IMPL' + 120 | #define BOOST_REQUIRE_THROW( S, E ) BOOST_CHECK_THROW_IMPL( S, E, true, "", REQUIRE ) + | ^~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:123:19: note: in expansion of macro 'NcbiEmptyString' + 123 | #define kEmptyStr NcbiEmptyString + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:61:41: note: in expansion of macro 'kEmptyStr' + 61 | BOOST_REQUIRE_THROW(CSeqFormatter f(kEmptyStr, db, std::cout), + | ^~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here + 77 | class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function 'void seq_writer::TestInvalidFormatSpecifiers_InvalidAlgoId::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:68:25: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] + 68 | CSeqFormatterConfig config; + | ^~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here + 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:70:40: warning: 'CSeqFormatter' is deprecated [-Wdeprecated-declarations] + 70 | BOOST_REQUIRE_THROW(CSeqFormatter f("%m", db, std::cout, config), + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:124:9: note: in definition of macro 'BOOST_CHECK_THROW_IMPL_EX' + 124 | S; \ + | ^ +/usr/include/boost/test/tools/old/interface.hpp:120:45: note: in expansion of macro 'BOOST_CHECK_THROW_IMPL' + 120 | #define BOOST_REQUIRE_THROW( S, E ) BOOST_CHECK_THROW_IMPL( S, E, true, "", REQUIRE ) + | ^~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here + 77 | class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function 'void seq_writer::TestValidFormatSpecifiers::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:77:25: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] + 77 | CSeqFormatterConfig config; + | ^~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here + 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:93:24: warning: 'CSeqFormatter' is deprecated [-Wdeprecated-declarations] + 93 | CSeqFormatter f(*itr, db, std::cout, config); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here + 77 | class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:97:20: warning: 'CSeqFormatter' is deprecated [-Wdeprecated-declarations] + 97 | CSeqFormatter f("%m", db, std::cout, config); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here + 77 | class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function 'void seq_writer::TestRequestGiOidLength::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:108:21: warning: 'CSeqFormatter' is deprecated [-Wdeprecated-declarations] + 108 | CSeqFormatter f(format_spec, db, out); + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here + 77 | class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function 'void seq_writer::TestRequestSeqId::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:150:21: warning: 'CSeqFormatter' is deprecated [-Wdeprecated-declarations] + 150 | CSeqFormatter f(format_spec, db, out); + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here + 77 | class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function 'void seq_writer::TestRequestSeqIdLong::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:194:21: warning: 'CSeqFormatter' is deprecated [-Wdeprecated-declarations] + 194 | CSeqFormatter f(format_spec, db, out); + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here + 77 | class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function 'void seq_writer::TestRequestAccessionPIGTaxidTitle::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:227:21: warning: 'CSeqFormatter' is deprecated [-Wdeprecated-declarations] + 227 | CSeqFormatter f(format_spec, db, out); + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here + 77 | class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function 'void seq_writer::TestRequestGiGivenPIG::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:258:21: warning: 'CSeqFormatter' is deprecated [-Wdeprecated-declarations] + 258 | CSeqFormatter f(format_spec, db, out); + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here + 77 | class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function 'void seq_writer::TestRequestSequenceDataLength::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:283:21: warning: 'CSeqFormatter' is deprecated [-Wdeprecated-declarations] + 283 | CSeqFormatter f(format_spec, db, out); + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here + 77 | class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function 'void seq_writer::TestMaskedFasta::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:313:25: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] + 313 | CSeqFormatterConfig config; + | ^~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here + 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:318:21: warning: 'CSeqFormatter' is deprecated [-Wdeprecated-declarations] + 318 | CSeqFormatter f(format_spec, db, out, config); + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here + 77 | class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function 'void seq_writer::TestMaskedSequenceData::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:357:25: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] + 357 | CSeqFormatterConfig config; + | ^~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here + 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:360:21: warning: 'CSeqFormatter' is deprecated [-Wdeprecated-declarations] + 360 | CSeqFormatter f(format_spec, db, out, config); + | ^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here + 77 | class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter + | ^~~~~~~~~~~~~ +openmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC reader_message.o reader_listener.o reader_message_handler.o read_util.o format_guess_ex.o seqid_validate.o acc_pattern.o agp_read.o agp_seq_entry.o agp_util.o agp_validate_reader.o cigar.o fasta.o aln_formats.o alnread.o aln_errors.o aln_error_reporter.o aln_formatguess.o aln_util.o aln_reader.o aln_scanner.o aln_scanner_fastagap.o aln_scanner_clustal.o aln_scanner_nexus.o aln_scanner_phylip.o aln_scanner_sequin.o aln_scanner_multalign.o fasta_aln_builder.o fasta_reader_utils.o getfeature.o gff_reader.o track_data.o reader_data.o microarray_reader.o phrap.o reader_base.o readfeat.o rm_reader.o wiggle_reader.o gff3_reader.o gtf_reader.o gff3_location_merger.o gtf_location_merger.o gff_base_columns.o gff2_data.o gff2_reader.o gvf_reader.o vcf_reader.o psl_reader.o psl_data.o bed_reader.o bed_autosql.o bed_autosql_standard.o bed_autosql_custom.o bed_column_data.o best_feat_finder.o source_mod_parser.o fasta_exception.o agp_converter.o ucscregion_reader.o struct_cmt_reader.o mod_reader.o mod_error.o descr_mod_apply.o feature_mod_apply.o mod_to_enum.o message_listener.o line_error.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lsubmit -lseqset -lseq -lseqcode -lsequtil -lgeneral -lxutil -lxlogging -lpub -lxser -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjread.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libxobjread.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxobjread.so +/bin/ln -f .xobjread.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xobjread.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/readers' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/readers' +cd objtools/seqmasks_io/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=seqmasks_io UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/dbindex/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xalgoblastdbindex UNIX_PROJ="" sources= configurables=configurables.null +cd objtools/align_format/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=align_format UNIX_PROJ="" sources= configurables=configurables.null +cd objtools/blast/seqdb_writer/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=writedb UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/seqmasks_io' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/seqmasks_io' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/seqmasks_io' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/seqmasks_io' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/seqmasks_io' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io TMPL=seqmasks_io -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format TMPL=align_format -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer TMPL=writedb -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex TMPL=xalgoblastdbindex -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/seqmasks_io' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_cmdline_args.cpp -o mask_cmdline_args.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp -o mask_bdb_reader.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp -o mask_fasta_reader.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_writer.cpp -o mask_writer.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp -o mask_writer_fasta.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_writer_int.cpp -o mask_writer_int.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=.make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb.cpp -o writedb.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp -o writedb_impl.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp -o writedb_volume.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp -o writedb_files.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp -o writedb_isam.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp -o writedb_gIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat_bin.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_ostat_bin.cpp:35: +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/format_flags.cpp -o format_flags.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/align_format_util.cpp -o align_format_util.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showdefline.cpp -o showdefline.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showalign.cpp -o showalign.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/tabular.cpp -o tabular.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/vectorscreen.cpp -o vectorscreen.o +/usr/bin/g++ -std=gnu++14 -cimask.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp -o writedb_convert.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_general.cpp -o writedb_general.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp -o writedb_column.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/mask_info_registry.cpp -o mask_info_registry.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/taxid_set.cpp -o taxid_set.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/build_db.cpp -o build_db.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/align_format_util.cpp:46: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -35014,92 +33665,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker.cpp: In member function 'ncbi::CSeqMasker::TMaskList* ncbi::CSeqMasker::DoMask(const ncbi::objects::CSeqVector&, ncbi::TSeqPos, ncbi::TSeqPos) const': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker.cpp:166:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 166 | auto_ptr mask(new TMaskList); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker.cpp:171:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 171 | auto_ptr window_ptr - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat_bin.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_istat_bin.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -35112,12 +33680,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -35130,20 +33698,14 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -NTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_istat_ascii.cpp -o seq_masker_istat_ascii.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_uset_simple.cpp -o seq_masker_uset_simple.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_istat_factory.cpp -o seq_masker_istat_factory.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_ostat_bin.cpp -o seq_masker_ostat_bin.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_uset_array.cpp -o seq_masker_uset_array.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_istat_bin.cpp -o seq_masker_istat_bin.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_ostat_In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat_opt.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat_opt_ascii.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showdefline.cpp:55: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -35234,67 +33796,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat_opt.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_ostat_opt.cpp:42: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -35307,12 +33811,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -35325,46 +33829,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:39: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat_oascii.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_istat_oascii.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showalign.cpp:77: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -35455,68 +33926,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat_opt.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat_opt_bin.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -35529,12 +33941,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -35547,41 +33959,14 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat_factory.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_istat_factory.cpp:35: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat_obinary.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_istat_obinary.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/tabular.cpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -35672,80 +34057,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -opt.cpp -o seq_masker_ostat_opt.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp -o seq_masker_ostat_opt_ascii.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_uset_hash.cpp -o seq_masker_uset_hash.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_istat_oascii.cpp -o seq_masker_istat_oascii.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp -o seq_masker_ostat_opt_bin.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_istat_obinary.cpp -o seq_masker_istat_obinary.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_cache_boost.cpp -o seq_masker_cache_boost.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-coIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_cache_boost.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_cache_boost.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -35758,12 +34072,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -35776,12 +34090,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_counts_converter.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/taxFormat.cpp:51: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -35872,104 +34187,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbitime.hpp:65, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_system.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbifile.hpp:53, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_istat_bin.cpp:35: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_gen_counts.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_gen_counts.cpp:53: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -35982,12 +34202,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -36000,21 +34220,65 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp:38: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +te.cpp -o feature_propagate.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/text_object_description.cpp -o text_object_description.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_edit.cpp -o seq_edit.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/pub_fix.cpp -o pub_fix.o +/bin/rm -f libxobjedit.so .libxobjedit.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libxobjedit.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC gene_utils.o seq_entry_edit.o promote.o autodef_with_tax.o field_handler.o apply_object.o string_constraint.o seqid_guesser.o dblink_field.o struc_comm_field.o text_desc_field.o gb_block_field.o link_cds_mrna.o cds_fix.o loc_edit.o mail_report.o feattable_edit.o gaps_edit.o source_edit.o rna_edit.o remote_updater.o parse_text_options.o publication_edit.o gap_trim.o external_annots.o feature_propagate.o text_object_description.o seq_edit.o pub_fix.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxobjutil -ltaxon3 -lvalid -lmlacli -lxlogging -leutils -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjedit.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libxobjedit.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxobjedit.so +/bin/ln -f .xobjedit.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xobjedit.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/edit' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/edit' +cd objtools/cleanup/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=cleanup UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/cleanup' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/cleanup' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/cleanup' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/cleanup' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/cleanup' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup TMPL=cleanup -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/cleanup' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/autogenerated_cleanup.cpp -o autogenerated_cleanup.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp -o autogenerated_extended_cleanup.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup.cpp -o cleanup.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_utils.cpp -o cleanup_utils.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/gene_qual_normalization.cpp -o gene_qual_normalization.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_user_object.cpp -o cleanup_user_object.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blasIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex.cpp:38: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:41: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp:41: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat_oascii.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -36030,117 +34294,37 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showdefline.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showdefline.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_istat.cpp:32: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:41: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat_obinary.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/Bioseq_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/Bioseq.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_writer_fasta.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -36160,31 +34344,34 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp:55: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_util.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_config.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_config.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_config.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_fasta_reader.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_gen_counts.cpp:45: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] + 94 | objects::CFastaReader::fAllSeqIds | + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here + 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] + 94 | objects::CFastaReader::fAllSeqIds | + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here + 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) + | ^~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_writer.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ @@ -36193,17 +34380,19 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/Bioseq_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/Bioseq.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_gen_counts.cpp:39: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/Seqdesc_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/Seqdesc.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_writer.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:41: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnseq.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmatch.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmix.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/tabular.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -36211,9 +34400,10 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_cache_boost.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/tabular.cpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -36229,35 +34419,51 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_dup_table.cpp:43: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_dup_table.cpp:39: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; - | ^~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:52:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] + 52 | objects::CFastaReader::fAllSeqIds; + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here + 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp:52:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] + 52 | objects::CFastaReader::fAllSeqIds; + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here + 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) + | ^~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_util.hpp:40: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_gimask.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_gimask.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -36273,25 +34479,29 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_util.hpp:188:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 188 | auto_ptr< CNcbiIstream > m_InputFile; // input file - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_util.hpp:189:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 189 | auto_ptr< CMaskReader > m_Reader; // reader used for fasta and bdb formats - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_explorer.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnvec.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/align_format_util.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:31: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_counts_converter.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_counts_converter.cpp:42: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -36299,18 +34509,13 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_util.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_counts_converter.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/util/sequtil/sequtil_convert.hpp:34, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_convert.cpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmerger.cpp: In member function 'void ncbi::objects::CAlnMixMerger::x_Merge()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmerger.cpp:691:40: warning: 'second_row_fits' may be used uninitialized [-Wmaybe-uninitialized] - 691 | second_row_fits != eIgnoreMatch) { - | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alnmerger.cpp:155:20: note: 'second_row_fits' was declared here - 155 | TSecondRowFits second_row_fits; - | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ @@ -36323,63 +34528,37 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp: In member function 'std::string ncbi::blastdbindex::CSubjectMap_Factory_Base::extractSeqVector(TSeqData&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp:658:47: warning: 'std::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, TGetTitleFlags)' is deprecated [-Wdeprecated-declarations] - 658 | string idstr = objects::sequence::GetTitle( bsh ); - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:289:8: note: declared here - 289 | string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0); - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp: In member function 'void ncbi::blastdbindex::COffsetData_Factory::Save(ncbi::CNcbiOstream&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp:1409:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1409 | std::auto_ptr< CNcbiOfstream > stats; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp: In static member function 'static void ncbi::blastdbindex::CDbIndex_Factory::do_create_1_2(ncbi::blastdbindex::CSequenceIStream&, const std::string&, ncbi::blastdbindex::CDbIndex::TSeqNum, ncbi::blastdbindex::CDbIndex::TSeqNum, ncbi::blastdbindex::CDbIndex::TSeqNum&, ncbi::blastdbindex::CDbIndex::TSeqNum&, const ncbi::blastdbindex::CDbIndex::SOptions&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp:1665:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1665 | std::auto_ptr< COffsetList::CDataPool > pool( - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_config.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] - 94 | objects::CFastaReader::fAllSeqIds | - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here - 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] - 94 | objects::CFastaReader::fAllSeqIds | - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here - 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) - | ^~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_gen_counts.cpp:46: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_files.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/Align_def_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/Align_def.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/seq__.hpp:1, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_general.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:41: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -36397,11 +34576,24 @@ | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_dup_table.cpp:44: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_volume.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_volume.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_volume.hpp:41: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] @@ -36416,23 +34608,129 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_config.cpp:45: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/vectorscreen.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/vectorscreen.cpp:33: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/html/html.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/vectorscreen.hpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_bdb_reader.cpp:34: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_util.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_explorer.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnvec.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showalign.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:31: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnseq.hpp:216:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 216 | auto_ptr m_Starts; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_isam.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:33: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_utils.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_utils.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -36440,7 +34738,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_utils.cpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -36456,34 +34754,74 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:49:74: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] - 49 | CSeqFormatterConfig config /* = CSeqFormatterConfig() */) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here - 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { - | ^~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:57: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/cleanup/cleanup.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_author.cpp:42: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_author.cpp:33: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:41: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_utils.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqset/Seq_entry_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqset/Seq_entry.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/autogenerated_extended_cleanup.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -36499,46 +34837,78 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_gen_counts.hpp:47: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/tabular.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/seq_writer.cpp:270:72: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] - 270 | void CSeqFormatter::DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here - 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { - | ^~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_utils.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_dup_table.cpp:48: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/fix_feature_id.cpp:32: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqfeat/Feat_id_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqfeat/Feat_id.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/fix_feature_id.cpp:31: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ @@ -36551,24 +34921,79 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/newcleanupp.cpp:42: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_autoinit.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/newcleanupp.cpp:39: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] - 94 | objects::CFastaReader::fAllSeqIds | - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here - 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] - 94 | objects::CFastaReader::fAllSeqIds | - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here - 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) - | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/vectorscreen.hpp:42: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex.cpp:42: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp:42: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ @@ -36581,118 +35006,101 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_util.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_util.hpp:188:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 188 | auto_ptr< CNcbiIstream > m_InputFile; // input file - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_writer.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_util.hpp:189:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 189 | auto_ptr< CMaskReader > m_Reader; // reader used for fasta and bdb formats - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_dup_table.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_dup_table.cpp:50: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_util.hpp:188:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 188 | auto_ptr< CNcbiIstream > m_InputFile; // input file - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_util.hpp:189:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 189 | auto_ptr< CMaskReader > m_Reader; // reader used for fasta and bdb formats - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/cleanup/capitalization_string.hpp:32, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/capitalization_string.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/capitalization_string.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp: In member function 'void ncbi::objects::edit::{anonymous}::CSeqdescSortMap::Init()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:173:47: warning: comparison of integer expressions of different signedness: 'char' and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] - 173 | if (descr_insert_order[index] >= size()) - | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_util.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] - 94 | objects::CFastaReader::fAllSeqIds | - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here - 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] - 94 | objects::CFastaReader::fAllSeqIds | - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here - 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) - | ^~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_gen_counts.hpp:51: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_util.hpp:188:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 188 | auto_ptr< CNcbiIstream > m_InputFile; // input file - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_util.hpp:189:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 189 | auto_ptr< CMaskReader > m_Reader; // reader used for fasta and bdb formats - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_util.cpp: In member function 'virtual bool ncbi::CWinMaskUtil::CIdSet_TextMatch::find(const ncbi::objects::CBioseq_Handle&) const': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_util.cpp:130:39: warning: 'std::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, TGetTitleFlags)' is deprecated [-Wdeprecated-declarations] - 130 | string id_str = sequence::GetTitle( bsh ); - | ~~~~~~~~~~~~~~~~~~^~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:289:8: note: declared here - 289 | string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0); - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'void ncbi::objects::edit::ConvertRawToDeltaByNs(ncbi::objects::CSeq_inst&, size_t, int, size_t, int, bool, int, int, int)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:1854:71: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] - 1854 | if (n_len >= min_unknown && (max_unknown < 0 || n_len <= max_unknown)) { - | ~~~~~~^~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:1856:74: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] - 1856 | } else if (n_len >= min_known && (max_known < 0 || n_len <= max_known)) { - | ~~~~~~^~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:1879:63: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] - 1879 | if (n_len >= min_unknown && (max_unknown < 0 || n_len <= max_unknown)) { - | ~~~~~~^~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:1881:66: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'int' [-Wsign-compare] - 1881 | } else if (n_len >= min_known && (max_known < 0 || n_len <= max_known)) { - | ~~~~~~^~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'void ncbi::objects::edit::TrimSeqData(ncbi::objects::CBioseq_Handle, ncbi::CRef, const TCuts&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:2481:16: warning: enumeration value 'eSeqSubMap' not handled in switch [-Wswitch] - 2481 | switch (seqmap_ci.GetType()) { - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:2481:16: warning: enumeration value 'eSeqRef' not handled in switch [-Wswitch] -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:2481:16: warning: enumeration value 'eSeqEnd' not handled in switch [-Wswitch] -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:2481:16: warning: enumeration value 'eSeqChunk' not handled in switch [-Wswitch] -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:2481:16: warning: enumeration value 'eSeqLiteral' not handled in switch [-Wswitch] -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'bool ncbi::objects::edit::s_FindSegment(const ncbi::objects::CDense_seg&, ncbi::objects::CDense_seg_Base::TDim, ncbi::TSeqPos, ncbi::objects::CDense_seg_Base::TNumseg&, ncbi::TSeqPos&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:2839:21: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'ncbi::TSignedSeqPos' {aka 'int'} [-Wsign-compare] - 2839 | if (pos >= start && pos < start + len) { - | ~~~~^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:2839:39: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'ncbi::TSignedSeqPos' {aka 'int'} [-Wsign-compare] - 2839 | if (pos >= start && pos < start + len) { - | ~~~~^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp: In function 'void ncbi::objects::edit::TrimSeqAlign(ncbi::objects::CBioseq_Handle, ncbi::CRef, const TCuts&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:3043:32: warning: comparison of integer expressions of different signedness: 'ncbi::TSignedSeqPos' {aka 'int'} and 'ncbi::TSeqPos' {aka 'unsigned int'} [-Wsign-compare] - 3043 | else if (seg_start < cut_from) { - | ~~~~~~~~~~^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_entry_edit.cpp:3046:32: warning: comparison of integer expressions of different signedness: 'ncbi::TSignedSeqPos' {aka 'int'} and 'ncbi::TSeqPos' {aka 'unsigned int'} [-Wsign-compare] - 3046 | else if (seg_start >= cut_from && - | ~~~~~~~~~~^~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_dup_table.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_gen_counts.cpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/newcleanupp.cpp:49: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/capitalization_string.cpp: In function 'void ncbi::objects::CapitalizeAfterApostrophe(std::string&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/capitalization_string.cpp:911:25: warning: comparison of integer expressions of different signedness: 'const int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] + 911 | if (rslt[0] != start) + | ~~~~~~~~^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/capitalization_string.cpp: In function 'void ncbi::objects::FixAffiliationShortWordsInElement(std::string&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/capitalization_string.cpp:950:29: warning: comparison of integer expressions of different signedness: 'const int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] + 950 | if (rslt[0] != start) + | ~~~~~~~~^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/capitalization_string.cpp: In function 'void ncbi::objects::FixOrdinalNumbers(std::string&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/capitalization_string.cpp:977:29: warning: comparison of integer expressions of different signedness: 'const int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] + 977 | if (rslt[0] != start) + | ~~~~~~~~^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ @@ -36705,479 +35113,113 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -mpile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_counts_converter.cpp -o win_mask_counts_converter.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_dup_table.cpp -o win_mask_dup_table.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_gen_counts.cpp -o win_mask_gen_counts.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_util.cpp -o win_mask_util.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_config.cpp -o win_mask_config.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_istat.cpp -o seq_masker_istat.o -/bin/rm -f libxalgowinmask.so .libxalgowinmask.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libxalgowinmask.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC seq_masker.o seq_masker_score_mean.o seq_masker_score_mean_glob.o seq_masker_score_min.o seq_masker_util.o seq_masker_window.o seq_masker_window_ambig.o seq_maskermake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex' -/usr/bin/g++ -std=gnu++14 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp -o sequence_istream_fasta.o -/usr/bin/g++ -std=gnu++14 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp -o sequence_istream_bdb.o -/usr/bin/g++ -std=gnu++14 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex.cpp -o dbindex.o -/usr/bin/g++ -std=gnu++14 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp -o dbindex_factory.o -/usr/bin/g++ -std=gnu++14 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex_search.cpp -o dbindex_search.o -/bin/rm -f libxalgoblastdbindex.so .libxalgoblastdbindex.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libxalgoblastdbindex.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC sequence_istream_fasta.o sequence_istream_bdb.o dbindex.o dbindex_factory.o dbindex_search.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast -lseqdb -lxobjread -lxobjutil -lxobjmgr -lseqset -lseq -lxser -lxutil -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgoblastdbindex.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libxalgoblastdbindex.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxalgoblastdbindex.so -/bin/ln -f .xalgoblastdbindex.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xalgoblastdbindex.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex' -cd algo/blast/dbindex/makeindex/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=makeindex LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/makeindex TMPL=makeindex -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/makeindex/mkindex_app.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -_window_pattern.o seq_masker_window_pattern_ambig.o seq_masker_ostat_factory.o seq_masker_ostat.o seq_masker_ostat_ascii.o seq_masker_istat_ascii.o seq_masker_uset_simple.o seq_masker_istat_factory.o seq_masker_ostat_bin.o seq_masker_uset_array.o seq_masker_istat_bin.o seq_masker_ostat_opt.o seq_masker_ostat_opt_ascii.o seq_masker_uset_hash.o seq_masker_istat_oascii.o seq_masker_ostat_opt_bin.o seq_masker_istat_obinary.o seq_masker_cache_boost.o win_mask_counts_converter.o win_mask_dup_table.o win_mask_gen_counts.o win_mask_util.o win_mask_config.o seq_masker_istat.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lseqmasks_io -lxobjread -lxobjutil -lxobjmgr -lseq -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgowinmask.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libxalgowinmask.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxalgowinmask.so -/bin/ln -f .xalgowinmask.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xalgowinmask.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/winmask' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/winmask' -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/makeindex/mkindex_app.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/makeindex/main.cpp:47: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/makeindex/main.cpp:42: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/gene_qual_normalization.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/gene_qual_normalization.cpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:49: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_user_object.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_user_object.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp: In member function 'virtual void ncbi::CMkIndexApplication::Init()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:67:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 67 | auto_ptr< CArgDescriptions > arg_desc( new CArgDescriptions ); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/newcleanupp.cpp: In function 'typename TMapType::const_iterator ncbi::objects::s_FindInMapAsPrefix(const std::string&, const TMapType&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/newcleanupp.cpp:1187:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1187 | auto_ptr temp_str; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/sparse_ci.cpp -o sparse_ci.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/alntext.cpp -o alntext.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/score_builder_base.cpp -o score_builder_base.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/alnmgr/aln_container.cpp -o aln_container.o -/bin/rm -f libxalnmgr.so .libxalnmgr.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libxalnmgr.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC aln_builders.o aln_converters.o aln_generators.o aln_seqid.o aln_serial.o alndiag.o alnmap.o alnmapprint.o alnmatch.o alnmerger.o alnmix.o alnpos_ci.o alnsegments.o alnseq.o alnvec.o alnvec_iterator.o alnvecprint.o pairwise_aln.o sparse_aln.o sparse_ci.o alntext.o score_builder_base.o aln_container.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxobjutil -lxobjmgr -lseqset -lseq -lxser -ltables -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalnmgr.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libxalnmgr.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxalnmgr.so -/bin/ln -f .xalnmgr.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xalnmgr.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/alnmgr' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/alnmgr' -cd algo/blast/api/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xblast UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/api' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api TMPL=xblast -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_aux.cpp -o blast_aux.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_options_cxx.cpp -o blast_options_cxx.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_options_local_priv.cpp -o blast_options_local_priv.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_options_builder.cpp -o blast_options_builder.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_setup_cxx.cpp -o blast_setup_cxx.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_seqalign.cpp -o blast_seqalign.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-forIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_setup_cxx.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/id2/reader_id2.cpp -o reader_id2.o -/bin/rm -f libncbi_xreader_id2.a .libncbi_xreader_id2.a.stamp -ar cr libncbi_xreader_id2.a reader_id2.o -/bin/rm -f libncbi_xreader_id2.so .libncbi_xreader_id2.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libncbi_xreader_id2.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC reader_id2.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lsubmit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2.a /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libncbi_xreader_id2.a /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libncbi_xreader_id2.a -/bin/ln -f .ncbi_xreader_id2-static.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.ncbi_xreader_id2-static.dep -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_id2.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libncbi_xreader_id2.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libncbi_xreader_id2.so -/bin/ln -f .ncbi_xreader_id2.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.ncbi_xreader_id2.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_setup_cxx.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/newcleanupp.cpp: In member function 'void ncbi::objects::CNewCleanup_imp::x_RemoveFlankingQuotes(std::string&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/newcleanupp.cpp:5849:22: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] + 5849 | for( ; first_pos <= last_pos ; ++first_pos, --last_pos ) { + | ~~~~~~~~~~^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/newcleanupp.cpp:5863:19: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] + 5863 | if( first_pos > last_pos ) { + | ~~~~~~~~~~^~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup.cpp:58: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbitime.hpp:65, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_system.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbifile.hpp:53, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/util/util_misc.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_setup_cxx.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup.cpp:33: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/gene_qual_normalization.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup.cpp:59: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_user_object.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -37195,11 +35237,8 @@ | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_nucl_options.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_nucl_options.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_utils.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/autogenerated_cleanup.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -37208,9 +35247,10 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqset/Seq_entry_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqset/Seq_entry.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/autogenerated_cleanup.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/autogenerated_cleanup.cpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -37226,10 +35266,22 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_aux.cpp:49: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/cleanup/cleanup.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_pub.cpp:49: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -37237,10 +35289,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_aux.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_pub.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -37256,15 +35305,65 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_user_object.cpp: In static member function 'static bool ncbi::objects::CCleanup::s_AddNumToUserField(ncbi::objects::CUser_field&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_user_object.cpp:369:53: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CUser_field_Base::TNum' {aka 'int'} and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] + 369 | if (!field.IsSetNum() || field.GetNum() != field.GetData().GetStrs().size()) { + | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_user_object.cpp:375:53: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CUser_field_Base::TNum' {aka 'int'} and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] + 375 | if (!field.IsSetNum() || field.GetNum() != field.GetData().GetInts().size()) { + | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_user_object.cpp:381:53: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CUser_field_Base::TNum' {aka 'int'} and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] + 381 | if (!field.IsSetNum() || field.GetNum() != field.GetData().GetReals().size()) { + | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_user_object.cpp:387:53: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CUser_field_Base::TNum' {aka 'int'} and 'std::vector*>::size_type' {aka 'unsigned int'} [-Wsign-compare] + 387 | if (!field.IsSetNum() || field.GetNum() != field.GetData().GetOss().size()) { + | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup.cpp: In static member function 'static bool ncbi::objects::CCleanup::x_HasShortIntron(const ncbi::objects::CSeq_loc&, size_t)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup.cpp:2889:68: warning: comparison of integer expressions of different signedness: 'long int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] + 2889 | if (abs((long int)this_start - (long int)prev_end) < min_len) { + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup.cpp: In static member function 'static bool ncbi::objects::CCleanup::DecodeXMLMarkChanged(std::string&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup.cpp:4167:21: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] + 4167 | idx < sizeof(transformations)/sizeof(transformations[0]); + | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_prot_options.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_advprot_options.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/psiblast_options.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psiblast_options.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_volume.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_impl.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp:44: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -37272,10 +35371,55 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_impl.cpp:34: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp: In member function 'void ncbi::CWriteDB_IsamIndex::x_AddPdb(int, const ncbi::objects::CSeq_id&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_isam.cpp:659:9: warning: unused variable 'len' [-Wunused-variable] + 659 | int len = short_id.size(); + | ^~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showalign.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showdefline.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -37291,11 +35435,36 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex.cpp:55: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp: In member function 'void ncbi::CWriteDB_LMDB::x_CommitTransaction()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp:295:55: warning: 'unsigned int ncbi::GetCpuCount()' is deprecated [-Wdeprecated-declarations] + 295 | unsigned int num_threads = GetCpuCount(); + | ~~~~~~~~~~~^~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbifile.hpp:53, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_system.hpp:479:14: note: declared here + 479 | unsigned int GetCpuCount(void) + | ^~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_options_cxx.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_explorer.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnvec.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/taxFormat.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/taxFormat.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -37304,9 +35473,11 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/taxon1/Taxon1_data_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/taxon1/Taxon1_data.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/taxon1/taxon1__.hpp:1, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/taxon1/taxon1.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/taxFormat.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -37322,11 +35493,14 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_seqalign.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_seqalign.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex.cpp: In function 'const ncbi::blastdbindex::SIndexHeader ncbi::blastdbindex::ReadIndexHeader(void*) [with bool LEGACY = true]': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex.cpp:306:19: warning: variable 'tmp' set but not used [-Wunused-but-set-variable] + 306 | unsigned long tmp; + | ^~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/aln_printer.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -37334,7 +35508,8 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_seqalign.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/bioseq_handle.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/aln_printer.cpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -37350,25 +35525,82 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/build_db.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbithr_conf.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimtx.hpp:62, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbienv.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/build_db.cpp:34: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showdefline.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_options_handle.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_column.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_exception.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_options_handle.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_column.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -37384,24 +35616,57 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/build_db.cpp:44: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_options_local_priv.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_options_local_priv.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/build_db.cpp:45: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_exception.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_options_local_priv.cpp:35: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -37417,13 +35682,48 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/build_db.cpp: In constructor 'ncbi::CFastaBioseqSource::CFastaBioseqSource(ncbi::CNcbiIstream&, bool, bool, bool)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/build_db.cpp:709:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] + 709 | int iflags = CFastaReader::fAllSeqIds | + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here + 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/build_db.cpp:709:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] + 709 | int iflags = CFastaReader::fAllSeqIds | + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here + 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/build_db.cpp:720:33: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] + 720 | iflags |= CFastaReader::fAllSeqIds | CFastaReader::fRequireID; + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here + 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/build_db.cpp:720:33: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] + 720 | iflags |= CFastaReader::fAllSeqIds | CFastaReader::fRequireID; + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here + 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) + | ^~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_prot_options.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_prot_options.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_explorer.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnvec.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/seqalignfilter.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -37432,9 +35732,9 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/general/User_object_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/general/User_object.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/seqalignfilter.cpp:35: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -37450,25 +35750,21 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_options_handle.cpp: In member function 'char* ncbi::blast::CBlastOptionsHandle::GetFilterString() const': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_options_handle.cpp:100:35: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] - 100 | return m_Opts->GetFilterString(); /* NCBI_FAKE_WARNING */ - | ~~~~~~~~~~~~~~~~~~~~~~~^~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here - 178 | NCBI_DEPRECATED char* GetFilterString() const; - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_options_handle.cpp: In member function 'void ncbi::blast::CBlastOptionsHandle::SetFilterString(const char*, bool)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_options_handle.cpp:106:28: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] - 106 | m_Opts->SetFilterString(f, clear); /* NCBI_FAKE_WARNING */ - | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here - 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); - | ^~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, +t+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_author.cpp -o cleanup_author.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_pub.cpp -o cleanup_pub.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/newcleanupp.cpp -o newcleanupp.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/capitalization_string.cpp -o capitalization_string.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/fix_feature_id.cpp -o fix_feature_id.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_message.cpp -o cleanup_message.o +/bin/rm -f libxcleanup.so .libxcleanup.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libxcleanup.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC autogenerated_cleanup.o autogenerated_extended_cleanup.o cleanup.o cleanup_utils.o gene_qual_normalization.o cleanup_user_object.o cleanup_authoIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_options_builder.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_convert.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_files.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_volume.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_impl.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -37476,7 +35772,11 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb_error.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/writedb.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -37492,35 +35792,60 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/reader_cache.cpp -o reader_cache.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/cache/writer_cache.cpp -o writer_cache.o -/bin/rm -f libncbi_xreader_cache.a .libncbi_xreader_cache.a.stamp -ar cr libncbi_xreader_cache.a reader_cache.o writer_cache.o -/bin/rm -f libncbi_xreader_cache.so .libncbi_xreader_cache.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libncbi_xreader_cache.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC reader_cache.o writer_cache.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lncbi_xreader -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lsubmit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache.a /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libncbi_xreader_cache.a /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libncbi_xreader_cache.a -/bin/ln -f .ncbi_xreader_cache-static.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.ncbi_xreader_cache-static.dep -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xreader_cache.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libncbi_xreader_cache.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libncbi_xreader_cache.so -/bin/ln -f .ncbi_xreader_cache.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.ncbi_xreader_cache.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' -cd objtools/data_loaders/genbank/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=ncbi_xloader_genbank UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_nucl_options.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/disc_nucl_options.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/disc_nucl_options.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +r.o cleanup_pub.o newcleanupp.o capitalization_string.o fix_feature_id.o cleanup_message.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxobjutil -lvalid -lxregexp -lregexp -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcleanup.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libxcleanup.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxcleanup.so +/bin/ln -f .xcleanup.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xcleanup.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/cleanup' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/cleanup' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +cd objtools/format/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xformat UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/format' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/format' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/format' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/format' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/format' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format TMPL=xformat -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/format' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/accession_item.cpp -o accession_item.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/basecount_item.cpp -o basecount_item.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/comment_item.cpp -o comment_item.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/contig_item.cpp -o contig_item.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/date_item.cpp -o date_item.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/dbsource_item.cpp -o dbsource_item.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/defline_item.cpp -o defline_item.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/feature_item.cpp -o feature_item.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genome_item.cpp -o genome_item.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/ctrl_items.cpp -o ctrl_items.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/keywords_item.cpp -o keywords_item.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/locus_item.cpp -o locus_item.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/primary_item.cpp -o primary_item.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/reference_item.cpp -o reference_item.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/segment_item.cpp -o segment_item.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/sequence_item.cpp -o sequence_item.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/source_item.cpp -o source_item.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/version_item.cpp -o version_item.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/wgs_item.cpp -o wgs_item.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/feature.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:48, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/wgs_item.cpp:40: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -37528,10 +35853,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/wgs_item.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -37547,557 +35869,138 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank TMPL=ncbi_xloader_genbank -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/seq_writer.cpp -o seq_writer.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/blastdb_dataextract.cpp -o blastdb_dataextract.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/blastdb_formatter.cpp -o blastdb_formatter.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/seq_formatter.cpp -o seq_formatter.o -/bin/rm -f libblastdb_format.so .libblastdb_format.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libblastdb_format.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC seq_writer.o blastdb_dataextract.o blastdb_formatter.o seq_formatter.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lseqdb -lxobjutil -lxobjmgr -lseq -lxser -lsequtil -lxutil -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastdb_format.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libblastdb_format.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libblastdb_format.so -/bin/ln -f .blastdb_format.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.blastdb_format.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' -cd objtools/blast/blastdb_format/unit_test/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=blastdb_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -mat-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_options_handle.cpp -o blast_options_handle.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_nucl_options.cpp -o blast_nucl_options.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/disc_nucl_options.cpp -o disc_nucl_options.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_prot_options.cpp -o blast_prot_options.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psiblast_options.cpp -o psiblast_options.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_rps_options.cpp -o blast_rps_options.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.sIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/gbloader.cpp:66: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/gbnative.cpp:64: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test TMPL=blastdb_format_unit_test -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/defline_item.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/defline_item.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_formatter_unit_test.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=makembindex /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/makeindex/main.cpp -o main.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=makembindex /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp -o mkindex_app.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie main.o mkindex_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxalgoblastdbindex -lblast -lcomposition_adjustment -lseqdb -lblastdb -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -ltables -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o makembindex -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f makembindex /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f makembindex /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/makembindex -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/gbloader.hpp:48, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/gbload_util.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/primary_item.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/gbload_util.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/gbload_util.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/primary_item.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/gbloader.hpp:48, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/gbloader.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/feature.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:48, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/tsa_item.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_param.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/gbloader.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/tsa_item.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/gbnative.hpp:48, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/gbnative.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/feature.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:48, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/contig_item.cpp:45: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_param.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/gbnative.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/contig_item.cpp:33: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_prot_options.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blastx_options.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blastx_options.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/flat_seqloc.cpp:42: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -38106,9 +36009,9 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/general/Int_fuzz_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/general/Int_fuzz.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/flat_seqloc.cpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -38125,13 +36028,10 @@ 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_prot_options.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_rps_options.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_rps_options.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/feature.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:48, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/segment_item.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -38139,24 +36039,65 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/segment_item.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/gbloader.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/flat_seqloc.cpp:44: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/feature.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:48, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/date_item.cpp:43: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/date_item.cpp:33: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ @@ -38169,14 +36110,15 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_prot_options.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/tblastx_options.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/tblastx_options.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/dbsource_item.cpp:51: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -38184,10 +36126,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/dbsource_item.cpp:32: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -38203,111 +36142,124 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 103 | auto_ptr m_Indices; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 154 | auto_ptr m_Indices; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp:42: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/gbnative.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/primary_item.cpp:43: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/psg_loader.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/flat_seqloc.cpp:48: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/feature.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:48, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/keywords_item.cpp:53: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/psg_loader.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/keywords_item.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/data_source.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader_snp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/processor.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/dispatcher.hpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 103 | auto_ptr m_Indices; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/snp_annot_info.hpp:154:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 154 | auto_ptr m_Indices; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/ctrl_items.cpp:49: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/ctrl_items.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/gbnative.cpp: In member function 'void ncbi::objects::CGBDataLoader_Native::x_CreateDriver(const ncbi::objects::CGBLoaderParams&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/gbnative.cpp:291:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 291 | auto_ptr app_params; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -pecs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blastx_options.cpp -o blastx_options.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/tblastx_options.cpp -o tblastx_options.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/tblastn_options.cpp -o tblastn_options.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/rpstblastn_options.cpp -o rpstblastn_options.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/phiblast_nucl_options.cpp -o phiblast_nucl_options.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/phiblast_prot_options.cpp -o phiblast_prot_options.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_prot_options.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_advprot_options.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/tblastn_options.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/tblastn_options.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/feature_item.cpp:90: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -38315,10 +36267,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/feature_item.cpp:44: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -38334,12 +36283,44 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/defline_item.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/feature.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:48, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genome_item.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -38347,12 +36328,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genome_item.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -38370,13 +36346,8 @@ | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_prot_options.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_rps_options.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/rpstblastn_options.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/rpstblastn_options.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/basecount_item.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -38384,10 +36355,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/basecount_item.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -38403,23 +36371,63 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/feature_item.cpp:91: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/source_item.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/source_item.cpp:33: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_nucl_options.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/phiblast_nucl_options.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/phiblast_nucl_options.cpp:34: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/sequence_item.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -38427,10 +36435,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/sequence_item.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -38446,12 +36451,23 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/primary_item.cpp:48: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_formatter_unit_test.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/accession_item.cpp:40: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -38459,12 +36475,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/blastdb_seqid.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/accession_item.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -38480,187 +36491,49 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:69: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] - 85 | CSeqFormatterConfig config = CSeqFormatterConfig()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here - 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:96:85: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] - 96 | void DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config = CSeqFormatterConfig()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here - 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:85:68: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] - 85 | CSeqFormatterConfig config = CSeqFormatterConfig()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here - 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:96:84: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] - 96 | void DumpAll(CSeqDB& blastdb, CSeqFormatterConfig config = CSeqFormatterConfig()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here - 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function 'void seq_writer::TestNoFormatSpecifier::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:54:41: warning: 'CSeqFormatter' is deprecated [-Wdeprecated-declarations] - 54 | BOOST_REQUIRE_THROW(CSeqFormatter f(format_spec, db, std::cout), - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:124:9: note: in definition of macro 'BOOST_CHECK_THROW_IMPL_EX' - 124 | S; \ - | ^ -/usr/include/boost/test/tools/old/interface.hpp:120:45: note: in expansion of macro 'BOOST_CHECK_THROW_IMPL' - 120 | #define BOOST_REQUIRE_THROW( S, E ) BOOST_CHECK_THROW_IMPL( S, E, true, "", REQUIRE ) - | ^~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here - 77 | class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function 'void seq_writer::TestInvalidFormatSpecifiers_Empty::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:122:57: warning: 'CSeqFormatter' is deprecated [-Wdeprecated-declarations] - 122 | #define NcbiEmptyString NCBI_NS_NCBI::CNcbiEmptyString::Get() - | ^~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:124:9: note: in definition of macro 'BOOST_CHECK_THROW_IMPL_EX' - 124 | S; \ - | ^ -/usr/include/boost/test/tools/old/interface.hpp:120:45: note: in expansion of macro 'BOOST_CHECK_THROW_IMPL' - 120 | #define BOOST_REQUIRE_THROW( S, E ) BOOST_CHECK_THROW_IMPL( S, E, true, "", REQUIRE ) - | ^~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:123:19: note: in expansion of macro 'NcbiEmptyString' - 123 | #define kEmptyStr NcbiEmptyString - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:61:41: note: in expansion of macro 'kEmptyStr' - 61 | BOOST_REQUIRE_THROW(CSeqFormatter f(kEmptyStr, db, std::cout), - | ^~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here - 77 | class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function 'void seq_writer::TestInvalidFormatSpecifiers_InvalidAlgoId::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:68:25: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] - 68 | CSeqFormatterConfig config; - | ^~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here - 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:70:40: warning: 'CSeqFormatter' is deprecated [-Wdeprecated-declarations] - 70 | BOOST_REQUIRE_THROW(CSeqFormatter f("%m", db, std::cout, config), - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:124:9: note: in definition of macro 'BOOST_CHECK_THROW_IMPL_EX' - 124 | S; \ - | ^ -/usr/include/boost/test/tools/old/interface.hpp:120:45: note: in expansion of macro 'BOOST_CHECK_THROW_IMPL' - 120 | #define BOOST_REQUIRE_THROW( S, E ) BOOST_CHECK_THROW_IMPL( S, E, true, "", REQUIRE ) - | ^~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here - 77 | class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function 'void seq_writer::TestValidFormatSpecifiers::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:77:25: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] - 77 | CSeqFormatterConfig config; - | ^~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here - 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:93:24: warning: 'CSeqFormatter' is deprecated [-Wdeprecated-declarations] - 93 | CSeqFormatter f(*itr, db, std::cout, config); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here - 77 | class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:97:20: warning: 'CSeqFormatter' is deprecated [-Wdeprecated-declarations] - 97 | CSeqFormatter f("%m", db, std::cout, config); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here - 77 | class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function 'void seq_writer::TestRequestGiOidLength::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:108:21: warning: 'CSeqFormatter' is deprecated [-Wdeprecated-declarations] - 108 | CSeqFormatter f(format_spec, db, out); - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here - 77 | class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function 'void seq_writer::TestRequestSeqId::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:150:21: warning: 'CSeqFormatter' is deprecated [-Wdeprecated-declarations] - 150 | CSeqFormatter f(format_spec, db, out); - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here - 77 | class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function 'void seq_writer::TestRequestSeqIdLong::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:194:21: warning: 'CSeqFormatter' is deprecated [-Wdeprecated-declarations] - 194 | CSeqFormatter f(format_spec, db, out); - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here - 77 | class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function 'void seq_writer::TestRequestAccessionPIGTaxidTitle::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:227:21: warning: 'CSeqFormatter' is deprecated [-Wdeprecated-declarations] - 227 | CSeqFormatter f(format_spec, db, out); - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here - 77 | class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function 'void seq_writer::TestRequestGiGivenPIG::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:258:21: warning: 'CSeqFormatter' is deprecated [-Wdeprecated-declarations] - 258 | CSeqFormatter f(format_spec, db, out); - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here - 77 | class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function 'void seq_writer::TestRequestSequenceDataLength::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:283:21: warning: 'CSeqFormatter' is deprecated [-Wdeprecated-declarations] - 283 | CSeqFormatter f(format_spec, db, out); - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here - 77 | class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function 'void seq_writer::TestMaskedFasta::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:313:25: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] - 313 | CSeqFormatterConfig config; - | ^~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here - 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:318:21: warning: 'CSeqFormatter' is deprecated [-Wdeprecated-declarations] - 318 | CSeqFormatter f(format_spec, db, out, config); - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here - 77 | class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp: In member function 'void seq_writer::TestMaskedSequenceData::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:357:25: warning: 'CSeqFormatterConfig' is deprecated [-Wdeprecated-declarations] - 357 | CSeqFormatterConfig config; - | ^~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:43:24: note: declared here - 43 | struct NCBI_DEPRECATED CSeqFormatterConfig { - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp:360:21: warning: 'CSeqFormatter' is deprecated [-Wdeprecated-declarations] - 360 | CSeqFormatter f(format_spec, db, out, config); - | ^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_writer.hpp:77:50: note: declared here - 77 | class NCBI_BLASTDB_FORMAT_EXPORT NCBI_DEPRECATED CSeqFormatter - | ^~~~~~~~~~~~~ --D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/pssm_engine.cpp -o pssm_engine.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/local_blast.cpp -o local_blast.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/remote_blast.cpp -o remote_blast.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp -o seqinfosrc_seqvec.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp -o seqinfosrc_seqdb.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp -o seqinfosrc_bioseq.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/keywords_item.cpp: In member function 'virtual void ncbi::objects::CKeywordsItem::x_GatherInfo(ncbi::objects::CBioseqContext&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/keywords_item.cpp:344:18: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] + 344 | } catch (CException) { + | ^~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] @@ -38669,11 +36542,21 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/reference_item.cpp:60: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/reference_item.cpp:35: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/remote_blast.cpp:39: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/locus_item.cpp:55: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -38681,9 +36564,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbitime.hpp:65, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_system.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/remote_blast.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/locus_item.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -38699,6 +36580,32 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/feature_item.cpp:94: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/primary_item.cpp: In member function 'void ncbi::objects::CPrimaryItem::x_GetStrForPrimary(ncbi::objects::CBioseqContext&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/primary_item.cpp:220:63: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'ncbi::TSignedSeqPos' {aka 'int'} [-Wsign-compare] + 220 | if ( ctx.IsRefSeq() && last_stop > -1 && (this_start > (last_stop + 1)) ) { + | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/primary_item.cpp:221:28: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'int' [-Wsign-compare] + 221 | if (this_start < (15 + last_stop) ) { + | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ @@ -38712,13 +36619,10 @@ 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_prot_options.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/phiblast_prot_options.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/phiblast_prot_options.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/feature.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:48, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/version_item.cpp:40: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -38726,29 +36630,56 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/version_item.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/pssm_engine.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/accession_item.cpp:46: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/comment_item.cpp:58: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -38756,7 +36687,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/comment_item.cpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -38772,41 +36703,79 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/dbsource_item.cpp:56: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/remote_blast.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/search_strategy.hpp:178:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 178 | auto_ptr m_Data; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/search_strategy.hpp:181:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 181 | auto_ptr m_OptionsBuilder; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_blast.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/local_blast.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/dbsource_item.cpp:61: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/items/gene_finder.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/feature_item.cpp:108: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:37: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/items/gene_finder.hpp:113:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 113 | auto_ptr &feat_ci, + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -38822,18 +36791,52 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/ctrl_items.cpp:53: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/feature_item.cpp: In function 'const std::string& ncbi::objects::s_AaName(int)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/feature_item.cpp:2115:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'unsigned int'} [-Wsign-compare] + 2115 | if ( idx > 0 && idx < ArraySize(s_TrnaList) ) { + | ~~~~^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/sequence_item.cpp:43: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/reference_item.cpp:61: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -38849,12 +36852,143 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/basecount_item.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/locus_item.cpp:59: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/source_item.cpp:42: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/source_item.cpp:47: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/comment_item.cpp:63: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/comment_item.cpp: In function 'void ncbi::objects::s_GetAssemblyInfo(const CBioseqContext&, std::string&, const CUser_object&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/comment_item.cpp:374:16: warning: unused variable 'is_html' [-Wunused-variable] + 374 | const bool is_html = ctx.Config().DoHTML(); + | ^~~~~~~ +NDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/tsa_item.cpp -o tsa_item.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/flat_seqloc.cpp -o flat_seqloc.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/qualifiers.cpp -o qualifiers.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/context.cpp -o context.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_items.cpp -o gather_items.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/embl_gather.cpp -o embl_gather.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genbank_gather.cpp In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/seqinfosrc_seqdb.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/qualifiers.cpp:52: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -38862,10 +36996,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/qualifiers.cpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -38882,24 +37013,30 @@ 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/qualifiers.cpp:56: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -te.cpp -o feature_propagate.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/text_object_description.cpp -o text_object_description.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/seq_edit.cpp -o seq_edit.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/edit/pub_fix.cpp -o pub_fix.o -/bin/rm -f libxobjedit.so .libxobjedit.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libxobjedit.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC gene_utils.o seq_entry_edit.o promote.o autodef_with_tax.o field_handler.o apply_object.o string_constraint.o seqid_guesser.o dblink_field.o struc_comm_field.o text_desc_field.o gb_block_field.o link_cds_mrna.o cds_fix.o loc_edit.o mail_report.o feattable_edit.o gaps_edit.o source_edit.o rna_edit.o remote_updater.o parse_text_options.o publication_edit.o gap_trim.o external_annots.o feature_propagate.o text_object_description.o seq_edit.o pub_fix.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxobjutil -ltaxon3 -lvalid -lmlacli -lxlogging -leutils -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjedit.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libxobjedit.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxobjedit.so -/bin/ln -f .xobjedit.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xobjedit.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/edit' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/qualifiers.cpp: In member function 'virtual void ncbi::objects::CFlatSeqIdQVal::Format(ncbi::objects::TFlatQuals&, const ncbi::CTempString&, ncbi::objects::CBioseqContext&, ncbi::objects::IFlatQVal::TFlags) const': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/qualifiers.cpp:1108:10: warning: unused variable 'bHtml' [-Wunused-variable] + 1108 | bool bHtml = ctx.Config().DoHTML(); + | ^~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ @@ -38912,23 +37049,22 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/edit' -cd objtools/cleanup/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=cleanup UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/cleanup' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/cleanup' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/cleanup' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/cleanup' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/cleanup' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup TMPL=cleanup -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/reference_item.cpp:70: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/seqsrc_multiseq.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqsrc_multiseq.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/context.cpp:51: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -38936,10 +37072,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqsrc_multiseq.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/context.cpp:35: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -38955,19 +37088,24 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/cleanup' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/autogenerated_cleanup.cpp -o autogenerated_cleanup.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp -o autogenerated_extended_cleanup.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup.cpp -o cleanup.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_utils.cpp -o cleanup_utils.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/gene_qual_normalization.cpp -o gene_qual_normalization.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_user_object.cpp -o cleanup_user_object.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blasIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/ctrl_items.cpp:58: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqinfosrc_bioseq.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/items/sequence_item.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/embl_gather.cpp:49: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -38975,9 +37113,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_seqinfosrc.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/embl_gather.cpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -38993,18 +37129,35 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqsrc_multiseq.cpp: In function 'BlastSeqSrc* ncbi::blast::MultiSeqBlastSeqSrcInit(TSeqLocVector&, EBlastProgramType, bool)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqsrc_multiseq.cpp:562:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 562 | auto_ptr args +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_setup.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqsrc_seqdb.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genbank_gather.cpp:40: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -39012,10 +37165,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqsrc_seqdb.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genbank_gather.cpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -39031,12 +37181,23 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/context.cpp:56: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqsrc_query_factory.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqsrc_query_factory.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/feature.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:48, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/item_formatter.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/embl_formatter.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/embl_formatter.cpp:43: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -39044,7 +37205,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/embl_formatter.cpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -39060,11 +37221,34 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/context.cpp:64: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/bl2seq.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/bl2seq.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/flat_file_generator.cpp:41: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -39072,8 +37256,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_types.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/bl2seq.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/flat_file_generator.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -39089,51 +37272,40 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/gene_qual_normalization.cpp:39: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/gather_items.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/embl_gather.cpp:52: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/gene_qual_normalization.cpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqsrc_multiseq.cpp -o seqsrc_multiseq.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqsrc_seqdb.cpp -o seqsrc_seqdb.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqsrc_query_factory.cpp -o seqsrc_query_factory.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/bl2seq.cpp -o bl2seq.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_objmgr_tools.cpp -o blast_objmgr_tools.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/repeats_filter_cxx.cpp -o repeats_filter_cxx.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_mtlock.cpp -o blast_mtlock.o -/usr/bin/g++ -std=gnu++14 -c -Wall -WIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_user_object.cpp:39: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_user_object.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/gene_qual_normalization.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_utils.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_items.cpp:63: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -39141,11 +37313,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqset/Seq_entry_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqset/Seq_entry.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/autogenerated_extended_cleanup.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/autogenerated_extended_cleanup.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_items.cpp:35: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -39161,22 +37329,37 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/source_item.cpp: In member function 'void ncbi::objects::CSourceItem::x_GatherInfoIdx(ncbi::objects::CBioseqContext&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/source_item.cpp:182:23: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] + 182 | for (int i = 0; i < sizeof (legal_organelles) / sizeof (const char*); i++) { + | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/source_item.cpp: In member function 'void ncbi::objects::CSourceItem::x_SetSource(const ncbi::objects::CBioSource&, const ncbi::CSerialObject&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/source_item.cpp:387:21: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CBioSource_Base::TGenome' {aka 'int'} and 'const unsigned int' [-Wsign-compare] + 387 | if ( genome >= s_organelle_prefix_size ) { + | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/cleanup/capitalization_string.hpp:32, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/capitalization_string.cpp:40: +-o genbank_gather.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/flat_file_generator.cpp -o flat_file_generator.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/item_formatter.cpp -o item_formatter.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/embl_formatter.cpp -o embl_formatter.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genbank_formatter.cpp -o genbank_formatter.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/format_item_ostream.cpp -o format_item_ostream.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/item_ostream.cpp -o item_ostream.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genbank_formatter.cpp:43: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -39184,7 +37367,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/capitalization_string.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genbank_formatter.cpp:35: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -39200,9 +37383,25 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/locus_item.cpp:65: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/fix_feature_id.cpp:32: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/item_formatter.cpp:48: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -39210,10 +37409,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqfeat/Feat_id_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqfeat/Feat_id.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/fix_feature_id.cpp:31: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/item_formatter.cpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -39229,10 +37425,223 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/cleanup/cleanup.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_author.cpp:42: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/flat_file_generator.cpp:44: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_items.cpp:73: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/gather_items.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_items.cpp:100: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_items.cpp:101: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/gather_iter.hpp:78:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 78 | auto_ptr m_BioseqIter; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +UG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/ostream_text_ostream.cpp -o ostream_text_ostream.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/origin_item.cpp -o origin_item.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/ftable_gather.cpp -o ftable_gather.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/ftable_formatter.cpp -o ftable_formatter.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gbseq_formatter.cpp -o gbseq_formatter.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/flat_file_config.cpp -o flat_file_config.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_items.cpp: In member function 'void ncbi::objects::CFlatGatherer::x_SubtractFromFocus(TSourceFeatSet&) const': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_items.cpp:2144:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2144 | auto_ptr copyOfOriginalSeqLocOfFocus( new CSeq_loc() ); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/flat_file_generator.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/flat_file_generator.cpp:50: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/item_formatter.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/genbank_formatter.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genbank_formatter.cpp:47: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/gather_items.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genbank_gather.cpp:66: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/item_formatter.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/item_formatter.cpp:51: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/item_formatter.cpp:59: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/gbseq_formatter.hpp:105:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 105 | auto_ptr m_Out; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genbank_formatter.cpp: In member function 'virtual void ncbi::objects::CGenbankFormatter::FormatSequence(const ncbi::objects::CSequenceItem&, ncbi::objects::IFlatTextOStream&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genbank_formatter.cpp:2048:18: warning: catching polymorphic type 'class ncbi::objects::CSeqVectorException' by value [-Wcatch-value=] + 2048 | } catch (CSeqVectorException) { + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genbank_formatter.cpp:2089:26: warning: catching polymorphic type 'class ncbi::objects::CSeqVectorException' by value [-Wcatch-value=] + 2089 | } catch (CSeqVectorException) { + | ^~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_items.cpp: At global scope: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_items.cpp:971:13: warning: 'bool ncbi::objects::s_NsAreGaps(const CBioseq_Handle&, CBioseqContext&)' defined but not used [-Wunused-function] + 971 | static bool s_NsAreGaps(const CBioseq_Handle& seq, CBioseqContext& ctx) + | ^~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/items/feature_item.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/ftable_gather.cpp:40: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -39240,7 +37649,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_author.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/ftable_gather.cpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -39257,9 +37666,10 @@ 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_utils.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_utils.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/feature.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:48, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/origin_item.cpp:42: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -39267,7 +37677,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_utils.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/origin_item.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -39284,9 +37694,12 @@ 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/cleanup/cleanup.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_pub.cpp:49: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/feature.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:48, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/item_formatter.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/ftable_formatter.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/ftable_formatter.cpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -39294,7 +37707,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_pub.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/ftable_formatter.cpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -39310,43 +37723,33 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/capitalization_string.cpp: In function 'void ncbi::objects::CapitalizeAfterApostrophe(std::string&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/capitalization_string.cpp:911:25: warning: comparison of integer expressions of different signedness: 'const int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] - 911 | if (rslt[0] != start) - | ~~~~~~~~^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/capitalization_string.cpp: In function 'void ncbi::objects::FixAffiliationShortWordsInElement(std::string&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/capitalization_string.cpp:950:29: warning: comparison of integer expressions of different signedness: 'const int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] - 950 | if (rslt[0] != start) - | ~~~~~~~~^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/capitalization_string.cpp: In function 'void ncbi::objects::FixOrdinalNumbers(std::string&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/capitalization_string.cpp:977:29: warning: comparison of integer expressions of different signedness: 'const int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] - 977 | if (rslt[0] != start) - | ~~~~~~~~^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genbank_formatter.cpp: At global scope: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genbank_formatter.cpp:281:15: warning: 'std::string ncbi::objects::s_get_anchor_html(const std::string&, ncbi::TGi)' defined but not used [-Wunused-function] + 281 | static string s_get_anchor_html(const string & sAnchorName, TGi iGi ) + | ^~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/gather_items.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/ftable_gather.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -no-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psibl2seq.cpp -o psibl2seq.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/local_db_adapter.cpp -o local_db_adapter.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psiblast.cpp -o psiblast.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psiblast_impl.cpp -o psiblast_impl.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psiblast_iteration.cpp -o psiblast_iteration.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psi_pssm_input.cpp -o psi_pssm_input.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=forIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_user_object.cpp:40: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/feature.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:48, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/alignment_item.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/alignment_item.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -39362,10 +37765,22 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_objmgr_tools.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/items/feature_item.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/flat_file_config.cpp:45: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -39373,8 +37788,8 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/bioseq_handle.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/flat_file_config.hpp:34, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/flat_file_config.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -39391,65 +37806,85 @@ 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_utils.cpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_user_object.cpp: In static member function 'static bool ncbi::objects::CCleanup::s_AddNumToUserField(ncbi::objects::CUser_field&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_user_object.cpp:369:53: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CUser_field_Base::TNum' {aka 'int'} and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] - 369 | if (!field.IsSetNum() || field.GetNum() != field.GetData().GetStrs().size()) { - | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_user_object.cpp:375:53: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CUser_field_Base::TNum' {aka 'int'} and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] - 375 | if (!field.IsSetNum() || field.GetNum() != field.GetData().GetInts().size()) { - | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_user_object.cpp:381:53: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CUser_field_Base::TNum' {aka 'int'} and 'std::vector::size_type' {aka 'unsigned int'} [-Wsign-compare] - 381 | if (!field.IsSetNum() || field.GetNum() != field.GetData().GetReals().size()) { - | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_user_object.cpp:387:53: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CUser_field_Base::TNum' {aka 'int'} and 'std::vector*>::size_type' {aka 'unsigned int'} [-Wsign-compare] - 387 | if (!field.IsSetNum() || field.GetNum() != field.GetData().GetOss().size()) { - | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_objmgr_tools.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +blast+-2.12.0+ds/c++/src/objtools/format/alignment_item.cpp -o alignment_item.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gap_item.cpp -o gap_item.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genome_project_item.cpp -o genome_project_item.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/sam_formatter.cpp -o sam_formatter.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/cigar_formatter.cpp -o cigar_formatter.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_iter.cpp -o gather_iter.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/html_anchor_item.cpp -o html_anchor_item.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Wer/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_utils.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/autogenerated_cleanup.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_explorer.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/cigar_formatter.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/sam_formatter.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -39458,10 +37893,9 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqset/Seq_entry_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqset/Seq_entry.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/autogenerated_cleanup.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/autogenerated_cleanup.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Dense_seg_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Dense_seg.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -39477,33 +37911,11 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/gbloader.cpp -o gbloader.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/gbnative.cpp -o gbnative.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/gbload_util.cpp -o gbload_util.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/psg_loader.cpp -o psg_loader.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/genbank/psg_loader_impl.cpp -o psg_loader_impl.o -/bin/rm -f libncbi_xloader_genbank.a .libncbi_xloader_genbank.a.stamp -ar cr libncbi_xloader_genbank.a gbloader.o gbnative.o gbload_util.o psg_loader.o psg_loader_impl.o -/bin/rm -f libncbi_xloader_genbank.so .libncbi_xloader_genbank.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libncbi_xloader_genbank.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC gbloader.o gbnative.o gbload_util.o psg_loader.o psg_loader_impl.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lncbi_xreader_cache -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreaIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/dust_filter.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_objmgr_tools.cpp:51: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:159:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 159 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq ); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:168:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 168 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/repeats_filter_cxx.cpp:44: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/feature.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:48, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genome_project_item.cpp:43: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -39511,8 +37923,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/iterator.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/repeats_filter_cxx.cpp:39: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genome_project_item.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -39528,23 +37939,34 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blastdb_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp -o seq_writer_unit_test.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blastdb_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_formatter_unit_test.cpp -o seq_formatter_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie seq_writer_unit_test.o seq_formatter_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lblastdb_format -lxobjutil -lseqdb -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -lm -lpthread -o blastdb_format_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f blastdb_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastdb_format_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/ftable_formatter.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/newcleanupp.cpp:42: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/cigar_formatter.cpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_autoinit.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/newcleanupp.cpp:39: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Dense_seg_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Dense_seg.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/cigar_formatter.cpp:35: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -39561,33 +37983,55 @@ 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup.cpp:58: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_iter.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/gather_iter.hpp:78:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 78 | auto_ptr m_BioseqIter; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/gather_iter.hpp:37: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genome_project_item.cpp: In member function 'virtual void ncbi::objects::CGenomeProjectItem::x_GatherInfo(ncbi::objects::CBioseqContext&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genome_project_item.cpp:274:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 274 | auto_ptr pStrsDestroyer; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genome_project_item.cpp:305:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 305 | auto_ptr pIntsDestroyer; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/psibl2seq.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psibl2seq.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gbseq_formatter.cpp:49: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -39595,8 +38039,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_types.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:39: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gbseq_formatter.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -39612,6 +38055,25 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/sam_formatter.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ @@ -39624,21 +38086,25 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/psiblast.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psiblast.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_iter.cpp:42: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -39654,65 +38120,95 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -der -lid2 -lxobjmgr -lid1 -lseqedit -lseqsplit -lsubmit -lgenome_collection -lseqset -lseq -lpub -lmedline -lbiblio -lgeneral -lseqcode -lxcompress -lxser -lsequtil -lxconnect -lxutil -lxncbi -lz -lbz2 -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank.a /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libncbi_xloader_genbank.a /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libncbi_xloader_genbank.a -/bin/ln -f .ncbi_xloader_genbank-static.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.ncbi_xloader_genbank-static.dep -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_genbank.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libncbi_xloader_genbank.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libncbi_xloader_genbank.so -/bin/ln -f .ncbi_xloader_genbank.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.ncbi_xloader_genbank.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -cd objtools/align_format/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=align_format UNIX_PROJ="" sources= configurables=configurables.null -cd objtools/simple/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xobjsimple UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -cd app/dustmasker/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=dustmasker LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -cd app/winmasker/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=winmasker LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/simple' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/dustmasker' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/simple' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/simple' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/dustmasker' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/dustmasker' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/simple' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/simple' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format TMPL=align_format -w -j11 --jobserver-auth=7,8 all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/dustmasker' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/dustmasker' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/simple TMPL=xobjsimple -w -j11 --jobserver-auth=7,8 all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/dustmasker TMPL=dustmasker -w -j11 --jobserver-auth=7,8 all -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup.cpp:59: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gbseq_formatter.cpp:51: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/item_formatter.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/gbseq_formatter.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gbseq_formatter.cpp:55: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/gbseq_formatter.hpp:105:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 105 | auto_ptr m_Out; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_iter.cpp: In member function 'bool ncbi::objects::CGather_Iter::x_AddSeqEntryToStack(const ncbi::objects::CSeq_entry_Handle&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_iter.cpp:145:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 145 | auto_ptr seq_iter( new CBioseq_CI(entry, mol_type, CBioseq_CI::eLevel_Mains) ); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/feature.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:48, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/html_anchor_item.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/items/item_base.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/items/html_anchor_item.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/html_anchor_item.cpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[5]: warning: -j11 forced in submake: resetting jobserver mode. /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ @@ -39725,22 +38221,10 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker TMPL=winmasker -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/format_flags.cpp -o format_flags.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/align_format_util.cpp -o align_format_util.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showdefline.cpp -o showdefline.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showalign.cpp -o showalign.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/tabular.cpp -o tabular.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/vectorscreen.cpp -o vectorscreen.o -/usr/bin/g++ -std=gnu++14 -cIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/psi_pssm_input.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psi_pssm_input.cpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/items/gene_finder.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gene_finder.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -39750,7 +38234,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/psi_pssm_input.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:43: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -39767,46 +38251,161 @@ 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/newcleanupp.cpp:49: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/items/gene_finder.hpp:42: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_db_adapter.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/local_db_adapter.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_types.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:39: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/items/gene_finder.hpp:44: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 322 | auto_ptr m_pOpticalMapPointsDestroyer; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr m_Selector; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/items/gene_finder.hpp:113:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 113 | auto_ptr &feat_ci, | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gene_finder.cpp:78:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 78 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/seqalignfilter.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +ror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/inst_info_map.cpp -o inst_info_map.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gene_finder.cpp -o gene_finder.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/flat_qual_slots.cpp -o flat_qual_slots.o +/bin/rm -f libxformat.so .libxformat.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libxformat.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC accession_item.o basecount_item.o comment_item.o contig_item.o date_item.o dbsource_item.o defline_item.o feature_item.o genome_item.o ctrl_items.o keywords_item.o locus_item.o primary_item.o reference_item.o segment_item.o sequence_item.o source_item.o version_item.o wgs_item.o tsa_item.o flat_seqloc.o qualifiers.o context.o gather_items.o embl_gather.o genbank_gather.o flat_file_generator.o item_formatter.o embl_formatter.o genbank_formatter.o format_item_ostream.o item_ostream.o ostream_text_ostream.o origin_item.o ftable_gather.o ftable_formatter.o gbseq_formatter.o flat_file_config.o alignment_item.o gap_item.o genome_project_item.o sam_formatter.o cigar_formatter.o gather_iter.o html_anchor_item.o inst_info_map.o gene_finder.o flat_qual_slots.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxcleanup -lvalid -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lsubmit -lxalnmgr -lxobjutil -ltaxon3 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxformat.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libxformat.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxformat.so +/bin/ln -f .xformat.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xformat.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/format' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/format' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/seqalignfilter.cpp: In member function 'void ncbi::align_format::CSeqAlignFilter::ReadSeqalignSet(const std::string&, ncbi::objects::CSeq_align_set&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/seqalignfilter.cpp:516:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 516 | auto_ptr asn_in(CObjectIStream::Open(fname, eSerial_AsnText)); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/seqalignfilter.cpp: In member function 'void ncbi::align_format::CSeqAlignFilter::WriteSeqalignSet(const std::string&, const ncbi::objects::CSeq_align_set&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/seqalignfilter.cpp:522:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 522 | auto_ptr asn_out(CObjectOStream::Open(fname, eSerial_AsnText)); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 449 | auto_ptr m_ConfigFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 450 | auto_ptr m_Reg; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/align_format_util.cpp:93:1: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 93 | auto_ptr CAlignFormatUtil::m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/align_format_util.cpp: In static member function 'static bool ncbi::align_format::CAlignFormatUtil::SortHitByPercentIdentityDescendingEx(const ncbi::CRef&, const ncbi::CRef&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/align_format_util.cpp:1448:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1448 | auto_ptr seqSetInfo1( CAlignFormatUtil::GetSeqAlignSetCalcParamsFromASN(*info1)); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/align_format_util.cpp:1449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1449 | auto_ptr seqSetInfo2( CAlignFormatUtil::GetSeqAlignSetCalcParamsFromASN(*info2)); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ + -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_writer_tab.cpp -o mask_writer_tab.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_writer_seqloc.cpp -o mask_writer_seqloc.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/seqmasks_io/mask_writer_blastdb_maskinfo.cpp -o mask_writer_blastdb_maskinfo.o +/bin/rm -f libseqmasks_io.so .libseqmasks_io.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libseqmasks_io.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC mask_cmdline_args.o mask_bdb_reader.o mask_fasta_reader.o mask_writer.o mask_writer_fasta.o mask_writer_int.o mask_writer_tab.o mask_writer_seqloc.o mask_writer_blastdb_maskinfo.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lseqdb -lxobjread -lxobjutil -lxobjmgr -lblastdb -lseqset -lseq -lxser -lxncbi -llmdb -lpthread -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libseqmasks_io.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libseqmasks_io.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libseqmasks_io.so +/bin/ln -f .seqmasks_io.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.seqmasks_io.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/seqmasks_io' +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/tabular.cpp:44: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/align_format_util.cpp: In static member function 'static ncbi::align_format::CAlignFormatUtil::SSeqAlignSetCalcParams* ncbi::align_format::CAlignFormatUtil::GetSeqAlignCalcParams(const ncbi::objects::CSeq_align&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/align_format_util.cpp:4076:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 4076 | auto_ptr seqSetInfo(new SSeqAlignSetCalcParams); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ @@ -39819,9 +38418,246 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/main.cpp:34: +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/seqmasks_io' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/align_format_util.cpp: In static member function 'static ncbi::align_format::CAlignFormatUtil::SSeqAlignSetCalcParams* ncbi::align_format::CAlignFormatUtil::GetSeqAlignSetCalcParamsFromASN(const ncbi::objects::CSeq_align_set&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/align_format_util.cpp:4355:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 4355 | auto_ptr seqSetInfo(new SSeqAlignSetCalcParams); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +cd algo/winmask/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xalgowinmask UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/winmask' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/winmask' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/winmask' +cd app/dustmasker/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=dustmasker LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/winmask' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/winmask' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/dustmasker' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask TMPL=xalgowinmask -w -j21 --jobserver-auth=7,8 all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/dustmasker' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/dustmasker' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/dustmasker' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/winmask' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker.cpp -o seq_masker.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_score_mean.cpp -o seq_masker_score_mean.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp -o seq_masker_score_mean_glob.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_score_min.cpp -o seq_masker_score_min.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_util.cpp -o seq_masker_util.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_window.cpp -o seq_masker_window.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkmake[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/dustmasker' +g/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_window_ambig.cpp -o seq_masker_window_ambig.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_window_pattern.cpp -o seq_masker_window_pattern.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp -o seq_masker_window_pattern_ambig.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_ostat_factory.cpp -o seq_masker_ostat_factory.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_ostat.cpp -o seq_masker_ostat.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp -o seq_masker_ostat_ascii.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_istat_ascii.cpp -o seq_masker_istat_ascii.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_uset_simple.cpp -o seq_masker_uset_simple.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_istat_factory.cpp -o seq_masker_istat_factory.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_ostat_bin.cpp -o seq_masker_ostat_bin.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_uset_array.cpp -o seq_masker_uset_array.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_istat_bin.cpp -o seq_masker_istat_bin.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_ostat_/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/dustmasker TMPL=dustmasker -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat_ascii.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_ostat_ascii.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat_ascii.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_ostat_factory.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_ostat.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -39839,9 +38675,178 @@ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/dustmasker/dust_mask_app.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/dustmasker/dust_mask_app.cpp:35: + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat_opt.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_ostat_opt.cpp:42: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat_opt.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat_opt_ascii.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -39869,7 +38874,91 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat_bin.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_ostat_bin.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -39942,9 +39031,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/dustmasker/dust_mask_app.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/dustmasker/dust_mask_app.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -39957,10 +39049,19 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' @@ -40154,9 +39255,9 @@ | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_sdust_masker.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_score.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_score_min.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_score_min.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -40249,8 +39350,9 @@ | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.cpp:54: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_score.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_score_mean.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_score_mean.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -40341,11 +39443,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.cpp:63: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_istat_factory.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -40358,13 +39462,52 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/align_format_util.cpp:46: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_istat_ascii.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -40380,9 +39523,42 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -40455,9 +39631,14 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_score.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_score_mean_glob.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_score_mean_glob.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -40470,30 +39651,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psiblast_impl.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psiblast_impl.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:37: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -40506,26 +39669,67 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/tabular.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat_bin.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_istat_bin.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -40616,9 +39820,14 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_score.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_score_mean.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -40631,12 +39840,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -40649,20 +39858,67 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/taxFormat.cpp:51: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showalign.cpp:77: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat_oascii.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_istat_oascii.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -40753,9 +40009,14 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat_opt.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat_opt_bin.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -40768,9 +40029,88 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat_obinary.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_istat_obinary.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -40858,9 +40198,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_cache_boost.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_cache_boost.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -40873,12 +40217,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -40891,12 +40235,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -40909,14 +40253,55 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showdefline.cpp:55: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +opt.cpp -o seq_masker_ostat_opt.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_ostat_opt_ascii.cpp -o seq_masker_ostat_opt_ascii.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_uset_hash.cpp -o seq_masker_uset_hash.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_istat_oascii.cpp -o seq_masker_istat_oascii.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_ostat_opt_bin.cpp -o seq_masker_ostat_opt_bin.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_istat_obinary.cpp -o seq_masker_istat_obinary.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_cache_boost.cpp -o seq_masker_cache_boost.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-coIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_counts_converter.cpp:40: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -41007,9 +40392,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_ostat.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_gen_counts.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_gen_counts.cpp:53: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -41022,30 +40411,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/msa_pssm_input.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/msa_pssm_input.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/msa_pssm_input.hpp:38: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -41058,49 +40429,70 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/newcleanupp.cpp: In function 'typename TMapType::const_iterator ncbi::objects::s_FindInMapAsPrefix(const std::string&, const TMapType&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/newcleanupp.cpp:1187:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1187 | auto_ptr temp_str; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_prot_options.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_advprot_options.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/psiblast_options.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psiblast_iteration.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window_pattern.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window_pattern_ambig.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -41108,10 +40500,8 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psiblast_iteration.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_util.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_window_pattern_ambig.cpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -41127,84 +40517,18 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/aln_reader.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/msa_pssm_input.cpp:42: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/newcleanupp.cpp: In member function 'void ncbi::objects::CNewCleanup_imp::x_RemoveFlankingQuotes(std::string&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/newcleanupp.cpp:5849:22: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] - 5849 | for( ; first_pos <= last_pos ; ++first_pos, --last_pos ) { - | ~~~~~~~~~~^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/newcleanupp.cpp:5863:19: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] - 5863 | if( first_pos > last_pos ) { - | ~~~~~~~~~~^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/msa_pssm_input.cpp: In member function 'void ncbi::blast::CPsiBlastInputClustalW::x_ReadAsciiMsa(ncbi::CNcbiIstream&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/msa_pssm_input.cpp:125:20: warning: 'void ncbi::CAlnReader::Read(bool, bool, ncbi::objects::ILineErrorListener*)' is deprecated [-Wdeprecated-declarations] - 125 | reader.Read(false, true); - | ~~~~~~~~~~~^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/aln_reader.hpp:215:10: note: declared here - 215 | void Read( - | ^~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/msa_pssm_input.cpp: In member function 'void ncbi::blast::CPsiBlastInputClustalW::x_ExtractAlignmentData()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/msa_pssm_input.cpp:376:22: warning: comparison of integer expressions of different signedness: 'int' and 'Uint4' {aka 'unsigned int'} [-Wsign-compare] - 376 | while (k < m_Msa->dimensions->query_length && - | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup.cpp: In static member function 'static bool ncbi::objects::CCleanup::x_HasShortIntron(const ncbi::objects::CSeq_loc&, size_t)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup.cpp:2889:68: warning: comparison of integer expressions of different signedness: 'long int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare] - 2889 | if (abs((long int)this_start - (long int)prev_end) < min_len) { - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup.cpp: In static member function 'static bool ncbi::objects::CCleanup::DecodeXMLMarkChanged(std::string&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup.cpp:4167:21: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] - 4167 | idx < sizeof(transformations)/sizeof(transformations[0]); - | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/simple/simple_om.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/simple/simple_om.cpp:33: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/seq_id_handle.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/simple/simple_om.hpp:35: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showdefline.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showdefline.cpp:33: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/simple/simple_om.hpp:41: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:41: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -41223,18 +40547,18 @@ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_explorer.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnvec.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/align_format_util.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_window.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:31: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -41250,72 +40574,18 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.cpp:34: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnseq.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmatch.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmix.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/tabular.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/tabular.cpp:36: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/vectorscreen.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/vectorscreen.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:41: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/html/html.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/vectorscreen.hpp:36: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat_ascii.hpp:39: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -41331,17 +40601,11 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -mat-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/msa_pssm_input.cpp -o msa_pssm_input.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psiblast_aux_priv.cpp -o psiblast_aux_priv.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_aux_priv.cpp -o blast_aux_priv.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_advprot_options.cpp -o blast_advprot_options.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blastp_kmer_options.cpp -o blastp_kmer_options.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/version.cpp -o version.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/dustmasker/dust_mask_app.hpp:40: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_score_min.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -41351,9 +40615,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -41372,8 +40634,8 @@ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/dustmasker/dust_mask_app.hpp:40: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -41383,15 +40645,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnseq.hpp:216:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 216 | auto_ptr m_Starts; - | ^~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -41407,93 +40661,19 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/tabular.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.cpp:45: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_explorer.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnvec.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/seqalignfilter.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/general/User_object_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/general/User_object.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/seqalignfilter.cpp:35: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/aln_printer.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:41: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/bioseq_handle.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/aln_printer.cpp:36: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat_factory.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_istat_factory.cpp:35: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -41509,43 +40689,21 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_score_mean.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -41561,39 +40719,21 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_explorer.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnvec.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showalign.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window_pattern.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_window_pattern.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:31: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:159:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 159 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq ); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:168:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 168 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq, - | ^~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_util.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_window_pattern.cpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -41611,10 +40751,20 @@ | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showdefline.cpp:39: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window_ambig.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_window_ambig.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -41630,56 +40780,22 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:159:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 159 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq ); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:168:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 168 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/vectorscreen.hpp:42: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.cpp:46: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:41: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbitime.hpp:65, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_system.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbifile.hpp:53, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_istat_bin.cpp:35: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -41695,71 +40811,11 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:159:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 159 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq ); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:168:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 168 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_sdust_masker.cpp: In member function 'ncbi::CSDustMasker::TMaskList* ncbi::CSDustMasker::operator()(const ncbi::objects::CSeqVector&, const TMaskList&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_sdust_masker.cpp:103:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 103 | std::auto_ptr< TMaskList > result = duster_( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_explorer.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnvec.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/taxFormat.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/taxFormat.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/dustmasker/dust_mask_app.hpp:40: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -41767,12 +40823,11 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/taxon1/Taxon1_data_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/taxon1/Taxon1_data.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/taxon1/taxon1__.hpp:1, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/taxon1/taxon1.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/taxFormat.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -41788,84 +40843,23 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.cpp:52: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] - 94 | objects::CFastaReader::fAllSeqIds | - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here - 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] - 94 | objects::CFastaReader::fAllSeqIds | - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here - 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) - | ^~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showalign.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/pssm_engine.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psiblast_aux_priv.cpp:39: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/dustmasker/dust_mask_app.hpp:40: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -41875,8 +40869,15 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psiblast_aux_priv.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psiblast_aux_priv.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -41892,77 +40893,37 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 449 | auto_ptr m_ConfigFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker.cpp: In member function 'ncbi::CSeqMasker::TMaskList* ncbi::CSeqMasker::DoMask(const ncbi::objects::CSeqVector&, ncbi::TSeqPos, ncbi::TSeqPos) const': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker.cpp:166:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 166 | auto_ptr mask(new TMaskList); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 450 | auto_ptr m_Reg; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker.cpp:171:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 171 | auto_ptr window_ptr | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_gen_counts.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.cpp:55: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_util.hpp:188:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 188 | auto_ptr< CNcbiIstream > m_InputFile; // input file - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_util.hpp:189:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 189 | auto_ptr< CMaskReader > m_Reader; // reader used for fasta and bdb formats - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.cpp:64: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:159:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 159 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq ); | ^~~~~~~~ @@ -41975,44 +40936,21 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.cpp: In member function 'virtual void ncbi::CWinMaskApplication::Init()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.cpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 103 | auto_ptr< CArgDescriptions > arg_desc( new CArgDescriptions ); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.cpp: In member function 'virtual int ncbi::CWinMaskApplication::Run()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.cpp:252:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 252 | auto_ptr< CSeqMasker::TMaskList > mask_info( theMasker( data ) ); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.cpp:257:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 257 | auto_ptr< CSeqMasker::TMaskList > dust_info( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/seqalignfilter.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:159:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 159 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq ); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showdefline.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:168:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 168 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq, + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -42027,132 +40965,171 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/tabular.cpp:44: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_istat.cpp:32: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/dustmasker/dust_mask_app.cpp:52: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat_oascii.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/dustmasker/dust_mask_app.cpp:52: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_util.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_config.hpp:46, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_config.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_config.cpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/seqalignfilter.cpp: In member function 'void ncbi::align_format::CSeqAlignFilter::ReadSeqalignSet(const std::string&, ncbi::objects::CSeq_align_set&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/seqalignfilter.cpp:516:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 516 | auto_ptr asn_in(CObjectIStream::Open(fname, eSerial_AsnText)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/seqalignfilter.cpp: In member function 'void ncbi::align_format::CSeqAlignFilter::WriteSeqalignSet(const std::string&, const ncbi::objects::CSeq_align_set&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/seqalignfilter.cpp:522:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 522 | auto_ptr asn_out(CObjectOStream::Open(fname, eSerial_AsnText)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/simple' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/simple/simple_om.cpp -o simple_om.o -/bin/rm -f libxobjsimple.so .libxobjsimple.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libxobjsimple.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC simple_om.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lncbi_xloader_genbank -lxobjmgr -lseq -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxobjsimple.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libxobjsimple.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxobjsimple.so -/bin/ln -f .xobjsimple.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xobjsimple.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/simple' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/simple' -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/gbloader.hpp:48, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/taxFormat.cpp:42: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_gen_counts.cpp:45: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/Bioseq_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/Bioseq.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_gen_counts.cpp:39: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/align_format_util.cpp:93:1: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 93 | auto_ptr CAlignFormatUtil::m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/align_format_util.cpp: In static member function 'static bool ncbi::align_format::CAlignFormatUtil::SortHitByPercentIdentityDescendingEx(const ncbi::CRef&, const ncbi::CRef&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/align_format_util.cpp:1448:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1448 | auto_ptr seqSetInfo1( CAlignFormatUtil::GetSeqAlignSetCalcParamsFromASN(*info1)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/align_format_util.cpp:1449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1449 | auto_ptr seqSetInfo2( CAlignFormatUtil::GetSeqAlignSetCalcParamsFromASN(*info2)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showalign.cpp:50: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/taxFormat.cpp:43: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/dustmasker/dust_mask_app.cpp:55: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ @@ -42167,47 +41144,9 @@ | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_prot_options.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_advprot_options.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_advprot_options.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:37: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_prot_options.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_advprot_options.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blastp_kmer_options.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blastp_kmer_options.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:41: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -42215,19 +41154,9 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:37: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmatch.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmix.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showalign.cpp:70: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnseq.hpp:216:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 216 | auto_ptr m_Starts; - | ^~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_cache_boost.hpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -42243,45 +41172,6 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/dustmasker/dust_mask_app.cpp:55: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 449 | auto_ptr m_ConfigFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 450 | auto_ptr m_Reg; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/align_format_util.cpp: In static member function 'static ncbi::align_format::CAlignFormatUtil::SSeqAlignSetCalcParams* ncbi::align_format::CAlignFormatUtil::GetSeqAlignCalcParams(const ncbi::objects::CSeq_align&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/align_format_util.cpp:4076:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 4076 | auto_ptr seqSetInfo(new SSeqAlignSetCalcParams); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/align_format_util.cpp: In static member function 'static ncbi::align_format::CAlignFormatUtil::SSeqAlignSetCalcParams* ncbi::align_format::CAlignFormatUtil::GetSeqAlignSetCalcParamsFromASN(const ncbi::objects::CSeq_align_set&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/align_format_util.cpp:4355:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 4355 | auto_ptr seqSetInfo(new SSeqAlignSetCalcParams); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/dustmasker/dust_mask_app.cpp:58: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] 94 | objects::CFastaReader::fAllSeqIds | @@ -42297,20 +41187,16 @@ | ^~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_aux_priv.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_aux_priv.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:41: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_aux_priv.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat_obinary.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -42372,37 +41258,33 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showdefline.cpp: In member function 'ncbi::align_format::CShowBlastDefline::SScoreInfo* ncbi::align_format::CShowBlastDefline::x_GetScoreInfo(const ncbi::objects::CSeq_align&, int)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showdefline.cpp:1465:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1465 | auto_ptr score_info(new SScoreInfo); - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showdefline.cpp: In member function 'ncbi::align_format::CShowBlastDefline::SScoreInfo* ncbi::align_format::CShowBlastDefline::x_GetScoreInfoForTable(const ncbi::objects::CSeq_align_set&, int)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showdefline.cpp:1489:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1489 | auto_ptr score_info(new SScoreInfo); +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_dup_table.cpp:43: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_dup_table.cpp:39: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showdefline.cpp:1491:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1491 | auto_ptr seqSetInfo( CAlignFormatUtil::GetSeqAlignSetCalcParamsFromASN(aln)); - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ --D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/dust_filter.cpp -o dust_filter.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/rps_aux.cpp -o rps_aux.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/search_strategy.cpp -o search_strategy.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/setup_factory.cpp -o setup_factory.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/prelim_stage.cpp -o prelim_stage.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/traceback_stage.cpp -o traceback_stage.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/dust_filter.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/dust_filter.cpp:36: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_util.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -42410,10 +41292,16 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_loc_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_loc.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/dust_filter.hpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:37: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_util.hpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -42429,56 +41317,25 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showalign.cpp: In member function 'virtual void ncbi::align_format::CDisplaySeqalign::x_DisplayRowData(SAlnRowInfo*, ncbi::CNcbiOstream&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showalign.cpp:1451:69: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] - 1451 | if(m_QueryAnchoredSetIndex != -1 && m_QueryAnchoredSetIndex != rowSetsCount) { - | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showalign.cpp: In member function 'void ncbi::align_format::CDisplaySeqalign::DisplaySeqalign(ncbi::CNcbiOstream&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showalign.cpp:1926:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1926 | auto_ptr out2(CObjectOStream::Open(eSerial_AsnText, out)); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showalign.cpp:2104:33: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] - 2104 | } catch (CException e){ - | ^ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/dust_filter.hpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:159:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 159 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq ); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:168:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 168 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/setup_factory.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/search_strategy.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/search_strategy.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_counts_converter.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_counts_converter.cpp:42: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -42486,9 +41343,8 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbitime.hpp:65, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_system.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/search_strategy.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_util.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_counts_converter.cpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -42504,6 +41360,15 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_gen_counts.cpp:46: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ @@ -42516,80 +41381,39 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showalign.cpp: In function 'void ncbi::align_format::s_MakeDomainString(int, int, const std::string&, std::string&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showalign.cpp:4450:49: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'unsigned int'} [-Wsign-compare] - 4450 | for (int i = actual_first_pos, j = 0; i < domain_string.size() - 1 && j < domain_name.size(); i ++, j ++){ - | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showalign.cpp:4450:81: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'unsigned int'} [-Wsign-compare] - 4450 | for (int i = actual_first_pos, j = 0; i < domain_string.size() - 1 && j < domain_name.size(); i ++, j ++){ - | ~~^~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/dust_filter.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_util.hpp:188:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 188 | auto_ptr< CNcbiIstream > m_InputFile; // input file | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_util.hpp:189:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 189 | auto_ptr< CMaskReader > m_Reader; // reader used for fasta and bdb formats + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/prelim_stage.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/traceback_stage.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/traceback_stage.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_dup_table.cpp:44: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -42605,93 +41429,107 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/search_strategy.hpp:178:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 178 | auto_ptr m_Data; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_config.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/search_strategy.hpp:181:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 181 | auto_ptr m_OptionsBuilder; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/traceback_stage.cpp: In member function 'ncbi::CRef ncbi::blast::CBlastTracebackSearch::Run()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/traceback_stage.cpp:226:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 226 | auto_ptr omp_env; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/traceback_stage.cpp: In member function 'BlastHSPResults* ncbi::blast::CBlastTracebackSearch::RunSimple()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/traceback_stage.cpp:329:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 329 | auto_ptr omp_env; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] + 94 | objects::CFastaReader::fAllSeqIds | + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here + 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] + 94 | objects::CFastaReader::fAllSeqIds | + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here + 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) + | ^~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_util.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_util.hpp:188:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 188 | auto_ptr< CNcbiIstream > m_InputFile; // input file + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/prelim_stage.cpp: In member function 'virtual void ncbi::blast::CBlastPrelimSearch::SetNumberOfThreads(size_t)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/prelim_stage.cpp:117:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr opts_memento +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_util.hpp:189:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 189 | auto_ptr< CMaskReader > m_Reader; // reader used for fasta and bdb formats | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/prelim_stage.cpp: In member function 'int ncbi::blast::CBlastPrelimSearch::x_LaunchMultiThreadedSearch(ncbi::blast::SInternalData&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/prelim_stage.cpp:147:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 147 | auto_ptr opts_memento - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_gen_counts.hpp:47: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/prelim_stage.cpp: In member function 'ncbi::CRef ncbi::blast::CBlastPrelimSearch::Run()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/prelim_stage.cpp:216:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 216 | auto_ptr opts_memento - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] + 94 | objects::CFastaReader::fAllSeqIds | + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here + 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] + 94 | objects::CFastaReader::fAllSeqIds | + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here + 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) + | ^~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_dup_table.cpp:48: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/prelim_stage.cpp: In member function 'BlastHSPResults* ncbi::blast::CBlastPrelimSearch::ComputeBlastHSPResults(BlastHSPStream*, Uint4, bool*, std::vector*) const': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/prelim_stage.cpp:329:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 329 | auto_ptr opts_memento +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=windowmasker /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/main.cpp -o main.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=windowmasker /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.cpp -o win_mask_app.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=windowmasker /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_sdust_masker.cpp -o win_mask_sdust_masker.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie main.o win_mask_app.o win_mask_sdust_masker.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxalgowinmask -lxalgodustmask -lblast -lcomposition_adjustment -lseqmasks_io -lseqdb -lblastdb -ltables -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o windowmasker -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f windowmasker /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f windowmasker /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/windowmasker -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/uniform_search.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_window.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:41: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_types.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:39: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ @@ -42704,18 +41542,94 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/local_search.cpp:46: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_util.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_dup_table.hpp:46, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_dup_table.cpp:50: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_util.hpp:188:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 188 | auto_ptr< CNcbiIstream > m_InputFile; // input file + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_util.hpp:189:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 189 | auto_ptr< CMaskReader > m_Reader; // reader used for fasta and bdb formats + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] + 94 | objects::CFastaReader::fAllSeqIds | + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here + 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] + 94 | objects::CFastaReader::fAllSeqIds | + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here + 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) + | ^~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_gen_counts.hpp:51: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_util.hpp:188:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 188 | auto_ptr< CNcbiIstream > m_InputFile; // input file + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_util.hpp:189:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 189 | auto_ptr< CMaskReader > m_Reader; // reader used for fasta and bdb formats + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_util.cpp: In member function 'virtual bool ncbi::CWinMaskUtil::CIdSet_TextMatch::find(const ncbi::objects::CBioseq_Handle&) const': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_util.cpp:130:39: warning: 'std::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, TGetTitleFlags)' is deprecated [-Wdeprecated-declarations] + 130 | string id_str = sequence::GetTitle( bsh ); + | ~~~~~~~~~~~~~~~~~~^~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:289:8: note: declared here + 289 | string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0); + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_config.cpp:45: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_dup_table.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_gen_counts.cpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/Pssm_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/Pssm.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/local_search.cpp:38: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -42727,16 +41641,380 @@ /bin/ln -f dustmasker /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/dustmasker make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/dustmasker' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/dustmasker' +mpile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_counts_converter.cpp -o win_mask_counts_converter.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_dup_table.cpp -o win_mask_dup_table.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_gen_counts.cpp -o win_mask_gen_counts.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_util.cpp -o win_mask_util.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/win_mask_config.cpp -o win_mask_config.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/winmask/seq_masker_istat.cpp -o seq_masker_istat.o +/bin/rm -f libxalgowinmask.so .libxalgowinmask.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libxalgowinmask.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC seq_masker.o seq_masker_score_mean.o seq_masker_score_mean_glob.o seq_masker_score_min.o seq_masker_util.o seq_masker_window.o seq_masker_window_ambig.o seq_masker_window_pattern.o seq_masker_window_pattern_ambig.o seq_masker_ostat_factory.o seq_masker_ostat.o seq_masker_ostat_ascii.o seq_masker_istat_ascii.o seq_masker_uset_simple.o seq_masker_istat_factory.o seq_masker_ostat_bin.o seq_masker_uset_array.o seq_masker_istat_bin.o seq_masker_ostat_opt.o seq_masker_ostat_opt_ascii.o seq_masker_uset_hash.o seq_masker_istat_oascii.o seq_masker_ostat_opt_bin.o seq_masker_istat_obinary.o seq_masker_cache_boost.o win_mask_counts_converter.o win_mask_dup_table.o win_mask_gen_counts.o win_mask_util.o win_mask_config.o seq_masker_istat.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lseqmasks_io -lxobjread -lxobjutil -lxobjmgr -lseq -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgowinmask.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libxalgowinmask.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxalgowinmask.so +/bin/ln -f .xalgowinmask.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xalgowinmask.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/winmask' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/winmask' +cd app/winmasker/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=winmasker LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker TMPL=winmasker -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/main.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_sdust_masker.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_sdust_masker.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.cpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.cpp:63: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.cpp:34: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_search.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/local_search.cpp:49: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -42752,54 +42030,44 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_results.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:159:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 159 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq ); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:168:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 168 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.cpp:45: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -api/uniform_search.cpp -o uniform_search.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/local_search.cpp -o local_search.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_results.cpp -o blast_results.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/remote_search.cpp -o remote_search.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/query_data.cpp -o query_data.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/objmgr_query_data.cpp -o objmgr_query_data.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/objmgrfree_query_data.cpp -o objmgrfree_query_data.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.1In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_sdust_masker.cpp: In member function 'ncbi::CSDustMasker::TMaskList* ncbi::CSDustMasker::operator()(const ncbi::objects::CSeqVector&, const TMaskList&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_sdust_masker.cpp:103:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 103 | std::auto_ptr< TMaskList > result = duster_( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/query_data.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.cpp:46: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -42815,90 +42083,91 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_search.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/remote_search.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Dense_diag_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Dense_diag.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/seqalign__.hpp:1, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/remote_search.cpp:37: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.cpp:52: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] + 94 | objects::CFastaReader::fAllSeqIds | + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here + 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] + 94 | objects::CFastaReader::fAllSeqIds | + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here + 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_gen_counts.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.cpp:55: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_util.hpp:188:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 188 | auto_ptr< CNcbiIstream > m_InputFile; // input file + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/win_mask_util.hpp:189:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 189 | auto_ptr< CMaskReader > m_Reader; // reader used for fasta and bdb formats + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_search.hpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_sdust_masker.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.cpp:64: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:159:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 159 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq ); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/objmgr_query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/objmgr_query_data.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/objmgr_query_data.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:168:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 168 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq, + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.cpp: In member function 'virtual void ncbi::CWinMaskApplication::Init()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.cpp:103:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 103 | auto_ptr< CArgDescriptions > arg_desc( new CArgDescriptions ); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.cpp: In member function 'virtual int ncbi::CWinMaskApplication::Run()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.cpp:252:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 252 | auto_ptr< CSeqMasker::TMaskList > mask_info( theMasker( data ) ); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -2.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp -o bioseq_extract_data_priv.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/effsearchspace_calc.cpp -o effsearchspace_calc.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp -o blast_seqinfosrc_aux.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_dbindex.cpp -o blast_dbindex.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query_cxx.cpp -o split_query_cxx.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query_aux_priv.cpp -o split_query_aux_priv.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/objmgr_query_data.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.cpp:257:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 257 | auto_ptr< CSeqMasker::TMaskList > dust_info( + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=windowmasker /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/main.cpp -o main.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=windowmasker /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_app.cpp -o win_mask_app.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=windowmasker /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/winmasker/win_mask_sdust_masker.cpp -o win_mask_sdust_masker.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie main.o win_mask_app.o win_mask_sdust_masker.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxalgowinmask -lxalgodustmask -lblast -lcomposition_adjustment -lseqmasks_io -lseqdb -lblastdb -ltables -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o windowmasker +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f windowmasker /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f windowmasker /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/windowmasker +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blastdb_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_writer_unit_test.cpp -o seq_writer_unit_test.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blastdb_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/blastdb_format/unit_test/seq_formatter_unit_test.cpp -o seq_formatter_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie seq_writer_unit_test.o seq_formatter_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lblastdb_format -lxobjutil -lseqdb -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -lm -lpthread -o blastdb_format_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f blastdb_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastdb_format_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showalign.cpp:50: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ @@ -42911,130 +42180,157 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/objmgrfree_query_data.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmatch.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmix.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showalign.cpp:70: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnseq.hpp:216:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 216 | auto_ptr m_Starts; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 449 | auto_ptr m_ConfigFile; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/effsearchspace_calc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query_aux_priv.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 450 | auto_ptr m_Reg; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/effsearchspace_calc.hpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showalign.cpp: In member function 'virtual void ncbi::align_format::CDisplaySeqalign::x_DisplayRowData(SAlnRowInfo*, ncbi::CNcbiOstream&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showalign.cpp:1451:69: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] + 1451 | if(m_QueryAnchoredSetIndex != -1 && m_QueryAnchoredSetIndex != rowSetsCount) { + | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showalign.cpp: In member function 'void ncbi::align_format::CDisplaySeqalign::DisplaySeqalign(ncbi::CNcbiOstream&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showalign.cpp:1926:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1926 | auto_ptr out2(CObjectOStream::Open(eSerial_AsnText, out)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showalign.cpp:2104:33: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] + 2104 | } catch (CException e){ + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showalign.cpp: In function 'void ncbi::align_format::s_MakeDomainString(int, int, const std::string&, std::string&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showalign.cpp:4450:49: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'unsigned int'} [-Wsign-compare] + 4450 | for (int i = actual_first_pos, j = 0; i < domain_string.size() - 1 && j < domain_name.size(); i ++, j ++){ + | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showalign.cpp:4450:81: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string::size_type' {aka 'unsigned int'} [-Wsign-compare] + 4450 | for (int i = actual_first_pos, j = 0; i < domain_string.size() - 1 && j < domain_name.size(); i ++, j ++){ + | ~~^~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showdefline.cpp: In member function 'ncbi::align_format::CShowBlastDefline::SScoreInfo* ncbi::align_format::CShowBlastDefline::x_GetScoreInfo(const ncbi::objects::CSeq_align&, int)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showdefline.cpp:1465:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1465 | auto_ptr score_info(new SScoreInfo); | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showdefline.cpp: In member function 'ncbi::align_format::CShowBlastDefline::SScoreInfo* ncbi::align_format::CShowBlastDefline::x_GetScoreInfoForTable(const ncbi::objects::CSeq_align_set&, int)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showdefline.cpp:1489:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1489 | auto_ptr score_info(new SScoreInfo); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/showdefline.cpp:1491:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1491 | auto_ptr seqSetInfo( CAlignFormatUtil::GetSeqAlignSetCalcParamsFromASN(aln)); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/effsearchspace_calc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/effsearchspace_calc.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/gbloader.hpp:48, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/taxFormat.cpp:42: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/effsearchspace_calc.hpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/taxFormat.cpp:43: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/winmask_filter.cpp:61: +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/blastdb/bdbloader_rmt.cpp -o bdbloader_rmt.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/data_loaders/blastdb/remote_blastdb_adapter.cpp -o remote_blastdb_adapter.o +/bin/rm -f libncbi_xloader_blastdb_rmt.so .libncbi_xloader_blastdb_rmt.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libncbi_xloader_blastdb_rmt.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC bdbloader_rmt.o remote_blastdb_adapter.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lncbi_xloader_blastdb -lblast_services -lxobjmgr -lseq -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libncbi_xloader_blastdb_rmt.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libncbi_xloader_blastdb_rmt.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libncbi_xloader_blastdb_rmt.so +/bin/ln -f .ncbi_xloader_blastdb_rmt.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.ncbi_xloader_blastdb_rmt.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' +ix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/multisource_util.cpp -o multisource_util.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/criteria.cpp -o criteria.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/writedb_lmdb.cpp -o writedb_lmdb.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/seqidlist_writer.cpp -o seqidlist_writer.o +/bin/rm -f libwritedb.so .libwritedb.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libwritedb.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC writedb.o writedb_impl.o writedb_volume.o writedb_files.o writedb_isam.o writedb_gimask.o writedb_convert.o writedb_general.o writedb_column.o mask_info_registry.o taxid_set.o build_db.o multisource_util.o criteria.o writedb_lmdb.o seqidlist_writer.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lseqdb -lxobjread -lxobjmgr -lblastdb -lseqset -lseq -lgeneral -lxser -lsequtil -lxutil -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libwritedb.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libwritedb.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libwritedb.so +/bin/ln -f .writedb.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.writedb.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' +cd algo/blast/unit_tests/seqdb_reader/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=seqdb_lmdb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/seqdb_reader/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=seqdb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd objtools/blast/seqdb_writer/unit_test/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=writedb_lmdb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd objtools/blast/seqdb_writer/unit_test/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=writedb_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader TMPL=seqdb_lmdb_unit_test -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader TMPL=seqdb_unit_test -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test TMPL=writedb_unit_test -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test TMPL=writedb_lmdb_unit_test -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/criteria_unit_test.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -43125,107 +42421,27 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query_cxx.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:37: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_seqinfosrc_aux.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_seqinfosrc_aux.hpp:38: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query_aux_priv.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query_blk.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query_blk.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query_blk.cpp:34: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/simple/simple_om.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query_cxx.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/rpsblast_local.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_lmdb_unit_test.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -43334,118 +42550,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query_cxx.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query_cxx.cpp: In member function 'void ncbi::blast::CQuerySplitter::x_ComputeQueryContextsForChunks()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query_cxx.cpp:344:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 344 | auto_ptr qdpc; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -ULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query_blk.cpp -o split_query_blk.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/winmask_filter.cpp -o winmask_filter.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/subj_ranges_set.cpp -o subj_ranges_set.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/rpsblast_local.cpp -o rpsblast_local.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seedtop.cpp -o seedtop.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/cdd_pssm_input.cpp -o cdd_pssm_input.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/winmask_filter.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/winmask_filter.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:37: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_blast.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/rpsblast_local.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbitime.hpp:65, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_system.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbifile.hpp:53, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/rpsblast_local.cpp:34: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/winmask_filter.cpp:45: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_node.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_lmdb_unit_test.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -43554,19 +42661,243 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:46: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:51: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp:55: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/cdd_pssm_input.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/cdd_pssm_input.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, @@ -43574,104 +42905,34 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/cdd_pssm_input.hpp:37: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_prot_options.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_advprot_options.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/psiblast_options.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/deltablast_options.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/deltablast_options.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:37: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:35: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp: In member function 'std::string ncbi::blastdbindex::CSubjectMap_Factory_Base::extractSeqVector(TSeqData&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp:658:47: warning: 'std::string ncbi::objects::sequence::GetTitle(const ncbi::objects::CBioseq_Handle&, TGetTitleFlags)' is deprecated [-Wdeprecated-declarations] + 658 | string idstr = objects::sequence::GetTitle( bsh ); + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:289:8: note: declared here + 289 | string GetTitle(const CBioseq_Handle& hnd, TGetTitleFlags flags = 0); + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/seedtop.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seedtop.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/seedtop.hpp:42: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/magicblast.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/general/User_object_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/general/User_object.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/magicblast.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp: In member function 'void ncbi::blastdbindex::COffsetData_Factory::Save(ncbi::CNcbiOstream&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp:1409:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1409 | std::auto_ptr< CNcbiOfstream > stats; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -43687,43 +42948,17 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/psiblast.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/deltablast.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:37: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp: In static member function 'static void ncbi::blastdbindex::CDbIndex_Factory::do_create_1_2(ncbi::blastdbindex::CSequenceIStream&, const std::string&, ncbi::blastdbindex::CDbIndex::TSeqNum, ncbi::blastdbindex::CDbIndex::TSeqNum, ncbi::blastdbindex::CDbIndex::TSeqNum&, ncbi::blastdbindex::CDbIndex::TSeqNum&, const ncbi::blastdbindex::CDbIndex::SOptions&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp:1665:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1665 | std::auto_ptr< COffsetList::CDataPool > pool( + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/magicblast_options.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/magicblast_options.cpp:35: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:42: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -43731,10 +42966,12 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_reader/seqdbcommon.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_reader/seqdb.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_reader/seqdbexpert.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -43750,50 +42987,23 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_node.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_node.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; @@ -43802,87 +43012,14 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_node.cpp: In member function 'bool ncbi::blast::CBlastMasterNode::Processing()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:197:8: warning: this 'if' clause does not guard... [-Wmisleading-indentation] - 197 | do if (NCBI_NS_NCBI::IsVisibleDiagPostLevel(NCBI_NS_NCBI::eDiag_##severity)) \ - | ^~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro 'SEVERITY_POST' - 200 | #define INFO_POST(message) SEVERITY_POST(Info, message) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_node.cpp:179:65: note: in expansion of macro 'INFO_POST' - 179 | INFO_POST("Starting Chunk # " << chunk_num << " " << n->GetNodeIdStr()); - | ^~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:198:44: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' - 198 | ERR_POST(severity << message); while(0) - | ^~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro 'SEVERITY_POST' - 200 | #define INFO_POST(message) SEVERITY_POST(Info, message) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_node.cpp:179:65: note: in expansion of macro 'INFO_POST' - 179 | INFO_POST("Starting Chunk # " << chunk_num << " " << n->GetNodeIdStr()); - | ^~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:197:8: warning: this 'if' clause does not guard... [-Wmisleading-indentation] - 197 | do if (NCBI_NS_NCBI::IsVisibleDiagPostLevel(NCBI_NS_NCBI::eDiag_##severity)) \ - | ^~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro 'SEVERITY_POST' - 200 | #define INFO_POST(message) SEVERITY_POST(Info, message) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_node.cpp:202:49: note: in expansion of macro 'INFO_POST' - 202 | INFO_POST("Chunk #" << chunk_num << " completed in " << s.AsSmartString()); - | ^~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:198:44: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' - 198 | ERR_POST(severity << message); while(0) - | ^~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro 'SEVERITY_POST' - 200 | #define INFO_POST(message) SEVERITY_POST(Info, message) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_node.cpp:202:49: note: in expansion of macro 'INFO_POST' - 202 | INFO_POST("Chunk #" << chunk_num << " completed in " << s.AsSmartString()); - | ^~~~~~~~~ -.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/deltablast_options.cpp -o deltablast_options.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/deltablast.cpp -o deltablast.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/magicblast_options.cpp -o magicblast_options.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/magicblast.cpp -o magicblast.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_node.cpp -o blast_node.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_usage_report.cpp -o blast_usage_report.o -/bin/rm -f libxblast.so .libxblast.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libxblast.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC blast_aux.o blast_options_cxx.o blast_options_local_priv.o blast_options_builder.o blast_setup_cxx.o blast_seqalign.o blast_options_handle.o blast_nucl_options.o disc_nucl_options.o blast_prot_options.o psiblast_options.o blast_rps_options.o blastx_options.o tblastx_options.o tblastn_options.o rpstblastn_options.o phiblast_nucl_options.o phiblast_prot_options.o pssm_engine.o local_blast.o remote_blast.o seqinfosrc_seqvec.o seqinfosrc_seqdb.o seqinfosrc_bioseq.o seqsrc_multiseq.o seqsrc_seqdb.o seqsrc_query_factory.o bl2seq.o blast_objmgr_tools.o repeats_filter_cxx.o blast_mtlock.o psibl2seq.o local_db_adapter.o psiblast.o psiblast_impl.o psiblast_iteration.o psi_pssm_input.o msa_pssm_input.o psiblast_aux_priv.o blast_aux_priv.o blast_advprot_options.o blastp_kmer_options.o version.o dust_filter.o rps_aux.o search_strategy.o setup_factory.o prelim_stage.o traceback_stage.o uniform_search.o local_search.o blast_results.o remote_search.o query_data.o objmgr_query_data.o objmgrfree_query_data.o bioseq_extract_data_priv.o effsearchspace_calc.o blast_seqinfosrc_aux.o blast_dbindex.o split_query_cxx.o split_query_aux_priv.o split_query_blk.o winmask_filter.o subj_ranges_set.o rpsblast_local.o seedtop.o cdd_pssm_input.o deltablast_options.o deltablast.o magicblast_options.o magicblast.o blast_node.o blast_usage_report.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lblast -lseqdb -lseqset -lseq -lgeneral -lxser -lxconnect -lsequtil -ltables -lxutil -lxncbi -llmdb -lpthread -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblast.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libxblast.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxblast.so -/bin/ln -f .xblast.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xblast.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/api' -cd algo/blast/proteinkmer/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=proteinkmer UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer TMPL=proteinkmer -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmer.cpp -o blastkmer.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp -o blastkmerindex.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmeroptions.cpp -o blastkmeroptions.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp -o blastkmerresults.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp -o blastkmerutils.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/mhfile.cpp -o mhfile.o -/u -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/seqalignfilter.cpp -o seqalignfilter.o + -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/seqalignfilter.cpp -o seqalignfilter.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/taxFormat.cpp -o taxFormat.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/aln_printer.cpp -o aln_printer.o /bin/rm -f libalign_format.so .libalign_format.so.stamp @@ -43892,43 +43029,26 @@ /bin/ln -f .align_format.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.align_format.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format' -cd algo/blast/blastinput/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blastinput UNIX_PROJ="" sources= configurables=configurables.null -cd objtools/align_format/unit_test/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=align_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +cd objtools/align_format/unit_test/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=align_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format/unit_test' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format/unit_test' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format/unit_test' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format/unit_test' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format/unit_test' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput TMPL=blastinput -w -j11 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test TMPL=align_format_unit_test -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_input.cpp -o blast_input.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_fasta_input.cpp -o blast_fasta_input.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_scope_src.cpp -o blast_scope_src.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_args.cpp -o blast_args.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/cmdline_flags.cpp -o cmdline_flags.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_input_aux.cpp -o blast_input_aux.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wnmake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format/unit_test' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test TMPL=align_format_unit_test -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format/unit_test' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=align_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp -o showdefline_unit_test.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=align_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/showalign_unit_test.cpp -o showalign_unit_test.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=align_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/blast_test_util.cpp -o blast_test_util.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=align_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp -o vectorscreen_unit_test.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=align_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp -o tabularinof_unit_test.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -44038,7 +43158,121 @@ 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/kblastapi.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp:44: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -44147,18 +43381,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/mhfile.cpp:84: warning: ignoring '#pragma ivdep ' [-Wunknown-pragmas] - 84 | #pragma ivdep - | -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/mhfile.cpp:91: warning: ignoring '#pragma ivdep ' [-Wunknown-pragmas] - 91 | #pragma ivdep - | -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/mhfile.cpp:98: warning: ignoring '#pragma ivdep ' [-Wunknown-pragmas] - 98 | #pragma ivdep - | In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp:51: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -44264,12 +43489,30 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/showalign_unit_test.cpp:48: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -44378,12 +43621,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:447: warning: ignoring '#pragma ivdep ' [-Wunknown-pragmas] - 447 | #pragma ivdep - | In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/showalign_unit_test.cpp:48: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/blast_test_util.cpp:60: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -44492,11 +43732,596 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp:44: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp: In function 'ncbi::CRef s_GetScope()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:558:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 558 | auto_ptr ois + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp: In member function 'void writedb::CBuildDatabase_WGS_gap::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp:2825:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2825 | auto_ptr ois + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=writedb_lmdb_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_lmdb_unit_test.cpp -o writedb_lmdb_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie writedb_lmdb_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lwritedb -lseqdb -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o writedb_lmdb_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f writedb_lmdb_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f writedb_lmdb_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/writedb_lmdb_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/blast_test_util.hpp:49, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/blast_test_util.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/blast_test_util.hpp:41: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp:34: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp:43: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbitime.hpp:65, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_system.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbifile.hpp:53, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp:35: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_explorer.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnvec.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:46, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/showalign_unit_test.cpp:43: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbitime.hpp:65, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_system.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbifile.hpp:53, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/showalign_unit_test.cpp:35: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/blast_test_util.cpp:46: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:48: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:49: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/gbloader.hpp:48, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp:47: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:51: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/blast_test_util.cpp:49: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp:48: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=seqdb_lmdb_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_lmdb_unit_test.cpp -o seqdb_lmdb_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie seqdb_lmdb_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lseqdb -lwritedb -lxobjutil -lblastdb -lxobjread -lvariation -lsubmit -lxlogging -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -lm -lpthread -o seqdb_lmdb_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_lmdb_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f seqdb_lmdb_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/seqdb_lmdb_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 449 | auto_ptr m_ConfigFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 450 | auto_ptr m_Reg; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp:42: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp:42: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp:46: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp:46: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:48, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/blast_test_util.cpp:55: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:49: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp: In static member function 'static void vectorscreen::CVecscreenTest::VecscreenDisplay()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp:93:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 93 | auto_ptr in(CObjectIStream::Open(eSerial_AsnText, is)); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp: In static member function 'static void showdefline::CShowBlastDeflineTest::GetDeflineInfo(TestUtil::CBlastOM::ELocation)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp:74:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 74 | auto_ptr in(CObjectIStream::Open(eSerial_AsnText, is)); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp:99:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 99 | auto_ptr + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp:101:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 101 | auto_ptr + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex' +/usr/bin/g++ -std=gnu++14 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/sequence_istream_fasta.cpp -o sequence_istream_fasta.o +/usr/bin/g++ -std=gnu++14 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/sequence_istream_bdb.cpp -o sequence_istream_bdb.o +/usr/bin/g++ -std=gnu++14 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex.cpp -o dbindex.o +/usr/bin/g++ -std=gnu++14 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex_factory.cpp -o dbindex_factory.o +/usr/bin/g++ -std=gnu++14 -c -DDO_INLINE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/dbindex_search.cpp -o dbindex_search.o +/bin/rm -f libxalgoblastdbindex.so .libxalgoblastdbindex.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libxalgoblastdbindex.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC sequence_istream_fasta.o sequence_istream_bdb.o dbindex.o dbindex_factory.o dbindex_search.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast -lseqdb -lxobjread -lxobjutil -lxobjmgr -lseqset -lseq -lxser -lxutil -lxncbi -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxalgoblastdbindex.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libxalgoblastdbindex.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxalgoblastdbindex.so +/bin/ln -f .xalgoblastdbindex.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xalgoblastdbindex.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex' +cd algo/blast/api/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xblast UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/dbindex/makeindex/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=makeindex LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/api' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/makeindex TMPL=makeindex -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api TMPL=xblast -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_aux.cpp -o blast_aux.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_options_cxx.cpp -o blast_options_cxx.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_options_local_priv.cpp -o blast_options_local_priv.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_options_builder.cpp -o blast_options_builder.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_setup_cxx.cpp -o blast_setup_cxx.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_seqalign.cpp -o blast_seqalign.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_options_handle.cpp -o blast_options_handle.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_nucl_options.cpp -o blast_nucl_options.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/disc_nucl_options.cpp -o disc_nucl_options.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_prot_options.cpp -o blast_prot_options.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psiblast_options.cpp -o psiblast_options.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_rps_options.cpp -o blast_rps_options.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blastx_options.cpp -o blastx_options.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/tblastx_options.cpp -o tblastx_options.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/tblastn_options.cpp -o tblastn_options.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/rpstblastn_options.cpp -o rpstblastn_options.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/phiblast_nucl_options.cpp -o phiblast_nucl_options.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/phiblast_prot_options.cpp -o phiblast_prot_options.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_setup_cxx.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/makeindex/mkindex_app.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -44605,17 +44430,7 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp:51: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) +ILD_TIME, NCBI_BUILD_TAG_PROXY) | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ @@ -44698,9 +44513,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ @@ -44716,27 +44528,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/blast_test_util.cpp:60: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/makeindex/mkindex_app.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/makeindex/main.cpp:47: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -44845,65 +44642,45 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/kblastapi.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_scope_src.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_aux.cpp:49: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:45: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_aux.cpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/mhfile.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/mhfile.hpp:175:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 175 | auto_ptr m_MmappedIndex; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbitime.hpp:65, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_system.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbifile.hpp:53, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/mhfile.hpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/mhfile.hpp:178:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 178 | auto_ptr m_MmappedData; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_args.cpp:41: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_prot_options.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_rps_options.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/rpstblastn_options.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/rpstblastn_options.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -44911,16 +44688,13 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbitime.hpp:65, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_system.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_args.cpp:39: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/mhfile.cpp: In member function 'void ncbi::blast::CMinHashFile::GetMinHits(int, int&, std::vector&) const': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/mhfile.cpp:77:25: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] - 77 | if (hits.size() < numHashes) - | ~~~~~~~~~~~~^~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ @@ -44933,80 +44707,14 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_args.cpp:51: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_args.cpp:54: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blastx_args.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blastx_args.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_nucl_options.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/phiblast_nucl_options.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/phiblast_nucl_options.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -45014,7 +44722,10 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -45030,37 +44741,48 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerutils.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/mhfile.hpp:175:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 175 | auto_ptr m_MmappedIndex; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_prot_options.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_rps_options.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_rps_options.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/mhfile.hpp:178:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 178 | auto_ptr m_MmappedData; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blastn_args.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blastn_args.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_prot_options.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/phiblast_prot_options.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/phiblast_prot_options.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -45068,7 +44790,10 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -45084,11 +44809,27 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/makeindex/main.cpp:42: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:37: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_seqalign.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_seqalign.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -45096,14 +44837,10 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_seqalign.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp: In function 'void ncbi::neighbor_query(const std::vector >&, const uint64_t*, std::vector >&, blast::CMinHashFile&, int, int, double, TBlastKmerPrelimScoreVector&, BlastKmerStats&, int)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:807:38: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] - 807 | if (last_oid == *i) - | ~~~~~~~~~^~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ @@ -45118,8 +44855,11 @@ | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmer.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_prot_options.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_prot_options.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -45127,10 +44867,10 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/util/sequtil/sequtil_convert.hpp:34, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmer.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -45146,87 +44886,80 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/blast_test_util.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/blast_test_util.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/dbindex/sequence_istream_fasta.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:49: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/blast_test_util.hpp:41: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; - | ^~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/pssm_engine.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_nucl_options.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_nucl_options.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/tblastn_args.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/tblastn_args.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_setup_cxx.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -45234,7 +44967,11 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbitime.hpp:65, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_system.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbifile.hpp:53, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/util/util_misc.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_setup_cxx.cpp:35: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -45250,10 +44987,14 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_input.cpp:36: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_nucl_options.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/disc_nucl_options.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/disc_nucl_options.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -45262,9 +45003,21 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_loc_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_loc.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_input.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:37: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -45283,11 +45036,11 @@ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/rmblastn_args.hpp:21, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/rmblastn_args.cpp:20: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_prot_options.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/tblastx_options.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/tblastx_options.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -45295,7 +45048,10 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -45313,12 +45069,9 @@ | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_explorer.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnvec.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/showalign_unit_test.cpp:43: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_options_cxx.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -45326,10 +45079,10 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbitime.hpp:65, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_system.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbifile.hpp:53, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/showalign_unit_test.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -45337,22 +45090,24 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerindex.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp:91: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_blast.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/local_blast.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerindex.hpp:37: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -45374,26 +45129,26 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerutils.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:46: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/mhfile.hpp:175:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 175 | auto_ptr m_MmappedIndex; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/mhfile.hpp:178:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 178 | auto_ptr m_MmappedData; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_scope_src.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_prot_options.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_advprot_options.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/psiblast_options.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psiblast_options.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -45409,22 +45164,25 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp: In member function 'void ncbi::blast::CBlastKmerResults::GetTSL(ncbi::blast::TSeqLocVector&, ncbi::CRef) const': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp:75:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 75 | auto_ptr ssl(new SSeqLoc(*seqloc, *scope)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/kblastapi.cpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_options_handle.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_exception.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_options_handle.cpp:35: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -45443,11 +45201,8 @@ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blastp_args.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blastp_args.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/remote_blast.cpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -45455,7 +45210,9 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbitime.hpp:65, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_system.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/remote_blast.cpp:35: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -45471,48 +45228,22 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:48: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp: In member function 'virtual void ncbi::CMkIndexApplication::Init()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp:67:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 67 | auto_ptr< CArgDescriptions > arg_desc( new CArgDescriptions ); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:36: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_prot_options.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_advprot_options.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/tblastn_options.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/tblastn_options.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -45520,8 +45251,10 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/iterator.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -45537,65 +45270,35 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:49: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmer.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmer.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:51: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/blast_test_util.cpp:46: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_options_local_priv.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_options_local_priv.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_exception.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_options_local_priv.cpp:35: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_input_aux.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_prot_options.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blastx_options.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blastx_options.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -45603,22 +45306,15 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:37: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerutils.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmer.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/kblastapi.cpp:50: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/mhfile.hpp:175:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 175 | auto_ptr m_MmappedIndex; - | ^~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/mhfile.hpp:178:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 178 | auto_ptr m_MmappedData; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; @@ -45635,43 +45331,25 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp:38: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_options_builder.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp:34: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -45687,147 +45365,230 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_options_handle.cpp: In member function 'char* ncbi::blast::CBlastOptionsHandle::GetFilterString() const': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_options_handle.cpp:100:35: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] + 100 | return m_Opts->GetFilterString(); /* NCBI_FAKE_WARNING */ + | ~~~~~~~~~~~~~~~~~~~~~~~^~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here + 178 | NCBI_DEPRECATED char* GetFilterString() const; + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_options_handle.cpp: In member function 'void ncbi::blast::CBlastOptionsHandle::SetFilterString(const char*, bool)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_options_handle.cpp:106:28: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] + 106 | m_Opts->SetFilterString(f, clear); /* NCBI_FAKE_WARNING */ + | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here + 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerutils.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:46: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/mhfile.hpp:175:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 175 | auto_ptr m_MmappedIndex; +-D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/pssm_engine.cpp -o pssm_engine.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/local_blast.cpp -o local_blast.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/remote_blast.cpp -o remote_blast.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp -o seqinfosrc_seqvec.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp -o seqinfosrc_seqdb.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp -o seqinfosrc_bioseq.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/mhfile.hpp:178:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 178 | auto_ptr m_MmappedData; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/remote_blast.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/search_strategy.hpp:178:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 178 | auto_ptr m_Data; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/search_strategy.hpp:181:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 181 | auto_ptr m_OptionsBuilder; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; +blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqsrc_multiseq.cpp -o seqsrc_multiseq.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqsrc_seqdb.cpp -o seqsrc_seqdb.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqsrc_query_factory.cpp -o seqsrc_query_factory.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/bl2seq.cpp -o bl2seq.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_objmgr_tools.cpp -o blast_objmgr_tools.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/repeats_filter_cxx.cpp -o repeats_filter_cxx.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_mtlock.cpp -o blast_mtlock.o +/usr/bin/g++ -std=gnu++14 -c -Wall -WWdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=align_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp -o aln_printer_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie showdefline_unit_test.o showalign_unit_test.o blast_test_util.o vectorscreen_unit_test.o tabularinof_unit_test.o aln_printer_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lxcgi -lxhtml -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o align_format_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f align_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f align_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/align_format_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format/unit_test' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format/unit_test' +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/seqsrc_multiseq.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqsrc_multiseq.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqsrc_multiseq.cpp:35: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqinfosrc_bioseq.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqinfosrc_bioseq.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_seqinfosrc.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerutils.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerindex.hpp:44: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/mhfile.hpp:175:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 175 | auto_ptr m_MmappedIndex; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/mhfile.hpp:178:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 178 | auto_ptr m_MmappedData; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/seqinfosrc_seqdb.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqinfosrc_seqdb.cpp:35: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_scope_src.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/bl2seq.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/bl2seq.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_types.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/bl2seq.hpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqinfosrc_seqvec.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp:41: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_setup.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqsrc_seqdb.cpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqsrc_seqdb.cpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -45843,27 +45604,10 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp:43: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_objmgr_tools.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -45871,10 +45615,8 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbitime.hpp:65, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_system.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbifile.hpp:53, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/bioseq_handle.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -45890,43 +45632,20 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_input_aux.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/blast_test_util.cpp:49: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/gbloader.hpp:48, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp:47: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp:41: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqsrc_query_factory.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqsrc_query_factory.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -45942,6 +45661,21 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqsrc_multiseq.cpp: In function 'BlastSeqSrc* ncbi::blast::MultiSeqBlastSeqSrcInit(TSeqLocVector&, EBlastProgramType, bool)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seqsrc_multiseq.cpp:562:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 562 | auto_ptr args + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=makembindex /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/makeindex/main.cpp -o main.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=makembindex /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/dbindex/makeindex/mkindex_app.cpp -o mkindex_app.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie main.o mkindex_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxalgoblastdbindex -lblast -lcomposition_adjustment -lseqdb -lblastdb -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -ltables -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o makembindex +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f makembindex /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f makembindex /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/makembindex +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: @@ -45951,148 +45685,47 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:48, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/blast_test_util.cpp:55: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:49: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/repeats_filter_cxx.cpp:44: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/iterator.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/repeats_filter_cxx.cpp:39: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp:42: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:46: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp:46: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, +no-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psibl2seq.cpp -o psibl2seq.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/local_db_adapter.cpp -o local_db_adapter.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psiblast.cpp -o psiblast.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psiblast_impl.cpp -o psiblast_impl.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psiblast_iteration.cpp -o psiblast_iteration.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psi_pssm_input.cpp -o psi_pssm_input.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=forIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/tblastx_args.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/tblastx_args.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/psibl2seq.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psibl2seq.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -46100,13 +45733,8 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:38: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_types.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:39: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -46122,119 +45750,50 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 449 | auto_ptr m_ConfigFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 450 | auto_ptr m_Reg; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:47: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp:48: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp: In static member function 'static void vectorscreen::CVecscreenTest::VecscreenDisplay()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/vectorscreen_unit_test.cpp:93:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 93 | auto_ptr in(CObjectIStream::Open(eSerial_AsnText, is)); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/psiblast_args.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_input_aux.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_objmgr_tools.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp: In static member function 'static void showdefline::CShowBlastDeflineTest::GetDeflineInfo(TestUtil::CBlastOM::ELocation)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp:74:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 74 | auto_ptr in(CObjectIStream::Open(eSerial_AsnText, is)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp:99:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 99 | auto_ptr - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/dust_filter.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_objmgr_tools.cpp:51: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:159:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 159 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq ); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/showdefline_unit_test.cpp:101:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 101 | auto_ptr - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:168:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 168 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq, + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp:42: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ @@ -46247,58 +45806,13 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/tabularinof_unit_test.cpp:46: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -o-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blastp_args.cpp -o blastp_args.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blastn_args.cpp -o blastn_args.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/rmblastn_args.cpp -o rmblastn_args.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blastx_args.cpp -o blastx_args.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/tblastn_args.cpp -o tblastn_args.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/tblastx_args.cpp -o tblastx_args.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/psiblast_args.cpp -o psiblast_args.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/rpsblast_args.cpp -o rpsblast_args.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/rpstblastn_args.cpp -o rpstblastn_args.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/igblastn_args.cpp -o igblastn_args.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/igblastp_args.cpp -o igblastp_args.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/deltablast_args.cpp -o deltablast_args.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FOIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/igblastp_args.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/igblastp_args.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_db_adapter.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/local_db_adapter.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -46306,7 +45820,8 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_types.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:39: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -46325,11 +45840,10 @@ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/igblastn_args.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/igblastn_args.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/psiblast.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psiblast.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -46337,7 +45851,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -46356,11 +45870,10 @@ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/psiblast_args.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/psiblast_args.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psiblast_impl.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psiblast_impl.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -46368,7 +45881,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -46387,11 +45900,12 @@ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/rpstblastn_args.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/rpstblastn_args.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_prot_options.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_advprot_options.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/psiblast_options.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psiblast_iteration.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -46399,7 +45913,10 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_id.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psiblast_iteration.cpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -46415,14 +45932,17 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, +mat-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/msa_pssm_input.cpp -o msa_pssm_input.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psiblast_aux_priv.cpp -o psiblast_aux_priv.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_aux_priv.cpp -o blast_aux_priv.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_advprot_options.cpp -o blast_advprot_options.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blastp_kmer_options.cpp -o blastp_kmer_options.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/version.cpp -o version.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/deltablast_args.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/deltablast_args.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/psi_pssm_input.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psi_pssm_input.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -46430,7 +45950,9 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/psi_pssm_input.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -46446,33 +45968,11 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/rpsblast_args.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/msa_pssm_input.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/msa_pssm_input.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -46480,7 +45980,9 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/msa_pssm_input.hpp:38: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -46496,143 +45998,144 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/igblastp_args.cpp: In constructor 'ncbi::blast::CIgBlastpAppArgs::CIgBlastpAppArgs()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/igblastp_args.cpp:67:16: warning: unused variable 'kFilterByDefault' [-Wunused-variable] - 67 | const bool kFilterByDefault = false; - | ^~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; +-D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/dust_filter.cpp -o dust_filter.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/rps_aux.cpp -o rps_aux.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/search_strategy.cpp -o search_strategy.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/setup_factory.cpp -o setup_factory.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/prelim_stage.cpp -o prelim_stage.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/traceback_stage.cpp -o traceback_stage.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/pssm_engine.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psiblast_aux_priv.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psiblast_aux_priv.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/psiblast_aux_priv.cpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/aln_reader.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/msa_pssm_input.cpp:42: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_aux_priv.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_aux_priv.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_aux_priv.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/msa_pssm_input.cpp: In member function 'void ncbi::blast::CPsiBlastInputClustalW::x_ReadAsciiMsa(ncbi::CNcbiIstream&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/msa_pssm_input.cpp:125:20: warning: 'void ncbi::CAlnReader::Read(bool, bool, ncbi::objects::ILineErrorListener*)' is deprecated [-Wdeprecated-declarations] + 125 | reader.Read(false, true); + | ~~~~~~~~~~~^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/aln_reader.hpp:215:10: note: declared here + 215 | void Read( + | ^~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/msa_pssm_input.cpp: In member function 'void ncbi::blast::CPsiBlastInputClustalW::x_ExtractAlignmentData()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/msa_pssm_input.cpp:376:22: warning: comparison of integer expressions of different signedness: 'int' and 'Uint4' {aka 'unsigned int'} [-Wsign-compare] + 376 | while (k < m_Msa->dimensions->query_length && + | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/dust_filter.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/dust_filter.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_loc_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_loc.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/dust_filter.hpp:38: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, +api/uniform_search.cpp -o uniform_search.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/local_search.cpp -o local_search.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_results.cpp -o blast_results.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/remote_search.cpp -o remote_search.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/query_data.cpp -o query_data.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/objmgr_query_data.cpp -o objmgr_query_data.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/objmgrfree_query_data.cpp -o objmgrfree_query_data.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.1In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/magicblast_args.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/magicblast_args.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_prot_options.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_advprot_options.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blastp_kmer_options.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blastp_kmer_options.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -46640,7 +46143,10 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -46656,20 +46162,14 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/kblastp_args.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/kblastp_args.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_prot_options.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_advprot_options.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_advprot_options.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -46677,7 +46177,10 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -46693,963 +46196,54 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -sr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/pearson.cpp -o pearson.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/kblastapi.cpp -o kblastapi.o -/bin/rm -f libproteinkmer.so .libproteinkmer.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libproteinkmer.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC blastkmer.o blastkmerindex.o blastkmeroptions.o blastkmerresults.o blastkmerutils.o mhfile.o pearson.o kblastapi.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libproteinkmer.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libproteinkmer.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libproteinkmer.so -/bin/ln -f .proteinkmer.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.proteinkmer.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer' -cd algo/blast/igblast/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=igblast UNIX_PROJ="" sources= configurables=configurables.null -cd algo/blast/proteinkmer/unit_test/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=proteinkmer_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=aalookup_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/igblast' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=aascan_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=blastdiag_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=blastengine_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=blastextend_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=blastfilter_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/igblast' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/igblast' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/igblast' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/igblast' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/unit_test TMPL=proteinkmer_unit_test -w -j11 --jobserver-auth=7,8 all -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/igblast TMPL=igblast -w -j11 --jobserver-auth=7,8 all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=blastdiag_unit_test -w -j11 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=blastengine_unit_test -w -j11 --jobserver-auth=7,8 all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=aascan_unit_test -w -j11 --jobserver-auth=7,8 all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=aalookup_unit_test -w -j11 --jobserver-auth=7,8 all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=blastextend_unit_test -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=blastfilter_unit_test -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/magicblast_args.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/dust_filter.hpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:159:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 159 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq ); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:168:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 168 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq, + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/setup_factory.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastdiag_unit_test.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/unit_test/proteinkmer_unit_test.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/magicblast_args.cpp: In member function 'virtual void ncbi::blast::CMapperMTArgs::ExtractAlgorithmOptions(const ncbi::CArgs&, ncbi::blast::CBlastOptions&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/magicblast_args.cpp:205:59: warning: 'unsigned int ncbi::GetCpuCount()' is deprecated [-Wdeprecated-declarations] - 205 | const int kMaxValue = static_cast(GetCpuCount()); - | ~~~~~~~~~~~^~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbifile.hpp:53, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_system.hpp:479:14: note: declared here - 479 | unsigned int GetCpuCount(void) - | ^~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_asn1_input.cpp:35: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/search_strategy.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/search_strategy.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -47657,7 +46251,9 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbitime.hpp:65, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_system.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/search_strategy.cpp:35: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -47675,54 +46271,21 @@ | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/dust_filter.cpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_asn1_input.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=align_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/align_format/unit_test/aln_printer_unit_test.cpp -o aln_printer_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie showdefline_unit_test.o showalign_unit_test.o blast_test_util.o vectorscreen_unit_test.o tabularinof_unit_test.o aln_printer_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxalnmgr -lxcgi -lxhtml -lseqmasks_io -lseqdb -lblast_services -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o align_format_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f align_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f align_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/align_format_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format/unit_test' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format/unit_test' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=blasthits_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/igblast/igblast.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/igblast/igblast.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/prelim_stage.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -47746,171 +46309,58 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=blasthits_unit_test -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blasthits_unit_test.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/search_strategy.hpp:178:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 178 | auto_ptr m_Data; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/igblast/igblast.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/search_strategy.hpp:181:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 181 | auto_ptr m_OptionsBuilder; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/traceback_stage.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/traceback_stage.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:37: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/prelim_stage.cpp: In member function 'virtual void ncbi::blast::CBlastPrelimSearch::SetNumberOfThreads(size_t)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/prelim_stage.cpp:117:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr opts_memento + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -47926,77 +46376,70 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/igblast/igblast.cpp:42: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/prelim_stage.cpp: In member function 'int ncbi::blast::CBlastPrelimSearch::x_LaunchMultiThreadedSearch(ncbi::blast::SInternalData&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/prelim_stage.cpp:147:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 147 | auto_ptr opts_memento | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/prelim_stage.cpp: In member function 'ncbi::CRef ncbi::blast::CBlastPrelimSearch::Run()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/prelim_stage.cpp:216:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 216 | auto_ptr opts_memento | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/prelim_stage.cpp: In member function 'BlastHSPResults* ncbi::blast::CBlastPrelimSearch::ComputeBlastHSPResults(BlastHSPStream*, Uint4, bool*, std::vector*) const': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/prelim_stage.cpp:329:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 329 | auto_ptr opts_memento | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/igblast/igblast.cpp: In member function 'void ncbi::blast::CIgBlast::x_FindDJAln(ncbi::CRef&, ncbi::CRef&, std::string, bool, ncbi::objects::ENa_strand, int, int, bool)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/igblast/igblast.cpp:997:43: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'int' [-Wsign-compare] - 997 | if ((*it)->GetSeqStart(1) > max_allowed_j_deletion) keep = false; - | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/simple/simple_om.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/unit_test/proteinkmer_unit_test.cpp:50: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_results.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbitime.hpp:65, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_system.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/unit_test/proteinkmer_unit_test.cpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp: In member function 'void BlastExtend::testGapAlignment::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:259:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 259 | auto_ptr qsl( - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:262:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 262 | auto_ptr ssl( +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/uniform_search.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_types.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:39: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -48012,37 +46455,42 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp: In member function 'void BlastExtend::testGreedyAlignment::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:345:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 345 | auto_ptr qsl( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:348:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 348 | auto_ptr ssl( +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/traceback_stage.cpp: In member function 'ncbi::CRef ncbi::blast::CBlastTracebackSearch::Run()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/traceback_stage.cpp:226:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 226 | auto_ptr omp_env; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp: In member function 'void BlastExtend::testGreedyAlignmentWithBadStart::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:457:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 457 | auto_ptr qsl( +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/local_search.cpp:46: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/Pssm_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/Pssm.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/local_search.cpp:38: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:461:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 461 | auto_ptr ssl( +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/traceback_stage.cpp: In member function 'BlastHSPResults* ncbi::blast::CBlastTracebackSearch::RunSimple()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/traceback_stage.cpp:329:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 329 | auto_ptr omp_env; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/simple/simple_om.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_search.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/local_search.cpp:49: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -48063,10 +46511,17 @@ | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/query_data.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -48084,11 +46539,20 @@ | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/simple/simple_om.hpp:41: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/objmgrfree_query_data.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -48106,10 +46570,23 @@ | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_search.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/remote_search.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Dense_diag_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Dense_diag.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/seqalign__.hpp:1, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/remote_search.cpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -48125,440 +46602,11 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:42: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api/dust_filter.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:58: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:159:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 159 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq ); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:168:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 168 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blastdiag_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastdiag_unit_test.cpp -o blastdiag_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blastdiag_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o blastdiag_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdiag_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f blastdiag_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastdiag_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=blastoptions_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In static member function 'static void CBlastFilterTest::x_TestLowerCaseMaskWith(ncbi::objects::ENa_strand, bool)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:189:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 189 | auto_ptr qsl( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=blastoptions_unit_test -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In function 'void blastfilter::x_TestGetFilteredQueryRegions(ncbi::objects::ENa_strand)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:333:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 333 | auto_ptr qsl( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::SegFilter::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:473:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 473 | auto_ptr qsl(CTestObjMgr::Instance().CreateSSeqLoc(id)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::RepeatsFilter::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:513:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 513 | auto_ptr qsl( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::WindowMasker::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:575:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 575 | auto_ptr - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::RepeatsFilter_OnSeqInterval::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:625:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 625 | auto_ptr qsl( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::RepeatsAndDustFilter::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:707:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 707 | auto_ptr qsl1(CTestObjMgr::Instance().CreateSSeqLoc(id1)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:712:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 712 | auto_ptr qsl2(CTestObjMgr::Instance().CreateSSeqLoc(id2)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::WindowMaskerAndDustFilter::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:734:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 734 | auto_ptr qsl1(CTestObjMgr::Instance().CreateSSeqLoc(id1)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:739:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 739 | auto_ptr qsl2(CTestObjMgr::Instance().CreateSSeqLoc(id2)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::WindowMasker_OnSeqInterval::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:772:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 772 | auto_ptr - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::RepeatsFilter_NoHitsFound::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:807:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 807 | auto_ptr qsl( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::WindowMasker_NoHitsFound::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:822:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 822 | auto_ptr qsl - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::RepeatsFilterWithMissingParameter::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:838:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 838 | auto_ptr qsl(CTestObjMgr::Instance().CreateSSeqLoc(id)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::WindowMaskerWithMissingParameter::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:851:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 851 | auto_ptr qsl(CTestObjMgr::Instance().CreateSSeqLoc(id)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp: In member function 'void AalookupTestFixture::GetSeqBlk(std::string)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp:99:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 99 | auto_ptr ssl(CTestObjMgr::Instance().CreateSSeqLoc(id, eNa_strand_unknown)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::CombineRepeatAndLowerCaseMask::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:1135:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1135 | auto_ptr qsl( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::CombineRepeatAndDustFilter::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:1178:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1178 | auto_ptr qsl( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::FilterLocNuclBoth::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:1212:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1212 | auto_ptr qsl( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::FilterLocNuclPlus::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:1242:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1242 | auto_ptr qsl( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::FilterLocNuclMinus::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:1272:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1272 | auto_ptr qsl( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::FilterLocProtein::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:1305:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1305 | auto_ptr qsl(CTestObjMgr::Instance().CreateSSeqLoc(id)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::MaskProteinSequence::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:1349:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1349 | auto_ptr qsl(CTestObjMgr::Instance().CreateSSeqLoc(id)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::MaskNucleotideBothStrands::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:1399:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1399 | auto_ptr qsl(CTestObjMgr::Instance().CreateSSeqLoc(id, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::FilterMultipleQueriesLocNuclPlus::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:1484:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1484 | auto_ptr qsl1( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:1487:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1487 | auto_ptr qsl2( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:1490:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1490 | auto_ptr qsl3( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp: In constructor 'AascanTestFixture::AascanTestFixture()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp:105:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 105 | auto_ptr ssl - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp:140:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 140 | auto_ptr subject_ssl - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerutils.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmer.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/unit_test/proteinkmer_unit_test.cpp:56: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/mhfile.hpp:175:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 175 | auto_ptr m_MmappedIndex; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/mhfile.hpp:178:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 178 | auto_ptr m_MmappedData; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -RTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/magicblast_args.cpp -o magicblast_args.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/kblastp_args.cpp -o kblastp_args.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_asn1_input.cpp -o blast_asn1_input.o -/bin/rm -f libblastinput.so .libblastinput.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libblastinput.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC blast_input.o blast_fasta_input.o blast_scope_src.o blast_args.o cmdline_flags.o blast_input_aux.o blastp_args.o blastn_args.o rmblastn_args.o blastx_args.o tblastn_args.o tblastx_args.o psiblast_args.o rpsblast_args.o rpstblastn_args.o igblastn_args.o igblastp_args.o deltablast_args.o magicblast_args.o kblastp_args.o blast_asn1_input.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxblast -lalign_format -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lseqdb -lxobjread -lxobjread -lvariation -lsubmit -lxlogging -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lxutil -lncbi_xloader_genbank -lncbi_xreader_id2 -lncbi_xreader -lscoremat -lseqset -lseq -lxser -lxutil -lxncbi -llmdb -lpthread -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastinput.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libblastinput.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libblastinput.so -/bin/ln -f .blastinput.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.blastinput.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=blastsetup_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=blastsetup_unit_test -w -j11 --jobserver-auth=7,8 all In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api/blast_setup.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blasthits_unit_test.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -48566,166 +46614,37 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp: In member function 'void blastengine::testBlastpPrelimSearch::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:452:29: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] - 452 | options->SetFilterString("L"); /* NCBI_FAKE_WARNING */ - | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_nucl_options.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:53: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here - 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blasthits_unit_test.cpp: In member function 'void blasthits::BlastTargetSequence::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blasthits_unit_test.cpp:116:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 116 | auto_ptr subj(CTestObjMgr::Instance().CreateSSeqLoc(sid)); + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:37: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/bl2seq.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/objmgr_query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/objmgr_query_data.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/objmgr_query_data.cpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -48741,43 +46660,62 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/effsearchspace_calc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/effsearchspace_calc.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbitime.hpp:65, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_system.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbifile.hpp:53, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/util/util_misc.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/effsearchspace_calc.hpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=aalookup_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp -o aalookup_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie aalookup_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o aalookup_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f aalookup_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f aalookup_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/aalookup_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=gapinfo_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=gapinfo_unit_test -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/gapinfo_unit_test.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +2.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/bioseq_extract_data_priv.cpp -o bioseq_extract_data_priv.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/effsearchspace_calc.cpp -o effsearchspace_calc.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp -o blast_seqinfosrc_aux.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_dbindex.cpp -o blast_dbindex.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query_cxx.cpp -o split_query_cxx.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query_aux_priv.cpp -o split_query_aux_priv.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_search.hpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/objmgr_query_data.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_version.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/winmask_filter.cpp:61: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -48868,264 +46806,31 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::RemoteOptionsTest::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:73:47: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] - 73 | BOOST_CHECK_NO_THROW(opts.SetFilterString("m L", false)); /* NCBI_FAKE_WARNING */ - | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:180:9: note: in definition of macro 'BOOST_CHECK_NO_THROW_IMPL_EX' - 180 | S; \ - | ^ -/usr/include/boost/test/tools/old/interface.hpp:147:45: note: in expansion of macro 'BOOST_CHECK_NO_THROW_IMPL' - 147 | #define BOOST_CHECK_NO_THROW( S ) BOOST_CHECK_NO_THROW_IMPL( S, CHECK ) - | ^~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/bl2seq.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here - 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::testCalcLinkHSPCutoffs::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:334:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 334 | auto_ptr qsl( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:337:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 337 | auto_ptr ssl( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::testCalcLinkHSPCutoffsSmallDB::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:503:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 503 | auto_ptr qsl( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:506:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 506 | auto_ptr ssl( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::testCalcLinkHSPResetGapProb::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:591:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 591 | auto_ptr qsl( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:594:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 594 | auto_ptr ssl( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::testHitSavingParamNewSomeInvalidKbp::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:855:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 855 | auto_ptr qsl1( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:858:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 858 | auto_ptr qsl2( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:861:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 861 | auto_ptr qsl3( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::testHitSavingParamNewGappedTblastnLargeSubjectSequence::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:941:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 941 | auto_ptr qsl1( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::testHitSavingParamNewGappedTblastnMidsizeSubjectSequence::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1012:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1012 | auto_ptr qsl1( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::testHitSavingParamUpdateMultipleCalls::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1080:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1080 | auto_ptr qsl1( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::testHitSavingParamNewGappedTblastnSmallSubjectSequence::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1168:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1168 | auto_ptr qsl1( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::testInitialWordParamNewSomeInvalidKbp::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1237:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1237 | auto_ptr qsl1( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1240:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1240 | auto_ptr qsl2( - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1243:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1243 | auto_ptr qsl3( +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_seqinfosrc_aux.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_seqinfosrc_aux.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_seqinfosrc_aux.hpp:38: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::testRemoteFilterString::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1329:28: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] - 1329 | opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ - | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here - 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1333:28: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] - 1333 | opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ - | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here - 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1338:28: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] - 1338 | opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ - | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here - 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1340:28: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] - 1340 | opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ - | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here - 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1344:28: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] - 1344 | opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ - | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here - 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1346:28: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] - 1346 | opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ - | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here - 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1350:28: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] - 1350 | opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ - | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here - 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1352:28: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] - 1352 | opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ - | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here - 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1356:28: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] - 1356 | opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ - | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here - 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1358:28: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] - 1358 | opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ - | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here - 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); - | ^~~~~~~~~~~~~~~ -t+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_author.cpp -o cleanup_author.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_pub.cpp -o cleanup_pub.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/newcleanupp.cpp -o newcleanupp.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/capitalization_string.cpp -o capitalization_string.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/fix_feature_id.cpp -o fix_feature_id.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/cleanup/cleanup_message.cpp -o cleanup_message.o -/bin/rm -f libxcleanup.so .libxcleanup.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libxcleanup.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC autogenerated_cleanup.o autogenerated_extended_cleanup.o cleanup.o cleanup_utils.o gene_qual_normalization.o cleanup_user_object.o cleanup_authoIn file included from /usr/include/boost/test/test_tools.hpp:45, - from /usr/include/boost/test/unit_test.hpp:18, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:68: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::testOptionsDeepCopy::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1397:56: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] - 1397 | BOOST_CHECK_EQUAL(string(optsClone->GetFilterString()), string("L;m;")); /* NCBI_FAKE_WARNING */ - | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here - 178 | NCBI_DEPRECATED char* GetFilterString() const; - | ^~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=aascan_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp -o aascan_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie aascan_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o aascan_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f aascan_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f aascan_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/aascan_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=gencode_singleton_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=gencode_singleton_unit_test -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=blastextend_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp -o blastextend_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blastextend_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o blastextend_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastextend_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f blastextend_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastextend_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=hspfilter_besthit_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=hspfilter_besthit_unit_test -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; @@ -49143,8 +46848,7 @@ 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/gencode_singleton_unit_test.cpp:39: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/rpsblast_local.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -49253,9 +46957,43 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +ULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query_blk.cpp -o split_query_blk.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/winmask_filter.cpp -o winmask_filter.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/subj_ranges_set.cpp -o subj_ranges_set.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/rpsblast_local.cpp -o rpsblast_local.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seedtop.cpp -o seedtop.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/cdd_pssm_input.cpp -o cdd_pssm_input.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query_cxx.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:37: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/hspfilter_besthit_unit_test.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_node.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -49364,369 +47102,381 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/effsearchspace_calc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query_aux_priv.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/effsearchspace_calc.hpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:42: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api/dust_filter.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:45: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:159:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 159 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq ); - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/simple/simple_om.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query_cxx.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:168:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 168 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq, - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query_aux_priv.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query_blk.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query_blk.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query_blk.cpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::SetupSubjectsProt::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:485:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 485 | auto_ptr sseqloc(CTestObjMgr::Instance().CreateSSeqLoc(id)); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:490:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 490 | auto_ptr - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::SetupSubjectsProtRange::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:516:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 516 | auto_ptr sseqloc( +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/winmask_filter.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/winmask_filter.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:522:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 522 | auto_ptr +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::SetupSubjectsNuclPlusStrandFiltered::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:549:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 549 | auto_ptr sl(m_Om->CreateSSeqLoc(id, kRange, kStrand)); - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::SetupSubjectsNuclMinusStrandFiltered::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:576:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 576 | auto_ptr sl(m_Om->CreateSSeqLoc(id, kRange, kStrand)); - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query_cxx.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::SetupSubjectsNuclBothStrandFiltered::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:603:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 603 | auto_ptr sl(m_Om->CreateSSeqLoc(id, kRange, kStrand)); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::SetupSubjectsNuclPlusStrand::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:632:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 632 | auto_ptr sl(m_Om->CreateSSeqLoc(id, range, kStrand)); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query_cxx.cpp: In member function 'void ncbi::blast::CQuerySplitter::x_ComputeQueryContextsForChunks()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/split_query_cxx.cpp:344:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 344 | auto_ptr qdpc; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:635:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 635 | auto_ptr +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_blast.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/rpsblast_local.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbitime.hpp:65, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_system.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbifile.hpp:53, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/rpsblast_local.cpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::SetupSubjectsNuclMinusStrand::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:659:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 659 | auto_ptr sl(m_Om->CreateSSeqLoc(id, range, kStrand)); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:661:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 661 | auto_ptr - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::SetupSubjectsNuclBothStrand::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:685:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 685 | auto_ptr sl(m_Om->CreateSSeqLoc(id, range, kStrand)); +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/seedtop.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/seedtop.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/seedtop.hpp:42: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:688:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 688 | auto_ptr +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::GetSequenceNCBI4NA_NoSentinels::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:758:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 758 | auto_ptr sl( - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::GetSequenceNCBI2NA::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:773:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 773 | auto_ptr sl( +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/psiblast.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/deltablast.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::GetGapOnlySequenceNCBI2NA::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:788:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 788 | auto_ptr sl( +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::GetGapInSequenceNCBI2NA::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:811:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 811 | auto_ptr sl( - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::testEffSearchSpaceCalculator_Ungapped::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:952:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 952 | auto_ptr sseqloc(CTestObjMgr::Instance().CreateSSeqLoc(id)); +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/winmask_filter.cpp:45: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:957:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 957 | auto_ptr - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::testEffSearchSpaceCalculatorNoSideEffects::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:978:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 978 | auto_ptr sseqloc(CTestObjMgr::Instance().CreateSSeqLoc(id)); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:983:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 983 | auto_ptr +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/cdd_pssm_input.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/cdd_pssm_input.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/cdd_pssm_input.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::testMitochondrialGeneticCode::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:1046:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1046 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(id, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::testMainSetup::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:1071:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1071 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(id, - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::testSetupWithZeroLengthSequence::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:1237:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1237 | auto_ptr ssl1(CTestObjMgr::Instance().CreateSSeqLoc(id1, kStrand)); +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/magicblast_options.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/magicblast_options.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:1238:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1238 | auto_ptr ssl2(CTestObjMgr::Instance().CreateEmptySSeqLoc(id2)); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:1239:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1239 | auto_ptr ssl3(CTestObjMgr::Instance().CreateSSeqLoc(id3, kStrand)); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/magicblast.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/general/User_object_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/general/User_object.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/magicblast.cpp:35: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::GetSubjectTranslations::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:1281:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1281 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(id, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::GetMixedFrameQuery::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:1323:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1323 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(id, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_prot_options.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_advprot_options.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/psiblast_options.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/deltablast_options.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/deltablast_options.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/scoremat/PssmWithParameters.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::GetMixedFrameQueryOnOneStrand::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:1362:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1362 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(id, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -r.o cleanup_pub.o newcleanupp.o capitalization_string.o fix_feature_id.o cleanup_message.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxobjutil -lvalid -lxregexp -lregexp -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcleanup.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libxcleanup.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxcleanup.so -/bin/ln -f .xcleanup.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xcleanup.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/cleanup' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/cleanup' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=hspfilter_culling_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=hspfilter_culling_unit_test -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/hspfilter_culling_unit_test.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/winmask/seq_masker_istat.hpp:367:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 367 | std::auto_ptr< CComponentVersionInfo > fmt_version; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/gencode_singleton_unit_test.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_node.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -49734,7 +47484,11 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -49750,545 +47504,147 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/igblast' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/igblast/igblast.cpp -o igblast.o -/bin/rm -f libigblast.so .libigblast.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libigblast.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC igblast.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libigblast.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libigblast.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libigblast.so -/bin/ln -f .igblast.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.igblast.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/igblast' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/igblast' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=hspstream_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=hspstream_unit_test -w -j11 --jobserver-auth=7,8 all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=blastengine_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp -o blastengine_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blastengine_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o blastengine_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastengine_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f blastengine_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastengine_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=linkhsp_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=linkhsp_unit_test -w -j11 --jobserver-auth=7,8 all -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/hspstream_unit_test.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=gapinfo_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/gapinfo_unit_test.cpp -o gapinfo_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie gapinfo_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxconnect -lxncbi -llmdb -lpthread -lm -lpthread -o gapinfo_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f gapinfo_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f gapinfo_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/gapinfo_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=msa2pssm_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=msa2pssm_unit_test -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=proteinkmer_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/unit_test/proteinkmer_unit_test.cpp -o proteinkmer_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie proteinkmer_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o proteinkmer_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f proteinkmer_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f proteinkmer_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/proteinkmer_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=ntlookup_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=ntlookup_unit_test -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=hspfilter_besthit_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/hspfilter_besthit_unit_test.cpp -o hspfilter_besthit_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie hspfilter_besthit_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o hspfilter_besthit_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f hspfilter_besthit_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f hspfilter_besthit_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/hspfilter_besthit_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=ntscan_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=ntscan_unit_test -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_node.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_node.cpp: In member function 'bool ncbi::blast::CBlastMasterNode::Processing()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:197:8: warning: this 'if' clause does not guard... [-Wmisleading-indentation] + 197 | do if (NCBI_NS_NCBI::IsVisibleDiagPostLevel(NCBI_NS_NCBI::eDiag_##severity)) \ + | ^~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro 'SEVERITY_POST' + 200 | #define INFO_POST(message) SEVERITY_POST(Info, message) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_node.cpp:179:65: note: in expansion of macro 'INFO_POST' + 179 | INFO_POST("Starting Chunk # " << chunk_num << " " << n->GetNodeIdStr()); + | ^~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:198:44: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' + 198 | ERR_POST(severity << message); while(0) + | ^~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro 'SEVERITY_POST' + 200 | #define INFO_POST(message) SEVERITY_POST(Info, message) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_node.cpp:179:65: note: in expansion of macro 'INFO_POST' + 179 | INFO_POST("Starting Chunk # " << chunk_num << " " << n->GetNodeIdStr()); + | ^~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:197:8: warning: this 'if' clause does not guard... [-Wmisleading-indentation] + 197 | do if (NCBI_NS_NCBI::IsVisibleDiagPostLevel(NCBI_NS_NCBI::eDiag_##severity)) \ + | ^~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro 'SEVERITY_POST' + 200 | #define INFO_POST(message) SEVERITY_POST(Info, message) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_node.cpp:202:49: note: in expansion of macro 'INFO_POST' + 202 | INFO_POST("Chunk #" << chunk_num << " completed in " << s.AsSmartString()); + | ^~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:198:44: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' + 198 | ERR_POST(severity << message); while(0) + | ^~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro 'SEVERITY_POST' + 200 | #define INFO_POST(message) SEVERITY_POST(Info, message) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_node.cpp:202:49: note: in expansion of macro 'INFO_POST' + 202 | INFO_POST("Chunk #" << chunk_num << " completed in " << s.AsSmartString()); + | ^~~~~~~~~ +.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/deltablast_options.cpp -o deltablast_options.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/deltablast.cpp -o deltablast.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/magicblast_options.cpp -o magicblast_options.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/magicblast.cpp -o magicblast.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_node.cpp -o blast_node.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/api/blast_usage_report.cpp -o blast_usage_report.o +/bin/rm -f libxblast.so .libxblast.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libxblast.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC blast_aux.o blast_options_cxx.o blast_options_local_priv.o blast_options_builder.o blast_setup_cxx.o blast_seqalign.o blast_options_handle.o blast_nucl_options.o disc_nucl_options.o blast_prot_options.o psiblast_options.o blast_rps_options.o blastx_options.o tblastx_options.o tblastn_options.o rpstblastn_options.o phiblast_nucl_options.o phiblast_prot_options.o pssm_engine.o local_blast.o remote_blast.o seqinfosrc_seqvec.o seqinfosrc_seqdb.o seqinfosrc_bioseq.o seqsrc_multiseq.o seqsrc_seqdb.o seqsrc_query_factory.o bl2seq.o blast_objmgr_tools.o repeats_filter_cxx.o blast_mtlock.o psibl2seq.o local_db_adapter.o psiblast.o psiblast_impl.o psiblast_iteration.o psi_pssm_input.o msa_pssm_input.o psiblast_aux_priv.o blast_aux_priv.o blast_advprot_options.o blastp_kmer_options.o version.o dust_filter.o rps_aux.o search_strategy.o setup_factory.o prelim_stage.o traceback_stage.o uniform_search.o local_search.o blast_results.o remote_search.o query_data.o objmgr_query_data.o objmgrfree_query_data.o bioseq_extract_data_priv.o effsearchspace_calc.o blast_seqinfosrc_aux.o blast_dbindex.o split_query_cxx.o split_query_aux_priv.o split_query_blk.o winmask_filter.o subj_ranges_set.o rpsblast_local.o seedtop.o cdd_pssm_input.o deltablast_options.o deltablast.o magicblast_options.o magicblast.o blast_node.o blast_usage_report.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lblast -lseqdb -lseqset -lseq -lgeneral -lxser -lxconnect -lsequtil -ltables -lxutil -lxncbi -llmdb -lpthread -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxblast.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libxblast.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxblast.so +/bin/ln -f .xblast.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xblast.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/api' +cd algo/blast/blastinput/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=blastinput UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/proteinkmer/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=proteinkmer UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer TMPL=proteinkmer -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput TMPL=blastinput -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmer.cpp -o blastkmer.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp -o blastkmerindex.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmeroptions.cpp -o blastkmeroptions.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp -o blastkmerresults.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp -o blastkmerutils.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/mhfile.cpp -o mhfile.o +/umake[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_input.cpp -o blast_input.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_fasta_input.cpp -o blast_fasta_input.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_scope_src.cpp -o blast_scope_src.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_args.cpp -o blast_args.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/cmdline_flags.cpp -o cmdline_flags.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_input_aux.cpp -o blast_input_aux.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blastp_args.cpp -o blastp_args.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blastn_args.cpp -o blastn_args.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/rmblastn_args.cpp -o rmblastn_args.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blastx_args.cpp -o blastx_args.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/tblastn_args.cpp -o tblastn_args.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/tblastx_args.cpp -o tblastx_args.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/psiblast_args.cpp -o psiblast_args.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/rpsblast_args.cpp -o rpsblast_args.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/rpstblastn_args.cpp -o rpstblastn_args.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/igblastn_args.cpp -o igblastn_args.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/igblastp_args.cpp -o igblastp_args.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/deltablast_args.cpp -o deltablast_args.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FO/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/mhfile.cpp:84: warning: ignoring '#pragma ivdep ' [-Wunknown-pragmas] + 84 | #pragma ivdep + | +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/mhfile.cpp:91: warning: ignoring '#pragma ivdep ' [-Wunknown-pragmas] + 91 | #pragma ivdep + | +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/mhfile.cpp:98: warning: ignoring '#pragma ivdep ' [-Wunknown-pragmas] + 98 | #pragma ivdep + | In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/kblastapi.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -50397,27 +47753,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=gencode_singleton_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/gencode_singleton_unit_test.cpp -o gencode_singleton_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie gencode_singleton_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o gencode_singleton_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f gencode_singleton_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f gencode_singleton_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/gencode_singleton_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=optionshandle_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=optionshandle_unit_test -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/optionshandle_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -50526,7 +47863,44 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:447: warning: ignoring '#pragma ivdep ' [-Wunknown-pragmas] + 447 | #pragma ivdep + | +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/mhfile.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/mhfile.hpp:175:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 175 | auto_ptr m_MmappedIndex; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbitime.hpp:65, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_system.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbifile.hpp:53, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/mhfile.hpp:36: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/mhfile.hpp:178:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 178 | auto_ptr m_MmappedData; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/mhfile.cpp: In member function 'void ncbi::blast::CMinHashFile::GetMinHits(int, int&, std::vector&) const': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/mhfile.cpp:77:25: warning: comparison of integer expressions of different signedness: 'std::vector::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] + 77 | if (hits.size() < numHashes) + | ~~~~~~~~~~~~^~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_app_util.cpp -o blast_app_util.o +/bin/rm -f libblast_app_util.a .libblast_app_util.a.stamp +ar cr libblast_app_util.a blast_app_util.o +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblast_app_util.a /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libblast_app_util.a /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libblast_app_util.a +/bin/ln -f .blast_app_util.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.blast_app_util.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_scope_src.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ @@ -50534,270 +47908,13 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:45: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../core -DNCBI_APP_BUILT_AS=blasthits_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blasthits_unit_test.cpp -o blasthits_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blasthits_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o blasthits_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blasthits_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f blasthits_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blasthits_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=phiblast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=phiblast_unit_test -w -j11 --jobserver-auth=7,8 all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=hspfilter_culling_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/hspfilter_culling_unit_test.cpp -o hspfilter_culling_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie hspfilter_culling_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o hspfilter_culling_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f hspfilter_culling_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f hspfilter_culling_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/hspfilter_culling_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=prelimsearch_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=prelimsearch_unit_test -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/phiblast_unit_test.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp:37: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/kblastapi.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ @@ -50805,15 +47922,23 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/psiblast_args.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/psiblast_args.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -50821,7 +47946,131 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:38: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blastp_args.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blastp_args.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:38: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/deltablast_args.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/deltablast_args.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:38: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/igblastp_args.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/igblastp_args.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:38: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/rmblastn_args.hpp:21, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/rmblastn_args.cpp:20: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:38: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -50840,8 +48089,8 @@ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/hspstream_unit_test.cpp:42: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_input_aux.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -50849,8 +48098,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -50868,10 +48116,20 @@ | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/igblastn_args.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/igblastn_args.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:38: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -50887,32 +48145,78 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blastn_args.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blastn_args.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:38: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp: In member function 'void msa2pssm::QueryNotFoundInMsa::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp:55:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 55 | auto_ptr pssm_input; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/kblastp_args.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/kblastp_args.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:38: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -50928,15 +48232,57 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_input.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_loc_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_loc.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_input.cpp:35: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; @@ -50944,9 +48290,11 @@ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/optionshandle_unit_test.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/rpsblast_args.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -50954,8 +48302,26 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:38: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blastx_args.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blastx_args.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:38: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -50971,25 +48337,67 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerutils.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/mhfile.hpp:175:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 175 | auto_ptr m_MmappedIndex; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/mhfile.hpp:178:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 178 | auto_ptr m_MmappedData; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:37: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -51005,43 +48413,210 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp: In member function 'void LinkHspTestFixture::setupLinkHspInputTblastn()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:235:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 235 | auto_ptr qsl( +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerindex.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmerindex.cpp:91: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerindex.hpp:37: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:240:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 240 | auto_ptr qsl( +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/tblastx_args.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/tblastx_args.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:38: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp: In member function 'void LinkHspTestFixture::setupLinkHspInputBlastn()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:391:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 391 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(seqid, range)); - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp: In function 'void ncbi::neighbor_query(const std::vector >&, const uint64_t*, std::vector >&, blast::CMinHashFile&, int, int, double, TBlastKmerPrelimScoreVector&, BlastKmerStats&, int)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmerutils.cpp:807:38: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] + 807 | if (last_oid == *i) + | ~~~~~~~~~^~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp: In member function 'AllCutoffScores* LinkHspTestFixture::setupCutoffScores(bool, Int8, Uint4, Uint4, int)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:433:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 433 | auto_ptr qsl(CTestObjMgr::Instance().CreateSSeqLoc(*qid, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmer.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/util/sequtil/sequtil_convert.hpp:34, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmer.cpp:34: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:438:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 438 | auto_ptr qsl(CTestObjMgr::Instance().CreateSSeqLoc(*qid)); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_scope_src.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp: In member function 'void NtlookupTestFixture::SetUpQuery(Uint4)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp:99:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 99 | auto_ptr ssl(CTestObjMgr::Instance().CreateSSeqLoc( - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/igblastp_args.cpp: In constructor 'ncbi::blast::CIgBlastpAppArgs::CIgBlastpAppArgs()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/igblastp_args.cpp:67:16: warning: unused variable 'kFilterByDefault' [-Wunused-variable] + 67 | const bool kFilterByDefault = false; + | ^~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/tblastn_args.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/tblastn_args.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:38: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -51050,7 +48625,9 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/rpstblastn_args.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/rpstblastn_args.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -51058,8 +48635,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:38: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -51075,7 +48651,254 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp:40: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_input_aux.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/magicblast_args.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/magicblast_args.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:38: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_args.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbitime.hpp:65, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_system.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_args.cpp:39: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/iterator.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:35: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_scope_src.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ @@ -51088,10 +48911,148 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/phiblast_unit_test.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/kblastapi.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerutils.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:46: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/mhfile.hpp:175:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 175 | auto_ptr m_MmappedIndex; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/mhfile.hpp:178:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 178 | auto_ptr m_MmappedData; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp: In member function 'void ncbi::blast::CBlastKmerResults::GetTSL(ncbi::blast::TSeqLocVector&, ncbi::CRef) const': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmerresults.cpp:75:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 75 | auto_ptr ssl(new SSeqLoc(*seqloc, *scope)); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_asn1_input.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -51099,8 +49060,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -51116,91 +49076,451 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp: In member function 'void TestFixture::SetUpQuery(Uint4, ncbi::objects::ENa_strand)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp:127:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 127 | auto_ptr ssl(CTestObjMgr::Instance().CreateSSeqLoc(id,strand)); - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerutils.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerindex.hpp:44: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/mhfile.hpp:175:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 175 | auto_ptr m_MmappedIndex; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp: In member function 'void TestFixture::SetUpSubject(Uint4)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp:197:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 197 | auto_ptr +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/mhfile.hpp:178:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 178 | auto_ptr m_MmappedData; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmer.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/blastkmer.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerutils.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:46, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmer.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/kblastapi.cpp:50: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/mhfile.hpp:175:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 175 | auto_ptr m_MmappedIndex; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/mhfile.hpp:178:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 178 | auto_ptr m_MmappedData; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerutils.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:46: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/mhfile.hpp:175:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 175 | auto_ptr m_MmappedIndex; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/mhfile.hpp:178:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 178 | auto_ptr m_MmappedData; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/magicblast_args.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:56, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_args.cpp:51: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp: In member function 'void prelimsearch::SplitNucleotideQuery::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp:144:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 144 | auto_ptr q_ssl(CTestObjMgr::Instance().CreateSSeqLoc(q_id, kRange, kStrand)); +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp: In member function 'void prelimsearch::BuildCStd_seg_blastn::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp:173:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 173 | auto_ptr q_ssl(CTestObjMgr::Instance().CreateSSeqLoc(q_id, kRange, kStrand)); +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/psiblast_args.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_input_aux.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp: In member function 'void prelimsearch::BuildCStd_seg_tblastx::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp:210:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 210 | auto_ptr q_ssl(CTestObjMgr::Instance().CreateSSeqLoc(q_id, kRange, kStrand)); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_args.cpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_asn1_input.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=writedb_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/writedb_unit_test.cpp -o writedb_unit_test.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=writedb_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/blast/seqdb_writer/unit_test/criteria_unit_test.cpp -o criteria_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie writedb_unit_test.o criteria_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lwritedb -lseqdb -lxobjread -lvariation -lsubmit -lxlogging -lxobjutil -lblastdb -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o writedb_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f writedb_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f writedb_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/writedb_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:46: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_fasta_input.cpp:47: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/magicblast_args.cpp: In member function 'virtual void ncbi::blast::CMapperMTArgs::ExtractAlgorithmOptions(const ncbi::CArgs&, ncbi::blast::CBlastOptions&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/magicblast_args.cpp:205:59: warning: 'unsigned int ncbi::GetCpuCount()' is deprecated [-Wdeprecated-declarations] + 205 | const int kMaxValue = static_cast(GetCpuCount()); + | ~~~~~~~~~~~^~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbifile.hpp:53, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_system.hpp:479:14: note: declared here + 479 | unsigned int GetCpuCount(void) + | ^~~~~~~~~~~ +sr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/pearson.cpp -o pearson.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/kblastapi.cpp -o kblastapi.o +/bin/rm -f libproteinkmer.so .libproteinkmer.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libproteinkmer.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC blastkmer.o blastkmerindex.o blastkmeroptions.o blastkmerresults.o blastkmerutils.o mhfile.o pearson.o kblastapi.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libproteinkmer.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libproteinkmer.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libproteinkmer.so +/bin/ln -f .proteinkmer.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.proteinkmer.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer' +cd algo/blast/format/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xblastformat UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/format' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd algo/blast/igblast/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=igblast UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/igblast' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd algo/blast/proteinkmer/unit_test/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=proteinkmer_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=aalookup_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=aascan_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=blastdiag_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=blastengine_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=blastextend_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=blastfilter_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=blasthits_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/format' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=blastoptions_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/igblast' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=blastsetup_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=gapinfo_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=gencode_singleton_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=hspfilter_besthit_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=hspfilter_culling_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=hspstream_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=linkhsp_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=msa2pssm_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/igblast' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/format' +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/igblast' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/format' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/igblast' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/format' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format TMPL=xblastformat -w -j21 --jobserver-auth=7,8 all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=msa2pssm_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp -o msa2pssm_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie msa2pssm_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o msa2pssm_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f msa2pssm_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f msa2pssm_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/msa2pssm_unit_test +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/igblast TMPL=igblast -w -j21 --jobserver-auth=7,8 all make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=psibl2seq_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/unit_test TMPL=proteinkmer_unit_test -w -j21 --jobserver-auth=7,8 all +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=aascan_unit_test -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=blastextend_unit_test -w -j21 --jobserver-auth=7,8 all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/format' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastfmtutil.cpp -o blastfmtutil.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml_format.cpp -o blastxml_format.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml2_format.cpp -o blastxml2_format.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blast_format.cpp -o blast_format.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/data4xmlformat.cpp -o data4xmlformat.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/data4xml2format.cpp -o data4xml2format.o +/usr/bin/g++ -std=gnu++1make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=psibl2seq_unit_test -w -j11 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=aalookup_unit_test -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=hspstream_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/hspstream_unit_test.cpp -o hspstream_unit_test.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=hspstream_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/hspstream_test_util.cpp -o hspstream_test_util.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie hspstream_unit_test.o hspstream_test_util.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o hspstream_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f hspstream_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f hspstream_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/hspstream_unit_test +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=psiblast_iteration_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=blastdiag_unit_test -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=blasthits_unit_test -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=psiblast_iteration_unit_test -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=blastfilter_unit_test -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=blastengine_unit_test -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/psibl2seq_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/unit_test/proteinkmer_unit_test.cpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -51219,6 +49539,60 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -51273,6 +49647,30 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -51288,12 +49686,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -51306,12 +49704,35 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/psiblast_iteration_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastdiag_unit_test.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -51349,7 +49770,22 @@ 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = N/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +CBI_SBUILDINFO_DEFAULT()) | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ @@ -51420,45 +49856,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=blastoptions_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp -o blastoptions_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blastoptions_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o blastoptions_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastoptions_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f blastoptions_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastoptions_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=pssmcreate_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=pssmcreate_unit_test -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssm_test_util.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ + ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -51468,7 +49869,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' @@ -51500,6 +49902,8 @@ | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) @@ -51510,12 +49914,27 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -51549,12 +49968,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -51567,15 +49980,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ + ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) | ^~~~~~~~~~~~~~~ @@ -51585,12 +49993,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -51603,12 +50011,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -51621,9 +50029,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -51660,9 +50068,14 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=blastoptions_unit_test -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blasthits_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -51771,76 +50184,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/psibl2seq.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/psibl2seq_unit_test.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=linkhsp_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp -o linkhsp_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie linkhsp_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o linkhsp_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f linkhsp_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f linkhsp_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/linkhsp_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=pssmenginefreqratios_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=pssmenginefreqratios_unit_test -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=blastsetup_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp -o blastsetup_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blastsetup_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o blastsetup_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastsetup_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f blastsetup_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastsetup_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=querydata_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=querydata_unit_test -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -51949,25 +50295,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=prelimsearch_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp -o prelimsearch_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie prelimsearch_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o prelimsearch_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f prelimsearch_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f prelimsearch_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/prelimsearch_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=queryinfo_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -52076,65 +50406,25 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=queryinfo_unit_test -w -j11 --jobserver-auth=7,8 all -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/simple/simple_om.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/psibl2seq_unit_test.cpp:50: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/pssm_engine.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:58: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=phiblast_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/phiblast_unit_test.cpp -o phiblast_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie phiblast_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o phiblast_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f phiblast_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f phiblast_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/phiblast_unit_test +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=remote_blast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=blastsetup_unit_test -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=remote_blast_unit_test -w -j11 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=gencode_singleton_unit_test -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -52243,54 +50533,21 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:56, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssm_test_util.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:64: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blast_format.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/vecscreen_run.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -52309,6 +50566,24 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -52327,6 +50602,24 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -52345,6 +50638,24 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -52363,6 +50674,24 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -52381,6 +50710,24 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^ @@ -52399,106 +50746,68 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:56, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:67: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp: In member function 'void pssmcreate_cdd::TestConvertSeqalignToCdMsa::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:511:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 511 | auto_ptr q(CTestObjMgr::Instance().CreateSSeqLoc(*qid)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:514:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 514 | auto_ptr in - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp: In member function 'void pssmcreate_cdd::TestFullPssmEngineRunWithDiagnosticsRequest::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:773:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 773 | auto_ptr in - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:781:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 781 | auto_ptr q(CTestObjMgr::Instance().CreateSSeqLoc(*qid)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp: In member function 'void pssmcreate_cdd::TestInternalGapsInSubject::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:914:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 914 | auto_ptr q(CTestObjMgr::Instance().CreateSSeqLoc(*query_id)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:933:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 933 | auto_ptr< CNcbiMatrix > pssm_scores( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp: In member function 'void pssmcreate_cdd::TestNoDomainHits::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:995:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 995 | auto_ptr q(CTestObjMgr::Instance().CreateSSeqLoc(*query_id)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:1014:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1014 | auto_ptr< CNcbiMatrix > pssm_scores( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp: In static member function 'static ncbi::CRef CPssmCddInputTest::CreatePssmInput(EType)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:1147:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1147 | auto_ptr q(CTestObjMgr::Instance().CreateSSeqLoc(*query_id)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=psiblast_iteration_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/psiblast_iteration_unit_test.cpp -o psiblast_iteration_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie psiblast_iteration_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o psiblast_iteration_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast_iteration_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f psiblast_iteration_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/psiblast_iteration_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=rmblast_blasthits_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=rmblast_blasthits_unit_test -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:56, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:79: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rmblast_blasthits_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml2_format.cpp:46: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -52607,180 +50916,30 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api/blast_setup.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api/blast_objmgr_priv.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssm_test_util.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssm_test_util.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:84: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp: In member function 'void pssmcreate::testFullPssmEngineRunWithDiagnosticsRequest::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:574:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 574 | auto_ptr in - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:581:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 581 | auto_ptr q(CTestObjMgr::Instance().CreateSSeqLoc(qid)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp: In member function 'void pssmcreate::testSeqAlignToPsiBlastMultipleSequenceAlignment::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:652:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 652 | auto_ptr q(CTestObjMgr::Instance().CreateSSeqLoc(qid)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:653:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 653 | auto_ptr s(CTestObjMgr::Instance().CreateSSeqLoc(sid)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:668:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 668 | auto_ptr pssm_input( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp: In member function 'void pssmcreate::testPurgeSelfHit::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:763:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 763 | auto_ptr pssm_input - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp: In member function 'void pssmcreate::testPurgeDuplicateHit::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:775:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 775 | auto_ptr pssm_input - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp: In member function 'void pssmcreate::testPurgeNearIdenticalHits::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:788:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 788 | auto_ptr pssm_input - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp: In member function 'void pssmcreate::testQueryAlignedWithInternalGaps::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:802:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 802 | auto_ptr pssm_input - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:810:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 810 | auto_ptr< CNcbiMatrix > pssm - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp: In member function 'void pssmcreate::testMultiSeqAlignmentHasRegionsUnalignedToQuery::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:868:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 868 | auto_ptr pssm_input - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=ntlookup_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp -o ntlookup_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie ntlookup_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o ntlookup_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f ntlookup_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f ntlookup_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/ntlookup_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp: In member function 'void pssmcreate::testQueryIsOnlyAlignedSequenceInMsa::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:1067:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1067 | auto_ptr pssm_input - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=rmblast_traceback_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp: In member function 'void pssmcreate::testRejectFlankingGaps::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:1197:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1197 | auto_ptr bad_pssm_data(new CPssmInputFlankingGaps()); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp: In member function 'void pssmcreate::testRejectGapInQuery::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:1203:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1203 | auto_ptr bad_pssm_data(new CPssmInputGapsInQuery()); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp: In member function 'void pssmcreate::testRejectQueryLength0::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:1209:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1209 | auto_ptr bad_pssm_data(new CPssmInputQueryLength0()); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp: In member function 'void pssmcreate::testRejectNullsReturnedByPssmInput::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:1219:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1219 | auto_ptr bad_pssm_data(new CNullPssmInput()); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp: In member function 'void pssmcreate::testRejectUnsupportedMatrix::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:1224:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1224 | auto_ptr bad_pssm_data(new - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=rmblast_traceback_unit_test -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=hspfilter_besthit_unit_test -w -j21 --jobserver-auth=7,8 all +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rmblast_traceback_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml_format.cpp:45: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -52889,121 +51048,32 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/pssm_engine.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp:43: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=blastfilter_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp -o blastfilter_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blastfilter_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o blastfilter_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastfilter_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f blastfilter_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastfilter_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=rps_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:56, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp:52: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=rps_unit_test -w -j11 --jobserver-auth=7,8 all -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp: In member function 'void PssmEngineFreqRatios::AllZerosFreqRatios::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp:87:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 87 | auto_ptr pssm_input; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp:91:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 91 | auto_ptr< CNcbiMatrix > pssm - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_async_format.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blast_async_format.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -53112,270 +51182,34 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rmblast_traceback_unit_test.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/simple/simple_om.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:51: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api/blast_setup.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rmblast_blasthits_unit_test.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:53: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp: In static member function 'static void CQueryDataTestFixture::s_ObjMgr_QueryFactory_LocalDataFromTSeqLocVector(const std::vector&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:520:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 520 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(qid)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rmblast_traceback_unit_test.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp: In member function 'void QueryData::ObjMgr_QueryFactory_RemoteData_SingleBioseqFromTSeqLocVector::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:634:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 634 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(qid)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp:47: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp: In member function 'void QueryInfo::ProteinGetQueryInfo::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:57:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 57 | auto_ptr qsl(CTestObjMgr::Instance().CreateSSeqLoc(id)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp: In member function 'void QueryInfo::EmptyBlastxGetQueryInfo::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:80:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 80 | auto_ptr qsl( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp: In member function 'void QueryInfo::BlastnGetQueryInfo::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:104:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 104 | auto_ptr qsl1(CTestObjMgr::Instance().CreateSSeqLoc(id1)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:105:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 105 | auto_ptr qsl2(CTestObjMgr::Instance().CreateSSeqLoc(id2)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=ntscan_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp -o ntscan_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie ntscan_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o ntscan_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f ntscan_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f ntscan_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/ntscan_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp: In member function 'void QueryInfo::BlastnGetQueryIndex::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:128:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 128 | auto_ptr qsl1(CTestObjMgr::Instance().CreateSSeqLoc(id1)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:129:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 129 | auto_ptr qsl2(CTestObjMgr::Instance().CreateSSeqLoc(id2)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp: In member function 'void QueryInfo::BlastnSearchContextInfo::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:152:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 152 | auto_ptr qsl1(CTestObjMgr::Instance().CreateSSeqLoc(id1)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 153 | auto_ptr qsl2(CTestObjMgr::Instance().CreateSSeqLoc(id2)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=scoreblk_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp: In member function 'void QueryInfo::BlastnSearchContextInfoSingleStrand::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:188:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 188 | auto_ptr qsl1(CTestObjMgr::Instance().CreateSSeqLoc(id1, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:190:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 190 | auto_ptr qsl2(CTestObjMgr::Instance().CreateSSeqLoc(id2)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=scoreblk_unit_test -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=gapinfo_unit_test -w -j21 --jobserver-auth=7,8 all In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -53484,92 +51318,41 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rmblast_traceback_unit_test.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp:48: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp: In function 'std::string x_Stringify(TOBJ&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rmblast_traceback_unit_test.cpp: In member function 'void traceback::testRMBlastTraceBack::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rmblast_traceback_unit_test.cpp:184:6: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 184 | auto_ptr qsl( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rmblast_traceback_unit_test.cpp:187:6: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 187 | auto_ptr ssl( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp: In member function 'void remote_blast::GetSearchStrategy_FullQuery::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp:1027:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1027 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(*id)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp: In member function 'void remote_blast::GetSearchStrategy_QueryWithRange::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp:1088:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1088 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(*id, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=psibl2seq_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/psibl2seq_unit_test.cpp -o psibl2seq_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie psibl2seq_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o psibl2seq_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f psibl2seq_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f psibl2seq_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/psibl2seq_unit_test +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=search_strategy_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=hspstream_unit_test -w -j21 --jobserver-auth=7,8 all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=msa2pssm_unit_test -w -j21 --jobserver-auth=7,8 all +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=hspfilter_culling_unit_test -w -j21 --jobserver-auth=7,8 all make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=search_strategy_unit_test -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=linkhsp_unit_test -w -j21 --jobserver-auth=7,8 all In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/hspfilter_besthit_unit_test.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -53678,101 +51461,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_blast.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=pssmenginefreqratios_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp -o pssmenginefreqratios_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie pssmenginefreqratios_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o pssmenginefreqratios_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f pssmenginefreqratios_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f pssmenginefreqratios_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/pssmenginefreqratios_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=seqinfosrc_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=seqinfosrc_unit_test -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../core -DNCBI_APP_BUILT_AS=rmblast_blasthits_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rmblast_blasthits_unit_test.cpp -o rmblast_blasthits_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie rmblast_blasthits_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o rmblast_blasthits_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f rmblast_blasthits_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f rmblast_blasthits_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/rmblast_blasthits_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:56, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp:51: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=seqsrc_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=seqsrc_unit_test -w -j11 --jobserver-auth=7,8 all -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp: In member function 'void RpsTestFixture::NuclSearch(ncbi::objects::ENa_strand)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp:196:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 196 | auto_ptr query( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp: In member function 'void rps::WholeSequenceMatch::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp:217:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 217 | auto_ptr query( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/gapinfo_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -53881,16 +51573,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp: In member function 'void rps::TestCBSFreqsNotFound::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp:317:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 317 | auto_ptr query(CTestObjMgr::Instance().CreateSSeqLoc(id)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/gencode_singleton_unit_test.cpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -54001,7 +51686,7 @@ | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/mockseqsrc1_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/hspstream_unit_test.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -54112,7 +51797,7 @@ | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/mockseqsrc2_unit_test.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -54221,55 +51906,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=optionshandle_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/optionshandle_unit_test.cpp -o optionshandle_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie optionshandle_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o optionshandle_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f optionshandle_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f optionshandle_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/optionshandle_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=setupfactory_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=setupfactory_unit_test -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/hspfilter_culling_unit_test.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -54378,76 +52017,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp: In member function 'void scoreblk::GetScoreBlockNucl::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp:67:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 67 | auto_ptr qsl(CTestObjMgr::Instance().CreateSSeqLoc(id, eNa_strand_both)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp: In member function 'void scoreblk::GetScoreBlockProtein::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp:112:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 112 | auto_ptr qsl(CTestObjMgr::Instance().CreateSSeqLoc(id)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=rmblast_traceback_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rmblast_traceback_unit_test.cpp -o rmblast_traceback_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie rmblast_traceback_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o rmblast_traceback_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f rmblast_traceback_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f rmblast_traceback_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/rmblast_traceback_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp: In member function 'void scoreblk::GetScoreBlockPHI::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp:163:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 163 | auto_ptr qsl(CTestObjMgr::Instance().CreateSSeqLoc(id)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp: In member function 'void scoreblk::GetScoreBlockForFullyMaskedProtein::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp:240:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 240 | auto_ptr qsl(CTestObjMgr::Instance().CreateSSeqLoc(id, range)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=split_query_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=split_query_unit_test -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -54556,16 +52128,238 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml2_format.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:45: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_async_format.hpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:45: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/gencode_singleton_unit_test.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:37: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastfmtutil.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:36: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml_format.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:45: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/search_strategy.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/build_archive.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/build_archive.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbitime.hpp:65, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_system.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/build_archive.cpp:35: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/sam_formatter.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/sam.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/sam.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/sam_formatter.hpp:37: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, @@ -54574,6 +52368,57 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/build_archive.cpp:43: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/search_strategy.hpp:178:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 178 | auto_ptr m_Data; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/search_strategy.hpp:181:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 181 | auto_ptr m_OptionsBuilder; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastfmtutil.cpp: In static member function 'static void ncbi::CBlastFormatUtil::PrintAsciiPssm(const ncbi::objects::CPssmWithParameters&, ncbi::CConstRef, ncbi::CNcbiOstream&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastfmtutil.cpp:205:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 205 | auto_ptr< TNcbiMatrixInt > pssm + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastfmtutil.cpp:207:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 207 | auto_ptr< TNcbiMatrixDouble > weighted_res_freqs + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/data4xml2format.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/data4xml2format.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/Seq_annot_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/Seq_annot.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/data4xml2format.cpp:34: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ @@ -54589,8 +52434,8 @@ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqsrc_mock.cpp:39: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/data4xmlformat.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/data4xmlformat.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -54598,9 +52443,10 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/util/random_gen.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqsrc_mock.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqsrc_mock.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/Seq_annot_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/Seq_annot.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/data4xmlformat.cpp:35: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -54616,21 +52462,110 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbitime.hpp:65, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_system.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbifile.hpp:53, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/util/util_misc.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:34: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml2_format.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/seqinfosrc_seqvec.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:40: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:39: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/igblast/igblast.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/igblast/igblast.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/sam.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -54646,40 +52581,107 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=queryinfo_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp -o queryinfo_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie queryinfo_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o queryinfo_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f queryinfo_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f queryinfo_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/queryinfo_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=stat_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqsrc_mock.cpp: In member function 'void CRandomlyFailMockBlastSeqSrc::x_PopulateBLAST_SequenceBlk(BlastSeqSrcGetSeqArg*)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqsrc_mock.cpp:149:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 149 | auto_ptr sl +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_async_format.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=stat_unit_test -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/mockseqsrc1_unit_test.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:40: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:39: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/simple/simple_om.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/unit_test/proteinkmer_unit_test.cpp:50: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbitime.hpp:65, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_system.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/unit_test/proteinkmer_unit_test.cpp:38: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, @@ -54687,158 +52689,133 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/data4xml2format.hpp:44: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 528 | mutable auto_ptr m_AnnotNames; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/simple/simple_om.hpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/search_strategy.hpp:178:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 178 | auto_ptr m_Data; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/search_strategy.hpp:181:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 181 | auto_ptr m_OptionsBuilder; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/stat_unit_test.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp:43: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:41: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/data4xmlformat.hpp:44: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/mockseqsrc2_unit_test.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -54846,8 +52823,7 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -54863,45 +52839,44 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp: In member function 'void seqinfosrc::testSeqVecSeqInfoSrc::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp:70:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 70 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(seqid)); - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp: In member function 'void seqinfosrc::testSeqVecIndexOutOfRange::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp:91:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 91 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(seqid)); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp: In member function 'void search_strategy::ExportStrategy_FullQuery::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp:285:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 285 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(*id)); +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp: In member function 'void search_strategy::ExportStrategy_QueryWithRange::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp:347:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 347 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(*id, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp: In member function 'void search_strategy::ExportStrategy_DBSoftMask::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp:553:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 553 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(*id)); - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp:37: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api/blast_setup.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blasthits_unit_test.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -54926,10 +52901,66 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml_format.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/bl2seq.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -54954,90 +52985,286 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../core -DNCBI_APP_BUILT_AS=pssmcreate_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp -o pssmcreate_unit_test.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../core -DNCBI_APP_BUILT_AS=pssmcreate_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssm_test_util.cpp -o pssm_test_util.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../core -DNCBI_APP_BUILT_AS=pssmcreate_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp -o pssmcreate_cdd_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie pssmcreate_unit_test.o pssm_test_util.o pssmcreate_cdd_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o pssmcreate_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/data4xml2format.hpp: In member function 'virtual std::string ncbi::CCmdLineBlastXML2ReportData::GetFilterString() const': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/data4xml2format.hpp:140:39: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] + 140 | m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ + | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/data4xml2format.hpp:42: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here + 178 | NCBI_DEPRECATED char* GetFilterString() const; + | ^~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:48, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastxml2_format.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml2_format.cpp:44: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -ts/common/impl/if_diff.sh /bin/ln -f pssmcreate_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f pssmcreate_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/pssmcreate_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=subj_ranges_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/igblast/igblast.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=gapinfo_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/gapinfo_unit_test.cpp -o gapinfo_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie gapinfo_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxconnect -lxncbi -llmdb -lpthread -lm -lpthread -o gapinfo_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f gapinfo_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f gapinfo_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/gapinfo_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=subj_ranges_unit_test -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp: In function 'ncbi::blast::TSeqLocVector s_getSequences()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp:88:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 88 | auto_ptr sl( - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/data4xmlformat.hpp: In member function 'virtual std::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/data4xmlformat.hpp:155:38: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] + 155 | m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/data4xmlformat.hpp:42: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here + 178 | NCBI_DEPRECATED char* GetFilterString() const; + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blasthits_unit_test.cpp: In member function 'void blasthits::BlastTargetSequence::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blasthits_unit_test.cpp:116:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 116 | auto_ptr subj(CTestObjMgr::Instance().CreateSSeqLoc(sid)); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp: In member function 'void setup_factory::CreateScoreBlockBadReward::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp:72:6: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 72 | auto_ptr opts_memento (opts.CreateSnapshot()); - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp: In member function 'void setup_factory::CreateScoreBlockMaskedSequence::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp:88:6: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 88 | auto_ptr ssloc( - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp:101:6: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 101 | auto_ptr opts_memento (opts.CreateSnapshot()); - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp: In member function 'void setup_factory::CreateScoreBlockOK::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp:122:6: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 122 | auto_ptr ssloc( - | ^~~~~~~~ +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp:135:6: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 135 | auto_ptr opts_memento (opts.CreateSnapshot()); - | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=ntlookup_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/igblast/igblast.cpp:42: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=ntlookup_unit_test -w -j21 --jobserver-auth=7,8 all +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/hspstream_unit_test.cpp:42: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=hspfilter_culling_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/hspfilter_culling_unit_test.cpp -o hspfilter_culling_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie hspfilter_culling_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o hspfilter_culling_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f hspfilter_culling_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f hspfilter_culling_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/hspfilter_culling_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blastdiag_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastdiag_unit_test.cpp -o blastdiag_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blastdiag_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o blastdiag_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdiag_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f blastdiag_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastdiag_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=hspfilter_besthit_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/hspfilter_besthit_unit_test.cpp -o hspfilter_besthit_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie hspfilter_besthit_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o hspfilter_besthit_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f hspfilter_besthit_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f hspfilter_besthit_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/hspfilter_besthit_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::RemoteOptionsTest::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:73:47: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] + 73 | BOOST_CHECK_NO_THROW(opts.SetFilterString("m L", false)); /* NCBI_FAKE_WARNING */ + | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:180:9: note: in definition of macro 'BOOST_CHECK_NO_THROW_IMPL_EX' + 180 | S; \ + | ^ +/usr/include/boost/test/tools/old/interface.hpp:147:45: note: in expansion of macro 'BOOST_CHECK_NO_THROW_IMPL' + 147 | #define BOOST_CHECK_NO_THROW( S ) BOOST_CHECK_NO_THROW_IMPL( S, CHECK ) + | ^~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/bl2seq.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here + 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); + | ^~~~~~~~~~~~~~~ +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=ntscan_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=ntscan_unit_test -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=optionshandle_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=optionshandle_unit_test -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/subj_ranges_unit_test.cpp:39: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -55146,78 +53373,21 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=querydata_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp -o querydata_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie querydata_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o querydata_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f querydata_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f querydata_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/querydata_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=traceback_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=phiblast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=traceback_unit_test -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=stat_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/stat_unit_test.cpp -o stat_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie stat_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o stat_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f stat_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f stat_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/stat_unit_test +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=rps_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp -o rps_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie rps_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o rps_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f rps_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f rps_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/rps_unit_test +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=tracebacksearch_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=uniform_search_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=phiblast_unit_test -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/optionshandle_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -55290,7 +53460,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -55327,22 +53496,48 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=tracebacksearch_unit_test -w -j11 --jobserver-auth=7,8 all -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=uniform_search_unit_test -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::testCalcLinkHSPCutoffs::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:334:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 334 | auto_ptr qsl( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:337:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 337 | auto_ptr ssl( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::testCalcLinkHSPCutoffsSmallDB::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:503:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 503 | auto_ptr qsl( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:506:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 506 | auto_ptr ssl( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::testCalcLinkHSPResetGapProb::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:591:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 591 | auto_ptr qsl( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:594:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 594 | auto_ptr ssl( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/phiblast_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -55451,9 +53646,35 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::testHitSavingParamNewSomeInvalidKbp::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:855:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 855 | auto_ptr qsl1( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:858:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 858 | auto_ptr qsl2( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:861:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 861 | auto_ptr qsl3( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::testHitSavingParamNewGappedTblastnLargeSubjectSequence::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:941:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 941 | auto_ptr qsl1( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -55562,35 +53783,345 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::testHitSavingParamNewGappedTblastnMidsizeSubjectSequence::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1012:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1012 | auto_ptr qsl1( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::testHitSavingParamUpdateMultipleCalls::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1080:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1080 | auto_ptr qsl1( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::testHitSavingParamNewGappedTblastnSmallSubjectSequence::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1168:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1168 | auto_ptr qsl1( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::testInitialWordParamNewSomeInvalidKbp::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1237:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1237 | auto_ptr qsl1( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1240:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1240 | auto_ptr qsl2( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1243:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1243 | auto_ptr qsl3( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::testRemoteFilterString::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1329:28: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] + 1329 | opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ + | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here + 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1333:28: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] + 1333 | opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ + | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here + 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1338:28: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] + 1338 | opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ + | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here + 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1340:28: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] + 1340 | opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ + | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here + 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1344:28: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] + 1344 | opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ + | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here + 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1346:28: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] + 1346 | opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ + | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here + 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1350:28: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] + 1350 | opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ + | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here + 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1352:28: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] + 1352 | opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ + | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here + 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1356:28: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] + 1356 | opts.SetFilterString("F", true);/* NCBI_FAKE_WARNING */ + | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here + 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1358:28: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] + 1358 | opts.SetFilterString("T", true);/* NCBI_FAKE_WARNING */ + | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here + 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); + | ^~~~~~~~~~~~~~~ +In file included from /usr/include/boost/test/test_tools.hpp:45, + from /usr/include/boost/test/unit_test.hpp:18, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:68: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp: In member function 'void blastoptions::testOptionsDeepCopy::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp:1397:56: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] + 1397 | BOOST_CHECK_EQUAL(string(optsClone->GetFilterString()), string("L;m;")); /* NCBI_FAKE_WARNING */ + | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here + 178 | NCBI_DEPRECATED char* GetFilterString() const; + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp: In member function 'void msa2pssm::QueryNotFoundInMsa::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp:55:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 55 | auto_ptr pssm_input; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp: In member function 'void LinkHspTestFixture::setupLinkHspInputTblastn()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:235:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 235 | auto_ptr qsl( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:240:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 240 | auto_ptr qsl( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp: In member function 'void LinkHspTestFixture::setupLinkHspInputBlastn()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:391:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 391 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(seqid, range)); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp: In member function 'AllCutoffScores* LinkHspTestFixture::setupCutoffScores(bool, Int8, Uint4, Uint4, int)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:433:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 433 | auto_ptr qsl(CTestObjMgr::Instance().CreateSSeqLoc(*qid, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp:438:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 438 | auto_ptr qsl(CTestObjMgr::Instance().CreateSSeqLoc(*qid)); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp: In member function 'void AalookupTestFixture::GetSeqBlk(std::string)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp:99:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 99 | auto_ptr ssl(CTestObjMgr::Instance().CreateSSeqLoc(id, eNa_strand_unknown)); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp: In constructor 'AascanTestFixture::AascanTestFixture()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp:105:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 105 | auto_ptr ssl + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp:140:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 140 | auto_ptr subject_ssl + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=seqinfosrc_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp -o seqinfosrc_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie seqinfosrc_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o seqinfosrc_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqinfosrc_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f seqinfosrc_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/seqinfosrc_unit_test +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=gencode_singleton_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/gencode_singleton_unit_test.cpp -o gencode_singleton_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie gencode_singleton_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o gencode_singleton_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f gencode_singleton_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f gencode_singleton_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/gencode_singleton_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:48, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastxml_format.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml_format.cpp:43: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=version_reference_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=prelimsearch_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=version_reference_unit_test -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/simple/simple_om.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp:46: +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=prelimsearch_unit_test -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/version_reference_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -55699,9 +54230,42 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/optionshandle_unit_test.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/phiblast_unit_test.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, @@ -55712,26 +54276,170 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=scoreblk_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp -o scoreblk_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie scoreblk_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o scoreblk_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f scoreblk_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f scoreblk_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/scoreblk_unit_test +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=msa2pssm_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/msa2pssm_unit_test.cpp -o msa2pssm_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie msa2pssm_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o msa2pssm_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f msa2pssm_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f msa2pssm_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/msa2pssm_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=hspstream_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/hspstream_unit_test.cpp -o hspstream_unit_test.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=hspstream_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/hspstream_test_util.cpp -o hspstream_test_util.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie hspstream_unit_test.o hspstream_test_util.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o hspstream_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f hspstream_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f hspstream_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/hspstream_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:42: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp: In member function 'void TestFixture::SetUpQuery(Uint4, ncbi::objects::ENa_strand)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp:127:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 127 | auto_ptr ssl(CTestObjMgr::Instance().CreateSSeqLoc(id,strand)); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp: In member function 'void TestFixture::SetUpSubject(Uint4)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp:197:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 197 | auto_ptr + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=psibl2seq_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=psibl2seq_unit_test -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp: In member function 'void NtlookupTestFixture::SetUpQuery(Uint4)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp:99:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 99 | auto_ptr ssl(CTestObjMgr::Instance().CreateSSeqLoc( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd app/blastdb/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=convert2blastmask LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb TMPL=convert2blastmask -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=psiblast_iteration_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=psiblast_iteration_unit_test -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/convert2blastmask.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/psibl2seq_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -55840,45 +54548,23 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=setupfactory_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp -o setupfactory_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie setupfactory_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o setupfactory_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f setupfactory_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f setupfactory_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/setupfactory_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd app/segmasker/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=segmasker LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/segmasker' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/segmasker' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/segmasker' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/segmasker' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/segmasker' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/segmasker TMPL=segmasker -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/traceback_stage.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api/dust_filter.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:45: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:159:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 159 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq ); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:168:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 168 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq, + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/segmasker/segmasker.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/psiblast_iteration_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -55987,66 +54673,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=seqsrc_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp -o seqsrc_unit_test.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=seqsrc_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqsrc_mock.cpp -o seqsrc_mock.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=seqsrc_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/mockseqsrc1_unit_test.cpp -o mockseqsrc1_unit_test.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=seqsrc_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/mockseqsrc2_unit_test.cpp -o mockseqsrc2_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie seqsrc_unit_test.o seqsrc_mock.o mockseqsrc1_unit_test.o mockseqsrc2_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -logging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o seqsrc_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqsrc_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f seqsrc_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/seqsrc_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd objtools/format/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xformat UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/format' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/format' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/format' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/format' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/format' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format TMPL=xformat -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -56059,14 +54691,7 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/format' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/accession_item.cpp -o accession_item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/basecount_item.cpp -o basecount_item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/comment_item.cpp -o comment_item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/contig_item.cpp -o contig_item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/date_item.cpp -o date_item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/dbsource_item.cpp -o dbsource_item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wf/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here @@ -56078,132 +54703,55 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:56, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp:54: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::SetupSubjectsProt::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:485:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 485 | auto_ptr sseqloc(CTestObjMgr::Instance().CreateSSeqLoc(id)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp: In member function 'ncbi::blast::CSearchResultSet CTracebackSearchTestFixture::x_Traceback(ncbi::CSeqDBGiList*)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp:269:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 269 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(query)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp: In member function 'void tracebacksearch::SimpleTraceback::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp:331:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 331 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(query)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp: In member function 'void tracebacksearch::TracebackWithPssm_AndWarning::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp:375:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 375 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(query)); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:490:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 490 | auto_ptr | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::SetupSubjectsProtRange::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:516:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 516 | auto_ptr sseqloc( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp: In member function 'void traceback::testBLASTNTraceBack::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:211:6: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 211 | auto_ptr qsl( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:214:6: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 214 | auto_ptr ssl( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp: In member function 'void traceback::testBLASTNTraceBackLargeXDrop::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:341:6: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 341 | auto_ptr qsl( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:344:6: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 344 | auto_ptr ssl( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp: In member function 'void traceback::testBLASTPTraceBack::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:479:6: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr qsl( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:481:6: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 481 | auto_ptr ssl( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp: In member function 'void traceback::testTBLASTNTraceBack::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:603:6: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 603 | auto_ptr qsl( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:605:6: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 605 | auto_ptr ssl( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp: In member function 'void traceback::testFilterBlastResults_QueryCov::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:849:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 849 | auto_ptr qsl( +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:522:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 522 | auto_ptr | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:851:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 851 | auto_ptr ssl( +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::SetupSubjectsNuclPlusStrandFiltered::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:549:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 549 | auto_ptr sl(m_Om->CreateSSeqLoc(id, kRange, kStrand)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp: In member function 'void traceback::testFilterBlastResults_MaxHsps::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:952:6: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 952 | auto_ptr qsl( - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::SetupSubjectsNuclMinusStrandFiltered::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:576:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 576 | auto_ptr sl(m_Om->CreateSSeqLoc(id, kRange, kStrand)); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:955:6: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 955 | auto_ptr ssl( - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_search.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::SetupSubjectsNuclBothStrandFiltered::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:603:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 603 | auto_ptr sl(m_Om->CreateSSeqLoc(id, kRange, kStrand)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; @@ -56211,561 +54759,214 @@ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:56, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp:45: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp: In function 'ncbi::blast::CSearchResultSet RunMultipleProteinSearch(ncbi::blast::ISearchFactory&, const std::string&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp:87:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 87 | auto_ptr sl0(CTestObjMgr::Instance().CreateSSeqLoc(query_id0)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp:90:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 90 | auto_ptr sl1(CTestObjMgr::Instance().CreateSSeqLoc(query_id1)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/segmasker/segmasker.cpp:44: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] - 94 | objects::CFastaReader::fAllSeqIds | - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here - 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] - 94 | objects::CFastaReader::fAllSeqIds | - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here - 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) - | ^~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=subj_ranges_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/subj_ranges_unit_test.cpp -o subj_ranges_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie subj_ranges_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o subj_ranges_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f subj_ranges_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f subj_ranges_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/subj_ranges_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/segmasker/segmasker.cpp:52: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp:41: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/segmask/segmask.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/segmasker/segmasker.cpp:55: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::SetupSubjectsNuclPlusStrand::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:632:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 632 | auto_ptr sl(m_Om->CreateSSeqLoc(id, range, kStrand)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:635:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 635 | auto_ptr | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/segmasker/segmasker.cpp: In member function 'virtual void SegMaskerApplication::Init()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/segmasker/segmasker.cpp:104:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 104 | auto_ptr arg_desc(new CArgDescriptions); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp: In member function 'void prelimsearch::SplitNucleotideQuery::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp:144:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 144 | auto_ptr q_ssl(CTestObjMgr::Instance().CreateSSeqLoc(q_id, kRange, kStrand)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/segmasker/segmasker.cpp: In member function 'virtual int SegMaskerApplication::Run()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/segmasker/segmasker.cpp:225:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 225 | auto_ptr reader(x_GetReader()); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/segmasker/segmasker.cpp:226:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 226 | auto_ptr writer(x_GetWriter()); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/segmasker/segmasker.cpp:239:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 239 | auto_ptr masks(masker(sequence_data)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/convert2blastmask.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/basecount_item.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp: In member function 'void prelimsearch::BuildCStd_seg_blastn::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp:173:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 173 | auto_ptr q_ssl(CTestObjMgr::Instance().CreateSSeqLoc(q_id, kRange, kStrand)); | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/basecount_item.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::SetupSubjectsNuclMinusStrand::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:659:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 659 | auto_ptr sl(m_Om->CreateSSeqLoc(id, range, kStrand)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/dbsource_item.cpp:51: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:661:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 661 | auto_ptr | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/dbsource_item.cpp:32: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp: In member function 'void prelimsearch::BuildCStd_seg_tblastx::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp:210:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 210 | auto_ptr q_ssl(CTestObjMgr::Instance().CreateSSeqLoc(q_id, kRange, kStrand)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/convert2blastmask.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::SetupSubjectsNuclBothStrand::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:685:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 685 | auto_ptr sl(m_Om->CreateSSeqLoc(id, range, kStrand)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:688:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 688 | auto_ptr | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/feature.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:48, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genome_item.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::GetSequenceNCBI4NA_NoSentinels::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:758:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 758 | auto_ptr sl( | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genome_item.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::GetSequenceNCBI2NA::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:773:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 773 | auto_ptr sl( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::GetGapOnlySequenceNCBI2NA::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:788:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 788 | auto_ptr sl( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=search_strategy_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp -o search_strategy_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie search_strategy_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o search_strategy_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f search_strategy_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f search_strategy_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/search_strategy_unit_test +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=linkhsp_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/linkhsp_unit_test.cpp -o linkhsp_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie linkhsp_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o linkhsp_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f linkhsp_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f linkhsp_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/linkhsp_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/defline_item.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/defline_item.cpp:33: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/dbsource_item.cpp:56: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/feature.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:48, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/contig_item.cpp:45: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/contig_item.cpp:33: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/ctrl_items.cpp:49: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/ctrl_items.cpp:33: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/feature.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:48, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/keywords_item.cpp:53: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/keywords_item.cpp:33: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/basecount_item.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/dbsource_item.cpp:61: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::GetGapInSequenceNCBI2NA::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:811:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 811 | auto_ptr sl( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=aalookup_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aalookup_unit_test.cpp -o aalookup_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie aalookup_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o aalookup_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f aalookup_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f aalookup_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/aalookup_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 449 | auto_ptr m_ConfigFile; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 450 | auto_ptr m_Reg; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::testEffSearchSpaceCalculator_Ungapped::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:952:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 952 | auto_ptr sseqloc(CTestObjMgr::Instance().CreateSSeqLoc(id)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:957:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 957 | auto_ptr | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/defline_item.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::testEffSearchSpaceCalculatorNoSideEffects::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:978:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 978 | auto_ptr sseqloc(CTestObjMgr::Instance().CreateSSeqLoc(id)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:983:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 983 | auto_ptr | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/accession_item.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::testMitochondrialGeneticCode::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:1046:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1046 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(id, | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/accession_item.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::testMainSetup::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:1071:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1071 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(id, | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../core -DNCBI_APP_BUILT_AS=blasthits_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blasthits_unit_test.cpp -o blasthits_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blasthits_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o blasthits_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blasthits_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f blasthits_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blasthits_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=pssmcreate_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=pssmenginefreqratios_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=pssmcreate_unit_test -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=pssmenginefreqratios_unit_test -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_async_format.hpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:45: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/comment_item.cpp:58: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/comment_item.cpp:36: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/feature.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:48, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/date_item.cpp:43: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/psibl2seq.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/psibl2seq_unit_test.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -56773,19 +54974,8 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/date_item.cpp:33: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -56801,573 +54991,874 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:50: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::testSetupWithZeroLengthSequence::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:1237:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1237 | auto_ptr ssl1(CTestObjMgr::Instance().CreateSSeqLoc(id1, kStrand)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:1238:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1238 | auto_ptr ssl2(CTestObjMgr::Instance().CreateEmptySSeqLoc(id2)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:1239:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1239 | auto_ptr ssl3(CTestObjMgr::Instance().CreateSSeqLoc(id3, kStrand)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssm_test_util.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+ib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::GetSubjectTranslations::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:1281:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1281 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(id, | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:49: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1554 | static auto_ptr m_GeneInfoReader; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::GetMixedFrameQuery::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:1323:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1323 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(id, | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp: In member function 'void BlastSetup::GetMixedFrameQueryOnOneStrand::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp:1362:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1362 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(id, | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=querydata_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=version_reference_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/version_reference_unit_test.cpp -o version_reference_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie version_reference_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o version_reference_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f version_reference_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f version_reference_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/version_reference_unit_test +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/convert2blastmask.cpp: In member function 'virtual void CConvert2BlastMaskApplication::Init()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/convert2blastmask.cpp:148:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 148 | auto_ptr arg_desc(new CArgDescriptions); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/convert2blastmask.cpp: In member function 'virtual int CConvert2BlastMaskApplication::Run()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/convert2blastmask.cpp:223:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 223 | auto_ptr reader(x_GetReader()); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/convert2blastmask.cpp:224:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 224 | auto_ptr writer(x_GetWriter()); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/ctrl_items.cpp:53: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/keywords_item.cpp: In member function 'virtual void ncbi::objects::CKeywordsItem::x_GatherInfo(ncbi::objects::CBioseqContext&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/keywords_item.cpp:344:18: warning: catching polymorphic type 'class ncbi::CException' by value [-Wcatch-value=] - 344 | } catch (CException) { - | ^~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/accession_item.cpp:46: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/ctrl_items.cpp:58: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -ormat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/defline_item.cpp -o defline_item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/feature_item.cpp -o feature_item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genome_item.cpp -o genome_item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/ctrl_items.cpp -o ctrl_items.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/keywords_item.cpp -o keywords_item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/locus_item.cpp -o locus_item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/comment_item.cpp:63: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/feature_item.cpp:90: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/feature_item.cpp:44: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/comment_item.cpp: In function 'void ncbi::objects::s_GetAssemblyInfo(const CBioseqContext&, std::string&, const CUser_object&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/comment_item.cpp:374:16: warning: unused variable 'is_html' [-Wunused-variable] - 374 | const bool is_html = ctx.Config().DoHTML(); - | ^~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/feature_item.cpp:91: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/feature_item.cpp:94: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/items/gene_finder.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/feature_item.cpp:108: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/items/gene_finder.hpp:113:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 113 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/segmasker' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=segmasker /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/segmasker/segmasker.cpp -o segmasker.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie segmasker.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxobjsimple -lxalgosegmask -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o segmasker -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f segmasker /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f segmasker /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/segmasker -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/segmasker' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/segmasker' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/feature_item.cpp: In function 'const std::string& ncbi::objects::s_AaName(int)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/feature_item.cpp:2115:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'unsigned int'} [-Wsign-compare] - 2115 | if ( idx > 0 && idx < ArraySize(s_TrnaList) ) { - | ~~~~^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/primary_item.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/primary_item.cpp:33: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=tracebacksearch_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp -o tracebacksearch_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie tracebacksearch_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o tracebacksearch_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f tracebacksearch_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f tracebacksearch_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/tracebacksearch_unit_test +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=querydata_unit_test -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=phiblast_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/phiblast_unit_test.cpp -o phiblast_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie phiblast_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o phiblast_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f phiblast_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f phiblast_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/phiblast_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=queryinfo_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=remote_blast_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp -o remote_blast_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie remote_blast_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o remote_blast_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f remote_blast_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f remote_blast_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/remote_blast_unit_test +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/primary_item.cpp:43: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=queryinfo_unit_test -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:53: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/primary_item.cpp:48: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/primary_item.cpp: In member function 'void ncbi::objects::CPrimaryItem::x_GetStrForPrimary(ncbi::objects::CBioseqContext&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/primary_item.cpp:220:63: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'ncbi::TSignedSeqPos' {aka 'int'} [-Wsign-compare] - 220 | if ( ctx.IsRefSeq() && last_stop > -1 && (this_start > (last_stop + 1)) ) { - | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/primary_item.cpp:221:28: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'int' [-Wsign-compare] - 221 | if (this_start < (15 + last_stop) ) { - | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=convert2blastmask /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/convert2blastmask.cpp -o convert2blastmask.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie convert2blastmask.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -llmdb -lpthread -lm -lpthread -o convert2blastmask -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f convert2blastmask /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f convert2blastmask /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/convert2blastmask -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=uniform_search_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp -o uniform_search_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie uniform_search_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o uniform_search_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f uniform_search_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f uniform_search_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/uniform_search_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/locus_item.cpp:55: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/locus_item.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/simple/simple_om.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/psibl2seq_unit_test.cpp:50: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/feature.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:48, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/segment_item.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/segment_item.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/locus_item.cpp:59: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/source_item.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/source_item.cpp:33: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/igblast/igblast.cpp: In member function 'void ncbi::blast::CIgBlast::x_FindDJAln(ncbi::CRef&, ncbi::CRef&, std::string, bool, ncbi::objects::ENa_strand, int, int, bool)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/igblast/igblast.cpp:997:43: warning: comparison of integer expressions of different signedness: 'ncbi::TSeqPos' {aka 'unsigned int'} and 'int' [-Wsign-compare] + 997 | if ((*it)->GetSeqStart(1) > max_allowed_j_deletion) keep = false; + | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 414 | auto_ptr m_SamFormatter; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/sequence_item.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/sequence_item.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerutils.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmerresults.hpp:46, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/blastkmer.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/unit_test/proteinkmer_unit_test.cpp:56: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/mhfile.hpp:175:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 175 | auto_ptr m_MmappedIndex; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/proteinkmer/mhfile.hpp:178:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 178 | auto_ptr m_MmappedData; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 449 | auto_ptr m_ConfigFile; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 450 | auto_ptr m_Reg; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/reference_item.cpp:60: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ @@ -57375,134 +55866,28 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/reference_item.cpp:35: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/locus_item.cpp:65: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -ast+-2.12.0+ds/c++/src/objtools/format/primary_item.cpp -o primary_item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/reference_item.cpp -o reference_item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/segment_item.cpp -o segment_item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/sequence_item.cpp -o sequence_item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/source_item.cpp -o source_item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/version_item.cpp -o version_item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/wgs_item.cpp -o wgs_item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/source_item.cpp:42: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/reference_item.cpp:61: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/source_item.cpp:47: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; - | ^~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/sequence_item.cpp:43: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 449 | auto_ptr m_ConfigFile; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 450 | auto_ptr m_Reg; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/source_item.cpp: In member function 'void ncbi::objects::CSourceItem::x_GatherInfoIdx(ncbi::objects::CBioseqContext&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/source_item.cpp:182:23: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] - 182 | for (int i = 0; i < sizeof (legal_organelles) / sizeof (const char*); i++) { - | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/source_item.cpp: In member function 'void ncbi::objects::CSourceItem::x_SetSource(const ncbi::objects::CBioSource&, const ncbi::CSerialObject&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/source_item.cpp:387:21: warning: comparison of integer expressions of different signedness: 'ncbi::objects::CBioSource_Base::TGenome' {aka 'int'} and 'const unsigned int' [-Wsign-compare] - 387 | if ( genome >= s_organelle_prefix_size ) { - | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/feature.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:48, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/wgs_item.cpp:40: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/pssm_engine.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:58: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -57510,7 +55895,8 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/wgs_item.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -57526,36 +55912,11 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/reference_item.cpp:70: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/feature.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:48, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/version_item.cpp:40: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/pssm_engine.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp:43: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -57563,7 +55924,8 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/version_item.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -57579,58 +55941,38 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49: +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=aascan_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp -o aascan_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie aascan_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o aascan_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f aascan_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f aascan_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/aascan_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:56, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssm_test_util.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=traceback_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp -o traceback_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie traceback_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o traceback_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f traceback_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f traceback_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/traceback_unit_test +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=ntlookup_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntlookup_unit_test.cpp -o ntlookup_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie ntlookup_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o ntlookup_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f ntlookup_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f ntlookup_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/ntlookup_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/feature.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:48, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/tsa_item.cpp:40: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:64: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -57638,7 +55980,8 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/tsa_item.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -57654,51 +55997,47 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=remote_blast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=split_query_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp -o split_query_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie split_query_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o split_query_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f split_query_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f split_query_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/split_query_unit_test +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=remote_blast_unit_test -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49: +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=rmblast_blasthits_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=rmblast_blasthits_unit_test -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:56, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:67: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -NDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/tsa_item.cpp -o tsa_item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/flat_seqloc.cpp -o flat_seqloc.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/qualifiers.cpp -o qualifiers.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/context.cpp -o context.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_items.cpp -o gather_items.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/embl_gather.cpp -o embl_gather.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genbank_gather.cpp In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/qualifiers.cpp:52: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/qualifiers.cpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -57714,126 +56053,333 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/flat_seqloc.cpp:42: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/general/Int_fuzz_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/general/Int_fuzz.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/flat_seqloc.cpp:37: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rmblast_blasthits_unit_test.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp: In member function 'void pssmcreate_cdd::TestConvertSeqalignToCdMsa::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:511:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 511 | auto_ptr q(CTestObjMgr::Instance().CreateSSeqLoc(*qid)); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:514:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 514 | auto_ptr in + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/qualifiers.cpp:56: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:56, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp:52: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp: In member function 'void pssmcreate_cdd::TestFullPssmEngineRunWithDiagnosticsRequest::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:773:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 773 | auto_ptr in + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:781:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 781 | auto_ptr q(CTestObjMgr::Instance().CreateSSeqLoc(*qid)); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/qualifiers.cpp: In member function 'virtual void ncbi::objects::CFlatSeqIdQVal::Format(ncbi::objects::TFlatQuals&, const ncbi::CTempString&, ncbi::objects::CBioseqContext&, ncbi::objects::IFlatQVal::TFlags) const': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/qualifiers.cpp:1108:10: warning: unused variable 'bHtml' [-Wunused-variable] - 1108 | bool bHtml = ctx.Config().DoHTML(); - | ^~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/flat_seqloc.cpp:44: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp: In member function 'void pssmcreate_cdd::TestInternalGapsInSubject::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:914:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 914 | auto_ptr q(CTestObjMgr::Instance().CreateSSeqLoc(*query_id)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:933:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 933 | auto_ptr< CNcbiMatrix > pssm_scores( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/flat_seqloc.cpp:48: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=psiblast_iteration_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/psiblast_iteration_unit_test.cpp -o psiblast_iteration_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie psiblast_iteration_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o psiblast_iteration_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast_iteration_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f psiblast_iteration_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/psiblast_iteration_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp: In member function 'void pssmcreate_cdd::TestNoDomainHits::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:995:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 995 | auto_ptr q(CTestObjMgr::Instance().CreateSSeqLoc(*query_id)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=rmblast_traceback_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:1014:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1014 | auto_ptr< CNcbiMatrix > pssm_scores( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/items/sequence_item.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/embl_gather.cpp:49: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp: In static member function 'static ncbi::CRef CPssmCddInputTest::CreatePssmInput(EType)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp:1147:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1147 | auto_ptr q(CTestObjMgr::Instance().CreateSSeqLoc(*query_id)); | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/embl_gather.cpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=rmblast_traceback_unit_test -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp: In member function 'void PssmEngineFreqRatios::AllZerosFreqRatios::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp:87:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 87 | auto_ptr pssm_input; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp:91:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 91 | auto_ptr< CNcbiMatrix > pssm + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/context.cpp:51: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -57841,7 +56387,8 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/context.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -57857,21 +56404,127 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rmblast_traceback_unit_test.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/feature.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:48, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/item_formatter.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/embl_formatter.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/embl_formatter.cpp:43: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api/blast_setup.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api/blast_objmgr_priv.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssm_test_util.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssm_test_util.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/embl_formatter.cpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -57887,173 +56540,129 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/flat_file_generator.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/flat_file_generator.cpp:33: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:53: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genbank_gather.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genbank_gather.cpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:56, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:79: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/gather_items.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/embl_gather.cpp:52: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/simple/simple_om.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:51: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_items.cpp:63: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp: In member function 'void QueryInfo::ProteinGetQueryInfo::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:57:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 57 | auto_ptr qsl(CTestObjMgr::Instance().CreateSSeqLoc(id)); | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_items.cpp:35: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp: In member function 'void QueryInfo::EmptyBlastxGetQueryInfo::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:80:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 80 | auto_ptr qsl( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp: In member function 'void QueryInfo::BlastnGetQueryInfo::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:104:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 104 | auto_ptr qsl1(CTestObjMgr::Instance().CreateSSeqLoc(id1)); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:105:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 105 | auto_ptr qsl2(CTestObjMgr::Instance().CreateSSeqLoc(id2)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp: In member function 'void QueryInfo::BlastnGetQueryIndex::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:128:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 128 | auto_ptr qsl1(CTestObjMgr::Instance().CreateSSeqLoc(id1)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:129:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 129 | auto_ptr qsl2(CTestObjMgr::Instance().CreateSSeqLoc(id2)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/context.cpp:56: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp: In member function 'void QueryInfo::BlastnSearchContextInfo::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:152:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 152 | auto_ptr qsl1(CTestObjMgr::Instance().CreateSSeqLoc(id1)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/item_formatter.cpp:48: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:153:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 153 | auto_ptr qsl2(CTestObjMgr::Instance().CreateSSeqLoc(id2)); | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/item_formatter.cpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp: In member function 'void QueryInfo::BlastnSearchContextInfoSingleStrand::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:188:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 188 | auto_ptr qsl1(CTestObjMgr::Instance().CreateSSeqLoc(id1, | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp:190:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 190 | auto_ptr qsl2(CTestObjMgr::Instance().CreateSSeqLoc(id2)); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:84: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ @@ -58066,196 +56675,583 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp: In member function 'void pssmcreate::testFullPssmEngineRunWithDiagnosticsRequest::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:574:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 574 | auto_ptr in | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:581:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 581 | auto_ptr q(CTestObjMgr::Instance().CreateSSeqLoc(qid)); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/flat_file_generator.cpp:44: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp: In member function 'void pssmcreate::testSeqAlignToPsiBlastMultipleSequenceAlignment::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:652:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 652 | auto_ptr q(CTestObjMgr::Instance().CreateSSeqLoc(qid)); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/context.cpp:64: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:653:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 653 | auto_ptr s(CTestObjMgr::Instance().CreateSSeqLoc(sid)); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:668:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 668 | auto_ptr pssm_input( + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp: In member function 'void pssmcreate::testPurgeSelfHit::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:763:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 763 | auto_ptr pssm_input | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp: In member function 'void pssmcreate::testPurgeDuplicateHit::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:775:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 775 | auto_ptr pssm_input + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_items.cpp:73: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp: In member function 'void pssmcreate::testPurgeNearIdenticalHits::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:788:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 788 | auto_ptr pssm_input + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp: In member function 'void pssmcreate::testQueryAlignedWithInternalGaps::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:802:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 802 | auto_ptr pssm_input + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:810:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 810 | auto_ptr< CNcbiMatrix > pssm | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp: In member function 'void pssmcreate::testMultiSeqAlignmentHasRegionsUnalignedToQuery::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:868:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 868 | auto_ptr pssm_input + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp: In member function 'void pssmcreate::testQueryIsOnlyAlignedSequenceInMsa::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:1067:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1067 | auto_ptr pssm_input | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp: In member function 'void pssmcreate::testRejectFlankingGaps::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:1197:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1197 | auto_ptr bad_pssm_data(new CPssmInputFlankingGaps()); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/gather_items.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_items.cpp:100: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp: In member function 'void pssmcreate::testRejectGapInQuery::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:1203:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1203 | auto_ptr bad_pssm_data(new CPssmInputGapsInQuery()); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp: In member function 'void pssmcreate::testRejectQueryLength0::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:1209:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1209 | auto_ptr bad_pssm_data(new CPssmInputQueryLength0()); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_items.cpp:101: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/gather_iter.hpp:78:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 78 | auto_ptr m_BioseqIter; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp: In member function 'void pssmcreate::testRejectNullsReturnedByPssmInput::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:1219:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1219 | auto_ptr bad_pssm_data(new CNullPssmInput()); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/flat_file_generator.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/flat_file_generator.cpp:50: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp: In member function 'void pssmcreate::testRejectUnsupportedMatrix::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp:1224:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1224 | auto_ptr bad_pssm_data(new + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/item_formatter.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/item_formatter.cpp:51: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:53: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp: In static member function 'static void CQueryDataTestFixture::s_ObjMgr_QueryFactory_LocalDataFromTSeqLocVector(const std::vector&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:520:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 520 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(qid)); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_items.cpp: In member function 'void ncbi::objects::CFlatGatherer::x_SubtractFromFocus(TSourceFeatSet&) const': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_items.cpp:2144:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2144 | auto_ptr copyOfOriginalSeqLocOfFocus( new CSeq_loc() ); +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=psibl2seq_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/psibl2seq_unit_test.cpp -o psibl2seq_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie psibl2seq_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o psibl2seq_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f psibl2seq_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f psibl2seq_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/psibl2seq_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp: In member function 'void QueryData::ObjMgr_QueryFactory_RemoteData_SingleBioseqFromTSeqLocVector::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp:634:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 634 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(qid)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/item_formatter.cpp:59: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/gbseq_formatter.hpp:105:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 105 | auto_ptr m_Out; +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=rps_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=rps_unit_test -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=prelimsearch_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/prelimsearch_unit_test.cpp -o prelimsearch_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie prelimsearch_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o prelimsearch_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f prelimsearch_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f prelimsearch_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/prelimsearch_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=scoreblk_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=scoreblk_unit_test -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rmblast_traceback_unit_test.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/gather_items.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genbank_gather.cpp:66: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=ntscan_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/ntscan_unit_test.cpp -o ntscan_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie ntscan_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o ntscan_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f ntscan_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f ntscan_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/ntscan_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=search_strategy_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=search_strategy_unit_test -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api/blast_setup.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rmblast_blasthits_unit_test.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ --o genbank_gather.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/flat_file_generator.cpp -o flat_file_generator.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/item_formatter.cpp -o item_formatter.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/embl_formatter.cpp -o embl_formatter.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genbank_formatter.cpp -o genbank_formatter.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/format_item_ostream.cpp -o format_item_ostream.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/item_ostream.cpp -o item_ostream.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEB/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_items.cpp: At global scope: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_items.cpp:971:13: warning: 'bool ncbi::objects::s_NsAreGaps(const CBioseq_Handle&, CBioseqContext&)' defined but not used [-Wunused-function] - 971 | static bool s_NsAreGaps(const CBioseq_Handle& seq, CBioseqContext& ctx) - | ^~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genbank_formatter.cpp:43: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rmblast_traceback_unit_test.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genbank_formatter.cpp:35: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -58271,15 +57267,146 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=pssmenginefreqratios_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmenginefreqratios_unit_test.cpp -o pssmenginefreqratios_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie pssmenginefreqratios_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o pssmenginefreqratios_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f pssmenginefreqratios_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f pssmenginefreqratios_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/pssmenginefreqratios_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=seqinfosrc_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=seqinfosrc_unit_test -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 414 | auto_ptr m_SamFormatter; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blast_async_format.cpp: In member function 'virtual void* CBlastAsyncFormatThread::Main()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blast_async_format.cpp:122:49: warning: comparison of integer expressions of different signedness: 'std::map >::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] + 122 | if (m_ResultsMap.size() != currNum) + | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rmblast_traceback_unit_test.cpp:40: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ @@ -58292,39 +57419,11 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/item_formatter.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/genbank_formatter.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genbank_formatter.cpp:47: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -UG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/ostream_text_ostream.cpp -o ostream_text_ostream.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/origin_item.cpp -o origin_item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/ftable_gather.cpp -o ftable_gather.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/ftable_formatter.cpp -o ftable_formatter.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gbseq_formatter.cpp -o gbseq_formatter.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/flat_file_config.cpp -o flat_file_config.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genbank_formatter.cpp: In member function 'virtual void ncbi::objects::CGenbankFormatter::FormatSequence(const ncbi::objects::CSequenceItem&, ncbi::objects::IFlatTextOStream&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genbank_formatter.cpp:2048:18: warning: catching polymorphic type 'class ncbi::objects::CSeqVectorException' by value [-Wcatch-value=] - 2048 | } catch (CSeqVectorException) { - | ^~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genbank_formatter.cpp:2089:26: warning: catching polymorphic type 'class ncbi::objects::CSeqVectorException' by value [-Wcatch-value=] - 2089 | } catch (CSeqVectorException) { - | ^~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/feature.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:48, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/origin_item.cpp:42: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -58332,7 +57431,8 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/origin_item.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -58348,10 +57448,14 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/items/feature_item.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/ftable_gather.cpp:40: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_blast.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp:41: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -58359,7 +57463,8 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/ftable_gather.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -58375,37 +57480,70 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rmblast_traceback_unit_test.cpp: In member function 'void traceback::testRMBlastTraceBack::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rmblast_traceback_unit_test.cpp:184:6: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 184 | auto_ptr qsl( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rmblast_traceback_unit_test.cpp:187:6: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 187 | auto_ptr ssl( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp:47: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genbank_formatter.cpp: At global scope: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genbank_formatter.cpp:281:15: warning: 'std::string ncbi::objects::s_get_anchor_html(const std::string&, ncbi::TGi)' defined but not used [-Wunused-function] - 281 | static string s_get_anchor_html(const string & sAnchorName, TGi iGi ) - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=queryinfo_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/queryinfo_unit_test.cpp -o queryinfo_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie queryinfo_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o queryinfo_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f queryinfo_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f queryinfo_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/queryinfo_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:56, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp:51: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; - | ^~~~~~~~ +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=seqsrc_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/feature.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:48, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/item_formatter.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/ftable_formatter.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/ftable_formatter.cpp:39: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -58413,10 +57551,14 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/ftable_formatter.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ @@ -58429,80 +57571,537 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/gather_items.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/ftable_gather.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=seqsrc_unit_test -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp: In member function 'void RpsTestFixture::NuclSearch(ncbi::objects::ENa_strand)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp:196:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 196 | auto_ptr query( + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp: In member function 'void rps::WholeSequenceMatch::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp:217:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 217 | auto_ptr query( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp:48: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp: In member function 'void rps::TestCBSFreqsNotFound::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp:317:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 317 | auto_ptr query(CTestObjMgr::Instance().CreateSSeqLoc(id)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp: In function 'std::string x_Stringify(TOBJ&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/mockseqsrc2_unit_test.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/mockseqsrc1_unit_test.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../core -DNCBI_APP_BUILT_AS=rmblast_blasthits_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rmblast_blasthits_unit_test.cpp -o rmblast_blasthits_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie rmblast_blasthits_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o rmblast_blasthits_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f rmblast_blasthits_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f rmblast_blasthits_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/rmblast_blasthits_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=setupfactory_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=setupfactory_unit_test -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp: In member function 'void remote_blast::GetSearchStrategy_FullQuery::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp:1027:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1027 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(*id)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/feature.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:48, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/alignment_item.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp: In member function 'void remote_blast::GetSearchStrategy_QueryWithRange::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp:1088:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1088 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(*id, | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/alignment_item.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/items/feature_item.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/flat_file_config.cpp:45: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/search_strategy.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -58510,8 +58109,8 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/flat_file_config.hpp:34, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/flat_file_config.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -58527,7 +58126,6 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/ftable_formatter.cpp:40: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ @@ -58540,90 +58138,215 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/feature.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:48, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genome_project_item.cpp:43: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp: In member function 'void scoreblk::GetScoreBlockNucl::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp:67:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 67 | auto_ptr qsl(CTestObjMgr::Instance().CreateSSeqLoc(id, eNa_strand_both)); | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genome_project_item.cpp:33: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp: In member function 'void scoreblk::GetScoreBlockProtein::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp:112:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 112 | auto_ptr qsl(CTestObjMgr::Instance().CreateSSeqLoc(id)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp: In member function 'void scoreblk::GetScoreBlockPHI::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp:163:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 163 | auto_ptr qsl(CTestObjMgr::Instance().CreateSSeqLoc(id)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp: In member function 'void scoreblk::GetScoreBlockForFullyMaskedProtein::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp:240:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 240 | auto_ptr qsl(CTestObjMgr::Instance().CreateSSeqLoc(id, range)); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=blastoptions_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastoptions_unit_test.cpp -o blastoptions_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blastoptions_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o blastoptions_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastoptions_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f blastoptions_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastoptions_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/search_strategy.hpp:178:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 178 | auto_ptr m_Data; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/search_strategy.hpp:181:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 181 | auto_ptr m_OptionsBuilder; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp:43: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp: In member function 'void search_strategy::ExportStrategy_FullQuery::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp:285:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 285 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(*id)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genome_project_item.cpp: In member function 'virtual void ncbi::objects::CGenomeProjectItem::x_GatherInfo(ncbi::objects::CBioseqContext&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genome_project_item.cpp:274:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 274 | auto_ptr pStrsDestroyer; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp: In member function 'void search_strategy::ExportStrategy_QueryWithRange::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp:347:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 347 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(*id, + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genome_project_item.cpp:305:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 305 | auto_ptr pIntsDestroyer; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp: In member function 'void search_strategy::ExportStrategy_DBSoftMask::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp:553:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 553 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(*id)); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=split_query_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=split_query_unit_test -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gbseq_formatter.cpp:49: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/seqinfosrc_seqvec.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -58631,7 +58354,8 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gbseq_formatter.cpp:33: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -58647,93 +58371,343 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/aln_explorer.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/cigar_formatter.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/sam_formatter.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:53: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Dense_seg_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Dense_seg.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/alnmgr/alnmap.hpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp: In member function 'void seqinfosrc::testSeqVecSeqInfoSrc::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp:70:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 70 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(seqid)); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp: In member function 'void seqinfosrc::testSeqVecIndexOutOfRange::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp:91:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 91 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(seqid)); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gbseq_formatter.cpp:51: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=querydata_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/querydata_unit_test.cpp -o querydata_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie querydata_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o querydata_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f querydata_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f querydata_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/querydata_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=stat_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=stat_unit_test -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/stat_unit_test.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=rmblast_traceback_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rmblast_traceback_unit_test.cpp -o rmblast_traceback_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie rmblast_traceback_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o rmblast_traceback_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f rmblast_traceback_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f rmblast_traceback_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/rmblast_traceback_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=subj_ranges_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=subj_ranges_unit_test -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqsrc_mock.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/util/random_gen.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqsrc_mock.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqsrc_mock.cpp:35: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -blast+-2.12.0+ds/c++/src/objtools/format/alignment_item.cpp -o alignment_item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gap_item.cpp -o gap_item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/genome_project_item.cpp -o genome_project_item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/sam_formatter.cpp -o sam_formatter.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/cigar_formatter.cpp -o cigar_formatter.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_iter.cpp -o gather_iter.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/html_anchor_item.cpp -o html_anchor_item.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -WerIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/item_formatter.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/gbseq_formatter.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gbseq_formatter.cpp:55: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/gbseq_formatter.hpp:105:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 105 | auto_ptr m_Out; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/subj_ranges_unit_test.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../core -DNCBI_APP_BUILT_AS=pssmcreate_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp -o pssmcreate_unit_test.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../core -DNCBI_APP_BUILT_AS=pssmcreate_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssm_test_util.cpp -o pssm_test_util.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../core -DNCBI_APP_BUILT_AS=pssmcreate_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/pssmcreate_cdd_unit_test.cpp -o pssmcreate_cdd_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie pssmcreate_unit_test.o pssm_test_util.o pssmcreate_cdd_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o pssmcreate_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/cigar_formatter.cpp:39: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -58741,23 +58715,14 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Dense_seg_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqalign/Dense_seg.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/cigar_formatter.cpp:35: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/sam_formatter.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +ts/common/impl/if_diff.sh /bin/ln -f pssmcreate_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f pssmcreate_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/pssmcreate_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ @@ -58770,60 +58735,177 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=traceback_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=traceback_unit_test -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqsrc_mock.cpp: In member function 'void CRandomlyFailMockBlastSeqSrc::x_PopulateBLAST_SequenceBlk(BlastSeqSrcGetSeqArg*)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqsrc_mock.cpp:149:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 149 | auto_ptr sl | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_iter.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/gather_iter.hpp:78:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 78 | auto_ptr m_BioseqIter; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/mockseqsrc1_unit_test.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/gather_iter.hpp:37: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_iter.cpp:42: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -58840,10 +58922,9 @@ 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/mapped_feat.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/feature.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:48, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/html_anchor_item.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/mockseqsrc2_unit_test.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -58851,9 +58932,8 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/items/item_base.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/items/html_anchor_item.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/html_anchor_item.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -58878,49 +58958,63 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp: In member function 'void setup_factory::CreateScoreBlockBadReward::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp:72:6: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 72 | auto_ptr opts_memento (opts.CreateSnapshot()); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp: In member function 'void setup_factory::CreateScoreBlockMaskedSequence::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp:88:6: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 88 | auto_ptr ssloc( + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_iter.cpp: In member function 'bool ncbi::objects::CGather_Iter::x_AddSeqEntryToStack(const ncbi::objects::CSeq_entry_Handle&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gather_iter.cpp:145:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 145 | auto_ptr seq_iter( new CBioseq_CI(entry, mol_type, CBioseq_CI::eLevel_Mains) ); - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp:101:6: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 101 | auto_ptr opts_memento (opts.CreateSnapshot()); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:49: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp: In member function 'void setup_factory::CreateScoreBlockOK::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp:122:6: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 122 | auto_ptr ssloc( + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp:135:6: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 135 | auto_ptr opts_memento (opts.CreateSnapshot()); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp: In function 'ncbi::blast::TSeqLocVector s_getSequences()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp:88:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 88 | auto_ptr sl( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/items/gene_finder.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gene_finder.cpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/test_objmgr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -58928,9 +59022,8 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:43: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -58946,95 +59039,35 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/items/gene_finder.hpp:42: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/simple/simple_om.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp:46: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/items/gene_finder.hpp:44: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:322:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 322 | auto_ptr m_pOpticalMapPointsDestroyer; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/context.hpp:479:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 479 | auto_ptr m_Selector; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/items/gene_finder.hpp:113:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 113 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gene_finder.cpp:78:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 78 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -ror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/inst_info_map.cpp -o inst_info_map.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/gene_finder.cpp -o gene_finder.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/objtools/format/flat_qual_slots.cpp -o flat_qual_slots.o -/bin/rm -f libxformat.so .libxformat.so.stamp -/usr/bin/g++ -std=gnu++14 -shared -o libxformat.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC accession_item.o basecount_item.o comment_item.o contig_item.o date_item.o dbsource_item.o defline_item.o feature_item.o genome_item.o ctrl_items.o keywords_item.o locus_item.o primary_item.o reference_item.o segment_item.o sequence_item.o source_item.o version_item.o wgs_item.o tsa_item.o flat_seqloc.o qualifiers.o context.o gather_items.o embl_gather.o genbank_gather.o flat_file_generator.o item_formatter.o embl_formatter.o genbank_formatter.o format_item_ostream.o item_ostream.o ostream_text_ostream.o origin_item.o ftable_gather.o ftable_formatter.o gbseq_formatter.o flat_file_config.o alignment_item.o gap_item.o genome_project_item.o sam_formatter.o cigar_formatter.o gather_iter.o html_anchor_item.o inst_info_map.o gene_finder.o flat_qual_slots.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxcleanup -lvalid -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lsubmit -lxalnmgr -lxobjutil -ltaxon3 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lm -lpthread -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxformat.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -/bin/ln -f libxformat.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libxformat.so -/bin/ln -f .xformat.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xformat.dep -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/format' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/format' -cd algo/blast/format/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ="" LIB_PROJ=xblastformat UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/format' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/format' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/format' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/format' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/format' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format TMPL=xblastformat -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/format' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastfmtutil.cpp -o blastfmtutil.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml_format.cpp -o blastxml_format.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml2_format.cpp -o blastxml2_format.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blast_format.cpp -o blast_format.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/data4xmlformat.cpp -o data4xmlformat.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/data4xml2format.cpp -o data4xml2format.o -/usr/bin/g++ -std=gnu++1In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml2_format.cpp:46: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=stat_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/stat_unit_test.cpp -o stat_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie stat_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o stat_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f stat_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f stat_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/stat_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=tracebacksearch_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=tracebacksearch_unit_test -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/vecscreen_run.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -59068,42 +59101,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ @@ -59140,12 +59137,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -59158,9 +59155,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -59173,15 +59173,43 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=seqinfosrc_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqinfosrc_unit_test.cpp -o seqinfosrc_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie seqinfosrc_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o seqinfosrc_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqinfosrc_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f seqinfosrc_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/seqinfosrc_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=uniform_search_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=uniform_search_unit_test -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=rps_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/rps_unit_test.cpp -o rps_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie rps_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o rps_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f rps_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f rps_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/rps_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=version_reference_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -59194,9 +59222,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -59209,15 +59240,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -59230,9 +59258,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -59245,12 +59276,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -59263,12 +59294,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -59281,15 +59312,26 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 414 | auto_ptr m_SamFormatter; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=version_reference_unit_test -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blast_format.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/version_reference_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -59398,29 +59440,26 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=scoreblk_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/scoreblk_unit_test.cpp -o scoreblk_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie scoreblk_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o scoreblk_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f scoreblk_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f scoreblk_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/scoreblk_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd app/blastdb/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=convert2blastmask LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb TMPL=convert2blastmask -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml_format.cpp:45: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/convert2blastmask.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -59529,31 +59568,39 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=setupfactory_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/setupfactory_unit_test.cpp -o setupfactory_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie setupfactory_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o setupfactory_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f setupfactory_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f setupfactory_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/setupfactory_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +cd app/segmasker/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=segmasker LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/segmasker' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/segmasker' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/segmasker' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/segmasker' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/segmasker' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/segmasker TMPL=segmasker -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_async_format.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blast_async_format.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/segmasker/segmasker.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -59662,95 +59709,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml2_format.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:45: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml_format.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:45: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_async_format.hpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:45: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:39: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/data4xml2format.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/data4xml2format.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/Seq_annot_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/Seq_annot.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/data4xml2format.cpp:34: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -59766,23 +59730,37 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=subj_ranges_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/subj_ranges_unit_test.cpp -o subj_ranges_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie subj_ranges_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o subj_ranges_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f subj_ranges_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f subj_ranges_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/subj_ranges_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=seqsrc_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqsrc_unit_test.cpp -o seqsrc_unit_test.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=seqsrc_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/seqsrc_mock.cpp -o seqsrc_mock.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=seqsrc_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/mockseqsrc1_unit_test.cpp -o mockseqsrc1_unit_test.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=seqsrc_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/mockseqsrc2_unit_test.cpp -o mockseqsrc2_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie seqsrc_unit_test.o seqsrc_mock.o mockseqsrc1_unit_test.o mockseqsrc2_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/data4xmlformat.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/data4xmlformat.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -59790,32 +59768,8 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/Seq_annot_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seq/Seq_annot.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/data4xmlformat.cpp:35: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml2_format.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -59831,130 +59785,124 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/sam_formatter.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/sam.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/sam.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/format/sam_formatter.hpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp: In member function 'void traceback::testBLASTNTraceBack::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:211:6: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 211 | auto_ptr qsl( + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:214:6: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 214 | auto_ptr ssl( + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp: In member function 'void traceback::testBLASTNTraceBackLargeXDrop::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:341:6: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 341 | auto_ptr qsl( + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/data4xml2format.hpp:44: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:344:6: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 344 | auto_ptr ssl( + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; - | ^~~~~~~~ +logging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o seqsrc_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqsrc_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f seqsrc_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/seqsrc_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp: In member function 'void traceback::testBLASTPTraceBack::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:479:6: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 479 | auto_ptr qsl( + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:481:6: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 481 | auto_ptr ssl( + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; - | ^~~~~~~~ +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp: In member function 'void traceback::testTBLASTNTraceBack::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:603:6: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 603 | auto_ptr qsl( + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:605:6: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 605 | auto_ptr ssl( + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp: In member function 'void traceback::testFilterBlastResults_QueryCov::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:849:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 849 | auto_ptr qsl( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:851:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 851 | auto_ptr ssl( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp: In member function 'void traceback::testFilterBlastResults_MaxHsps::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:952:6: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 952 | auto_ptr qsl( + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp:955:6: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 955 | auto_ptr ssl( + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/convert2blastmask.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:39: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/convert2blastmask.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/build_archive.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/build_archive.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/traceback_stage.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -59962,63 +59910,8 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbitime.hpp:65, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_system.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/build_archive.cpp:35: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/data4xml2format.hpp: In member function 'virtual std::string ncbi::CCmdLineBlastXML2ReportData::GetFilterString() const': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/data4xml2format.hpp:140:39: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] - 140 | m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ - | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/data4xml2format.hpp:42: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here - 178 | NCBI_DEPRECATED char* GetFilterString() const; - | ^~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml_format.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -60038,15 +59931,12 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_results.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastfmtutil.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:40: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -60062,153 +59952,199 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_search.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:56, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp:45: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/sam.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/segmasker/segmasker.cpp:44: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp: In function 'ncbi::blast::CSearchResultSet RunMultipleProteinSearch(ncbi::blast::ISearchFactory&, const std::string&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp:87:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 87 | auto_ptr sl0(CTestObjMgr::Instance().CreateSSeqLoc(query_id0)); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp:90:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 90 | auto_ptr sl1(CTestObjMgr::Instance().CreateSSeqLoc(query_id1)); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] + 94 | objects::CFastaReader::fAllSeqIds | + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here + 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/seqmasks_io/mask_fasta_reader.hpp:94:32: warning: 'ncbi::objects::CFastaReader::fAllSeqIds' is deprecated: This flag is no longer used in CFastaReader. [-Wdeprecated-declarations] + 94 | objects::CFastaReader::fAllSeqIds | + | ^~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:92:9: note: declared here + 92 | fAllSeqIds NCBI_STD_DEPRECATED("This flag is no longer used in CFastaReader.") = 1<< 6, ///< Read Seq-ids past the first ^A (see note) + | ^~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:48, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastxml2_format.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml2_format.cpp:44: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/segmasker/segmasker.cpp:52: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/segmask/segmask.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/segmasker/segmasker.cpp:55: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/data4xmlformat.hpp:44: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:56, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp: In member function 'ncbi::blast::CSearchResultSet CTracebackSearchTestFixture::x_Traceback(ncbi::CSeqDBGiList*)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp:269:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 269 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(query)); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:45: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp: In member function 'void tracebacksearch::SimpleTraceback::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp:331:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 331 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(query)); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_async_format.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp: In member function 'void tracebacksearch::TracebackWithPssm_AndWarning::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp:375:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 375 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(query)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=search_strategy_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/search_strategy_unit_test.cpp -o search_strategy_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie search_strategy_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o search_strategy_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f search_strategy_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f search_strategy_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/search_strategy_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/segmasker/segmasker.cpp: In member function 'virtual void SegMaskerApplication::Init()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/segmasker/segmasker.cpp:104:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 104 | auto_ptr arg_desc(new CArgDescriptions); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/segmasker/segmasker.cpp: In member function 'virtual int SegMaskerApplication::Run()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/segmasker/segmasker.cpp:225:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 225 | auto_ptr reader(x_GetReader()); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 449 | auto_ptr m_ConfigFile; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/segmasker/segmasker.cpp:226:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 226 | auto_ptr writer(x_GetWriter()); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 450 | auto_ptr m_Reg; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/segmasker/segmasker.cpp:239:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 239 | auto_ptr masks(masker(sequence_data)); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:39: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:50: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ @@ -60233,524 +60169,620 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1554 | static auto_ptr m_GeneInfoReader; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:41: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/convert2blastmask.cpp: In member function 'virtual void CConvert2BlastMaskApplication::Init()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/convert2blastmask.cpp:148:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 148 | auto_ptr arg_desc(new CArgDescriptions); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/convert2blastmask.cpp: In member function 'virtual int CConvert2BlastMaskApplication::Run()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/convert2blastmask.cpp:223:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 223 | auto_ptr reader(x_GetReader()); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/convert2blastmask.cpp:224:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 224 | auto_ptr writer(x_GetWriter()); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; - | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=version_reference_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/version_reference_unit_test.cpp -o version_reference_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie version_reference_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o version_reference_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f version_reference_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f version_reference_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/version_reference_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blast_format.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:49: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blast_format.cpp:49: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/data4xmlformat.hpp: In member function 'virtual std::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/data4xmlformat.hpp:155:38: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] 155 | m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/data4xmlformat.hpp:42: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:42: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here 178 | NCBI_DEPRECATED char* GetFilterString() const; | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blast_format.cpp:51: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/data4xml2format.hpp: In member function 'virtual std::string ncbi::CCmdLineBlastXML2ReportData::GetFilterString() const': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/data4xml2format.hpp:140:39: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] + 140 | m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ + | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here + 178 | NCBI_DEPRECATED char* GetFilterString() const; + | ^~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/build_archive.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blast_format.cpp:52: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp: At global scope: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 743 | auto_ptr m_ObjectStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/build_archive.cpp:43: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/search_strategy.hpp:178:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 178 | auto_ptr m_Data; +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/segmasker' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=segmasker /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/segmasker/segmasker.cpp -o segmasker.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie segmasker.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxobjsimple -lxalgosegmask -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o segmasker +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f segmasker /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f segmasker /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/segmasker +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/segmasker' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/segmasker' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=convert2blastmask /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/convert2blastmask.cpp -o convert2blastmask.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie convert2blastmask.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -llmdb -lpthread -lm -lpthread -o convert2blastmask +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f convert2blastmask /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f convert2blastmask /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/convert2blastmask +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=tracebacksearch_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/tracebacksearch_unit_test.cpp -o tracebacksearch_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie tracebacksearch_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o tracebacksearch_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f tracebacksearch_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f tracebacksearch_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/tracebacksearch_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=remote_blast_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/remote_blast_unit_test.cpp -o remote_blast_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie remote_blast_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o remote_blast_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f remote_blast_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f remote_blast_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/remote_blast_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=traceback_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/traceback_unit_test.cpp -o traceback_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie traceback_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o traceback_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f traceback_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f traceback_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/traceback_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=uniform_search_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/uniform_search_unit_test.cpp -o uniform_search_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie uniform_search_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex 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'/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=split_query_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/split_query_unit_test.cpp -o split_query_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie split_query_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o split_query_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f split_query_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f split_query_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/split_query_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/jsonwrapp11.hpp:75, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/jsonwrapp.hpp:29, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blast_format.cpp:53: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h: In instantiation of 'rapidjson::GenericValue* rapidjson::GenericValue::Erase(ConstValueIterator, ConstValueIterator) [with Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; ValueIterator = rapidjson::GenericValue >*; ConstValueIterator = const rapidjson::GenericValue >*]': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/jsonwrapp11.hpp:1431:48: required from here +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h:1702:21: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class rapidjson::GenericValue >' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] + 1702 | std::memmove(pos, last, static_cast(End() - last) * sizeof(GenericValue)); + | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h:564:7: note: 'class rapidjson::GenericValue >' declared here + 564 | class GenericValue { + | ^~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h: In instantiation of 'rapidjson::GenericValue::MemberIterator rapidjson::GenericValue::EraseMember(ConstMemberIterator, ConstMemberIterator) [with Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; MemberIterator = rapidjson::GenericMember, rapidjson::MemoryPoolAllocator<> >*; ConstMemberIterator = const rapidjson::GenericMember, rapidjson::MemoryPoolAllocator<> >*]': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/jsonwrapp11.hpp:1760:55: required from here +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h:1498:21: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'struct rapidjson::GenericMember, rapidjson::MemoryPoolAllocator<> >' with no trivial copy-assignment; use copy-assignment instead [-Wclass-memaccess] + 1498 | std::memmove(&*pos, &*last, static_cast(MemberEnd() - last) * sizeof(Member)); + | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h:88:8: note: 'struct rapidjson::GenericMember, rapidjson::MemoryPoolAllocator<> >' declared here + 88 | struct GenericMember { + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h: In instantiation of 'void rapidjson::GenericValue::SetObjectRaw(Member*, rapidjson::SizeType, Allocator&) [with Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; Member = rapidjson::GenericMember, rapidjson::MemoryPoolAllocator<> >; rapidjson::SizeType = unsigned int]': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h:2501:55: required from 'bool rapidjson::GenericDocument::EndObject(rapidjson::SizeType) [with Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; StackAllocator = rapidjson::CrtAllocator; rapidjson::SizeType = unsigned int]' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/rapidjson11/reader.h:1721:40: required from 'rapidjson::GenericReader::IterativeParsingState rapidjson::GenericReader::Transit(IterativeParsingState, Token, IterativeParsingState, InputStream&, Handler&) [with unsigned int parseFlags = 8; InputStream = rapidjson::GenericStringStream >; Handler = rapidjson::GenericDocument >; SourceEncoding = rapidjson::UTF8<>; TargetEncoding = rapidjson::UTF8<>; StackAllocator = rapidjson::CrtAllocator]' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/rapidjson11/reader.h:1817:58: required from 'rapidjson::ParseResult rapidjson::GenericReader::IterativeParse(InputStream&, Handler&) [with unsigned int parseFlags = 8; InputStream = rapidjson::GenericStringStream >; Handler = rapidjson::GenericDocument >; SourceEncoding = rapidjson::UTF8<>; TargetEncoding = rapidjson::UTF8<>; StackAllocator = rapidjson::CrtAllocator]' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/rapidjson11/reader.h:473:46: required from 'rapidjson::ParseResult rapidjson::GenericReader::Parse(InputStream&, Handler&) [with unsigned int parseFlags = 8; InputStream = rapidjson::GenericStringStream >; Handler = rapidjson::GenericDocument >; SourceEncoding = rapidjson::UTF8<>; TargetEncoding = rapidjson::UTF8<>; StackAllocator = rapidjson::CrtAllocator]' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h:2284:57: required from 'rapidjson::GenericDocument& rapidjson::GenericDocument::ParseStream(InputStream&) [with unsigned int parseFlags = 8; SourceEncoding = rapidjson::UTF8<>; InputStream = rapidjson::GenericStringStream >; Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; StackAllocator = rapidjson::CrtAllocator]' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h:2351:55: required from 'rapidjson::GenericDocument& rapidjson::GenericDocument::Parse(const typename SourceEncoding::Ch*) [with unsigned int parseFlags = 8; SourceEncoding = rapidjson::UTF8<>; Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; StackAllocator = rapidjson::CrtAllocator; typename SourceEncoding::Ch = char]' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/jsonwrapp11.hpp:2294:75: required from here +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h:2024:24: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of type 'rapidjson::GenericValue >::Member' {aka 'struct rapidjson::GenericMember, rapidjson::MemoryPoolAllocator<> >'} with no trivial copy-assignment; use copy-assignment instead [-Wclass-memaccess] + 2024 | std::memcpy(m, members, count * sizeof(Member)); + | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h:88:8: note: 'rapidjson::GenericValue >::Member' {aka 'struct rapidjson::GenericMember, rapidjson::MemoryPoolAllocator<> >'} declared here + 88 | struct GenericMember { + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h: In instantiation of 'void rapidjson::GenericValue::SetArrayRaw(rapidjson::GenericValue*, rapidjson::SizeType, Allocator&) [with Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; rapidjson::SizeType = unsigned int]': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h:2509:54: required from 'bool rapidjson::GenericDocument::EndArray(rapidjson::SizeType) [with Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; StackAllocator = rapidjson::CrtAllocator; rapidjson::SizeType = unsigned int]' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/rapidjson11/reader.h:1751:39: required from 'rapidjson::GenericReader::IterativeParsingState rapidjson::GenericReader::Transit(IterativeParsingState, Token, IterativeParsingState, InputStream&, Handler&) [with unsigned int parseFlags = 8; InputStream = rapidjson::GenericStringStream >; Handler = rapidjson::GenericDocument >; SourceEncoding = rapidjson::UTF8<>; TargetEncoding = rapidjson::UTF8<>; StackAllocator = rapidjson::CrtAllocator]' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/rapidjson11/reader.h:1817:58: required from 'rapidjson::ParseResult rapidjson::GenericReader::IterativeParse(InputStream&, Handler&) [with unsigned int parseFlags = 8; InputStream = rapidjson::GenericStringStream >; Handler = rapidjson::GenericDocument >; SourceEncoding = rapidjson::UTF8<>; TargetEncoding = rapidjson::UTF8<>; StackAllocator = rapidjson::CrtAllocator]' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/rapidjson11/reader.h:473:46: required from 'rapidjson::ParseResult rapidjson::GenericReader::Parse(InputStream&, Handler&) [with unsigned int parseFlags = 8; InputStream = rapidjson::GenericStringStream >; Handler = rapidjson::GenericDocument >; SourceEncoding = rapidjson::UTF8<>; TargetEncoding = rapidjson::UTF8<>; StackAllocator = rapidjson::CrtAllocator]' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h:2284:57: required from 'rapidjson::GenericDocument& rapidjson::GenericDocument::ParseStream(InputStream&) [with unsigned int parseFlags = 8; SourceEncoding = rapidjson::UTF8<>; InputStream = rapidjson::GenericStringStream >; Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; StackAllocator = rapidjson::CrtAllocator]' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h:2351:55: required from 'rapidjson::GenericDocument& rapidjson::GenericDocument::Parse(const typename SourceEncoding::Ch*) [with unsigned int parseFlags = 8; SourceEncoding = rapidjson::UTF8<>; Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; StackAllocator = rapidjson::CrtAllocator; typename SourceEncoding::Ch = char]' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/jsonwrapp11.hpp:2294:75: required from here +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h:2009:24: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of type 'class rapidjson::GenericValue >' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] + 2009 | std::memcpy(e, values, count * sizeof(GenericValue)); + | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h:564:7: note: 'class rapidjson::GenericValue >' declared here + 564 | class GenericValue { + | ^~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=optionshandle_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/optionshandle_unit_test.cpp -o optionshandle_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie optionshandle_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o optionshandle_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f optionshandle_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f optionshandle_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/optionshandle_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 449 | auto_ptr m_ConfigFile; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/search_strategy.hpp:181:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 181 | auto_ptr m_OptionsBuilder; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 450 | auto_ptr m_Reg; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_vector.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/simple/simple_om.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:48, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastxml_format.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml_format.cpp:43: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; - | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/igblast' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/igblast/igblast.cpp -o igblast.o +/bin/rm -f libigblast.so .libigblast.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libigblast.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC igblast.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxconnect -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libigblast.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libigblast.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libigblast.so +/bin/ln -f .igblast.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.igblast.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/igblast' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/igblast' +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp: In member function 'void BlastExtend::testGapAlignment::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:259:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 259 | auto_ptr qsl( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:262:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 262 | auto_ptr ssl( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp: In member function 'void BlastExtend::testGreedyAlignment::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:345:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 345 | auto_ptr qsl( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:53: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:348:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 348 | auto_ptr ssl( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 449 | auto_ptr m_ConfigFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp: In member function 'void BlastExtend::testGreedyAlignmentWithBadStart::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:457:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 457 | auto_ptr qsl( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 450 | auto_ptr m_Reg; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp:461:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 461 | auto_ptr ssl( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:49: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ +RTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/magicblast_args.cpp -o magicblast_args.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/kblastp_args.cpp -o kblastp_args.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/blast_asn1_input.cpp -o blast_asn1_input.o +/bin/rm -f libblastinput.so .libblastinput.so.stamp +/usr/bin/g++ -std=gnu++14 -shared -o libblastinput.so -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIC blast_input.o blast_fasta_input.o blast_scope_src.o blast_args.o cmdline_flags.o blast_input_aux.o blastp_args.o blastn_args.o rmblastn_args.o blastx_args.o tblastn_args.o tblastx_args.o psiblast_args.o rpsblast_args.o rpstblastn_args.o igblastn_args.o igblastp_args.o deltablast_args.o magicblast_args.o kblastp_args.o blast_asn1_input.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lxblast -lalign_format -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lseqdb -lxobjread -lxobjread -lvariation -lsubmit -lxlogging -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lxutil -lncbi_xloader_genbank -lncbi_xreader_id2 -lncbi_xreader -lscoremat -lseqset -lseq -lxser -lxutil -lxncbi -llmdb -lpthread -lm -lpthread +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f libblastinput.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib +/bin/ln -f libblastinput.so /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib/libblastinput.so +/bin/ln -f .blastinput.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.blastinput.dep +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp: In member function 'void blastengine::testBlastpPrelimSearch::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:452:29: warning: 'void ncbi::blast::CBlastOptions::SetFilterString(const char*, bool)' is deprecated [-Wdeprecated-declarations] + 452 | options->SetFilterString("L"); /* NCBI_FAKE_WARNING */ + | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_nucl_options.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp:53: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:180:26: note: declared here + 180 | NCBI_DEPRECATED void SetFilterString(const char* f, bool clear = true); + | ^~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=blastsetup_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastsetup_unit_test.cpp -o blastsetup_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blastsetup_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o blastsetup_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastsetup_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f blastsetup_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastsetup_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=proteinkmer_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/proteinkmer/unit_test/proteinkmer_unit_test.cpp -o proteinkmer_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie proteinkmer_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lproteinkmer -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o proteinkmer_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f proteinkmer_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f proteinkmer_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/proteinkmer_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:42: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastfmtutil.cpp: In static member function 'static void ncbi::CBlastFormatUtil::PrintAsciiPssm(const ncbi::objects::CPssmWithParameters&, ncbi::CConstRef, ncbi::CNcbiOstream&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastfmtutil.cpp:205:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 205 | auto_ptr< TNcbiMatrixInt > pssm +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastfmtutil.cpp:207:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 207 | auto_ptr< TNcbiMatrixDouble > weighted_res_freqs - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api/dust_filter.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:58: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:159:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 159 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq ); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/dustmask/symdust.hpp:168:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 168 | std::auto_ptr< TMaskList > operator()( const sequence_type & seq, + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In static member function 'static void CBlastFilterTest::x_TestLowerCaseMaskWith(ncbi::objects::ENa_strand, bool)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:189:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 189 | auto_ptr qsl( + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In function 'void blastfilter::x_TestGetFilteredQueryRegions(ncbi::objects::ENa_strand)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:333:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 333 | auto_ptr qsl( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::SegFilter::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:473:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 473 | auto_ptr qsl(CTestObjMgr::Instance().CreateSSeqLoc(id)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::RepeatsFilter::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:513:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 513 | auto_ptr qsl( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 449 | auto_ptr m_ConfigFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::WindowMasker::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:575:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 575 | auto_ptr | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 450 | auto_ptr m_Reg; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::RepeatsFilter_OnSeqInterval::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:625:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 625 | auto_ptr qsl( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 414 | auto_ptr m_SamFormatter; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::RepeatsAndDustFilter::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:707:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 707 | auto_ptr qsl1(CTestObjMgr::Instance().CreateSSeqLoc(id1)); | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_async_format.hpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 449 | auto_ptr m_ConfigFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:712:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 712 | auto_ptr qsl2(CTestObjMgr::Instance().CreateSSeqLoc(id2)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 450 | auto_ptr m_Reg; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::WindowMaskerAndDustFilter::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:734:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 734 | auto_ptr qsl1(CTestObjMgr::Instance().CreateSSeqLoc(id1)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml_format.cpp: In function 'void ncbi::s_SeqAlignSetToXMLHits(std::__cxx11::list >&, const objects::CSeq_align_set&, objects::CScope*, const CBlastFormattingMatrix*, const TMaskedQueryRegions*, bool, int, int, CNcbiOstream*)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml_format.cpp:501:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 501 | auto_ptr xml_one_hit_os (new CObjectOStreamXml (one_hit_os,false)); - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:739:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 739 | auto_ptr qsl2(CTestObjMgr::Instance().CreateSSeqLoc(id2)); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml_format.cpp:501:100: warning: 'ncbi::CObjectOStreamXml::CObjectOStreamXml(ncbi::CNcbiOstream&, bool)' is deprecated [-Wdeprecated-declarations] - 501 | auto_ptr xml_one_hit_os (new CObjectOStreamXml (one_hit_os,false)); - | ^ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/objostrxml.hpp:66:26: note: declared here - 66 | NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut)); - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:1192:38: note: in definition of macro 'NCBI_DEPRECATED_CTOR' - 1192 | # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED - | ^~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml_format.cpp: In function 'void ncbi::BlastXML_FormatReport(objects::CBlastOutput&, const IBlastXMLReportData*, CNcbiOstream*, SBlastXMLIncremental*)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml_format.cpp:719:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 719 | auto_ptr< CBlastFormattingMatrix > matrix(data->GetMatrix()); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::WindowMasker_OnSeqInterval::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:772:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 772 | auto_ptr | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml_format.cpp: In function 'bool ncbi::s_SerializeAndSplitBy(const CSerialObject&, const char*, std::string&, std::string&, bool, bool)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml_format.cpp:785:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 785 | auto_ptr xml_one_iter_os(new CObjectOStreamXml (one_iter_ss_os,false)); - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::RepeatsFilter_NoHitsFound::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:807:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 807 | auto_ptr qsl( + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml_format.cpp:785:96: warning: 'ncbi::CObjectOStreamXml::CObjectOStreamXml(ncbi::CNcbiOstream&, bool)' is deprecated [-Wdeprecated-declarations] - 785 | auto_ptr xml_one_iter_os(new CObjectOStreamXml (one_iter_ss_os,false)); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/objostrxml.hpp:66:26: note: declared here - 66 | NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut)); - | ^~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:1192:38: note: in definition of macro 'NCBI_DEPRECATED_CTOR' - 1192 | # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED - | ^~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::WindowMasker_NoHitsFound::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:822:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 822 | auto_ptr qsl | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::RepeatsFilterWithMissingParameter::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:838:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 838 | auto_ptr qsl(CTestObjMgr::Instance().CreateSSeqLoc(id)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::WindowMaskerWithMissingParameter::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:851:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 851 | auto_ptr qsl(CTestObjMgr::Instance().CreateSSeqLoc(id)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::CombineRepeatAndLowerCaseMask::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:1135:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1135 | auto_ptr qsl( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::CombineRepeatAndDustFilter::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:1178:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1178 | auto_ptr qsl( + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::FilterLocNuclBoth::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:1212:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1212 | auto_ptr qsl( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:53: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::FilterLocNuclPlus::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:1242:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1242 | auto_ptr qsl( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::FilterLocNuclMinus::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:1272:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1272 | auto_ptr qsl( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::FilterLocProtein::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:1305:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1305 | auto_ptr qsl(CTestObjMgr::Instance().CreateSSeqLoc(id)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::MaskProteinSequence::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:1349:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1349 | auto_ptr qsl(CTestObjMgr::Instance().CreateSSeqLoc(id)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 449 | auto_ptr m_ConfigFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::MaskNucleotideBothStrands::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:1399:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1399 | auto_ptr qsl(CTestObjMgr::Instance().CreateSSeqLoc(id, | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 450 | auto_ptr m_Reg; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp: In member function 'void blastfilter::FilterMultipleQueriesLocNuclPlus::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:1484:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1484 | auto_ptr qsl1( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 414 | auto_ptr m_SamFormatter; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:1487:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1487 | auto_ptr qsl2( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:53: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp:1490:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1490 | auto_ptr qsl3( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=blastengine_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastengine_unit_test.cpp -o blastengine_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blastengine_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o blastengine_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastengine_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f blastengine_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastengine_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=blastextend_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastextend_unit_test.cpp -o blastextend_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blastextend_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o blastextend_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastextend_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f blastextend_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastextend_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=seqdb_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/seqdb_reader/seqdb_unit_test.cpp -o seqdb_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie seqdb_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lseqdb -lwritedb -lxobjutil -lblastdb -lxobjread -lvariation -lsubmit -lxlogging -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -llmdb -lpthread -lm -lpthread -o seqdb_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f seqdb_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f seqdb_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/seqdb_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:49: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 449 | auto_ptr m_ConfigFile; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blast_format.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 450 | auto_ptr m_Reg; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml_format.cpp: In function 'void ncbi::s_SeqAlignSetToXMLHits(std::__cxx11::list >&, const objects::CSeq_align_set&, objects::CScope*, const CBlastFormattingMatrix*, const TMaskedQueryRegions*, bool, int, int, CNcbiOstream*)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml_format.cpp:501:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 501 | auto_ptr xml_one_hit_os (new CObjectOStreamXml (one_hit_os,false)); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blast_format.cpp:49: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/data4xmlformat.hpp: In member function 'virtual std::string ncbi::CCmdLineBlastXMLReportData::GetFilterString() const': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/data4xmlformat.hpp:155:38: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] - 155 | m_Options.GetFilterString(); /* NCBI_FAKE_WARNING */ - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options_handle.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/uniform_search.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:42: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here - 178 | NCBI_DEPRECATED char* GetFilterString() const; - | ^~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blast_format.cpp:51: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/data4xml2format.hpp: In member function 'virtual std::string ncbi::CCmdLineBlastXML2ReportData::GetFilterString() const': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/data4xml2format.hpp:140:39: warning: 'char* ncbi::blast::CBlastOptions::GetFilterString() const' is deprecated [-Wdeprecated-declarations] - 140 | m_Options->GetFilterString(); /* NCBI_FAKE_WARNING */ - | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:178:27: note: declared here - 178 | NCBI_DEPRECATED char* GetFilterString() const; - | ^~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/build_archive.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blast_format.cpp:52: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp: At global scope: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml_format.cpp:501:100: warning: 'ncbi::CObjectOStreamXml::CObjectOStreamXml(ncbi::CNcbiOstream&, bool)' is deprecated [-Wdeprecated-declarations] + 501 | auto_ptr xml_one_hit_os (new CObjectOStreamXml (one_hit_os,false)); + | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/objostrxml.hpp:66:26: note: declared here + 66 | NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut)); + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:1192:38: note: in definition of macro 'NCBI_DEPRECATED_CTOR' + 1192 | # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED + | ^~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml_format.cpp: In function 'void ncbi::BlastXML_FormatReport(objects::CBlastOutput&, const IBlastXMLReportData*, CNcbiOstream*, SBlastXMLIncremental*)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml_format.cpp:719:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 719 | auto_ptr< CBlastFormattingMatrix > matrix(data->GetMatrix()); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 414 | auto_ptr m_SamFormatter; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml_format.cpp: In function 'bool ncbi::s_SerializeAndSplitBy(const CSerialObject&, const char*, std::string&, std::string&, bool, bool)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml_format.cpp:785:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 785 | auto_ptr xml_one_iter_os(new CObjectOStreamXml (one_iter_ss_os,false)); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blast_async_format.cpp: In member function 'virtual void* CBlastAsyncFormatThread::Main()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blast_async_format.cpp:122:49: warning: comparison of integer expressions of different signedness: 'std::map >::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare] - 122 | if (m_ResultsMap.size() != currNum) - | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/jsonwrapp11.hpp:75, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/jsonwrapp.hpp:29, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blast_format.cpp:53: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h: In instantiation of 'rapidjson::GenericValue* rapidjson::GenericValue::Erase(ConstValueIterator, ConstValueIterator) [with Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; ValueIterator = rapidjson::GenericValue >*; ConstValueIterator = const rapidjson::GenericValue >*]': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/jsonwrapp11.hpp:1431:48: required from here -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h:1702:21: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class rapidjson::GenericValue >' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] - 1702 | std::memmove(pos, last, static_cast(End() - last) * sizeof(GenericValue)); - | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h:564:7: note: 'class rapidjson::GenericValue >' declared here - 564 | class GenericValue { - | ^~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h: In instantiation of 'rapidjson::GenericValue::MemberIterator rapidjson::GenericValue::EraseMember(ConstMemberIterator, ConstMemberIterator) [with Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; MemberIterator = rapidjson::GenericMember, rapidjson::MemoryPoolAllocator<> >*; ConstMemberIterator = const rapidjson::GenericMember, rapidjson::MemoryPoolAllocator<> >*]': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/jsonwrapp11.hpp:1760:55: required from here -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h:1498:21: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'struct rapidjson::GenericMember, rapidjson::MemoryPoolAllocator<> >' with no trivial copy-assignment; use copy-assignment instead [-Wclass-memaccess] - 1498 | std::memmove(&*pos, &*last, static_cast(MemberEnd() - last) * sizeof(Member)); - | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h:88:8: note: 'struct rapidjson::GenericMember, rapidjson::MemoryPoolAllocator<> >' declared here - 88 | struct GenericMember { - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h: In instantiation of 'void rapidjson::GenericValue::SetObjectRaw(Member*, rapidjson::SizeType, Allocator&) [with Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; Member = rapidjson::GenericMember, rapidjson::MemoryPoolAllocator<> >; rapidjson::SizeType = unsigned int]': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h:2501:55: required from 'bool rapidjson::GenericDocument::EndObject(rapidjson::SizeType) [with Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; StackAllocator = rapidjson::CrtAllocator; rapidjson::SizeType = unsigned int]' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/rapidjson11/reader.h:1721:40: required from 'rapidjson::GenericReader::IterativeParsingState rapidjson::GenericReader::Transit(IterativeParsingState, Token, IterativeParsingState, InputStream&, Handler&) [with unsigned int parseFlags = 8; InputStream = rapidjson::GenericStringStream >; Handler = rapidjson::GenericDocument >; SourceEncoding = rapidjson::UTF8<>; TargetEncoding = rapidjson::UTF8<>; StackAllocator = rapidjson::CrtAllocator]' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/rapidjson11/reader.h:1817:58: required from 'rapidjson::ParseResult rapidjson::GenericReader::IterativeParse(InputStream&, Handler&) [with unsigned int parseFlags = 8; InputStream = rapidjson::GenericStringStream >; Handler = rapidjson::GenericDocument >; SourceEncoding = rapidjson::UTF8<>; TargetEncoding = rapidjson::UTF8<>; StackAllocator = rapidjson::CrtAllocator]' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/rapidjson11/reader.h:473:46: required from 'rapidjson::ParseResult rapidjson::GenericReader::Parse(InputStream&, Handler&) [with unsigned int parseFlags = 8; InputStream = rapidjson::GenericStringStream >; Handler = rapidjson::GenericDocument >; SourceEncoding = rapidjson::UTF8<>; TargetEncoding = rapidjson::UTF8<>; StackAllocator = rapidjson::CrtAllocator]' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h:2284:57: required from 'rapidjson::GenericDocument& rapidjson::GenericDocument::ParseStream(InputStream&) [with unsigned int parseFlags = 8; SourceEncoding = rapidjson::UTF8<>; InputStream = rapidjson::GenericStringStream >; Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; StackAllocator = rapidjson::CrtAllocator]' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h:2351:55: required from 'rapidjson::GenericDocument& rapidjson::GenericDocument::Parse(const typename SourceEncoding::Ch*) [with unsigned int parseFlags = 8; SourceEncoding = rapidjson::UTF8<>; Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; StackAllocator = rapidjson::CrtAllocator; typename SourceEncoding::Ch = char]' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/jsonwrapp11.hpp:2294:75: required from here -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h:2024:24: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of type 'rapidjson::GenericValue >::Member' {aka 'struct rapidjson::GenericMember, rapidjson::MemoryPoolAllocator<> >'} with no trivial copy-assignment; use copy-assignment instead [-Wclass-memaccess] - 2024 | std::memcpy(m, members, count * sizeof(Member)); - | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h:88:8: note: 'rapidjson::GenericValue >::Member' {aka 'struct rapidjson::GenericMember, rapidjson::MemoryPoolAllocator<> >'} declared here - 88 | struct GenericMember { - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h: In instantiation of 'void rapidjson::GenericValue::SetArrayRaw(rapidjson::GenericValue*, rapidjson::SizeType, Allocator&) [with Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; rapidjson::SizeType = unsigned int]': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h:2509:54: required from 'bool rapidjson::GenericDocument::EndArray(rapidjson::SizeType) [with Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; StackAllocator = rapidjson::CrtAllocator; rapidjson::SizeType = unsigned int]' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/rapidjson11/reader.h:1751:39: required from 'rapidjson::GenericReader::IterativeParsingState rapidjson::GenericReader::Transit(IterativeParsingState, Token, IterativeParsingState, InputStream&, Handler&) [with unsigned int parseFlags = 8; InputStream = rapidjson::GenericStringStream >; Handler = rapidjson::GenericDocument >; SourceEncoding = rapidjson::UTF8<>; TargetEncoding = rapidjson::UTF8<>; StackAllocator = rapidjson::CrtAllocator]' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/rapidjson11/reader.h:1817:58: required from 'rapidjson::ParseResult rapidjson::GenericReader::IterativeParse(InputStream&, Handler&) [with unsigned int parseFlags = 8; InputStream = rapidjson::GenericStringStream >; Handler = rapidjson::GenericDocument >; SourceEncoding = rapidjson::UTF8<>; TargetEncoding = rapidjson::UTF8<>; StackAllocator = rapidjson::CrtAllocator]' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/rapidjson11/reader.h:473:46: required from 'rapidjson::ParseResult rapidjson::GenericReader::Parse(InputStream&, Handler&) [with unsigned int parseFlags = 8; InputStream = rapidjson::GenericStringStream >; Handler = rapidjson::GenericDocument >; SourceEncoding = rapidjson::UTF8<>; TargetEncoding = rapidjson::UTF8<>; StackAllocator = rapidjson::CrtAllocator]' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h:2284:57: required from 'rapidjson::GenericDocument& rapidjson::GenericDocument::ParseStream(InputStream&) [with unsigned int parseFlags = 8; SourceEncoding = rapidjson::UTF8<>; InputStream = rapidjson::GenericStringStream >; Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; StackAllocator = rapidjson::CrtAllocator]' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h:2351:55: required from 'rapidjson::GenericDocument& rapidjson::GenericDocument::Parse(const typename SourceEncoding::Ch*) [with unsigned int parseFlags = 8; SourceEncoding = rapidjson::UTF8<>; Encoding = rapidjson::UTF8<>; Allocator = rapidjson::MemoryPoolAllocator<>; StackAllocator = rapidjson::CrtAllocator; typename SourceEncoding::Ch = char]' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/jsonwrapp11.hpp:2294:75: required from here -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h:2009:24: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of type 'class rapidjson::GenericValue >' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] - 2009 | std::memcpy(e, values, count * sizeof(GenericValue)); - | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/misc/jsonwrapp/rapidjson11/document.h:564:7: note: 'class rapidjson::GenericValue >' declared here - 564 | class GenericValue { - | ^~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/blastxml_format.cpp:785:96: warning: 'ncbi::CObjectOStreamXml::CObjectOStreamXml(ncbi::CNcbiOstream&, bool)' is deprecated [-Wdeprecated-declarations] + 785 | auto_ptr xml_one_iter_os(new CObjectOStreamXml (one_iter_ss_os,false)); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/objostrxml.hpp:66:26: note: declared here + 66 | NCBI_DEPRECATED_CTOR(CObjectOStreamXml(CNcbiOstream& out, bool deleteOut)); + | ^~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:1192:38: note: in definition of macro 'NCBI_DEPRECATED_CTOR' + 1192 | # define NCBI_DEPRECATED_CTOR(decl) decl NCBI_DEPRECATED + | ^~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=blastfilter_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blastfilter_unit_test.cpp -o blastfilter_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blastfilter_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o blastfilter_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastfilter_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f blastfilter_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastfilter_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' 4 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/build_archive.cpp -o build_archive.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/vecscreen_run.cpp -o vecscreen_run.o /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/format/sam.cpp -o sam.o @@ -60762,130 +60794,240 @@ /bin/ln -f .xblastformat.dep /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/.xblastformat.dep make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/format' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/format' -cd algo/blast/blastinput/unit_test/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=blastinput_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=bl2seq_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=blast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=delta_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=magicblast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/blastinput/unit_test/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=blastinput_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=bl2seq_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=blast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=delta_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=psiblast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j21 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=magicblast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=redoalignment_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=psiblast_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/api/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=redoalignment_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd algo/blast/unit_tests/blast_format/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=blast_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd algo/blast/unit_tests/blastdb/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=bdbloader_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -cd algo/blast/unit_tests/blast_format/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=blast_format_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j21 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -cd algo/blast/unit_tests/blastdb/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=bdbloader_unit_test LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -cd app/blast/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=blast_formatter LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd app/blast/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=blast_formatter LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd app/blast/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=blast_report LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -cd app/blast/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=blast_report LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd app/blast/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=blastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd app/blast/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=blastp LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd app/blast/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=blastx LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd app/blast/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=deltablast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd app/blast/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=psiblast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd app/blast/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=rpsblast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd app/blast/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=rpstblastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd app/blast/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=seedtop LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +cd app/blast/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=tblastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +cd app/blast/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=tblastx LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test TMPL=blastinput_unit_test -w -j11 --jobserver-auth=7,8 all +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=magicblast_unit_test -w -j11 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blastdb TMPL=bdbloader_unit_test -w -j11 --jobserver-auth=7,8 all +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format TMPL=blast_format_unit_test -w -j11 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast TMPL=blastx -w -j21 --jobserver-auth=7,8 all make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=delta_unit_test -w -j11 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=bl2seq_unit_test -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=redoalignment_unit_test -w -j11 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast TMPL=blast_report -w -j11 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=psiblast_unit_test -w -j11 --jobserver-auth=7,8 all -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=blast_unit_test -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast TMPL=blast_formatter -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=delta_unit_test -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast TMPL=blastp -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blastdb TMPL=bdbloader_unit_test -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format TMPL=blast_format_unit_test -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=psiblast_unit_test -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test TMPL=blastinput_unit_test -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast TMPL=blast_formatter -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=blast_unit_test -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast TMPL=deltablast -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=magicblast_unit_test -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast TMPL=blastn -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast TMPL=blast_report -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast TMPL=seedtop -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast TMPL=tblastx -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=bl2seq_unit_test -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast TMPL=rpsblast -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast TMPL=rpstblastn -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast TMPL=psiblast -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api TMPL=redoalignment_unit_test -w -j21 --jobserver-auth=7,8 all +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast TMPL=tblastn -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/magicblast_unit_test.cpp:32: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -60920,47 +61062,34 @@ 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ + 158 | const SBuildInfo& build_infIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastn_node.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastn_app.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_app.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_node.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -60970,20 +61099,7 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SB NCBI_BUILD_TAG_PROXY) | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ @@ -60991,25 +61107,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/vUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' @@ -61019,10 +61120,7 @@ 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + 52 | # define NCBI_BUILD_TIMNCBI_BUILD_TAG_PROXY) | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ @@ -61030,8 +61128,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/veo = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) @@ -61106,8 +61206,7 @@ 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/delta_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_node.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -61216,11 +61315,8 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_unit_test.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) +ersion.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ @@ -61229,19 +61325,7 @@ 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + 104 | NCBI_SBUILDINFO_DEE __DATE__ " " __TIME__ | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) @@ -61252,6 +61336,11 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macrFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ @@ -61327,10 +61416,11 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_report.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] +o 'NCBI_SBUILDINFO_DEFAULT' 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ @@ -61344,12 +61434,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -61365,9 +61455,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -61386,6 +61473,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -61416,51 +61506,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -61473,12 +61524,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -61491,12 +61539,15 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -61509,12 +61560,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -61549,7 +61597,8 @@ 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_formatter.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/magicblast_unit_test.cpp:32: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -61659,8 +61708,22 @@ 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/psiblast_app.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIMEIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:34: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_app.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -61668,7 +61731,7 @@ 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, , NCBI_BUILD_TAG_PROXY) | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ @@ -61700,6 +61763,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ +/build/reproducible-path/ncbirsion.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -61707,79 +61773,7 @@ 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + 104 | NCBI_SBUILDINFO_DEFNCBI_BUILD_TAG_PROXY) | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ @@ -61822,14 +61816,7 @@ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + | -blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' @@ -61841,91 +61828,35 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:51: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansioIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_node.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_app.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion n of macro 'NCBI_BUILD_TIME' 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' @@ -61934,16 +61865,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + | ^~~~~~~~~~~of macro 'NCBI_BUILD_TIME' 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' @@ -61954,7 +61878,7 @@ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ + | ^~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -61964,18 +61888,10 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: ~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -61988,15 +61904,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp:47: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ + | | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -62016,23 +61929,18 @@ 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 52 | # define NCBI_BUILD_TIME in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -62042,15 +61950,18 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ +/build/reproducible-path/ncbi-b ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -62060,16 +61971,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +last+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' @@ -62080,13 +61988,19 @@ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | EFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ + | ^~~~~~~~~~~~~~~~~~~~~~~ + ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -62099,18 +62013,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blast_input_unit_test_aux.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:64: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~__DATE__ " " __TIME__ | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) @@ -62124,9 +62029,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -62142,26 +62044,21 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/versio~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: inn.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ @@ -62171,23 +62068,7 @@ | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + | expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' @@ -62214,13 +62095,13 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_report.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ +^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -62233,16 +62114,15 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_formatter.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -62255,15 +62135,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp:51: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -62276,12 +62150,15 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -62294,12 +62171,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -62312,12 +62186,15 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -62330,12 +62207,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -62369,15 +62243,6 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blast_format_unit_test.cpp:54: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -62430,62 +62295,17 @@ 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ + 177 | const SBuildInfo& build_info =In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_formatter.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_T NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -62495,23 +62315,7 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:55: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion IME, NCBI_BUILD_TAG_PROXY) | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ @@ -62543,34 +62347,7 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' +/build/reproducible-path/nof macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' @@ -62612,49 +62389,7 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp:53: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] +cbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' @@ -62723,950 +62458,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp:35: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:35: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:38: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_report.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_formatter.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:45: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blast_format_unit_test.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blast_format_unit_test.cpp:35: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:35: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_formatter.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/delta_unit_test.cpp:47: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_report.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp:42: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/magicblast.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/magicblast_unit_test.cpp:54: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/vecscreen_run.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp:48: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptrIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 449 | auto_ptr m_ConfigFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 450 | auto_ptr m_Reg; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:48: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 449 | auto_ptr m_ConfigFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 450 | auto_ptr m_Reg; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/psiblast.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:56, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/delta_unit_test.cpp:66: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/bl2seq.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/seqinfosrc_seqdb.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_loc_.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_loc.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp:35: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blast_format_unit_test.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:46: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/seq_loc_util.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:51: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:53: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:53: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp: In member function 'void blastfmtutil::GetAlnScoresAndGetScoreString::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:168:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 168 | auto_ptr in(CObjectIStream::Open(eSerial_AsnText, is)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp: In member function 'void blastfmtutil::GetSubjectQueryCoverageScore::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:201:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 201 | auto_ptr in(CObjectIStream::Open(eSerial_AsnText, is)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blast_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_unit_test.cpp -o blast_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blast_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o blast_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f blast_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blast_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp:44: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd app/blast/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=blastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 414 | auto_ptr m_SamFormatter; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast TMPL=blastn -w -j11 --jobserver-auth=7,8 all -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:52: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -/usmake[5]: warning: -j11 forced in submake: resetting jobserver mode. -r/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:49: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 414 | auto_ptr m_SamFormatter; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_report.cpp: In member function 'virtual void CBlastReportApp::Init()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_report.cpp:107:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 107 | auto_ptr arg_desc(new CArgDescriptions); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_formatter.cpp:45: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 771 | auto_ptr m_BaseTSE; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp:43: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_node.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/delta_unit_test.cpp:34: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -63776,7 +62570,7 @@ 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_app.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_node.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -63885,1513 +62679,31 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_node.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_app.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blast_format_unit_test.cpp:42: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp: In function 'void s_LoadSeqAlignsFromFile(ncbi::objects::CSeq_align_set&, const std::string&)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp:241:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 241 | auto_ptr asn_in(CObjectIStream::Open(fname, eSerial_AsnText)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_formatter.cpp: In member function 'virtual void CBlastFormatterApp::Init()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_formatter.cpp:116:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 116 | auto_ptr arg_desc(new CArgDescriptions); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:54: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:61: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blastp_args.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:57: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/build_archive.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:52: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:68: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::ProteinBlastSelfHit::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:584:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 584 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(id)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::TBlastn2Seqs::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:627:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 627 | auto_ptr query(CTestObjMgr::Instance().CreateSSeqLoc(qid)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:630:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 630 | auto_ptr subj( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::TBlastn2SeqsRevStrand1::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:666:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 666 | auto_ptr query(CTestObjMgr::Instance().CreateSSeqLoc(qid)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:670:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 670 | auto_ptr subj(CTestObjMgr::Instance().CreateSSeqLoc(sid, range, eNa_strand_minus)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::TBlastn2SeqsRevStrand2::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:694:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 694 | auto_ptr query(CTestObjMgr::Instance().CreateSSeqLoc(qid)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:697:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 697 | auto_ptr subj(CTestObjMgr::Instance().CreateSSeqLoc(sid, eNa_strand_minus)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::TBlastn2SeqsCompBasedStats::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:720:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 720 | auto_ptr query(CTestObjMgr::Instance().CreateSSeqLoc(qid)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:723:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 723 | auto_ptr subj( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::TBlastn2SeqsLargeWord::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:755:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 755 | auto_ptr query(CTestObjMgr::Instance().CreateSSeqLoc(qid)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:758:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 758 | auto_ptr subj( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::IdenticalProteins::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:789:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 789 | auto_ptr query(CTestObjMgr::Instance().CreateSSeqLoc(qid)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:791:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 791 | auto_ptr subj(CTestObjMgr::Instance().CreateSSeqLoc(sid)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::PositiveMismatchOption::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:835:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 835 | auto_ptr query( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:837:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 837 | auto_ptr subj(CTestObjMgr::Instance().CreateSSeqLoc(sid)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::FullyMaskedSequence::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:860:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 860 | auto_ptr query( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:866:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 866 | auto_ptr subj( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::MultipleQueries1FullyMasked::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:900:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 900 | auto_ptr envvar1, envvar2; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::testInterruptBlastpExitImmediately::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:938:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 938 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(id)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::Tblastn2Seqs_PlusStrandOnly::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:957:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 957 | auto_ptr ql(CTestObjMgr::Instance().CreateSSeqLoc(qid)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:963:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 963 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(sid, - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::testInterruptBlastSetup::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:998:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 998 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(id)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::testInterruptBlastnExitImmediately::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1014:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1014 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(id)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::testInterruptBlastxExitImmediately::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1030:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1030 | auto_ptr slq(CTestObjMgr::Instance().CreateSSeqLoc(query_id)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1032:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1032 | auto_ptr sls(CTestObjMgr::Instance().CreateSSeqLoc(subj_id)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::testInterruptTblastxExitImmediately::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1048:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1048 | auto_ptr slq(CTestObjMgr::Instance().CreateSSeqLoc(query_id)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1050:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1050 | auto_ptr sls(CTestObjMgr::Instance().CreateSSeqLoc(subj_id)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::testInterruptTblastnExitImmediately::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1066:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1066 | auto_ptr slq(CTestObjMgr::Instance().CreateSSeqLoc(query_id)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1068:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1068 | auto_ptr sls(CTestObjMgr::Instance().CreateSSeqLoc(subj_id)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:65: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::testInterruptBlastpExitAfter3Callbacks::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1276:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1276 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(id)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::NucleotideBlastMultipleQueriesWithInvalidSeqId::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1426:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1426 | auto_ptr sl1(CTestObjMgr::Instance().CreateSSeqLoc(*id1)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1428:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1428 | auto_ptr sl2(CTestObjMgr::Instance().CreateSSeqLoc(*id2)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1446:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1446 | auto_ptr sl_bad(new SSeqLoc(*fake_loc, *scope)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1458:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1458 | auto_ptr subj_loc - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp: In static member function 'static void CRedoAlignmentTestFixture::runRedoAlignmentCoreUnitTest(EBlastProgramType, ncbi::objects::CSeq_id&, ncbi::objects::CSeq_id&, BlastHSPList*, const BlastHSPList*, Int8, ECompoAdjustModes, bool, double, int)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:210:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 210 | auto_ptr qsl(CTestObjMgr::Instance().CreateSSeqLoc(qid)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:211:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 211 | auto_ptr ssl(CTestObjMgr::Instance().CreateSSeqLoc(sid)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp: In member function 'void RedoAlignment::testRedoAlignmentWithCompBasedStatsBadlyBiasedSequence::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:636:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 636 | auto_ptr ssl(CTestObjMgr::Instance().CreateSSeqLoc(subj_id)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 449 | auto_ptr m_ConfigFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 450 | auto_ptr m_Reg; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::ProteinCompBasedStats::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1620:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1620 | auto_ptr ss2(CTestObjMgr::Instance().CreateSSeqLoc(id)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::Blastx2Seqs_QueryBothStrands::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1640:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1640 | auto_ptr query( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1645:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1645 | auto_ptr subj(CTestObjMgr::Instance().CreateSSeqLoc(sid)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::NucleotideSelfHitWithSubjectMask::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1672:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1672 | auto_ptr subject(new SSeqLoc(ssl, scope, subj_mask)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::NucleotideBlastSelfHit::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1690:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1690 | auto_ptr sl( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::MegablastGreedyTraceback::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1724:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1724 | auto_ptr ql( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1729:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1729 | auto_ptr sl( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::MegablastGreedyTracebackSelfHits::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1844:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1844 | auto_ptr ql( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1849:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1849 | auto_ptr sl( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::Blastx2Seqs_QueryPlusStrand::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1878:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1878 | auto_ptr query( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1882:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1882 | auto_ptr subj(CTestObjMgr::Instance().CreateSSeqLoc(sid)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::Blastx2Seqs_QueryMinusStrand::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1892:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1892 | auto_ptr query( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1896:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1896 | auto_ptr subj(CTestObjMgr::Instance().CreateSSeqLoc(sid)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::TBlastx2Seqs_QueryBothStrands::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1907:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1907 | auto_ptr sl( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::TBlastx2Seqs_QueryPlusStrand::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1920:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1920 | auto_ptr sl( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::TBlastx2Seqs_QueryMinusStrand::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1931:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1931 | auto_ptr sl( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::TblastxManyHits::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1949:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1949 | auto_ptr qsl( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1953:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1953 | auto_ptr ssl( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::ProteinBlast2Seqs::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1986:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1986 | auto_ptr query(CTestObjMgr::Instance().CreateSSeqLoc(id)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1989:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1989 | auto_ptr subj(CTestObjMgr::Instance().CreateSSeqLoc(id)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::BlastnWithRepeatFiltering_InvalidDB::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2001:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2001 | auto_ptr query( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::BlastnWithRepeatFiltering::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2022:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2022 | auto_ptr query( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::BlastnWithWindowMasker_Db::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2052:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2052 | auto_ptr query( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::BlastnWithWindowMasker_Taxid::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2072:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2072 | auto_ptr query( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::BlastnWithWindowMasker_InvalidDb::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2087:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2087 | auto_ptr query( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::BlastnWithWindowMasker_InvalidTaxid::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2104:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2104 | auto_ptr query( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::BlastnWithWindowMasker_DbAndTaxid::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2132:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2132 | auto_ptr query( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::Alex::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2158:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2158 | auto_ptr query( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2163:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2163 | auto_ptr subj( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::NucleotideBlast2Seqs::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2178:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2178 | auto_ptr query( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2182:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2182 | auto_ptr subj( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::ProteinBlastChangeQuery::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2197:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2197 | auto_ptr query(CTestObjMgr::Instance().CreateSSeqLoc(id)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2200:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2200 | auto_ptr subj(CTestObjMgr::Instance().CreateSSeqLoc(id)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::ProteinBlastChangeSubject::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2217:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2217 | auto_ptr query(CTestObjMgr::Instance().CreateSSeqLoc(qid)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2220:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2220 | auto_ptr subj(CTestObjMgr::Instance().CreateSSeqLoc(sid)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::NucleotideBlastChangeQuery::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2238:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2238 | auto_ptr query( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2242:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2242 | auto_ptr subj( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::NucleotideBlastChangeSubject::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2263:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2263 | auto_ptr query( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2267:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2267 | auto_ptr subj( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::ProteinBlastMultipleQueries::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2290:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2290 | auto_ptr sl1(CTestObjMgr::Instance().CreateSSeqLoc(qid)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2294:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2294 | auto_ptr sl2(CTestObjMgr::Instance().CreateSSeqLoc(sid)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:53: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::NucleotideBlastMultipleQueries::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2344:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2344 | auto_ptr sl1( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2350:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2350 | auto_ptr sl2( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::TblastnOutOfFrame::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2469:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2469 | auto_ptr query(CTestObjMgr::Instance().CreateSSeqLoc(qid)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2470:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2470 | auto_ptr subj(CTestObjMgr::Instance().CreateSSeqLoc(sid)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::TblastnOutOfFrame2::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2494:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2494 | auto_ptr query(CTestObjMgr::Instance().CreateSSeqLoc(qid)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2495:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2495 | auto_ptr subj(CTestObjMgr::Instance().CreateSSeqLoc(sid)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In function 'std::string* blastinput::s_FileContents2String(const char*)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:1669:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1669 | auto_ptr retval(new string); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'void blastinput::ReadAccessionNucleotideIntoBuffer_Single::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:1681:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1681 | auto_ptr user_input(s_FileContents2String(fname)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::BlastxOutOfFrame::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2526:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2526 | auto_ptr query( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2528:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2528 | auto_ptr subj(CTestObjMgr::Instance().CreateSSeqLoc(sid)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'void blastinput::ReadGiNuclWithFlankingSpacesIntoBuffer_Single::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:1735:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1735 | auto_ptr user_input(new string(" 1945386 \n ")); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::BlastxOutOfFrame_DifferentFrames::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2552:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2552 | auto_ptr query( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2554:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2554 | auto_ptr subj(CTestObjMgr::Instance().CreateSSeqLoc(sid)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'void blastinput::ReadAccessionNuclWithFlankingSpacesIntoBuffer_Single::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:1808:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1808 | auto_ptr user_input(new string(" X65215.1 ")); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'void blastinput::ReadFastaWithDeflineProteinIntoBuffer_Single::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:1882:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1882 | auto_ptr user_input(s_FileContents2String(fname)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::Blastn_QueryBothStrands_SubjBothStrands::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2710:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2710 | auto_ptr query( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2717:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2717 | auto_ptr subj( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::Blastn_QueryBothStrands_SubjPlusStrand::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2733:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2733 | auto_ptr query( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2740:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2740 | auto_ptr subj( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::Blastn_QueryBothStrands_SubjMinusStrand::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2756:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2756 | auto_ptr query( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2763:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2763 | auto_ptr subj( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::Blastn_QueryPlusStrand_SubjPlusStrand::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2779:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2779 | auto_ptr query( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2786:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2786 | auto_ptr subj( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::Blastn_QueryPlusStrand_SubjMinusStrand::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2802:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2802 | auto_ptr query( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2809:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2809 | auto_ptr subj( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::Blastn_QueryPlusStrand_SubjBothStrands::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2826:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2826 | auto_ptr query( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2833:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2833 | auto_ptr subj( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::Blastn_QueryMinusStrand_SubjMinusStrand::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2849:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2849 | auto_ptr query( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2856:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2856 | auto_ptr subj( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::Blastn_QueryMinusStrand_SubjPlusStrand::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2872:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2872 | auto_ptr query( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2879:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2879 | auto_ptr subj( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::Blastn_QueryMinusStrand_SubjBothStrands::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2895:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2895 | auto_ptr query( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2902:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2902 | auto_ptr subj( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::Blastn_QueryWhole_SubjInterval::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2917:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2917 | auto_ptr query(CTestObjMgr::Instance().CreateWholeSSeqLoc(*qid)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2921:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2921 | auto_ptr subj( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::Blastn_QueryInterval_SubjWhole::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2936:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2936 | auto_ptr query( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2941:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2941 | auto_ptr subj(CTestObjMgr::Instance().CreateWholeSSeqLoc(*sid)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::BlastOptionsEquality::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:3231:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3231 | auto_ptr megablast_options_handle( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::BlastOptionsInequality::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:3245:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3245 | auto_ptr blastn_options_handle( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::DiscontiguousMB::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:3260:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3260 | auto_ptr query( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:3262:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3262 | auto_ptr subj(CTestObjMgr::Instance().CreateSSeqLoc(sid)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::BlastnHumanChrom_MRNA::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:3279:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3279 | auto_ptr query( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:3282:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3282 | auto_ptr subj( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::testOneSubjectResults2CSeqAlign::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:3307:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3307 | auto_ptr sl( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::testMultiSeqSearchSymmetry::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:3346:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3346 | auto_ptr sl( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::testInterruptCallbackWithNull::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:3514:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3514 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(id)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::testInterruptCallbackDoNotInterrupt::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:3542:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3542 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(id)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::QueryMaskIgnoredInMiniExtension::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:3602:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3602 | auto_ptr query(new SSeqLoc(qloc, scope)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:3603:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3603 | auto_ptr subject( - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'ncbi::CArgs* blastargs::CString2Args::CreateCArgs(ncbi::blast::CBlastAppArgs&) const': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:3227:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3227 | auto_ptr arg_desc(args.SetCommandLine()); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'void blastargs::PsiBlastAppTestMatrix::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:3289:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3289 | auto_ptr args(s2a.CreateCArgs(psiblast_args)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'void blastargs::RpsBlastCBS::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:3300:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3300 | auto_ptr args(s2a.CreateCArgs(rpsblast_args)); - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'void blastargs::CheckMutuallyExclusiveOptions::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:3320:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3320 | auto_ptr args; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'void blastargs::CheckDiscoMegablast::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:3327:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3327 | auto_ptr args; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'void blastargs::CheckPercentIdentity::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:3351:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3351 | auto_ptr args; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'void blastargs::CheckNoGreedyExtension::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:3365:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3365 | auto_ptr args; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 414 | auto_ptr m_SamFormatter; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'void blastargs::CheckCulling::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:3387:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3387 | auto_ptr args; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'void blastargs::CheckQueryCoveragePercent::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:3415:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3415 | auto_ptr args; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'void blastargs::CheckMaxHspsPerSubject::test_method()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:3429:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3429 | auto_ptr args; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_async_format.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blast_format_unit_test.cpp:55: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/build_archive.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blast_format_unit_test.cpp:58: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_blast.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_app.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_blast.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_node.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_app.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_node.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_node.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_app.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blastn_args.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_app.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 449 | auto_ptr m_ConfigFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 450 | auto_ptr m_Reg; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 449 | auto_ptr m_ConfigFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 450 | auto_ptr m_Reg; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=blast_report /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_report.cpp -o blast_report.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blast_report.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o blast_report -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_report /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f blast_report /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blast_report -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -cd app/blast/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=blastp LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast TMPL=blastp -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:53: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_app.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_app.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_report.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -65463,6 +62775,93 @@ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) @@ -65501,7 +62900,119 @@ 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_node.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastx_app.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/seedtop_app.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_node.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -65515,6 +63026,16 @@ 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' @@ -65536,6 +63057,9 @@ 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_infIMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -65576,8 +63100,50 @@ | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | o = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME _ ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' @@ -65610,41 +63176,56 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_app.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ +_DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUIL/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_D_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 414 | auto_ptr m_SamFormatter; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_node.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -65657,45 +63238,116 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I../ -DNCBI_APP_BUILT_AS=bdbloader_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp -o bdbloader_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie bdbloader_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o bdbloader_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f bdbloader_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f bdbloader_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/bdbloader_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' -cd app/blast/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=blastx LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast TMPL=blastx -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 414 | auto_ptr m_SamFormatter; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=magicblast_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/magicblast_unit_test.cpp -o magicblast_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie magicblast_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o magicblast_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f magicblast_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f magicblast_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/magicblast_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd app/blast/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=deltablast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_app.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_app.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -65703,6 +63355,28 @@ 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) | ^~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' @@ -65711,6 +63385,15 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_inf, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ @@ -65767,11 +63450,71 @@ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~o = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducib~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: le-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info =in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME _ ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' @@ -65783,6 +63526,20 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +_DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^~~~~~~~~~~~~~~~~~~~~~~ @@ -65805,7 +63562,7 @@ 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_node.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/deltablast_app.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -65914,45 +63671,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_app.cpp: In member function 'int CBlastnApp::x_RunMTBySplitQuery()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:197:8: warning: this 'if' clause does not guard... [-Wmisleading-indentation] - 197 | do if (NCBI_NS_NCBI::IsVisibleDiagPostLevel(NCBI_NS_NCBI::eDiag_##severity)) \ - | ^~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro 'SEVERITY_POST' - 200 | #define INFO_POST(message) SEVERITY_POST(Info, message) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_app.cpp:320:17: note: in expansion of macro 'INFO_POST' - 320 | INFO_POST("Batch Size: " << batch_size); - | ^~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:198:44: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' - 198 | ERR_POST(severity << message); while(0) - | ^~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro 'SEVERITY_POST' - 200 | #define INFO_POST(message) SEVERITY_POST(Info, message) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_app.cpp:320:17: note: in expansion of macro 'INFO_POST' - 320 | INFO_POST("Batch Size: " << batch_size); - | ^~~~~~~~~ -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast TMPL=deltablast -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_node.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_unit_test.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -65965,11 +63689,102 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/deltablast_app.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp:47: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -66078,13 +63893,21 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:51: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_app.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blast_format_unit_test.cpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -66097,16 +63920,12 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/deltablast_app.cpp:45: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -66119,29 +63938,189 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=delta_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/delta_unit_test.cpp -o delta_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie delta_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lseqalign_util -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o delta_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f delta_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f delta_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/delta_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd app/blast/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=psiblast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast TMPL=psiblast -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/psiblast_app.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp:51: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -66250,6 +64229,24 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, @@ -66272,26 +64269,9 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=blast_formatter /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_formatter.cpp -o blast_formatter.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blast_formatter.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o blast_formatter -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_formatter /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f blast_formatter /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blast_formatter -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -cd app/blast/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=rpsblast LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast TMPL=rpsblast -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_app.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:55: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -66400,8 +64380,53 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_node.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastn_node.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ + ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_node.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp:53: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -66513,6 +64538,28 @@ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_formatter.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_app.cpp:41: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); @@ -66554,6 +64601,412 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/seedtop_app.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_node.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastn_app.cpp:42: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_node.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_app.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_app.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_node.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/deltablast_app.cpp:45: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_app.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_report.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_app.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blast_input_unit_test_aux.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:64: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastx_app.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:38: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:35: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, @@ -66561,7 +65014,421 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_blast.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_app.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_node.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp:35: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:35: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blast_format_unit_test.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbictype.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistre.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_stack.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blast_format_unit_test.cpp:35: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_blast.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_node.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_blast.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_app.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:45: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/psiblast_app.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_report.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_blast.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_node.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_blast.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_app.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/annot_types_ci.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/feat_ci.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:50, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_blast.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_node.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_seqinfosrc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/seqinfosrc_seqdb.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialbase.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_loc_.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objects/seqloc/Seq_loc.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp:35: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_formatter.cpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -66589,6 +65456,28 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_node.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/deltablast.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/deltablast_app.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/deltablast_app.cpp:35: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, @@ -66631,7 +65520,327 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_blast.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_node.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastn_app.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_blast.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_app.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_blast.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_app.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_blast.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_app.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_blast.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastx_app.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/magicblast.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/magicblast_unit_test.cpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/psiblast_app.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_blast.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastn_node.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/seedtop.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/seedtop_app.cpp:36: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp:40: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -66647,6 +65856,52 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/psiblast.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ @@ -66659,26 +65914,67 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_app.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastx_app.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../core -DNCBI_APP_BUILT_AS=redoalignment_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp -o redoalignment_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie redoalignment_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o redoalignment_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f redoalignment_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f redoalignment_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/redoalignment_unit_test +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blast_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_unit_test.cpp -o blast_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blast_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -llmdb -lpthread -lm -lpthread -o blast_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f blast_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blast_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_node.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd app/blast/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=rpstblastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast TMPL=rpstblastn -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +cd app/blastdb/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=blastdb_aliastool LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb TMPL=blastdb_aliastool -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_node.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/delta_unit_test.cpp:47: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_app.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_app.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_aliastool.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -66787,8 +66083,478 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_app.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_app.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastn_app.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_aliastool.cpp:46: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/seq_loc_util.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_aliastool.cpp:47: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:45: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:50: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_aliastool.cpp: In member function 'virtual void CBlastDBAliasApp::Init()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_aliastool.cpp:150:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 150 | auto_ptr arg_desc(new CArgDescriptions); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_formatter.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/deltablast_app.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_app.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_node.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastx_app.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/tblastx_args.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastx_app.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_app.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp:43: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_report.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 449 | auto_ptr m_ConfigFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 450 | auto_ptr m_Reg; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_app.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastdb_aliastool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_aliastool.cpp -o blastdb_aliastool.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blastdb_aliastool.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lwritedb -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o blastdb_aliastool +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_aliastool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f blastdb_aliastool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastdb_aliastool +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +cd app/blastdb/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=blastdb_convert LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I../ -DNCBI_APP_BUILT_AS=bdbloader_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blastdb/bdbloader_unit_test.cpp -o bdbloader_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie bdbloader_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o bdbloader_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f bdbloader_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f bdbloader_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/bdbloader_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb TMPL=blastdb_convert -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=magicblast_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/magicblast_unit_test.cpp -o magicblast_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie magicblast_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o magicblast_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f magicblast_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f magicblast_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/magicblast_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_node.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_convert.cpp:35: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -66897,13 +66663,35 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_app.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' +cd app/blastdb/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=blastdb_path LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb TMPL=blastdb_path -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 414 | auto_ptr m_SamFormatter; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_path.cpp:35: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -66916,30 +66704,123 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_node.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_node.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_node.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ +cd app/blastdb/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=blastdbcheck LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb TMPL=blastdbcheck -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcheck.cpp:34: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -66952,30 +66833,203 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_app.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 449 | auto_ptr m_ConfigFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 450 | auto_ptr m_Reg; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blast_format_unit_test.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastn_node.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 743 | auto_ptr m_ObjectStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_node.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 414 | auto_ptr m_SamFormatter; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_app.cpp: In member function 'int CRPSBlastApp::x_RunMTBySplitQuery()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:197:8: warning: this 'if' clause does not guard... [-Wmisleading-indentation] + 197 | do if (NCBI_NS_NCBI::IsVisibleDiagPostLevel(NCBI_NS_NCBI::eDiag_##severity)) \ + | ^~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro 'SEVERITY_POST' + 200 | #define INFO_POST(message) SEVERITY_POST(Info, message) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_app.cpp:258:9: note: in expansion of macro 'INFO_POST' + 258 | INFO_POST("Batch Size: " << batch_size); + | ^~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:198:44: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' + 198 | ERR_POST(severity << message); while(0) + | ^~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro 'SEVERITY_POST' + 200 | #define INFO_POST(message) SEVERITY_POST(Info, message) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_app.cpp:258:9: note: in expansion of macro 'INFO_POST' + 258 | INFO_POST("Batch Size: " << batch_size); + | ^~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_convert.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_node.cpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ @@ -66984,16 +67038,21 @@ | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/deltablast.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/deltablast_app.cpp:37: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_path.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/deltablast_app.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -67009,14 +67068,19 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_blast.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_app.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcheck.cpp:44: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -67044,87 +67108,77 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blast_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp -o seqalignfilter_unit_test.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blast_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp -o blastfmtutil_unit_test.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blast_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp -o build_archive_unit_test.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blast_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp -o vecscreen_run_unit_test.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blast_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blast_format_unit_test.cpp -o blast_format_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_path.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_app.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_convert.cpp:49: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:45: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcheck.cpp:46: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ @@ -67149,294 +67203,236 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:45: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1554 | static auto_ptr m_GeneInfoReader; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 449 | auto_ptr m_ConfigFile; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:50: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 450 | auto_ptr m_Reg; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blastp_args.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_app.cpp:39: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcheck.cpp:47: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:50: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_blast.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_app.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_options.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/psiblast_app.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 449 | auto_ptr m_ConfigFile; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 450 | auto_ptr m_Reg; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=psiblast_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp -o psiblast_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie psiblast_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lseqalign_util -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o psiblast_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f psiblast_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/psiblast_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -cd app/blast/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=seedtop LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_path.cpp: In member function 'virtual void CBlastDBCmdApp::Init()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_path.cpp:73:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 73 | auto_ptr arg_desc(new CArgDescriptions); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_convert.cpp: In member function 'virtual void CBlastdbConvertApp::Init()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_convert.cpp:119:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 119 | auto_ptr arg_desc(new CArgDescriptions); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/deltablast_app.cpp:39: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:45: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 743 | auto_ptr m_ObjectStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_blast.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_node.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:50: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcheck.cpp: In member function 'virtual void CBlastDbCheckApplication::Init()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcheck.cpp:147:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 147 | auto_ptr arg_desc(new CArgDescriptions); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp:42: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast TMPL=seedtop -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_app.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp:44: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:53: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/vecscreen_run.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp:48: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie seqalignfilter_unit_test.o blastfmtutil_unit_test.o build_archive_unit_test.o vecscreen_run_unit_test.o blast_format_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o blast_format_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f blast_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blast_format_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' -cd app/blast/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=tblastn LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastdb_path /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_path.cpp -o blastdb_path.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blastdb_path.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o blastdb_path +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_path /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f blastdb_path /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastdb_path +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +cd app/blastdb/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=blastdbcmd LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb TMPL=blastdbcmd -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/seedtop_app.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcmd.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -67546,62 +67542,28 @@ 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=tblastx /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastx_app.cpp -o tblastx_app.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie tblastx_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o tblastx +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastx /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f tblastx /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/tblastx make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast TMPL=tblastn -w -j11 --jobserver-auth=7,8 all -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_app.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:53: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 449 | auto_ptr m_ConfigFile; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 450 | auto_ptr m_Reg; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 414 | auto_ptr m_SamFormatter; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/seedtop_app.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +cd app/blastdb/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=blastdbcp LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb TMPL=blastdbcp -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcp.cpp:31: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ | ^~~~~~~~ @@ -67614,17 +67576,119 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] + 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' + 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) + | ^~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' + 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' + 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' + 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); + | ^~~~~~~~~~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastdb_convert /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_convert.cpp -o blastdb_convert.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blastdb_convert.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lwritedb -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o blastdb_convert +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_convert /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f blastdb_convert /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastdb_convert +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +cd app/blastdb/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=makeblastdb LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb TMPL=makeblastdb -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastn_app.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeblastdb.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -67733,18 +67797,103 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/psiblast_app.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_node.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcmd.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastdbcheck /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcheck.cpp -o blastdbcheck.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blastdbcheck.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o blastdbcheck +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcheck /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f blastdbcheck /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastdbcheck +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +cd app/blastdb/ && /usr/bin/make -w -j21 --jobserver-auth=5,6 APP_PROJ=makeprofiledb LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null +make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcp.cpp:32: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb TMPL=makeprofiledb -w -j21 --jobserver-auth=7,8 all +make[5]: warning: -j21 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastn_node.cpp:35: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeprofiledb.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) | ^ @@ -67853,192 +68002,496 @@ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 414 | auto_ptr m_SamFormatter; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcmd.cpp:42: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeblastdb.cpp:37: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version_api.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/version.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeblastdb.cpp:36: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/build_db.hpp:44, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/masked_range_set.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/masked_range_set.cpp:31: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/build_db.hpp:37: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcmd.cpp:47: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/build_db.hpp:45: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcp.cpp: In member function 'virtual void BlastdbCopyApplication::Init()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcp.cpp:107:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 107 | auto_ptr arg_desc(new CArgDescriptions); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:45: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeblastdb.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/data_loader.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/blastdb/bdbloader.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/blast_test_util.hpp:56, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/delta_unit_test.cpp:66: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:50: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcmd.cpp: In member function 'virtual void CBlastDBCmdApp::Init()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcmd.cpp:863:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 863 | auto_ptr arg_desc(new CArgDescriptions); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeblastdb.cpp:42: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeblastdb.cpp:59: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:45: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:50: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeprofiledb.cpp:43: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 515 | auto_ptr m_MappingCollector; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 523 | auto_ptr m_AnnotLocsSet; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 528 | mutable auto_ptr m_AnnotNames; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastn_app.cpp:42: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/deltablast_app.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeblastdb.cpp: In member function 'virtual void CMakeBlastDBApp::Init()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeblastdb.cpp:210:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 210 | auto_ptr arg_desc(new CArgDescriptions); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_app.cpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastn_node.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeprofiledb.cpp:63: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_app.cpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/seedtop_app.cpp:37: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 414 | auto_ptr m_SamFormatter; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_node.cpp:37: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:45: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 743 | auto_ptr m_ObjectStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:50: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_app.cpp: In member function 'int CBlastpApp::x_RunMTBySplitQuery()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:197:8: warning: this 'if' clause does not guard... [-Wmisleading-indentation] - 197 | do if (NCBI_NS_NCBI::IsVisibleDiagPostLevel(NCBI_NS_NCBI::eDiag_##severity)) \ - | ^~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro 'SEVERITY_POST' - 200 | #define INFO_POST(message) SEVERITY_POST(Info, message) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_app.cpp:275:17: note: in expansion of macro 'INFO_POST' - 275 | INFO_POST("Batch Size: " << batch_size); - | ^~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:198:44: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' - 198 | ERR_POST(severity << message); while(0) - | ^~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro 'SEVERITY_POST' - 200 | #define INFO_POST(message) SEVERITY_POST(Info, message) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_app.cpp:275:17: note: in expansion of macro 'INFO_POST' - 275 | INFO_POST("Batch Size: " << batch_size); - | ^~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_app.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeprofiledb.cpp: In member function 'void CMakeProfileDBApp::x_SetupArgDescriptions()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeprofiledb.cpp:383:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 383 | auto_ptr arg_desc(new CArgDescriptions); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeprofiledb.cpp: In member function 'void CMakeProfileDBApp::x_InitRPSDbInfo(CRPS_DbInfo&, Int4, Int4)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeprofiledb.cpp:758:6: warning: this 'if' clause does not guard... [-Wmisleading-indentation] + 758 | if (!rpsDbInfo.aux_file.is_open()) + | ^~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeprofiledb.cpp:761:10: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' + 761 | string freq_str = rpsDbInfo.db_name + ".freq"; + | ^~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeprofiledb.cpp: In member function 'void CMakeProfileDBApp::x_RPSUpdateStatistics(CRPS_DbInfo&, ncbi::objects::CPssmWithParameters&, Int4)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeprofiledb.cpp:883:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 883 | auto_ptr > freq_list (CScorematPssmConverter::GetFreqRatios(seq)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeprofiledb.cpp: In member function 'void CMakeProfileDBApp::x_UpdateFreqRatios(CRPS_DbInfo&, const ncbi::objects::CPssmWithParameters&, Int4, Int4)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeprofiledb.cpp:1063:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1063 | auto_ptr > matrix (CScorematPssmConverter::GetFreqRatios(pssm_p)); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeprofiledb.cpp: In member function 'int CMakeProfileDBApp::x_Run()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeprofiledb.cpp:1382:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] + 1382 | if (m_NumOfVols == m_VolNames.size()) { + | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastdbcp /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcp.cpp -o blastdbcp.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blastdbcp.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lwritedb -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lxser -lxcgi -lxhtml -lxconnect -lxutil -lxncbi -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o blastdbcp +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcp /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f blastdbcp /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastdbcp +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastdbcmd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcmd.cpp -o blastdbcmd.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blastdbcmd.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o blastdbcmd +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcmd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f blastdbcmd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastdbcmd +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=makeprofiledb /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeprofiledb.cpp -o makeprofiledb.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie makeprofiledb.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lwritedb -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o makeprofiledb +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeprofiledb /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f makeprofiledb /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/makeprofiledb +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=makeblastdb /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeblastdb.cpp -o makeblastdb.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=makeblastdb /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/masked_range_set.cpp -o masked_range_set.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie makeblastdb.o masked_range_set.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lwritedb -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o makeblastdb +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeblastdb /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f makeblastdb /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/makeblastdb +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -DNCBI_APP_BUILT_AS=psiblast_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/psiblast_unit_test.cpp -o psiblast_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie psiblast_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lseqalign_util -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o psiblast_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f psiblast_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/psiblast_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_blast.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_node.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:48: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -68054,9 +68507,15 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/deltablast_args.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/deltablast_app.cpp:42: +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=delta_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/delta_unit_test.cpp -o delta_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie delta_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lseqalign_util -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o delta_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f delta_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f delta_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/delta_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:51: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ @@ -68067,134 +68526,168 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:52: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:54: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blastp_args.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:57: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In function 'std::string* blastinput::s_FileContents2String(const char*)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:1669:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1669 | auto_ptr retval(new string); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'void blastinput::ReadAccessionNucleotideIntoBuffer_Single::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:1681:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1681 | auto_ptr user_input(s_FileContents2String(fname)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'void blastinput::ReadGiNuclWithFlankingSpacesIntoBuffer_Single::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:1735:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1735 | auto_ptr user_input(new string(" 1945386 \n ")); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'void blastinput::ReadAccessionNuclWithFlankingSpacesIntoBuffer_Single::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:1808:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1808 | auto_ptr user_input(new string(" X65215.1 ")); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'void blastinput::ReadFastaWithDeflineProteinIntoBuffer_Single::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:1882:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1882 | auto_ptr user_input(s_FileContents2String(fname)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blastx_args.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_app.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'ncbi::CArgs* blastargs::CString2Args::CreateCArgs(ncbi::blast::CBlastAppArgs&) const': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:3227:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3227 | auto_ptr arg_desc(args.SetCommandLine()); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'void blastargs::PsiBlastAppTestMatrix::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:3289:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3289 | auto_ptr args(s2a.CreateCArgs(psiblast_args)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'void blastargs::RpsBlastCBS::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:3300:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3300 | auto_ptr args(s2a.CreateCArgs(rpsblast_args)); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'void blastargs::CheckMutuallyExclusiveOptions::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:3320:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3320 | auto_ptr args; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'void blastargs::CheckDiscoMegablast::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:3327:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3327 | auto_ptr args; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'void blastargs::CheckPercentIdentity::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:3351:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3351 | auto_ptr args; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_node.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'void blastargs::CheckNoGreedyExtension::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:3365:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3365 | auto_ptr args; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'void blastargs::CheckCulling::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:3387:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3387 | auto_ptr args; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'void blastargs::CheckQueryCoveragePercent::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:3415:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3415 | auto_ptr args; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 449 | auto_ptr m_ConfigFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp: In member function 'void blastargs::CheckMaxHspsPerSubject::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp:3429:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3429 | auto_ptr args; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 450 | auto_ptr m_Reg; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:46: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ @@ -68225,22 +68718,75 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:41: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp: In member function 'void blastfmtutil::GetAlnScoresAndGetScoreString::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:168:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 168 | auto_ptr in(CObjectIStream::Open(eSerial_AsnText, is)); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp: In member function 'void blastfmtutil::GetSubjectQueryCoverageScore::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp:201:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 201 | auto_ptr in(CObjectIStream::Open(eSerial_AsnText, is)); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_node.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/psiblast_args.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/psiblast_app.cpp:41: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_node.cpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: @@ -68268,45 +68814,42 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 449 | auto_ptr m_ConfigFile; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 450 | auto_ptr m_Reg; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 414 | auto_ptr m_SamFormatter; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_blast.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_app.cpp:36: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/bl2seq.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:36: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 515 | auto_ptr m_MappingCollector; | ^~~~~~~~ @@ -68314,11 +68857,8 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/expr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/test_boost.hpp:44: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -68334,27 +68874,49 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 449 | auto_ptr m_ConfigFile; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:49: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 450 | auto_ptr m_Reg; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/psiblast_app.cpp:42: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 414 | auto_ptr m_SamFormatter; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; @@ -68363,61 +68925,36 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:61: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_node.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:68: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 449 | auto_ptr m_ConfigFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 450 | auto_ptr m_Reg; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blast_format_unit_test.cpp:42: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_app.cpp: In member function 'int CRPSBlastApp::x_RunMTBySplitQuery()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:197:8: warning: this 'if' clause does not guard... [-Wmisleading-indentation] - 197 | do if (NCBI_NS_NCBI::IsVisibleDiagPostLevel(NCBI_NS_NCBI::eDiag_##severity)) \ - | ^~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro 'SEVERITY_POST' - 200 | #define INFO_POST(message) SEVERITY_POST(Info, message) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_app.cpp:258:9: note: in expansion of macro 'INFO_POST' - 258 | INFO_POST("Batch Size: " << batch_size); - | ^~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:198:44: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' - 198 | ERR_POST(severity << message); while(0) - | ^~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro 'SEVERITY_POST' - 200 | #define INFO_POST(message) SEVERITY_POST(Info, message) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_app.cpp:258:9: note: in expansion of macro 'INFO_POST' - 258 | INFO_POST("Batch Size: " << batch_size); - | ^~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/rpsblast_args.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_node.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; @@ -68455,462 +68992,316 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::ProteinBlastSelfHit::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:584:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 584 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(id)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::TBlastn2Seqs::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:627:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 627 | auto_ptr query(CTestObjMgr::Instance().CreateSSeqLoc(qid)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/seedtop.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/seedtop_app.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:630:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 630 | auto_ptr subj( | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::TBlastn2SeqsRevStrand1::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:666:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 666 | auto_ptr query(CTestObjMgr::Instance().CreateSSeqLoc(qid)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:670:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 670 | auto_ptr subj(CTestObjMgr::Instance().CreateSSeqLoc(sid, range, eNa_strand_minus)); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::TBlastn2SeqsRevStrand2::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:694:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 694 | auto_ptr query(CTestObjMgr::Instance().CreateSSeqLoc(qid)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:697:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 697 | auto_ptr subj(CTestObjMgr::Instance().CreateSSeqLoc(sid, eNa_strand_minus)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 449 | auto_ptr m_ConfigFile; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 450 | auto_ptr m_Reg; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::TBlastn2SeqsCompBasedStats::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:720:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 720 | auto_ptr query(CTestObjMgr::Instance().CreateSSeqLoc(qid)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:723:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 723 | auto_ptr subj( + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_node.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::TBlastn2SeqsLargeWord::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:755:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 755 | auto_ptr query(CTestObjMgr::Instance().CreateSSeqLoc(qid)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:758:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 758 | auto_ptr subj( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 449 | auto_ptr m_ConfigFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::IdenticalProteins::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:789:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 789 | auto_ptr query(CTestObjMgr::Instance().CreateSSeqLoc(qid)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 450 | auto_ptr m_Reg; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:791:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 791 | auto_ptr subj(CTestObjMgr::Instance().CreateSSeqLoc(sid)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_app.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::PositiveMismatchOption::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:835:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 835 | auto_ptr query( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_blast.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastn_app.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:837:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 837 | auto_ptr subj(CTestObjMgr::Instance().CreateSSeqLoc(sid)); | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::FullyMaskedSequence::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:860:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 860 | auto_ptr query( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:866:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 866 | auto_ptr subj( + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/seedtop_app.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::MultipleQueries1FullyMasked::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:900:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 900 | auto_ptr envvar1, envvar2; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:53: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 414 | auto_ptr m_SamFormatter; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::testInterruptBlastpExitImmediately::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:938:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 938 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(id)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 414 | auto_ptr m_SamFormatter; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_app.cpp: In member function 'int CBlastxApp::x_RunMTBySplitQuery()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:197:8: warning: this 'if' clause does not guard... [-Wmisleading-indentation] - 197 | do if (NCBI_NS_NCBI::IsVisibleDiagPostLevel(NCBI_NS_NCBI::eDiag_##severity)) \ - | ^~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro 'SEVERITY_POST' - 200 | #define INFO_POST(message) SEVERITY_POST(Info, message) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_app.cpp:274:17: note: in expansion of macro 'INFO_POST' - 274 | INFO_POST("Batch Size: " << batch_size); - | ^~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:198:44: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' - 198 | ERR_POST(severity << message); while(0) - | ^~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro 'SEVERITY_POST' - 200 | #define INFO_POST(message) SEVERITY_POST(Info, message) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_app.cpp:274:17: note: in expansion of macro 'INFO_POST' - 274 | INFO_POST("Batch Size: " << batch_size); - | ^~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 449 | auto_ptr m_ConfigFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 450 | auto_ptr m_Reg; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::Tblastn2Seqs_PlusStrandOnly::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:957:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 957 | auto_ptr ql(CTestObjMgr::Instance().CreateSSeqLoc(qid)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_node.cpp -o blastn_node.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_app.cpp -o blastn_app.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blastn_node.o blastn_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_app_util -lxformat -lxcleanup -lvalid -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lsubmit -lxregexp -lregexp -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o blastn -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f blastn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastn -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -cd app/blast/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=tblastx LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:963:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 963 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(sid, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::testInterruptBlastSetup::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:998:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 998 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(id)); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::testInterruptBlastnExitImmediately::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1014:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1014 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(id)); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::testInterruptBlastxExitImmediately::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1030:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1030 | auto_ptr slq(CTestObjMgr::Instance().CreateSSeqLoc(query_id)); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1032:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1032 | auto_ptr sls(CTestObjMgr::Instance().CreateSSeqLoc(subj_id)); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::testInterruptTblastxExitImmediately::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1048:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1048 | auto_ptr slq(CTestObjMgr::Instance().CreateSSeqLoc(query_id)); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1050:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1050 | auto_ptr sls(CTestObjMgr::Instance().CreateSSeqLoc(subj_id)); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::testInterruptTblastnExitImmediately::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1066:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1066 | auto_ptr slq(CTestObjMgr::Instance().CreateSSeqLoc(query_id)); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1068:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1068 | auto_ptr sls(CTestObjMgr::Instance().CreateSSeqLoc(subj_id)); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast TMPL=tblastx -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_app.cpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastn_node.cpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastx_app.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/rpstblastn_args.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_node.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 414 | auto_ptr m_SamFormatter; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::testInterruptBlastpExitAfter3Callbacks::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1276:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1276 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(id)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_app.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_blast.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastn_node.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=rpsblast /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_node.cpp -o rpsblast_node.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=rpsblast /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_app.cpp -o rpsblast_app.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie rpsblast_node.o rpsblast_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o rpsblast +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpsblast /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f rpsblast /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/rpsblast +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_async_format.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blast_format_unit_test.cpp:55: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::NucleotideBlastMultipleQueriesWithInvalidSeqId::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1426:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1426 | auto_ptr sl1(CTestObjMgr::Instance().CreateSSeqLoc(*id1)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1428:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1428 | auto_ptr sl2(CTestObjMgr::Instance().CreateSSeqLoc(*id2)); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1446:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1446 | auto_ptr sl_bad(new SSeqLoc(*fake_loc, *scope)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgictx.hpp:36, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:49, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastx_app.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:76: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/cgi/cgiapp.hpp:68:52: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 68 | CCgiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastn_app.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1458:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1458 | auto_ptr subj_loc | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; @@ -68926,6 +69317,14 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/build_archive.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blast_format_unit_test.cpp:58: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: @@ -68953,6 +69352,19 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, @@ -68964,65 +69376,75 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::ProteinCompBasedStats::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1620:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1620 | auto_ptr ss2(CTestObjMgr::Instance().CreateSSeqLoc(id)); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 414 | auto_ptr m_SamFormatter; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 449 | auto_ptr m_ConfigFile; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastn_app.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 450 | auto_ptr m_Reg; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::Blastx2Seqs_QueryBothStrands::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1640:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1640 | auto_ptr query( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/rpstblastn_args.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_app.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1645:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1645 | auto_ptr subj(CTestObjMgr::Instance().CreateSSeqLoc(sid)); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::NucleotideSelfHitWithSubjectMask::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1672:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1672 | auto_ptr subject(new SSeqLoc(ssl, scope, subj_mask)); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::NucleotideBlastSelfHit::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1690:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1690 | auto_ptr sl( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blastp_args.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/seedtop_app.cpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/rpstblastn_args.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_app.cpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::MegablastGreedyTraceback::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1724:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1724 | auto_ptr ql( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1729:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1729 | auto_ptr sl( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ @@ -69041,8 +69463,28 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::MegablastGreedyTracebackSelfHits::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1844:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1844 | auto_ptr ql( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1849:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1849 | auto_ptr sl( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::Blastx2Seqs_QueryPlusStrand::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1878:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1878 | auto_ptr query( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1882:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1882 | auto_ptr subj(CTestObjMgr::Instance().CreateSSeqLoc(sid)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; @@ -69074,81 +69516,101 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::Blastx2Seqs_QueryMinusStrand::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1892:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1892 | auto_ptr query( + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 62 | typedef auto_ptr TObjectType; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1896:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1896 | auto_ptr subj(CTestObjMgr::Instance().CreateSSeqLoc(sid)); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:53: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::TBlastx2Seqs_QueryBothStrands::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1907:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1907 | auto_ptr sl( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::TBlastx2Seqs_QueryPlusStrand::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1920:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1920 | auto_ptr sl( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::TBlastx2Seqs_QueryMinusStrand::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1931:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1931 | auto_ptr sl( + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 414 | auto_ptr m_SamFormatter; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/tblastn_args.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastn_app.cpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::TblastxManyHits::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1949:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1949 | auto_ptr qsl( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastn_node.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1953:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1953 | auto_ptr ssl( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::ProteinBlast2Seqs::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1986:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1986 | auto_ptr query(CTestObjMgr::Instance().CreateSSeqLoc(id)); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:1989:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1989 | auto_ptr subj(CTestObjMgr::Instance().CreateSSeqLoc(id)); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::BlastnWithRepeatFiltering_InvalidDB::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2001:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2001 | auto_ptr query( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; @@ -69160,84 +69622,99 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::BlastnWithRepeatFiltering::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2022:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2022 | auto_ptr query( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_node.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::BlastnWithWindowMasker_Db::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2052:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2052 | auto_ptr query( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 449 | auto_ptr m_ConfigFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 414 | auto_ptr m_SamFormatter; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 450 | auto_ptr m_Reg; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::BlastnWithWindowMasker_Taxid::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2072:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2072 | auto_ptr query( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::BlastnWithWindowMasker_InvalidDb::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2087:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2087 | auto_ptr query( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::BlastnWithWindowMasker_InvalidTaxid::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2104:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2104 | auto_ptr query( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::BlastnWithWindowMasker_DbAndTaxid::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2132:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2132 | auto_ptr query( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::Alex::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2158:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2158 | auto_ptr query( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2163:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2163 | auto_ptr subj( + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 449 | auto_ptr m_ConfigFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::NucleotideBlast2Seqs::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2178:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2178 | auto_ptr query( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 450 | auto_ptr m_Reg; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2182:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2182 | auto_ptr subj( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::ProteinBlastChangeQuery::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2197:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2197 | auto_ptr query(CTestObjMgr::Instance().CreateSSeqLoc(id)); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2200:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2200 | auto_ptr subj(CTestObjMgr::Instance().CreateSSeqLoc(id)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; @@ -69254,24 +69731,54 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 449 | auto_ptr m_ConfigFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::ProteinBlastChangeSubject::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2217:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2217 | auto_ptr query(CTestObjMgr::Instance().CreateSSeqLoc(qid)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 450 | auto_ptr m_Reg; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2220:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2220 | auto_ptr subj(CTestObjMgr::Instance().CreateSSeqLoc(sid)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastn_node.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::NucleotideBlastChangeQuery::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2238:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2238 | auto_ptr query( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2242:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2242 | auto_ptr subj( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::NucleotideBlastChangeSubject::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2263:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2263 | auto_ptr query( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2267:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2267 | auto_ptr subj( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::ProteinBlastMultipleQueries::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2290:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2290 | auto_ptr sl1(CTestObjMgr::Instance().CreateSSeqLoc(qid)); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2294:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2294 | auto_ptr sl2(CTestObjMgr::Instance().CreateSSeqLoc(sid)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; @@ -69287,8 +69794,94 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 414 | auto_ptr m_SamFormatter; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::NucleotideBlastMultipleQueries::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2344:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2344 | auto_ptr sl1( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2350:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2350 | auto_ptr sl2( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::TblastnOutOfFrame::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2469:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2469 | auto_ptr query(CTestObjMgr::Instance().CreateSSeqLoc(qid)); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2470:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2470 | auto_ptr subj(CTestObjMgr::Instance().CreateSSeqLoc(sid)); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::TblastnOutOfFrame2::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2494:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2494 | auto_ptr query(CTestObjMgr::Instance().CreateSSeqLoc(qid)); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2495:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2495 | auto_ptr subj(CTestObjMgr::Instance().CreateSSeqLoc(sid)); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/rpstblastn_args.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_node.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::BlastxOutOfFrame::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2526:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2526 | auto_ptr query( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2528:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2528 | auto_ptr subj(CTestObjMgr::Instance().CreateSSeqLoc(sid)); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::BlastxOutOfFrame_DifferentFrames::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2552:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2552 | auto_ptr query( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2554:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2554 | auto_ptr subj(CTestObjMgr::Instance().CreateSSeqLoc(sid)); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; @@ -69320,36 +69913,18 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/tempstr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_app.cpp: In member function 'int CRPSTBlastnApp::x_RunMTBySplitQuery()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:197:8: warning: this 'if' clause does not guard... [-Wmisleading-indentation] - 197 | do if (NCBI_NS_NCBI::IsVisibleDiagPostLevel(NCBI_NS_NCBI::eDiag_##severity)) \ - | ^~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro 'SEVERITY_POST' - 200 | #define INFO_POST(message) SEVERITY_POST(Info, message) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_app.cpp:251:9: note: in expansion of macro 'INFO_POST' - 251 | INFO_POST("Batch Size: " << batch_size); - | ^~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:198:44: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' - 198 | ERR_POST(severity << message); while(0) - | ^~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro 'SEVERITY_POST' - 200 | #define INFO_POST(message) SEVERITY_POST(Info, message) - | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_app.cpp:251:9: note: in expansion of macro 'INFO_POST' - 251 | INFO_POST("Batch Size: " << batch_size); - | ^~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1554 | static auto_ptr m_GeneInfoReader; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 414 | auto_ptr m_SamFormatter; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 654 | auto_ptr m_GeneInfoReader; @@ -69357,68 +69932,146 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 414 | auto_ptr m_SamFormatter; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::Blastn_QueryBothStrands_SubjBothStrands::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2710:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2710 | auto_ptr query( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 414 | auto_ptr m_SamFormatter; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2717:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2717 | auto_ptr subj( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 414 | auto_ptr m_SamFormatter; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::Blastn_QueryBothStrands_SubjPlusStrand::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2733:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2733 | auto_ptr query( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 449 | auto_ptr m_ConfigFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2740:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2740 | auto_ptr subj( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 450 | auto_ptr m_Reg; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::Blastn_QueryBothStrands_SubjMinusStrand::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2756:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2756 | auto_ptr query( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/blast_aux.hpp:47, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/query_data.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/setup_factory.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/prelim_stage.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/local_blast.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastx_app.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2763:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2763 | auto_ptr subj( | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::Blastn_QueryPlusStrand_SubjPlusStrand::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2779:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2779 | auto_ptr query( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2786:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2786 | auto_ptr subj( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::Blastn_QueryPlusStrand_SubjMinusStrand::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2802:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2802 | auto_ptr query( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2809:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2809 | auto_ptr subj( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::Blastn_QueryPlusStrand_SubjBothStrands::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2826:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2826 | auto_ptr query( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2833:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2833 | auto_ptr subj( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::Blastn_QueryMinusStrand_SubjMinusStrand::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2849:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2849 | auto_ptr query( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2856:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2856 | auto_ptr subj( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::Blastn_QueryMinusStrand_SubjPlusStrand::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2872:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2872 | auto_ptr query( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2879:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2879 | auto_ptr subj( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::Blastn_QueryMinusStrand_SubjBothStrands::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2895:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2895 | auto_ptr query( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2902:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2902 | auto_ptr subj( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::Blastn_QueryWhole_SubjInterval::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2917:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2917 | auto_ptr query(CTestObjMgr::Instance().CreateWholeSSeqLoc(*qid)); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2921:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2921 | auto_ptr subj( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::Blastn_QueryInterval_SubjWhole::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2936:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2936 | auto_ptr query( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:2941:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2941 | auto_ptr subj(CTestObjMgr::Instance().CreateWholeSSeqLoc(*sid)); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ @@ -69427,102 +70080,162 @@ from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/tempstr.hpp:38, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastn_app.cpp: In member function 'int CTblastnApp::x_RunMTBySplitQuery()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_app.cpp: In member function 'int CRPSTBlastnApp::x_RunMTBySplitQuery()': /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:197:8: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 197 | do if (NCBI_NS_NCBI::IsVisibleDiagPostLevel(NCBI_NS_NCBI::eDiag_##severity)) \ | ^~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro 'SEVERITY_POST' 200 | #define INFO_POST(message) SEVERITY_POST(Info, message) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastn_app.cpp:332:17: note: in expansion of macro 'INFO_POST' - 332 | INFO_POST("Batch Size: " << batch_size); - | ^~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_app.cpp:251:9: note: in expansion of macro 'INFO_POST' + 251 | INFO_POST("Batch Size: " << batch_size); + | ^~~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:198:44: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 198 | ERR_POST(severity << message); while(0) | ^~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro 'SEVERITY_POST' 200 | #define INFO_POST(message) SEVERITY_POST(Info, message) | ^~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastn_app.cpp:332:17: note: in expansion of macro 'INFO_POST' - 332 | INFO_POST("Batch Size: " << batch_size); - | ^~~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/seedtop_app.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_app.cpp:251:9: note: in expansion of macro 'INFO_POST' + 251 | INFO_POST("Batch Size: " << batch_size); + | ^~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 449 | auto_ptr m_ConfigFile; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 450 | auto_ptr m_Reg; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_app_util.hpp:45, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/seedtop_app.cpp:42: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::BlastOptionsEquality::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:3231:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3231 | auto_ptr megablast_options_handle( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/seedtop_app.cpp: In member function 'virtual void CSeedTopApp::Init()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/seedtop_app.cpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr arg_desc(new CArgDescriptions); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::BlastOptionsInequality::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:3245:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3245 | auto_ptr blastn_options_handle( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastx_app.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::DiscontiguousMB::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:3260:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3260 | auto_ptr query( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:53: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:3262:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3262 | auto_ptr subj(CTestObjMgr::Instance().CreateSSeqLoc(sid)); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::BlastnHumanChrom_MRNA::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:3279:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3279 | auto_ptr query( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:3282:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3282 | auto_ptr subj( | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::testOneSubjectResults2CSeqAlign::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:3307:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3307 | auto_ptr sl( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::testMultiSeqSearchSymmetry::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:3346:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3346 | auto_ptr sl( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::testInterruptCallbackWithNull::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:3514:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3514 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(id)); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::testInterruptCallbackDoNotInterrupt::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:3542:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3542 | auto_ptr sl(CTestObjMgr::Instance().CreateSSeqLoc(id)); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp: In member function 'void bl2seq::QueryMaskIgnoredInMiniExtension::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:3602:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3602 | auto_ptr query(new SSeqLoc(qloc, scope)); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp:3603:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3603 | auto_ptr subject( + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 414 | auto_ptr m_SamFormatter; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blastinput_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp -o blastinput_unit_test.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blastinput_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp -o blast_scope_src_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blastinput_unit_test.o blast_scope_src_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lentrez2cli -lentrez2 -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o blastinput_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastinput_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f blastinput_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastinput_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastx_app.cpp:38: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastn_app.cpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 414 | auto_ptr m_SamFormatter; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:40: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=rpstblastn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_node.cpp -o rpstblastn_node.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=rpstblastn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_app.cpp -o rpstblastn_app.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie rpstblastn_node.o rpstblastn_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o rpstblastn +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpstblastn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f rpstblastn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/rpstblastn +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, @@ -69534,15 +70247,26 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/tblastx_args.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastx_app.cpp:39: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/tblastn_args.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastn_app.cpp:40: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_app.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ @@ -69561,6 +70285,19 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | auto_ptr &feat_ci, + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 869 | auto_ptr m_Gen; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: @@ -69594,6 +70331,18 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:65: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 654 | auto_ptr m_GeneInfoReader; @@ -69601,6 +70350,37 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp: In static member function 'static void CRedoAlignmentTestFixture::runRedoAlignmentCoreUnitTest(EBlastProgramType, ncbi::objects::CSeq_id&, ncbi::objects::CSeq_id&, BlastHSPList*, const BlastHSPList*, Int8, ECompoAdjustModes, bool, double, int)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:210:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 210 | auto_ptr qsl(CTestObjMgr::Instance().CreateSSeqLoc(qid)); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:211:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 211 | auto_ptr ssl(CTestObjMgr::Instance().CreateSSeqLoc(sid)); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp: In member function 'void RedoAlignment::testRedoAlignmentWithCompBasedStatsBadlyBiasedSequence::test_method()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp:636:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 636 | auto_ptr ssl(CTestObjMgr::Instance().CreateSSeqLoc(subj_id)); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 449 | auto_ptr m_ConfigFile; | ^~~~~~~~ @@ -69613,955 +70393,174 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastp /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_node.cpp -o blastp_node.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastp /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_app.cpp -o blastp_app.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blastp_node.o blastp_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o blastp -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastp /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f blastp /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastp -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -cd app/blastdb/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=blastdb_aliastool LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb TMPL=blastdb_aliastool -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 414 | auto_ptr m_SamFormatter; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/build_archive.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp:52: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=rpsblast /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_node.cpp -o rpsblast_node.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=rpsblast /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpsblast_app.cpp -o rpsblast_app.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie rpsblast_node.o rpsblast_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o rpsblast -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpsblast /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f rpsblast /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/rpsblast -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -cd app/blastdb/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=blastdb_convert LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb TMPL=blastdb_convert -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_aliastool.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILIn file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_convert.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILDDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-pa_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expth/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: n~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -ote: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastx /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_node.cpp -o blastx_node.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastx /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_app.cpp -o blastx_app.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blastx_node.o blastx_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o blastx -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastx /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f blastx /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastx -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -cd app/blastdb/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=blastdb_path LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb TMPL=blastdb_path -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_path.cpp:35: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=psiblast /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/psiblast_app.cpp -o psiblast_app.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie psiblast_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o psiblast -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f psiblast /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/psiblast -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -cd app/blastdb/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=blastdbcheck LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb TMPL=blastdbcheck -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcheck.cpp:34: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=deltablast /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/deltablast_app.cpp -o deltablast_app.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie deltablast_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o deltablast -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f deltablast /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f deltablast /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/deltablast -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -cd app/blastdb/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=blastdbcmd LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb TMPL=blastdbcmd -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcmd.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=rpstblastn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_node.cpp -o rpstblastn_node.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=rpstblastn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/rpstblastn_app.cpp -o rpstblastn_app.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie rpstblastn_node.o rpstblastn_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o rpstblastn -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f rpstblastn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f rpstblastn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/rpstblastn -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -cd app/blastdb/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=blastdbcp LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb TMPL=blastdbcp -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=seedtop /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/seedtop_app.cpp -o seedtop_app.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie seedtop_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o seedtop -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f seedtop /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f seedtop /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/seedtop -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -cd app/blastdb/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=makeblastdb LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcp.cpp:31: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb TMPL=makeblastdb -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_aliastool.cpp:46: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blastp_args.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_app.cpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_node.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeblastdb.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/deltablast_app.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_app.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 414 | auto_ptr m_SamFormatter; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 449 | auto_ptr m_ConfigFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 450 | auto_ptr m_Reg; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_aliastool.cpp:47: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/deltablast_args.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/deltablast_app.cpp:42: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blastn_args.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_app.cpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ @@ -70586,144 +70585,117 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_convert.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastn_app.cpp: In member function 'int CTblastnApp::x_RunMTBySplitQuery()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:197:8: warning: this 'if' clause does not guard... [-Wmisleading-indentation] + 197 | do if (NCBI_NS_NCBI::IsVisibleDiagPostLevel(NCBI_NS_NCBI::eDiag_##severity)) \ + | ^~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro 'SEVERITY_POST' + 200 | #define INFO_POST(message) SEVERITY_POST(Info, message) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastn_app.cpp:332:17: note: in expansion of macro 'INFO_POST' + 332 | INFO_POST("Batch Size: " << batch_size); + | ^~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:198:44: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' + 198 | ERR_POST(severity << message); while(0) + | ^~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro 'SEVERITY_POST' + 200 | #define INFO_POST(message) SEVERITY_POST(Info, message) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastn_app.cpp:332:17: note: in expansion of macro 'INFO_POST' + 332 | INFO_POST("Batch Size: " << batch_size); + | ^~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcheck.cpp:44: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_path.cpp:38: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:45: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcmd.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:50: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ @@ -70754,67 +70726,124 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=tblastn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastn_node.cpp -o tblastn_node.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=tblastn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastn_app.cpp -o tblastn_app.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie tblastn_node.o tblastn_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o tblastn -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f tblastn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/tblastn -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -cd app/blastdb/ && /usr/bin/make -w -j11 --jobserver-auth=5,6 APP_PROJ=makeprofiledb LIB_PROJ="" UNIX_PROJ="" sources= configurables=configurables.null -make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 449 | auto_ptr m_ConfigFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 450 | auto_ptr m_Reg; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 449 | auto_ptr m_ConfigFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 450 | auto_ptr m_Reg; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 449 | auto_ptr m_ConfigFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 450 | auto_ptr m_Reg; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 414 | auto_ptr m_SamFormatter; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_app.cpp: In member function 'int CBlastpApp::x_RunMTBySplitQuery()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:197:8: warning: this 'if' clause does not guard... [-Wmisleading-indentation] + 197 | do if (NCBI_NS_NCBI::IsVisibleDiagPostLevel(NCBI_NS_NCBI::eDiag_##severity)) \ + | ^~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro 'SEVERITY_POST' + 200 | #define INFO_POST(message) SEVERITY_POST(Info, message) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_app.cpp:275:17: note: in expansion of macro 'INFO_POST' + 275 | INFO_POST("Batch Size: " << batch_size); + | ^~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:198:44: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' + 198 | ERR_POST(severity << message); while(0) + | ^~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro 'SEVERITY_POST' + 200 | #define INFO_POST(message) SEVERITY_POST(Info, message) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_app.cpp:275:17: note: in expansion of macro 'INFO_POST' + 275 | INFO_POST("Batch Size: " << batch_size); + | ^~~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_app.cpp:38: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:53: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.app.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb TMPL=makeprofiledb -w -j11 --jobserver-auth=7,8 all -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_path.cpp:39: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 414 | auto_ptr m_SamFormatter; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; @@ -70837,200 +70866,124 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcheck.cpp:46: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 414 | auto_ptr m_SamFormatter; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blastp_args.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/seedtop_app.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeprofiledb.cpp:36: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:142:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 142 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:82: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:158:58: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 158 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:170:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 170 | CVersion(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:69: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:177:45: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 177 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:85: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:195:61: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 195 | const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()) - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:77: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:52:26: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] - 52 | # define NCBI_BUILD_TIME __DATE__ " " __TIME__ - | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:124:55: note: in expansion of macro 'NCBI_BUILD_TIME' - 124 | #define NCBI_SBUILDINFO_DEFAULT_INSTANCE() SBuildInfo(NCBI_BUILD_TIME, NCBI_BUILD_TAG_PROXY) - | ^~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:104:5: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_INSTANCE' - 104 | NCBI_SBUILDINFO_DEFAULT_INSTANCE() \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version.hpp:117:35: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT_IMPL' - 117 | #define NCBI_SBUILDINFO_DEFAULT() NCBI_SBUILDINFO_DEFAULT_IMPL() - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:94:53: note: in expansion of macro 'NCBI_SBUILDINFO_DEFAULT' - 94 | CNcbiApplication(const SBuildInfo& build_info = NCBI_SBUILDINFO_DEFAULT()); - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcheck.cpp:47: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_app.cpp: In member function 'int CBlastnApp::x_RunMTBySplitQuery()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:197:8: warning: this 'if' clause does not guard... [-Wmisleading-indentation] + 197 | do if (NCBI_NS_NCBI::IsVisibleDiagPostLevel(NCBI_NS_NCBI::eDiag_##severity)) \ + | ^~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro 'SEVERITY_POST' + 200 | #define INFO_POST(message) SEVERITY_POST(Info, message) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_app.cpp:320:17: note: in expansion of macro 'INFO_POST' + 320 | INFO_POST("Batch Size: " << batch_size); + | ^~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:198:44: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' + 198 | ERR_POST(severity << message); while(0) + | ^~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro 'SEVERITY_POST' + 200 | #define INFO_POST(message) SEVERITY_POST(Info, message) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_app.cpp:320:17: note: in expansion of macro 'INFO_POST' + 320 | INFO_POST("Batch Size: " << batch_size); + | ^~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 414 | auto_ptr m_SamFormatter; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_aliastool.cpp: In member function 'virtual void CBlastDBAliasApp::Init()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_aliastool.cpp:150:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 150 | auto_ptr arg_desc(new CArgDescriptions); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_convert.cpp:49: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blastx_args.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_app.cpp:39: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:45: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; @@ -71047,35 +71000,27 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:54, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/blastdb_dataextract.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/blastdb_format/seq_formatter.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcmd.cpp:42: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:45: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=tblastx /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastx_app.cpp -o tblastx_app.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie tblastx_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o tblastx -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastx /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f tblastx /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/tblastx -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:50: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ @@ -71106,89 +71051,101 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | auto_ptr &feat_ci, - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_node.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:869:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 869 | auto_ptr m_Gen; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/psiblast_args.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/psiblast_app.cpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:41, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:50: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/build_db.hpp:44, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/masked_range_set.hpp:33, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/masked_range_set.cpp:31: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp: In function 'void s_LoadSeqAlignsFromFile(ncbi::objects::CSeq_align_set&, const std::string&)': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp:241:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 241 | auto_ptr asn_in(CObjectIStream::Open(fname, eSerial_AsnText)); | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/build_db.hpp:37: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:45: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcp.cpp:32: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 449 | auto_ptr m_ConfigFile; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 450 | auto_ptr m_Reg; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:37, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_node.cpp:38: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/psiblast_app.cpp:42: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 449 | auto_ptr m_ConfigFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 450 | auto_ptr m_Reg; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:50: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ @@ -71219,131 +71176,132 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcheck.cpp: In member function 'virtual void CBlastDbCheckApplication::Init()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcheck.cpp:147:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 147 | auto_ptr arg_desc(new CArgDescriptions); +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_path.cpp: In member function 'virtual void CBlastDBCmdApp::Init()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_path.cpp:73:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 73 | auto_ptr arg_desc(new CArgDescriptions); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeblastdb.cpp:37: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/version_api.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/version.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeblastdb.cpp:36: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/seqdb_writer/build_db.hpp:45: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcmd.cpp:47: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_convert.cpp: In member function 'virtual void CBlastdbConvertApp::Init()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_convert.cpp:119:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 119 | auto_ptr arg_desc(new CArgDescriptions); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40: +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 277 | auto_ptr m_PluginManager; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 65 | auto_ptr m_FileStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:45: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; - | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/serialimpl.hpp:39, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/reader_error_codes.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/mod_reader.hpp:35, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/readers/fasta.hpp:51, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_fasta_input.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/serial/impl/stltypes.hpp:62:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 62 | typedef auto_ptr TObjectType; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:50: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ @@ -71368,43 +71326,125 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 414 | auto_ptr m_SamFormatter; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1554 | static auto_ptr m_GeneInfoReader; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/indexer.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/create_defline.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeblastdb.cpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 449 | auto_ptr m_ConfigFile; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:41: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 450 | auto_ptr m_Reg; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 414 | auto_ptr m_SamFormatter; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 449 | auto_ptr m_ConfigFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 450 | auto_ptr m_Reg; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcp.cpp: In member function 'virtual void BlastdbCopyApplication::Init()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcp.cpp:107:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 107 | auto_ptr arg_desc(new CArgDescriptions); +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidbg.hpp:47, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbimisc.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiexpt.hpp:42, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/tempstr.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:39: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_app.cpp: In member function 'int CBlastxApp::x_RunMTBySplitQuery()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:197:8: warning: this 'if' clause does not guard... [-Wmisleading-indentation] + 197 | do if (NCBI_NS_NCBI::IsVisibleDiagPostLevel(NCBI_NS_NCBI::eDiag_##severity)) \ + | ^~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro 'SEVERITY_POST' + 200 | #define INFO_POST(message) SEVERITY_POST(Info, message) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_app.cpp:274:17: note: in expansion of macro 'INFO_POST' + 274 | INFO_POST("Batch Size: " << batch_size); + | ^~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:198:44: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' + 198 | ERR_POST(severity << message); while(0) + | ^~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbidiag.hpp:200:28: note: in expansion of macro 'SEVERITY_POST' + 200 | #define INFO_POST(message) SEVERITY_POST(Info, message) + | ^~~~~~~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_app.cpp:274:17: note: in expansion of macro 'INFO_POST' + 274 | INFO_POST("Batch Size: " << batch_size); + | ^~~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/tabular.hpp:41, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:47: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr m_memGi2GeneFile; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcmd.cpp: In member function 'virtual void CBlastDBCmdApp::Init()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcmd.cpp:863:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 863 | auto_ptr arg_desc(new CArgDescriptions); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 111 | auto_ptr m_memGene2OffsetFile; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeblastdb.cpp:42: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr m_memGi2OffsetFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 117 | auto_ptr m_memGene2GiFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 449 | auto_ptr m_ConfigFile; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 450 | auto_ptr m_Reg; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1554 | static auto_ptr m_GeneInfoReader; + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/seedtop_app.cpp:41: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/util/sequence.hpp:364:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 364 | auto_ptr &feat_ci, | ^~~~~~~~ @@ -71417,136 +71457,117 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeblastdb.cpp:59: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr m_DecompressIStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_app_util.hpp:45, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/seedtop_app.cpp:42: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 743 | auto_ptr m_ObjectStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 157 | auto_ptr m_CompressOStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/seedtop_app.cpp: In member function 'virtual void CSeedTopApp::Init()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/seedtop_app.cpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr arg_desc(new CArgDescriptions); | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:48: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 654 | auto_ptr m_GeneInfoReader; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:45: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 449 | auto_ptr m_ConfigFile; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:50: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 450 | auto_ptr m_Reg; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:449:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 449 | auto_ptr m_ConfigFile; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showdefline.hpp:450:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 450 | auto_ptr m_Reg; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:53: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/seq_feat_handle.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/scope.hpp:51, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/sseqloc.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeprofiledb.cpp:43: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:515:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 515 | auto_ptr m_MappingCollector; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistl.hpp:221, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbi_limits.hpp:61, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistr.hpp:38, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbistd.hpp:37, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbicntr.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiobj.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiargs.hpp:84, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp_api.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/corelib/ncbiapp.hpp:42: /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:53: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:523:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 523 | auto_ptr m_AnnotLocsSet; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/annot_collector.hpp:528:13: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 528 | mutable auto_ptr m_AnnotNames; - | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeblastdb.cpp: In member function 'virtual void CMakeBlastDBApp::Init()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeblastdb.cpp:210:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 210 | auto_ptr arg_desc(new CArgDescriptions); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 414 | auto_ptr m_SamFormatter; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_scope_src.hpp:42, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input.hpp:40: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/object_manager.hpp:277:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 277 | auto_ptr m_PluginManager; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 414 | auto_ptr m_SamFormatter; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastdb_path /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_path.cpp -o blastdb_path.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blastdb_path.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o blastdb_path -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_path /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f blastdb_path /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastdb_path -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:40, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeprofiledb.cpp:63: + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:53: /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 65 | auto_ptr m_FileStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_report.cpp: In member function 'virtual void CBlastReportApp::Init()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_report.cpp:107:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 107 | auto_ptr arg_desc(new CArgDescriptions); + | ^~~~~~~~ +/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here + 65 | template class auto_ptr; + | ^~~~~~~~ /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ @@ -71559,141 +71580,160 @@ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 875 | auto_ptr m_DecompressIStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 414 | auto_ptr m_SamFormatter; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:45: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/api/remote_blast.hpp:743:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 743 | auto_ptr m_ObjectStream; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:43, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:39, - from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/../blast/blast_app_util.hpp:50: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:108:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr m_memGi2GeneFile; +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:46, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:53: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_input_aux.hpp:65:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 65 | auto_ptr m_FileStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:111:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 111 | auto_ptr m_memGene2OffsetFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:156:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr m_memGi2OffsetFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:157:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 157 | auto_ptr m_CompressOStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/blast/gene_info_reader/gene_info_reader.hpp:117:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 117 | auto_ptr m_memGene2GiFile; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/blastinput/blast_args.hpp:875:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 875 | auto_ptr m_DecompressIStream; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/align_format_util.hpp:1554:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1554 | static auto_ptr m_GeneInfoReader; - | ^~~~~~~~ -/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here - 65 | template class auto_ptr; - | ^~~~~~~~ -In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blastfmtutil.hpp:41: -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/align_format/showalign.hpp:654:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 654 | auto_ptr m_GeneInfoReader; +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 414 | auto_ptr m_SamFormatter; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeprofiledb.cpp: In member function 'void CMakeProfileDBApp::x_SetupArgDescriptions()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeprofiledb.cpp:383:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 383 | auto_ptr arg_desc(new CArgDescriptions); +In file included from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_loadlock.hpp:38, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/request_result.hpp:43, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/reader.hpp:36, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/impl/reader_id2_base.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objtools/data_loaders/genbank/id2/reader_id2.hpp:33, + from /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_formatter.cpp:45: +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/objmgr/impl/tse_info.hpp:771:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 771 | auto_ptr m_BaseTSE; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeprofiledb.cpp: In member function 'void CMakeProfileDBApp::x_InitRPSDbInfo(CRPS_DbInfo&, Int4, Int4)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeprofiledb.cpp:758:6: warning: this 'if' clause does not guard... [-Wmisleading-indentation] - 758 | if (!rpsDbInfo.aux_file.is_open()) - | ^~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeprofiledb.cpp:761:10: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' - 761 | string freq_str = rpsDbInfo.db_name + ".freq"; - | ^~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeprofiledb.cpp: In member function 'void CMakeProfileDBApp::x_RPSUpdateStatistics(CRPS_DbInfo&, ncbi::objects::CPssmWithParameters&, Int4)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeprofiledb.cpp:883:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 883 | auto_ptr > freq_list (CScorematPssmConverter::GetFreqRatios(seq)); +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include/algo/blast/format/blast_format.hpp:414:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 414 | auto_ptr m_SamFormatter; | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeprofiledb.cpp: In member function 'void CMakeProfileDBApp::x_UpdateFreqRatios(CRPS_DbInfo&, const ncbi::objects::CPssmWithParameters&, Int4, Int4)': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeprofiledb.cpp:1063:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1063 | auto_ptr > matrix (CScorematPssmConverter::GetFreqRatios(pssm_p)); - | ^~~~~~~~ +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blast_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/seqalignfilter_unit_test.cpp -o seqalignfilter_unit_test.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blast_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blastfmtutil_unit_test.cpp -o blastfmtutil_unit_test.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blast_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/build_archive_unit_test.cpp -o build_archive_unit_test.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blast_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/vecscreen_run_unit_test.cpp -o vecscreen_run_unit_test.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blast_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/blast_format/blast_format_unit_test.cpp -o blast_format_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../api -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/../../core -DNCBI_APP_BUILT_AS=redoalignment_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/redoalignment_unit_test.cpp -o redoalignment_unit_test.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie redoalignment_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o redoalignment_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f redoalignment_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f redoalignment_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/redoalignment_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' +pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie seqalignfilter_unit_test.o blastfmtutil_unit_test.o build_archive_unit_test.o vecscreen_run_unit_test.o blast_format_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o blast_format_unit_test +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f blast_format_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blast_format_unit_test +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_formatter.cpp: In member function 'virtual void CBlastFormatterApp::Init()': +/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_formatter.cpp:116:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 116 | auto_ptr arg_desc(new CArgDescriptions); + | ^~~~~~~~ /usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here 65 | template class auto_ptr; | ^~~~~~~~ -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeprofiledb.cpp: In member function 'int CMakeProfileDBApp::x_Run()': -/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeprofiledb.cpp:1382:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] - 1382 | if (m_NumOfVols == m_VolNames.size()) { - | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastdb_convert /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_convert.cpp -o blastdb_convert.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blastdb_convert.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lwritedb -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o blastdb_convert -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_convert /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f blastdb_convert /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastdb_convert -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastdb_aliastool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdb_aliastool.cpp -o blastdb_aliastool.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blastdb_aliastool.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lwritedb -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o blastdb_aliastool -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdb_aliastool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f blastdb_aliastool /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastdb_aliastool -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastdbcheck /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcheck.cpp -o blastdbcheck.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blastdbcheck.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o blastdbcheck -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcheck /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f blastdbcheck /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastdbcheck -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastdbcp /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcp.cpp -o blastdbcp.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blastdbcp.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lwritedb -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -lxser -lxcgi -lxhtml -lxconnect -lxutil -lxncbi -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o blastdbcp -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcp /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f blastdbcp /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastdbcp -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastdbcmd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/blastdbcmd.cpp -o blastdbcmd.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blastdbcmd.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o blastdbcmd -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastdbcmd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f blastdbcmd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastdbcmd -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=makeprofiledb /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeprofiledb.cpp -o makeprofiledb.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie makeprofiledb.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lwritedb -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o makeprofiledb -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeprofiledb /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f makeprofiledb /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/makeprofiledb -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=makeblastdb /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/makeblastdb.cpp -o makeblastdb.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTDB -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=makeblastdb /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blastdb/masked_range_set.cpp -o masked_range_set.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie makeblastdb.o masked_range_set.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lwritedb -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o makeblastdb -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f makeblastdb /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f makeblastdb /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/makeblastdb -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=tblastn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastn_node.cpp -o tblastn_node.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=tblastn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/tblastn_app.cpp -o tblastn_app.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie tblastn_node.o tblastn_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o tblastn +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f tblastn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f tblastn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/tblastn +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=deltablast /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/deltablast_app.cpp -o deltablast_app.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie deltablast_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o deltablast +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f deltablast /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f deltablast /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/deltablast +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=seedtop /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/seedtop_app.cpp -o seedtop_app.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie seedtop_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o seedtop +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f seedtop /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f seedtop /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/seedtop +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastx /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_node.cpp -o blastx_node.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastx /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastx_app.cpp -o blastx_app.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blastx_node.o blastx_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o blastx +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastx /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f blastx /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastx +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=blast_report /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_report.cpp -o blast_report.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blast_report.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o blast_report +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_report /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f blast_report /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blast_report +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastp /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_node.cpp -o blastp_node.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastp /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastp_app.cpp -o blastp_app.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blastp_node.o blastp_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o blastp +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastp /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f blastp /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastp +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_node.cpp -o blastn_node.o +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=blastn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blastn_app.cpp -o blastn_app.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blastn_node.o blastn_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_app_util -lxformat -lxcleanup -lvalid -lgbseq -lmlacli -lmla -lmedlars -lpubmed -lsubmit -lxregexp -lregexp -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o blastn +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f blastn /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastn +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=psiblast /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/psiblast_app.cpp -o psiblast_app.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie psiblast_app.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o psiblast +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f psiblast /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f psiblast /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/psiblast +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLASTFORMAT -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -DNCBI_APP_BUILT_AS=blast_formatter /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/app/blast/blast_formatter.cpp -o blast_formatter.o +/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blast_formatter.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_app_util -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxregexp -lregexp -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lz -lbz2 -lmbedtls -lmbedx509 -lmbedcrypto -lz -lm -lpthread -o blast_formatter +/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blast_formatter /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin +/bin/ln -f blast_formatter /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blast_formatter +make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' +make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNCBI_MODULE=BLAST -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=bl2seq_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/unit_tests/api/bl2seq_unit_test.cpp -o bl2seq_unit_test.o /usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie bl2seq_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -lblast_unit_test_util -ltest_boost -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lxobjsimple -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o bl2seq_unit_test @@ -71701,14 +71741,6 @@ /bin/ln -f bl2seq_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/bl2seq_unit_test make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blastinput_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blastinput_unit_test.cpp -o blastinput_unit_test.o -/usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/ncbi-blast+-2.12.0+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIE -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/inc -I/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/include -Wno-unused-local-typedefs -DNCBI_APP_BUILT_AS=blastinput_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/algo/blast/blastinput/unit_test/blast_scope_src_unit_test.cpp -o blast_scope_src_unit_test.o -/usr/bin/g++ -std=gnu++14 -Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -gdwarf-3 -O2 -fPIE -pie blastinput_unit_test.o blast_scope_src_unit_test.o -Wl,-rpath-link,/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -L/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/lib -ltest_boost -lentrez2cli -lentrez2 -lblastinput -lncbi_xloader_blastdb_rmt -lncbi_xloader_blastdb -lxblastformat -lalign_format -ltaxon1 -lblastdb_format -lgene_info -lxformat -lxcleanup -lgbseq -lxobjedit -leutils -legquery -lelink -lepost -lesearch -lespell -lesummary -leinfo -luilist -lehistory -lxobjread -lvariation -lsubmit -lxlogging -ltaxon3 -lmlacli -lmla -lmedlars -lpubmed -lvalid -lxalnmgr -lblastxml -lblastxml2 -lxcgi -lxhtml -lproteinkmer -lxblast -lblast -lutrtprof -lxalgoblastdbindex -lcomposition_adjustment -lxalgodustmask -lxalgowinmask -lseqmasks_io -lseqdb -lblast_services -lxalnmgr -lxobjutil -lxobjread -lvariation -lsubmit -lxlogging -lxnetblastcli -lxnetblast -lblastdb -lscoremat -ltables -lncbi_xloader_genbank -lncbi_xreader_id1 -lncbi_xreader_id2 -lncbi_xreader_cache -lncbi_xreader -lxconnect -lid1 -lid2 -lxobjmgr -lgenome_collection -lseqedit -lseqsplit -lsubmit -lseqset -lseq -lseqcode -lsequtil -lpub -lmedline -lbiblio -lgeneral -lxser -lxutil -lxncbi -lxcompress -llmdb -lpthread -lmbedtls -lmbedx509 -lmbedcrypto -lz -lz -lbz2 -lm -lpthread -o blastinput_unit_test -/bin/bash /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/scripts/common/impl/if_diff.sh /bin/ln -f blastinput_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin -/bin/ln -f blastinput_unit_test /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/bin/blastinput_unit_test -make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' -make[4]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' make[3]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build' make[2]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build' make[1]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds' @@ -71720,84 +71752,84 @@ debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds' dh_auto_test - cd c\+\+ && /usr/bin/make -j11 check "TESTSUITEFLAGS=-j11 --verbose" VERBOSE=1 + cd c\+\+ && /usr/bin/make -j21 check "TESTSUITEFLAGS=-j21 --verbose" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++' if test -s ""; then \ - cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build && /usr/bin/make -w -j11 --jobserver-auth=3,4 check_p RUN_CHECK=Y; \ + cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build && /usr/bin/make -w -j21 --jobserver-auth=3,4 check_p RUN_CHECK=Y; \ else \ - cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build && /usr/bin/make -w -j11 --jobserver-auth=3,4 check_r RUN_CHECK=Y; \ + cd /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build && /usr/bin/make -w -j21 --jobserver-auth=3,4 check_r RUN_CHECK=Y; \ fi make[3]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build' -make[3]: warning: -j11 forced in submake: resetting jobserver mode. +make[3]: warning: -j21 forced in submake: resetting jobserver mode. ====================================================================== make[4]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build' -make[4]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -C corelib -w -j11 --jobserver-auth=7,8 check_add_r || exit 5 +make[4]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make -C corelib -w -j21 --jobserver-auth=7,8 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/corelib' -/usr/bin/make -C util -w -j11 --jobserver-auth=7,8 check_add_r || exit 5 +/usr/bin/make -C util -w -j21 --jobserver-auth=7,8 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -C regexp -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make -C regexp -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/regexp' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/regexp' SKIP -- util/regexp/test_pcre make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/regexp' -/usr/bin/make -C xregexp -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C xregexp -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/xregexp' -/usr/bin/make -C compress -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C compress -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -C bzip2 -w -j11 --jobserver-auth=11,12 check_add_r || exit 5 +make[6]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make -C bzip2 -w -j21 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. NOTE: Skipping project bzip2 due to unmet requirements: LocalBZ2 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/bzip2' -make[8]: warning: -j11 forced in submake: resetting jobserver mode. +make[8]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/bzip2' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/bzip2' make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/bzip2' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/bzip2' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/compress/bzip2 TMPL=bzip2 -w -j11 --jobserver-auth=15,16 mark-as-disabled -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/compress/bzip2 TMPL=bzip2 -w -j21 --jobserver-auth=15,16 mark-as-disabled +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/bzip2' make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/bzip2' make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/bzip2' make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/bzip2' -/usr/bin/make -C zlib -w -j11 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C zlib -w -j21 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. NOTE: Skipping project zlib due to unmet requirements: LocalZ make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/zlib' -make[8]: warning: -j11 forced in submake: resetting jobserver mode. +make[8]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/zlib' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/zlib' make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/zlib' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/zlib' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/compress/zlib TMPL=zlib -w -j11 --jobserver-auth=15,16 mark-as-disabled -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/util/compress/zlib TMPL=zlib -w -j21 --jobserver-auth=15,16 mark-as-disabled +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/zlib' make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/zlib' make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/zlib' make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/zlib' -/usr/bin/make -C api -w -j11 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C api -w -j21 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress/api' make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/compress' @@ -71805,20 +71837,20 @@ Warning: non-existent sub-project "diff" /bin/echo 'Warning: non-existent sub-project "image"' Warning: non-existent sub-project "image" -/usr/bin/make -C tables -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C tables -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/tables' -/usr/bin/make -C sequtil -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C sequtil -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/sequtil' -/usr/bin/make -C bitset -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C bitset -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "demo"' @@ -71826,31 +71858,31 @@ make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/bitset' /bin/echo 'Warning: non-existent sub-project "qparse"' Warning: non-existent sub-project "qparse" -/usr/bin/make -C lmdb -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C lmdb -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. NOTE: Skipping project lmdb due to unmet requirements: LocalLMDB make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/lmdb' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/lmdb' -make[8]: warning: -j11 forced in submake: resetting jobserver mode. +make[8]: warning: -j21 forced in submake: resetting jobserver mode. make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/lmdb' make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/lmdb' -make[8]: warning: -j11 forced in submake: resetting jobserver mode. +make[8]: warning: -j21 forced in submake: resetting jobserver mode. make[8]: *** No rule to make target '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/status/LocalLMDB.enabled', needed by 'requirements'. Stop. make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/lmdb' NOTE: skipping project "lmdb" due to unmet requirements make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/lmdb' -make[8]: warning: -j11 forced in submake: resetting jobserver mode. +make[8]: warning: -j21 forced in submake: resetting jobserver mode. make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/lmdb' make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/lmdb' make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/lmdb' -/usr/bin/make -C lmdbxx -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C lmdbxx -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/lmdbxx' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/lmdbxx' SKIP -- util/lmdbxx/lmdbxx_sample make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/lmdbxx' @@ -71858,18 +71890,18 @@ Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" -/usr/bin/make -C profile -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C profile -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util/profile' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/util' -/usr/bin/make -C connect -w -j11 --jobserver-auth=7,8 check_add_r || exit 5 +/usr/bin/make -C connect -w -j21 --jobserver-auth=7,8 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -C services -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make -C services -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect/services' @@ -71880,67 +71912,67 @@ /bin/echo 'Warning: non-existent sub-project "daemons"' Warning: non-existent sub-project "daemons" make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/connect' -/usr/bin/make -C cgi -w -j11 --jobserver-auth=7,8 check_add_r || exit 5 +/usr/bin/make -C cgi -w -j21 --jobserver-auth=7,8 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/cgi' -/usr/bin/make -C html -w -j11 --jobserver-auth=7,8 check_add_r || exit 5 +/usr/bin/make -C html -w -j21 --jobserver-auth=7,8 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/html' -/usr/bin/make -C build-system -w -j11 --jobserver-auth=7,8 check_add_r || exit 5 +/usr/bin/make -C build-system -w -j21 --jobserver-auth=7,8 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -C helpers -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make -C helpers -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/build-system' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/build-system/helpers' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/build-system/helpers' SKIP -- build-system/helpers/run_with_lock make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/build-system/helpers' -/usr/bin/make -C project_tree_builder -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C project_tree_builder -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/build-system' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/build-system/project_tree_builder' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/build-system/project_tree_builder' SKIP -- build-system/project_tree_builder/project_tree_builder -/usr/bin/make -C msbuild -w -j11 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C msbuild -w -j21 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/build-system/project_tree_builder' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. NOTE: Skipping project msbuild due to unmet requirements: MSWin make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/build-system/project_tree_builder/msbuild' -make[8]: warning: -j11 forced in submake: resetting jobserver mode. +make[8]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/build-system/project_tree_builder/msbuild' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/build-system/project_tree_builder/msbuild' make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/build-system/project_tree_builder/msbuild' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/build-system/project_tree_builder/msbuild' -/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/project_tree_builder/msbuild TMPL=msbuild_dataobj -w -j11 --jobserver-auth=15,16 mark-as-disabled -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +/usr/bin/make -f /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/Makefile.lib.tmpl srcdir=/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/src/build-system/project_tree_builder/msbuild TMPL=msbuild_dataobj -w -j21 --jobserver-auth=15,16 mark-as-disabled +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/build-system/project_tree_builder/msbuild' make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/build-system/project_tree_builder/msbuild' make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/build-system/project_tree_builder/msbuild' make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/build-system/project_tree_builder/msbuild' make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/build-system/project_tree_builder' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/build-system' -/usr/bin/make -C serial -w -j11 --jobserver-auth=7,8 check_add_r || exit 5 +/usr/bin/make -C serial -w -j21 --jobserver-auth=7,8 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -C datatool -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make -C datatool -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial/datatool' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial/datatool' TEST -- serial/datatool/datatool make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial/datatool' @@ -71948,18 +71980,18 @@ Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "soap"' Warning: non-existent sub-project "soap" -/usr/bin/make -C grpc_integration -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C grpc_integration -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial/grpc_integration' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/serial' -/usr/bin/make -C db -w -j11 --jobserver-auth=7,8 check_add_r || exit 5 +/usr/bin/make -C db -w -j21 --jobserver-auth=7,8 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -C sqlite -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make -C sqlite -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/db' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/db/sqlite' /bin/echo 'Warning: non-existent sub-project "bdb"' @@ -71967,357 +71999,357 @@ make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/db' /bin/echo 'Warning: non-existent sub-project "dbapi"' Warning: non-existent sub-project "dbapi" -/usr/bin/make -C objects -w -j11 --jobserver-auth=7,8 check_add_r || exit 5 +/usr/bin/make -C objects -w -j21 --jobserver-auth=7,8 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -C general -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make -C general -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/general' -/usr/bin/make -C biblio -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C biblio -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/biblio' -/usr/bin/make -C medline -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C medline -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medline' -/usr/bin/make -C pub -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C pub -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pub' -/usr/bin/make -C seqcode -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C seqcode -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqcode' -/usr/bin/make -C seq -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C seq -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seq' -/usr/bin/make -C seqset -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C seqset -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqset' -/usr/bin/make -C submit -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C submit -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/submit' -/usr/bin/make -C seqedit -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C seqedit -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqedit' -/usr/bin/make -C seqsplit -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C seqsplit -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqsplit' -/usr/bin/make -C id1 -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C id1 -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id1' -/usr/bin/make -C id2 -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C id2 -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/id2' -/usr/bin/make -C entrez2 -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C entrez2 -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrez2' -/usr/bin/make -C pubmed -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C pubmed -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pubmed' -/usr/bin/make -C medlars -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C medlars -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/medlars' -/usr/bin/make -C mla -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C mla -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mla' -/usr/bin/make -C proj -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C proj -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/proj' -/usr/bin/make -C scoremat -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C scoremat -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/scoremat' -/usr/bin/make -C blast -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C blast -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blast' -/usr/bin/make -C blastdb -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C blastdb -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastdb' -/usr/bin/make -C blastxml -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C blastxml -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml' -/usr/bin/make -C blastxml2 -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C blastxml2 -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/blastxml2' -/usr/bin/make -C mmdb -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C mmdb -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mmdb' -/usr/bin/make -C cn3d -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C cn3d -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/cn3d' -/usr/bin/make -C cdd -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C cdd -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/cdd' -/usr/bin/make -C ncbimime -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C ncbimime -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/ncbimime' -/usr/bin/make -C pcsubstance -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C pcsubstance -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pcsubstance' -/usr/bin/make -C pcassay -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C pcassay -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/pcassay' -/usr/bin/make -C gbseq -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C gbseq -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/gbseq' -/usr/bin/make -C insdseq -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C insdseq -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/insdseq' -/usr/bin/make -C tinyseq -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C tinyseq -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/tinyseq' -/usr/bin/make -C biotree -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C biotree -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/biotree' -/usr/bin/make -C entrezgene -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C entrezgene -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/entrezgene' -/usr/bin/make -C omssa -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C omssa -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/omssa' -/usr/bin/make -C remap -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C remap -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/remap' -/usr/bin/make -C seqtest -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C seqtest -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/seqtest' -/usr/bin/make -C taxon1 -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C taxon1 -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon1' -/usr/bin/make -C taxon3 -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C taxon3 -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/taxon3' -/usr/bin/make -C gbproj -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C gbproj -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/gbproj' -/usr/bin/make -C trackmgr -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C trackmgr -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/trackmgr' -/usr/bin/make -C valerr -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C valerr -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/valerr' -/usr/bin/make -C valid -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C valid -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/valid' -/usr/bin/make -C access -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C access -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/access' -/usr/bin/make -C docsum -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C docsum -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/docsum' -/usr/bin/make -C featdef -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C featdef -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/featdef' -/usr/bin/make -C genomecoll -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C genomecoll -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -C gc_cli -w -j11 --jobserver-auth=11,12 check_add_r || exit 5 +make[6]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make -C gc_cli -w -j21 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll/gc_cli' -make[8]: warning: -j11 forced in submake: resetting jobserver mode. +make[8]: warning: -j21 forced in submake: resetting jobserver mode. make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll/gc_cli' SKIP -- objects/genomecoll/gc_cli/gc_cli (unmet build REQUIRES) make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll/gc_cli' make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genomecoll' -/usr/bin/make -C homologene -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C homologene -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/homologene' -/usr/bin/make -C mim -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C mim -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/mim' -/usr/bin/make -C objprt -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C objprt -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/objprt' -/usr/bin/make -C variation -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C variation -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation' -/usr/bin/make -C macro -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C macro -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/macro' -/usr/bin/make -C genesbyloc -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C genesbyloc -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/genesbyloc' -/usr/bin/make -C coords -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C coords -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/coords' -/usr/bin/make -C varrep -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C varrep -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/varrep' -/usr/bin/make -C variation_libs -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C variation_libs -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -C dbsnp -w -j11 --jobserver-auth=11,12 check_add_r || exit 5 +make[6]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make -C dbsnp -w -j21 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation_libs' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -C search_by_rsid -w -j11 --jobserver-auth=13,14 check_add_r || exit 5 +make[7]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make -C search_by_rsid -w -j21 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation_libs/dbsnp' -make[8]: warning: -j11 forced in submake: resetting jobserver mode. +make[8]: warning: -j21 forced in submake: resetting jobserver mode. make[8]: Nothing to be done for 'check_add_r'. make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation_libs/dbsnp/search_by_rsid' -/usr/bin/make -C tooltip_service -w -j11 --jobserver-auth=13,14 check_add_r || exit 5 +/usr/bin/make -C tooltip_service -w -j21 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation_libs/dbsnp' -make[8]: warning: -j11 forced in submake: resetting jobserver mode. +make[8]: warning: -j21 forced in submake: resetting jobserver mode. make[8]: Nothing to be done for 'check_add_r'. make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation_libs/dbsnp/tooltip_service' make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation_libs/dbsnp' make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/variation_libs' -/usr/bin/make -C dbsnp -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C dbsnp -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -C primary_track -w -j11 --jobserver-auth=11,12 check_add_r || exit 5 +make[6]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make -C primary_track -w -j21 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/dbsnp' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/dbsnp/primary_track' make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects/dbsnp' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objects' -/usr/bin/make -C objmgr -w -j11 --jobserver-auth=7,8 check_add_r || exit 5 +/usr/bin/make -C objmgr -w -j21 --jobserver-auth=7,8 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" -/usr/bin/make -C util -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C util -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/util' -/usr/bin/make -C split -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C split -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr/split' make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objmgr' -/usr/bin/make -C objtools -w -j11 --jobserver-auth=7,8 check_add_r || exit 5 +/usr/bin/make -C objtools -w -j21 --jobserver-auth=7,8 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -C logging -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make -C logging -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/logging' /bin/echo 'Warning: non-existent sub-project "unit_test_util"' Warning: non-existent sub-project "unit_test_util" -/usr/bin/make -C readers -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C readers -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "app"' Warning: non-existent sub-project "app" /bin/echo 'Warning: non-existent sub-project "test"' @@ -72325,87 +72357,87 @@ /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/readers' -/usr/bin/make -C blast -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C blast -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -C seqdb_reader -w -j11 --jobserver-auth=11,12 check_add_r || exit 5 +make[6]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make -C seqdb_reader -w -j21 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -C demo -w -j11 --jobserver-auth=13,14 check_add_r || exit 5 +make[7]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make -C demo -w -j21 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' -make[8]: warning: -j11 forced in submake: resetting jobserver mode. +make[8]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' SKIP -- objtools/blast/seqdb_reader/demo/seqdb_demo make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/demo' -/usr/bin/make -C test -w -j11 --jobserver-auth=13,14 check_add_r || exit 5 +/usr/bin/make -C test -w -j21 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' -make[8]: warning: -j11 forced in submake: resetting jobserver mode. +make[8]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' TEST -- objtools/blast/seqdb_reader/test/seqdb_perf make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader/test' make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_reader' -/usr/bin/make -C seqdb_writer -w -j11 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C seqdb_writer -w -j21 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -C unit_test -w -j11 --jobserver-auth=13,14 check_add_r || exit 5 +make[7]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make -C unit_test -w -j21 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' -make[8]: warning: -j11 forced in submake: resetting jobserver mode. +make[8]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' TEST -- objtools/blast/seqdb_writer/unit_test/writedb_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' TEST -- objtools/blast/seqdb_writer/unit_test/writedb_lmdb_unit_test make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer/unit_test' make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/seqdb_writer' -/usr/bin/make -C gene_info_reader -w -j11 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C gene_info_reader -w -j21 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -C demo -w -j11 --jobserver-auth=13,14 check_add_r || exit 5 +make[7]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make -C demo -w -j21 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' -make[8]: warning: -j11 forced in submake: resetting jobserver mode. +make[8]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' SKIP -- objtools/blast/gene_info_reader/demo/gene_info_reader make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/demo' -/usr/bin/make -C unit_test -w -j11 --jobserver-auth=13,14 check_add_r || exit 5 +/usr/bin/make -C unit_test -w -j21 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' -make[8]: warning: -j11 forced in submake: resetting jobserver mode. +make[8]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' TEST -- objtools/blast/gene_info_reader/unit_test/gene_info_unit_test make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader/unit_test' make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/gene_info_reader' /bin/echo 'Warning: non-existent sub-project "gene_info_writer"' Warning: non-existent sub-project "gene_info_writer" -/usr/bin/make -C services -w -j11 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C services -w -j21 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -C unit_test -w -j11 --jobserver-auth=13,14 check_add_r || exit 5 +make[7]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make -C unit_test -w -j21 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services' -make[8]: warning: -j11 forced in submake: resetting jobserver mode. +make[8]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' SKIP -- objtools/blast/services/unit_test/blast_services_unit_test make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services/unit_test' make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/services' -/usr/bin/make -C blastdb_format -w -j11 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C blastdb_format -w -j21 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -C unit_test -w -j11 --jobserver-auth=13,14 check_add_r || exit 5 +make[7]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make -C unit_test -w -j21 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format' -make[8]: warning: -j11 forced in submake: resetting jobserver mode. +make[8]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' TEST -- objtools/blast/blastdb_format/unit_test/blastdb_format_unit_test make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast/blastdb_format/unit_test' @@ -72413,21 +72445,21 @@ make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/blast' /bin/echo 'Warning: non-existent sub-project "lds2"' Warning: non-existent sub-project "lds2" -/usr/bin/make -C pubseq_gateway -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C pubseq_gateway -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "diag"' Warning: non-existent sub-project "diag" /bin/echo 'Warning: non-existent sub-project "cassandra"' Warning: non-existent sub-project "cassandra" -/usr/bin/make -C client -w -j11 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C client -w -j21 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -C test -w -j11 --jobserver-auth=13,14 check_add_r || exit 5 +make[7]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make -C test -w -j21 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client' -make[8]: warning: -j11 forced in submake: resetting jobserver mode. +make[8]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client/test' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client/test' SKIP -- objtools/pubseq_gateway/client/test/test_psg_client_impl (unmet build REQUIRES) make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway/client/test' @@ -72437,34 +72469,34 @@ /bin/echo 'Warning: non-existent sub-project "cache"' Warning: non-existent sub-project "cache" make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/pubseq_gateway' -/usr/bin/make -C data_loaders -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C data_loaders -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -C genbank -w -j11 --jobserver-auth=11,12 check_add_r || exit 5 +make[6]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make -C genbank -w -j21 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -C cache -w -j11 --jobserver-auth=13,14 check_add_r || exit 5 +make[7]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make -C cache -w -j21 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -make[8]: warning: -j11 forced in submake: resetting jobserver mode. +make[8]: warning: -j21 forced in submake: resetting jobserver mode. make[8]: Nothing to be done for 'check_add_r'. make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/cache' /bin/echo 'Warning: non-existent sub-project "pubseq"' Warning: non-existent sub-project "pubseq" -/usr/bin/make -C id2 -w -j11 --jobserver-auth=13,14 check_add_r || exit 5 +/usr/bin/make -C id2 -w -j21 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -make[8]: warning: -j11 forced in submake: resetting jobserver mode. +make[8]: warning: -j21 forced in submake: resetting jobserver mode. make[8]: Nothing to be done for 'check_add_r'. make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id2' -/usr/bin/make -C id1 -w -j11 --jobserver-auth=13,14 check_add_r || exit 5 +/usr/bin/make -C id1 -w -j21 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -make[8]: warning: -j11 forced in submake: resetting jobserver mode. +make[8]: warning: -j21 forced in submake: resetting jobserver mode. make[8]: Nothing to be done for 'check_add_r'. make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/id1' /bin/echo 'Warning: non-existent sub-project "pubseq2"' Warning: non-existent sub-project "pubseq2" -/usr/bin/make -C gicache -w -j11 --jobserver-auth=13,14 check_add_r || exit 5 +/usr/bin/make -C gicache -w -j21 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' -make[8]: warning: -j11 forced in submake: resetting jobserver mode. +make[8]: warning: -j21 forced in submake: resetting jobserver mode. make[8]: Nothing to be done for 'check_add_r'. make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank/gicache' /bin/echo 'Warning: non-existent sub-project "test"' @@ -72472,9 +72504,9 @@ make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/genbank' /bin/echo 'Warning: non-existent sub-project "lds2"' Warning: non-existent sub-project "lds2" -/usr/bin/make -C blastdb -w -j11 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C blastdb -w -j21 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders/blastdb' @@ -72485,14 +72517,14 @@ /bin/echo 'Warning: non-existent sub-project "cdd"' Warning: non-existent sub-project "cdd" make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/data_loaders' -/usr/bin/make -C simple -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C simple -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/simple' -/usr/bin/make -C alnmgr -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C alnmgr -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "demo"' Warning: non-existent sub-project "demo" /bin/echo 'Warning: non-existent sub-project "unit_test"' @@ -72504,77 +72536,77 @@ Warning: non-existent sub-project "test" /bin/echo 'Warning: non-existent sub-project "manip"' Warning: non-existent sub-project "manip" -/usr/bin/make -C eutils -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C eutils -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -C egquery -w -j11 --jobserver-auth=11,12 check_add_r || exit 5 +make[6]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make -C egquery -w -j21 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/egquery' -/usr/bin/make -C elink -w -j11 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C elink -w -j21 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/elink' -/usr/bin/make -C epost -w -j11 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C epost -w -j21 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/epost' -/usr/bin/make -C esearch -w -j11 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C esearch -w -j21 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esearch' -/usr/bin/make -C espell -w -j11 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C espell -w -j21 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/espell' -/usr/bin/make -C esummary -w -j11 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C esummary -w -j21 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/esummary' /bin/echo 'Warning: non-existent sub-project "linkout"' Warning: non-existent sub-project "linkout" -/usr/bin/make -C einfo -w -j11 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C einfo -w -j21 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/einfo' -/usr/bin/make -C uilist -w -j11 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C uilist -w -j21 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/uilist' -/usr/bin/make -C ehistory -w -j11 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C ehistory -w -j21 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/ehistory' -/usr/bin/make -C api -w -j11 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C api -w -j21 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils/api' make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/eutils' -/usr/bin/make -C edit -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C edit -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/edit' -/usr/bin/make -C cleanup -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C cleanup -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "test"' Warning: non-existent sub-project "test" make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/cleanup' -/usr/bin/make -C format -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C format -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/format' /bin/echo 'Warning: non-existent sub-project "validator"' @@ -72583,20 +72615,20 @@ Warning: non-existent sub-project "asniotest" /bin/echo 'Warning: non-existent sub-project "align"' Warning: non-existent sub-project "align" -/usr/bin/make -C seqmasks_io -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C seqmasks_io -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "unit_test"' Warning: non-existent sub-project "unit_test" make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/seqmasks_io' -/usr/bin/make -C align_format -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C align_format -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -C unit_test -w -j11 --jobserver-auth=11,12 check_add_r || exit 5 +make[6]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make -C unit_test -w -j21 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format/unit_test' -make[8]: warning: -j11 forced in submake: resetting jobserver mode. +make[8]: warning: -j21 forced in submake: resetting jobserver mode. make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format/unit_test' TEST -- objtools/align_format/unit_test/align_format_unit_test make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/objtools/align_format/unit_test' @@ -72618,78 +72650,78 @@ Warning: non-existent sub-project "ctools" /bin/echo 'Warning: non-existent sub-project "sra"' Warning: non-existent sub-project "sra" -/usr/bin/make -C algo -w -j11 --jobserver-auth=7,8 check_add_r || exit 5 +/usr/bin/make -C algo -w -j21 --jobserver-auth=7,8 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -C dustmask -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make -C dustmask -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/dustmask' -/usr/bin/make -C winmask -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C winmask -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/winmask' /bin/echo 'Warning: non-existent sub-project "sequence"' Warning: non-existent sub-project "sequence" -/usr/bin/make -C blast -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C blast -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -C composition_adjustment -w -j11 --jobserver-auth=11,12 check_add_r || exit 5 +make[6]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make -C composition_adjustment -w -j21 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/composition_adjustment' -/usr/bin/make -C core -w -j11 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C core -w -j21 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/core' -/usr/bin/make -C dbindex -w -j11 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C dbindex -w -j21 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -C makeindex -w -j11 --jobserver-auth=13,14 check_add_r || exit 5 +make[7]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make -C makeindex -w -j21 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex' -make[8]: warning: -j11 forced in submake: resetting jobserver mode. +make[8]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' SKIP -- algo/blast/dbindex/makeindex/makeindex make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex/makeindex' make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/dbindex' /bin/echo 'Warning: non-existent sub-project "dbindex_search"' Warning: non-existent sub-project "dbindex_search" -/usr/bin/make -C api -w -j11 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C api -w -j21 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/api' -/usr/bin/make -C proteinkmer -w -j11 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C proteinkmer -w -j21 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -C unit_test -w -j11 --jobserver-auth=13,14 check_add_r || exit 5 +make[7]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make -C unit_test -w -j21 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer' -make[8]: warning: -j11 forced in submake: resetting jobserver mode. +make[8]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' TEST -- algo/blast/proteinkmer/unit_test/proteinkmer_unit_test make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer/unit_test' make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/proteinkmer' -/usr/bin/make -C format -w -j11 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C format -w -j21 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/format' -/usr/bin/make -C blastinput -w -j11 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C blastinput -w -j21 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -C unit_test -w -j11 --jobserver-auth=13,14 check_add_r || exit 5 +make[7]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make -C unit_test -w -j21 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput' -make[8]: warning: -j11 forced in submake: resetting jobserver mode. +make[8]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' TEST -- algo/blast/blastinput/unit_test/blastinput_unit_test make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput/unit_test' @@ -72698,249 +72730,249 @@ make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/blastinput' /bin/echo 'Warning: non-existent sub-project "blast_sra_input"' Warning: non-existent sub-project "blast_sra_input" -/usr/bin/make -C igblast -w -j11 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C igblast -w -j21 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'check_add_r'. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/igblast' /bin/echo 'Warning: non-existent sub-project "gumbel_params"' Warning: non-existent sub-project "gumbel_params" -/usr/bin/make -C unit_tests -w -j11 --jobserver-auth=11,12 check_add_r || exit 5 +/usr/bin/make -C unit_tests -w -j21 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -C blast_format -w -j11 --jobserver-auth=13,14 check_add_r || exit 5 +make[7]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make -C blast_format -w -j21 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests' -make[8]: warning: -j11 forced in submake: resetting jobserver mode. +make[8]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' TEST -- algo/blast/unit_tests/blast_format/blast_format_unit_test make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blast_format' -/usr/bin/make -C blastdb -w -j11 --jobserver-auth=13,14 check_add_r || exit 5 +/usr/bin/make -C blastdb -w -j21 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests' -make[8]: warning: -j11 forced in submake: resetting jobserver mode. +make[8]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' TEST -- algo/blast/unit_tests/blastdb/bdbloader_unit_test make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/blastdb' -/usr/bin/make -C seqdb_reader -w -j11 --jobserver-auth=13,14 check_add_r || exit 5 +/usr/bin/make -C seqdb_reader -w -j21 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests' -make[8]: warning: -j11 forced in submake: resetting jobserver mode. +make[8]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' TEST -- algo/blast/unit_tests/seqdb_reader/seqdb_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' TEST -- algo/blast/unit_tests/seqdb_reader/seqdb_lmdb_unit_test make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/seqdb_reader' -/usr/bin/make -C api -w -j11 --jobserver-auth=13,14 check_add_r || exit 5 +/usr/bin/make -C api -w -j21 --jobserver-auth=13,14 check_add_r || exit 5 make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests' -make[8]: warning: -j11 forced in submake: resetting jobserver mode. +make[8]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/blast_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/aalookup_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/seqsrc_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/delta_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/ntlookup_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/seqinfosrc_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/setupfactory_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/search_strategy_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/redoalignment_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/queryinfo_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/querydata_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/pssmenginefreqratios_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/blastsetup_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/blastextend_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/blastdiag_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/pssmcreate_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/psiblast_iteration_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/hspfilter_besthit_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/hspfilter_culling_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/optionshandle_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/msa2pssm_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/tracebacksearch_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/traceback_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/psibl2seq_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/psiblast_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/prelimsearch_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/phiblast_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/split_query_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/scoreblk_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/hspstream_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/rps_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/gapinfo_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/blasthits_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/linkhsp_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/blastengine_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/subj_ranges_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/version_reference_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/ntscan_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/aascan_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/remote_blast_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/uniform_search_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/blastfilter_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/blastoptions_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/gencode_singleton_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/bl2seq_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/stat_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/magicblast_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/rmblast_blasthits_unit_test make[9]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' -make[9]: warning: -j11 forced in submake: resetting jobserver mode. +make[9]: warning: -j21 forced in submake: resetting jobserver mode. make[9]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' TEST -- algo/blast/unit_tests/api/rmblast_traceback_unit_test make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api' make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests' make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast' -/usr/bin/make -C segmask -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C segmask -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/segmask' /bin/echo 'Warning: non-existent sub-project "align"' @@ -72966,21 +72998,21 @@ /bin/echo 'Warning: non-existent sub-project "id_mapper"' Warning: non-existent sub-project "id_mapper" make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo' -/usr/bin/make -C misc -w -j11 --jobserver-auth=7,8 check_add_r || exit 5 +/usr/bin/make -C misc -w -j21 --jobserver-auth=7,8 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -C third_party -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +make[5]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make -C third_party -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/misc' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[6]: Nothing to be done for 'check_add_r'. make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/misc/third_party' -/usr/bin/make -C third_party_static -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C third_party_static -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/misc' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. NOTE: Skipping project third_party_static due to unmet requirements: -DLL make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/misc/third_party_static' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. make[7]: Nothing to be done for 'mark-as-disabled_r'. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/misc/third_party_static' make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/misc/third_party_static' @@ -73002,18 +73034,18 @@ Warning: non-existent sub-project "hgvs" /bin/echo 'Warning: non-existent sub-project "netstorage"' Warning: non-existent sub-project "netstorage" -/usr/bin/make -C jsonwrapp -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C jsonwrapp -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/misc' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. -/usr/bin/make -C test -w -j11 --jobserver-auth=11,12 check_add_r || exit 5 +make[6]: warning: -j21 forced in submake: resetting jobserver mode. +/usr/bin/make -C test -w -j21 --jobserver-auth=11,12 check_add_r || exit 5 make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/misc/jsonwrapp' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/misc/jsonwrapp/test' -make[8]: warning: -j11 forced in submake: resetting jobserver mode. +make[8]: warning: -j21 forced in submake: resetting jobserver mode. make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/misc/jsonwrapp/test' TEST -- misc/jsonwrapp/test/test_jsonwrapp make[8]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/misc/jsonwrapp/test' -make[8]: warning: -j11 forced in submake: resetting jobserver mode. +make[8]: warning: -j21 forced in submake: resetting jobserver mode. make[8]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/misc/jsonwrapp/test' TEST -- misc/jsonwrapp/test/test_jsonwrapp10 make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/misc/jsonwrapp/test' @@ -73033,9 +73065,9 @@ make[5]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/misc' /bin/echo 'Warning: non-existent sub-project "gui"' Warning: non-existent sub-project "gui" -/usr/bin/make -C app -w -j11 --jobserver-auth=7,8 check_add_r || exit 5 +/usr/bin/make -C app -w -j21 --jobserver-auth=7,8 check_add_r || exit 5 make[5]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build' -make[5]: warning: -j11 forced in submake: resetting jobserver mode. +make[5]: warning: -j21 forced in submake: resetting jobserver mode. /bin/echo 'Warning: non-existent sub-project "asn2asn"' Warning: non-existent sub-project "asn2asn" /bin/echo 'Warning: non-existent sub-project "asn2fasta"' @@ -73050,55 +73082,55 @@ Warning: non-existent sub-project "asn_cleanup" /bin/echo 'Warning: non-existent sub-project "id1_fetch"' Warning: non-existent sub-project "id1_fetch" -/usr/bin/make -C blast -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C blast -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' SKIP -- app/blast/blastp make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' SKIP -- app/blast/blastn make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' SKIP -- app/blast/blastx make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' SKIP -- app/blast/tblastn make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' SKIP -- app/blast/tblastx make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' SKIP -- app/blast/psiblast make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' SKIP -- app/blast/rpsblast make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' SKIP -- app/blast/rpstblastn make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' SKIP -- app/blast/blast_formatter make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' SKIP -- app/blast/blast_report make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' SKIP -- app/blast/deltablast make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' SKIP -- app/blast/seedtop make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blast' @@ -73118,67 +73150,67 @@ Warning: non-existent sub-project "netstorage" /bin/echo 'Warning: non-existent sub-project "igblast"' Warning: non-existent sub-project "igblast" -/usr/bin/make -C winmasker -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C winmasker -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' SKIP -- app/winmasker/winmasker make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/winmasker' -/usr/bin/make -C dustmasker -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C dustmasker -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/dustmasker' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/dustmasker' SKIP -- app/dustmasker/dustmasker make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/dustmasker' -/usr/bin/make -C segmasker -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C segmasker -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/segmasker' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/segmasker' SKIP -- app/segmasker/segmasker make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/segmasker' -/usr/bin/make -C blastdb -w -j11 --jobserver-auth=9,10 check_add_r || exit 5 +/usr/bin/make -C blastdb -w -j21 --jobserver-auth=9,10 check_add_r || exit 5 make[6]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app' -make[6]: warning: -j11 forced in submake: resetting jobserver mode. +make[6]: warning: -j21 forced in submake: resetting jobserver mode. make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' SKIP -- app/blastdb/blastdbcmd make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' SKIP -- app/blastdb/makeblastdb make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' SKIP -- app/blastdb/blastdb_aliastool make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' SKIP -- app/blastdb/blastdbcheck make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' SKIP -- app/blastdb/convert2blastmask make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' SKIP -- app/blastdb/blastdbcp make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' SKIP -- app/blastdb/makeprofiledb make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' SKIP -- app/blastdb/blastdb_convert make[7]: Entering directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' -make[7]: warning: -j11 forced in submake: resetting jobserver mode. +make[7]: warning: -j21 forced in submake: resetting jobserver mode. make[7]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' SKIP -- app/blastdb/blastdb_path make[6]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/app/blastdb' @@ -73339,12 +73371,12 @@ Testing, please wait... -OK -- [serial/datatool] datatool.sh (real 0.87, user 0.37, sys 0.09) +OK -- [serial/datatool] datatool.sh (real 0.31, user 0.23, sys 0.06) SKP -- [serial/datatool] datatool_xml.sh -OK -- [objtools/blast/gene_info_reader/unit_test] gene_info_unit_test (real 0.04, user 0.02, sys 0.00) -OK -- [algo/blast/proteinkmer/unit_test] proteinkmer_unit_test (real 13.19, user 8.17, sys 2.84) -OK -- [algo/blast/unit_tests/api] blastdiag_unit_test (real 0.03, user 0.02, sys 0.01) -TO -- [algo/blast/unit_tests/api] aascan_unit_test (real 200.32, user 0.17, sys 0.06) +OK -- [objtools/blast/gene_info_reader/unit_test] gene_info_unit_test (real 0.02, user 0.02, sys 0.00) +OK -- [algo/blast/proteinkmer/unit_test] proteinkmer_unit_test (real 8.02, user 4.38, sys 1.47) +OK -- [algo/blast/unit_tests/api] blastdiag_unit_test (real 0.02, user 0.02, sys 0.00) +TO -- [algo/blast/unit_tests/api] aascan_unit_test (real 200.13, user 0.12, sys 0.06) ABS -- [misc/jsonwrapp/test] test_jsonwrapp ABS -- [misc/jsonwrapp/test] test_jsonwrapp10 @@ -73360,120 +73392,120 @@ make[2]: Leaving directory '/build/reproducible-path/ncbi-blast+-2.12.0+ds/c++' c++/BUILD/build/check.sh concat_err cat c++/BUILD/build/check.sh.out_err -TO -- [algo/blast/unit_tests/api] aascan_unit_test (real 200.32, user 0.17, sys 0.06) +TO -- [algo/blast/unit_tests/api] aascan_unit_test (real 200.13, user 0.12, sys 0.06) ====================================================================== aascan_unit_test ====================================================================== -47363/000/0000/PB DF75B90361B454F1 0001/0001 2024-04-13T14:54:07.140945 ionos2-i386 UNK_CLIENT UNK_SESSION aascan_unit_test start /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api/aascan_unit_test -47363/000/0000/PB DF75B90361B454F1 0002/0002 2024-04-13T14:54:07.141466 ionos2-i386 UNK_CLIENT UNK_SESSION aascan_unit_test extra ncbi_app_username=pbuilder1&ncbi_app_path=/build/reproducible-path/ncbi-blast%2B-2.12.0%2Bds/c%2B%2B/BUILD/build/algo/blast/unit_tests/api/aascan_unit_test&ncbi_app_build_date=Sep++5+2023+02:40:42&ncbi_app_package_name=blast&ncbi_app_package_version=2.12.0&ncbi_app_package_date=Sep++5+2023+02:40:42&ncbi_app_version=2.12.0 +30185/000/0000/PB AF2875E982861541 0001/0001 2025-05-18T00:13:40.778479 i-capture-the-hostname UNK_CLIENT UNK_SESSION aascan_unit_test start /build/reproducible-path/ncbi-blast+-2.12.0+ds/c++/BUILD/build/algo/blast/unit_tests/api/aascan_unit_test +30185/000/0000/PB AF2875E982861541 0002/0002 2025-05-18T00:13:40.778720 i-capture-the-hostname UNK_CLIENT UNK_SESSION aascan_unit_test extra ncbi_app_username=pbuilder2&ncbi_app_path=/build/reproducible-path/ncbi-blast%2B-2.12.0%2Bds/c%2B%2B/BUILD/build/algo/blast/unit_tests/api/aascan_unit_test&ncbi_app_build_date=Sep++5+2023+02:40:42&ncbi_app_package_name=blast&ncbi_app_package_version=2.12.0&ncbi_app_package_date=Sep++5+2023+02:40:42&ncbi_app_version=2.12.0 Running 4 test cases... -47363/000/0001/RB DF75B90361B454F1 0003/0003 2024-04-13T14:54:07.144856 ionos2-i386 UNK_CLIENT UNK_SESSION aascan_unit_test request-start test_name=ScanOffsetTest&ncbi_app_version=2.12.0 -47363/000/0001/R DF75B90361B454F1 0004/0004 2024-04-13T14:54:07.145604 ionos2-i386 UNK_CLIENT UNK_SESSION aascan_unit_test extra ncbi_phid=DF75B90361B454F10000000000010001 -47363/000/0001/R DF75B90361B454F1 0005/0005 2024-04-13T14:54:07.145642 ionos2-i386 UNK_CLIENT UNK_SESSION aascan_unit_test extra issued_subhit=1 -47363/000/0001/R DF75B90361B454F1 0006/0006 2024-04-13T14:54:07.148091 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test extra issued_subhit=2 -47363/000/0001/R DF75B90361B454F1 0007/0007 2024-04-13T14:54:07.150995 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4228: UNK_FUNC --- SSOCK#1000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -47363/000/0001/R DF75B90361B454F1 0008/0008 2024-04-13T14:54:07.151042 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2119: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=ionos2-i386.debian.net&platform=x86_64-pc-linux-gnux32] Failed to connect: Unknown -47363/000/0001/R DF75B90361B454F1 0009/0009 2024-04-13T14:54:07.151070 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=ionos2-i386.debian.net&platform=x86_64-pc-linux-gnux32": Unknown -47363/000/0001/R DF75B90361B454F1 0010/0010 2024-04-13T14:54:07.151094 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found -47363/000/0001/R DF75B90361B454F1 0011/0011 2024-04-13T14:54:07.151118 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 123: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -47363/000/0001/R DF75B90361B454F1 0012/0012 2024-04-13T14:54:07.151478 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test extra issued_subhit=3 -47363/000/0001/R DF75B90361B454F1 0013/0013 2024-04-13T14:54:07.151843 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test extra issued_subhit=4 -47363/000/0001/R DF75B90361B454F1 0014/0014 2024-04-13T14:54:07.151958 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4228: UNK_FUNC --- SSOCK#2000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -47363/000/0001/R DF75B90361B454F1 0015/0015 2024-04-13T14:54:07.151982 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2119: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=ionos2-i386.debian.net&platform=x86_64-pc-linux-gnux32] Failed to connect: Unknown -47363/000/0001/R DF75B90361B454F1 0016/0016 2024-04-13T14:54:07.152020 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=ionos2-i386.debian.net&platform=x86_64-pc-linux-gnux32": Unknown -47363/000/0001/R DF75B90361B454F1 0017/0017 2024-04-13T14:54:07.152041 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found -47363/000/0001/R DF75B90361B454F1 0018/0018 2024-04-13T14:54:07.152073 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 123: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -47363/000/0001/R DF75B90361B454F1 0019/0019 2024-04-13T14:54:07.152161 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test extra issued_subhit=5 -47363/000/0001/R DF75B90361B454F1 0020/0020 2024-04-13T14:54:08.152818 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test extra issued_subhit=6 -47363/000/0001/R DF75B90361B454F1 0021/0021 2024-04-13T14:54:08.153017 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4228: UNK_FUNC --- SSOCK#3000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -47363/000/0001/R DF75B90361B454F1 0022/0022 2024-04-13T14:54:08.153047 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2119: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=ionos2-i386.debian.net&platform=x86_64-pc-linux-gnux32] Failed to connect: Unknown -47363/000/0001/R DF75B90361B454F1 0023/0023 2024-04-13T14:54:08.153073 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=ionos2-i386.debian.net&platform=x86_64-pc-linux-gnux32": Unknown -47363/000/0001/R DF75B90361B454F1 0024/0024 2024-04-13T14:54:08.153096 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found -47363/000/0001/R DF75B90361B454F1 0025/0025 2024-04-13T14:54:08.153119 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 123: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -47363/000/0001/R DF75B90361B454F1 0026/0026 2024-04-13T14:54:08.153283 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test extra issued_subhit=7 -47363/000/0001/R DF75B90361B454F1 0027/0027 2024-04-13T14:54:10.653919 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test extra issued_subhit=8 -47363/000/0001/R DF75B90361B454F1 0028/0028 2024-04-13T14:54:10.654121 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4228: UNK_FUNC --- SSOCK#4000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -47363/000/0001/R DF75B90361B454F1 0029/0029 2024-04-13T14:54:10.654152 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2119: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=ionos2-i386.debian.net&platform=x86_64-pc-linux-gnux32] Failed to connect: Unknown -47363/000/0001/R DF75B90361B454F1 0030/0030 2024-04-13T14:54:10.654177 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=ionos2-i386.debian.net&platform=x86_64-pc-linux-gnux32": Unknown -47363/000/0001/R DF75B90361B454F1 0031/0031 2024-04-13T14:54:10.654214 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found -47363/000/0001/R DF75B90361B454F1 0032/0032 2024-04-13T14:54:10.654237 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 123: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -47363/000/0001/R DF75B90361B454F1 0033/0033 2024-04-13T14:54:10.654447 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test extra issued_subhit=9 -47363/000/0001/R DF75B90361B454F1 0034/0034 2024-04-13T14:54:15.405078 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test extra issued_subhit=10 -47363/000/0001/R DF75B90361B454F1 0035/0035 2024-04-13T14:54:15.405291 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4228: UNK_FUNC --- SSOCK#5000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -47363/000/0001/R DF75B90361B454F1 0036/0036 2024-04-13T14:54:15.405328 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2119: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=ionos2-i386.debian.net&platform=x86_64-pc-linux-gnux32] Failed to connect: Unknown -47363/000/0001/R DF75B90361B454F1 0037/0037 2024-04-13T14:54:15.405354 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=ionos2-i386.debian.net&platform=x86_64-pc-linux-gnux32": Unknown -47363/000/0001/R DF75B90361B454F1 0038/0038 2024-04-13T14:54:15.405388 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found -47363/000/0001/R DF75B90361B454F1 0039/0039 2024-04-13T14:54:15.405412 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 123: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -47363/000/0001/R DF75B90361B454F1 0040/0040 2024-04-13T14:54:15.419998 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test extra issued_subhit=11 -47363/000/0001/R DF75B90361B454F1 0041/0041 2024-04-13T14:54:23.545769 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test extra issued_subhit=12 -47363/000/0001/R DF75B90361B454F1 0042/0042 2024-04-13T14:54:23.546042 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4228: UNK_FUNC --- SSOCK#6000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -47363/000/0001/R DF75B90361B454F1 0043/0043 2024-04-13T14:54:23.546083 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2119: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=ionos2-i386.debian.net&platform=x86_64-pc-linux-gnux32] Failed to connect: Unknown -47363/000/0001/R DF75B90361B454F1 0044/0044 2024-04-13T14:54:23.546124 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=ionos2-i386.debian.net&platform=x86_64-pc-linux-gnux32": Unknown -47363/000/0001/R DF75B90361B454F1 0045/0045 2024-04-13T14:54:23.546173 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found -47363/000/0001/R DF75B90361B454F1 0046/0046 2024-04-13T14:54:23.546204 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 123: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -47363/000/0001/R DF75B90361B454F1 0047/0047 2024-04-13T14:54:23.546469 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test extra issued_subhit=13 -47363/000/0001/R DF75B90361B454F1 0048/0048 2024-04-13T14:54:36.734878 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test extra issued_subhit=14 -47363/000/0001/R DF75B90361B454F1 0049/0049 2024-04-13T14:54:36.735095 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4228: UNK_FUNC --- SSOCK#7000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -47363/000/0001/R DF75B90361B454F1 0050/0050 2024-04-13T14:54:36.735127 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2119: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=ionos2-i386.debian.net&platform=x86_64-pc-linux-gnux32] Failed to connect: Unknown -47363/000/0001/R DF75B90361B454F1 0051/0051 2024-04-13T14:54:36.735153 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=ionos2-i386.debian.net&platform=x86_64-pc-linux-gnux32": Unknown -47363/000/0001/R DF75B90361B454F1 0052/0052 2024-04-13T14:54:36.735175 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found -47363/000/0001/R DF75B90361B454F1 0053/0053 2024-04-13T14:54:36.735198 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 123: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -47363/000/0001/R DF75B90361B454F1 0054/0054 2024-04-13T14:54:36.735379 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test extra issued_subhit=15 -47363/000/0001/R DF75B90361B454F1 0055/0055 2024-04-13T14:54:57.518677 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test extra issued_subhit=16 -47363/000/0001/R DF75B90361B454F1 0056/0056 2024-04-13T14:54:57.518955 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4228: UNK_FUNC --- SSOCK#8000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -47363/000/0001/R DF75B90361B454F1 0057/0057 2024-04-13T14:54:57.518990 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2119: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=ionos2-i386.debian.net&platform=x86_64-pc-linux-gnux32] Failed to connect: Unknown -47363/000/0001/R DF75B90361B454F1 0058/0058 2024-04-13T14:54:57.519017 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=ionos2-i386.debian.net&platform=x86_64-pc-linux-gnux32": Unknown -47363/000/0001/R DF75B90361B454F1 0059/0059 2024-04-13T14:54:57.519042 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found -47363/000/0001/R DF75B90361B454F1 0060/0060 2024-04-13T14:54:57.519084 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 123: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -47363/000/0001/R DF75B90361B454F1 0061/0061 2024-04-13T14:54:57.519296 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test extra issued_subhit=17 -47363/000/0001/R DF75B90361B454F1 0062/0062 2024-04-13T14:55:27.523003 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test extra issued_subhit=18 -47363/000/0001/R DF75B90361B454F1 0063/0063 2024-04-13T14:55:27.523285 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4228: UNK_FUNC --- SSOCK#9000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -47363/000/0001/R DF75B90361B454F1 0064/0064 2024-04-13T14:55:27.523317 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2119: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=ionos2-i386.debian.net&platform=x86_64-pc-linux-gnux32] Failed to connect: Unknown -47363/000/0001/R DF75B90361B454F1 0065/0065 2024-04-13T14:55:27.523343 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=ionos2-i386.debian.net&platform=x86_64-pc-linux-gnux32": Unknown -47363/000/0001/R DF75B90361B454F1 0066/0066 2024-04-13T14:55:27.523368 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found -47363/000/0001/R DF75B90361B454F1 0067/0067 2024-04-13T14:55:27.523391 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 123: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -47363/000/0001/R DF75B90361B454F1 0068/0068 2024-04-13T14:55:27.523594 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test extra issued_subhit=19 -47363/000/0001/R DF75B90361B454F1 0069/0069 2024-04-13T14:55:57.524462 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test extra issued_subhit=20 -47363/000/0001/R DF75B90361B454F1 0070/0070 2024-04-13T14:55:57.524787 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4228: UNK_FUNC --- SSOCK#10000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -47363/000/0001/R DF75B90361B454F1 0071/0071 2024-04-13T14:55:57.524832 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2119: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=ionos2-i386.debian.net&platform=x86_64-pc-linux-gnux32] Failed to connect: Unknown -47363/000/0001/R DF75B90361B454F1 0072/0072 2024-04-13T14:55:57.524870 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=ionos2-i386.debian.net&platform=x86_64-pc-linux-gnux32": Unknown -47363/000/0001/R DF75B90361B454F1 0073/0073 2024-04-13T14:55:57.524904 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found -47363/000/0001/R DF75B90361B454F1 0074/0074 2024-04-13T14:55:57.524938 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 123: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -47363/000/0001/RE DF75B90361B454F1 0075/0075 2024-04-13T14:55:57.578276 ionos2-i386 UNK_CLIENT DF75B90361B454F1_0001SID aascan_unit_test request-stop 500 110.433376083 0 0 +30185/000/0001/RB AF2875E982861541 0003/0003 2025-05-18T00:13:40.781208 i-capture-the-hostname UNK_CLIENT UNK_SESSION aascan_unit_test request-start test_name=ScanOffsetTest&ncbi_app_version=2.12.0 +30185/000/0001/R AF2875E982861541 0004/0004 2025-05-18T00:13:40.781823 i-capture-the-hostname UNK_CLIENT UNK_SESSION aascan_unit_test extra ncbi_phid=AF2875E9828615410000000000010001 +30185/000/0001/R AF2875E982861541 0005/0005 2025-05-18T00:13:40.781865 i-capture-the-hostname UNK_CLIENT UNK_SESSION aascan_unit_test extra issued_subhit=1 +30185/000/0001/R AF2875E982861541 0006/0006 2025-05-18T00:13:40.783110 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test extra issued_subhit=2 +30185/000/0001/R AF2875E982861541 0007/0007 2025-05-18T00:13:40.783810 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4228: UNK_FUNC --- SSOCK#1000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +30185/000/0001/R AF2875E982861541 0008/0008 2025-05-18T00:13:40.783847 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2119: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=x86_64-pc-linux-gnux32] Failed to connect: Unknown +30185/000/0001/R AF2875E982861541 0009/0009 2025-05-18T00:13:40.783870 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=x86_64-pc-linux-gnux32": Unknown +30185/000/0001/R AF2875E982861541 0010/0010 2025-05-18T00:13:40.783889 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found +30185/000/0001/R AF2875E982861541 0011/0011 2025-05-18T00:13:40.783907 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 123: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown +30185/000/0001/R AF2875E982861541 0012/0012 2025-05-18T00:13:40.784287 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test extra issued_subhit=3 +30185/000/0001/R AF2875E982861541 0013/0013 2025-05-18T00:13:40.784661 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test extra issued_subhit=4 +30185/000/0001/R AF2875E982861541 0014/0014 2025-05-18T00:13:40.784789 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4228: UNK_FUNC --- SSOCK#2000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +30185/000/0001/R AF2875E982861541 0015/0015 2025-05-18T00:13:40.784815 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2119: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=x86_64-pc-linux-gnux32] Failed to connect: Unknown +30185/000/0001/R AF2875E982861541 0016/0016 2025-05-18T00:13:40.784845 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=x86_64-pc-linux-gnux32": Unknown +30185/000/0001/R AF2875E982861541 0017/0017 2025-05-18T00:13:40.784864 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found +30185/000/0001/R AF2875E982861541 0018/0018 2025-05-18T00:13:40.784881 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 123: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown +30185/000/0001/R AF2875E982861541 0019/0019 2025-05-18T00:13:40.784960 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test extra issued_subhit=5 +30185/000/0001/R AF2875E982861541 0020/0020 2025-05-18T00:13:41.785452 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test extra issued_subhit=6 +30185/000/0001/R AF2875E982861541 0021/0021 2025-05-18T00:13:41.785653 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4228: UNK_FUNC --- SSOCK#3000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +30185/000/0001/R AF2875E982861541 0022/0022 2025-05-18T00:13:41.785684 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2119: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=x86_64-pc-linux-gnux32] Failed to connect: Unknown +30185/000/0001/R AF2875E982861541 0023/0023 2025-05-18T00:13:41.785707 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=x86_64-pc-linux-gnux32": Unknown +30185/000/0001/R AF2875E982861541 0024/0024 2025-05-18T00:13:41.785726 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found +30185/000/0001/R AF2875E982861541 0025/0025 2025-05-18T00:13:41.785745 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 123: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown +30185/000/0001/R AF2875E982861541 0026/0026 2025-05-18T00:13:41.785912 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test extra issued_subhit=7 +30185/000/0001/R AF2875E982861541 0027/0027 2025-05-18T00:13:44.286436 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test extra issued_subhit=8 +30185/000/0001/R AF2875E982861541 0028/0028 2025-05-18T00:13:44.286628 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4228: UNK_FUNC --- SSOCK#4000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +30185/000/0001/R AF2875E982861541 0029/0029 2025-05-18T00:13:44.286659 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2119: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=x86_64-pc-linux-gnux32] Failed to connect: Unknown +30185/000/0001/R AF2875E982861541 0030/0030 2025-05-18T00:13:44.286694 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=x86_64-pc-linux-gnux32": Unknown +30185/000/0001/R AF2875E982861541 0031/0031 2025-05-18T00:13:44.286716 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found +30185/000/0001/R AF2875E982861541 0032/0032 2025-05-18T00:13:44.286734 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 123: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown +30185/000/0001/R AF2875E982861541 0033/0033 2025-05-18T00:13:44.286869 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test extra issued_subhit=9 +30185/000/0001/R AF2875E982861541 0034/0034 2025-05-18T00:13:49.037607 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test extra issued_subhit=10 +30185/000/0001/R AF2875E982861541 0035/0035 2025-05-18T00:13:49.037853 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4228: UNK_FUNC --- SSOCK#5000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +30185/000/0001/R AF2875E982861541 0036/0036 2025-05-18T00:13:49.037935 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2119: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=x86_64-pc-linux-gnux32] Failed to connect: Unknown +30185/000/0001/R AF2875E982861541 0037/0037 2025-05-18T00:13:49.037975 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=x86_64-pc-linux-gnux32": Unknown +30185/000/0001/R AF2875E982861541 0038/0038 2025-05-18T00:13:49.038007 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found +30185/000/0001/R AF2875E982861541 0039/0039 2025-05-18T00:13:49.038038 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 123: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown +30185/000/0001/R AF2875E982861541 0040/0040 2025-05-18T00:13:49.038995 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test extra issued_subhit=11 +30185/000/0001/R AF2875E982861541 0041/0041 2025-05-18T00:13:57.164770 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test extra issued_subhit=12 +30185/000/0001/R AF2875E982861541 0042/0042 2025-05-18T00:13:57.165054 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4228: UNK_FUNC --- SSOCK#6000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +30185/000/0001/R AF2875E982861541 0043/0043 2025-05-18T00:13:57.165101 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2119: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=x86_64-pc-linux-gnux32] Failed to connect: Unknown +30185/000/0001/R AF2875E982861541 0044/0044 2025-05-18T00:13:57.165161 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=x86_64-pc-linux-gnux32": Unknown +30185/000/0001/R AF2875E982861541 0045/0045 2025-05-18T00:13:57.165196 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found +30185/000/0001/R AF2875E982861541 0046/0046 2025-05-18T00:13:57.165228 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 123: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown +30185/000/0001/R AF2875E982861541 0047/0047 2025-05-18T00:13:57.165438 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test extra issued_subhit=13 +30185/000/0001/R AF2875E982861541 0048/0048 2025-05-18T00:14:10.353470 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test extra issued_subhit=14 +30185/000/0001/R AF2875E982861541 0049/0049 2025-05-18T00:14:10.353683 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4228: UNK_FUNC --- SSOCK#7000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +30185/000/0001/R AF2875E982861541 0050/0050 2025-05-18T00:14:10.353714 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2119: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=x86_64-pc-linux-gnux32] Failed to connect: Unknown +30185/000/0001/R AF2875E982861541 0051/0051 2025-05-18T00:14:10.353737 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=x86_64-pc-linux-gnux32": Unknown +30185/000/0001/R AF2875E982861541 0052/0052 2025-05-18T00:14:10.353756 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found +30185/000/0001/R AF2875E982861541 0053/0053 2025-05-18T00:14:10.353775 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 123: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown +30185/000/0001/R AF2875E982861541 0054/0054 2025-05-18T00:14:10.353973 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test extra issued_subhit=15 +30185/000/0001/R AF2875E982861541 0055/0055 2025-05-18T00:14:31.135756 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test extra issued_subhit=16 +30185/000/0001/R AF2875E982861541 0056/0056 2025-05-18T00:14:31.136020 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4228: UNK_FUNC --- SSOCK#8000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +30185/000/0001/R AF2875E982861541 0057/0057 2025-05-18T00:14:31.136056 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2119: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=x86_64-pc-linux-gnux32] Failed to connect: Unknown +30185/000/0001/R AF2875E982861541 0058/0058 2025-05-18T00:14:31.136092 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=x86_64-pc-linux-gnux32": Unknown +30185/000/0001/R AF2875E982861541 0059/0059 2025-05-18T00:14:31.136114 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found +30185/000/0001/R AF2875E982861541 0060/0060 2025-05-18T00:14:31.136133 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 123: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown +30185/000/0001/R AF2875E982861541 0061/0061 2025-05-18T00:14:31.136345 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test extra issued_subhit=17 +30185/000/0001/R AF2875E982861541 0062/0062 2025-05-18T00:15:01.136883 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test extra issued_subhit=18 +30185/000/0001/R AF2875E982861541 0063/0063 2025-05-18T00:15:01.137134 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4228: UNK_FUNC --- SSOCK#9000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +30185/000/0001/R AF2875E982861541 0064/0064 2025-05-18T00:15:01.137177 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2119: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=x86_64-pc-linux-gnux32] Failed to connect: Unknown +30185/000/0001/R AF2875E982861541 0065/0065 2025-05-18T00:15:01.137202 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=x86_64-pc-linux-gnux32": Unknown +30185/000/0001/R AF2875E982861541 0066/0066 2025-05-18T00:15:01.137222 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found +30185/000/0001/R AF2875E982861541 0067/0067 2025-05-18T00:15:01.137241 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 123: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown +30185/000/0001/R AF2875E982861541 0068/0068 2025-05-18T00:15:01.137408 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test extra issued_subhit=19 +30185/000/0001/R AF2875E982861541 0069/0069 2025-05-18T00:15:31.138093 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test extra issued_subhit=20 +30185/000/0001/R AF2875E982861541 0070/0070 2025-05-18T00:15:31.138359 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4228: UNK_FUNC --- SSOCK#10000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +30185/000/0001/R AF2875E982861541 0071/0071 2025-05-18T00:15:31.138392 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2119: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=x86_64-pc-linux-gnux32] Failed to connect: Unknown +30185/000/0001/R AF2875E982861541 0072/0072 2025-05-18T00:15:31.138438 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=x86_64-pc-linux-gnux32": Unknown +30185/000/0001/R AF2875E982861541 0073/0073 2025-05-18T00:15:31.138460 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found +30185/000/0001/R AF2875E982861541 0074/0074 2025-05-18T00:15:31.138479 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 123: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown +30185/000/0001/RE AF2875E982861541 0075/0075 2025-05-18T00:15:31.142319 i-capture-the-hostname UNK_CLIENT AF2875E982861541_0001SID aascan_unit_test request-stop 500 110.361101975 0 0 unknown location(0): fatal error: in "aascan/ScanOffsetTest": ncbi::objects::CLoaderException: NCBI C++ Exception: Error: CORELIB(CLoaderException::eConnectionFailed) "c++/include/corelib/ncbidiag.hpp", line 254: ncbi::objects::CId2Reader::x_ConnectAtSlot() --- cannot open connection: ID2 Error: CORELIB(CLoaderException::eConnectionFailed) "c++/include/corelib/ncbidiag.hpp", line 1840: ncbi::objects::CId2ReaderBase::x_SendID2Packet() --- failed to send request: NULL ./c++/src/algo/blast/unit_tests/api/aascan_unit_test.cpp(251): last checkpoint: "ScanOffsetTest" fixture entry. -47363/000/0002/RB DF75B90361B454F1 0078/0078 2024-04-13T14:55:57.579263 ionos2-i386 UNK_CLIENT UNK_SESSION aascan_unit_test request-start test_name=ScanMaxHitsTest&ncbi_app_version=2.12.0 -47363/000/0002/R DF75B90361B454F1 0079/0079 2024-04-13T14:55:57.579405 ionos2-i386 UNK_CLIENT UNK_SESSION aascan_unit_test extra ncbi_phid=DF75B90361B454F10000000000020002 -47363/000/0002/R DF75B90361B454F1 0080/0080 2024-04-13T14:55:57.579434 ionos2-i386 UNK_CLIENT UNK_SESSION aascan_unit_test extra issued_subhit=1 -47363/000/0002/R DF75B90361B454F1 0081/0081 2024-04-13T14:56:27.580348 ionos2-i386 UNK_CLIENT DF75B90361B45DB1_0002SID aascan_unit_test extra issued_subhit=2 -47363/000/0002/R DF75B90361B454F1 0082/0082 2024-04-13T14:56:27.580661 ionos2-i386 UNK_CLIENT DF75B90361B45DB1_0002SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4228: UNK_FUNC --- SSOCK#11000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -47363/000/0002/R DF75B90361B454F1 0083/0083 2024-04-13T14:56:27.580700 ionos2-i386 UNK_CLIENT DF75B90361B45DB1_0002SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2119: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=ionos2-i386.debian.net&platform=x86_64-pc-linux-gnux32] Failed to connect: Unknown -47363/000/0002/R DF75B90361B454F1 0084/0084 2024-04-13T14:56:27.580735 ionos2-i386 UNK_CLIENT DF75B90361B45DB1_0002SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=ionos2-i386.debian.net&platform=x86_64-pc-linux-gnux32": Unknown -47363/000/0002/R DF75B90361B454F1 0085/0085 2024-04-13T14:56:27.580768 ionos2-i386 UNK_CLIENT DF75B90361B45DB1_0002SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found -47363/000/0002/R DF75B90361B454F1 0086/0086 2024-04-13T14:56:27.580798 ionos2-i386 UNK_CLIENT DF75B90361B45DB1_0002SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 123: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -47363/000/0002/R DF75B90361B454F1 0087/0087 2024-04-13T14:56:27.581005 ionos2-i386 UNK_CLIENT DF75B90361B45DB1_0002SID aascan_unit_test extra issued_subhit=3 -47363/000/0002/R DF75B90361B454F1 0088/0088 2024-04-13T14:56:57.582020 ionos2-i386 UNK_CLIENT DF75B90361B45DB1_0002SID aascan_unit_test extra issued_subhit=4 -47363/000/0002/R DF75B90361B454F1 0089/0089 2024-04-13T14:56:57.582324 ionos2-i386 UNK_CLIENT DF75B90361B45DB1_0002SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4228: UNK_FUNC --- SSOCK#12000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") -47363/000/0002/R DF75B90361B454F1 0090/0090 2024-04-13T14:56:57.582404 ionos2-i386 UNK_CLIENT DF75B90361B45DB1_0002SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2119: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=ionos2-i386.debian.net&platform=x86_64-pc-linux-gnux32] Failed to connect: Unknown -47363/000/0002/R DF75B90361B454F1 0091/0091 2024-04-13T14:56:57.582458 ionos2-i386 UNK_CLIENT DF75B90361B45DB1_0002SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=ionos2-i386.debian.net&platform=x86_64-pc-linux-gnux32": Unknown -47363/000/0002/R DF75B90361B454F1 0092/0092 2024-04-13T14:56:57.582490 ionos2-i386 UNK_CLIENT DF75B90361B45DB1_0002SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found -47363/000/0002/R DF75B90361B454F1 0093/0093 2024-04-13T14:56:57.582520 ionos2-i386 UNK_CLIENT DF75B90361B45DB1_0002SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 123: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown -47363/000/0002/R DF75B90361B454F1 0094/0094 2024-04-13T14:56:57.582769 ionos2-i386 UNK_CLIENT DF75B90361B45DB1_0002SID aascan_unit_test extra issued_subhit=5 +30185/000/0002/RB AF2875E982861541 0078/0078 2025-05-18T00:15:31.143118 i-capture-the-hostname UNK_CLIENT UNK_SESSION aascan_unit_test request-start test_name=ScanMaxHitsTest&ncbi_app_version=2.12.0 +30185/000/0002/R AF2875E982861541 0079/0079 2025-05-18T00:15:31.143230 i-capture-the-hostname UNK_CLIENT UNK_SESSION aascan_unit_test extra ncbi_phid=AF2875E9828615410000000000020002 +30185/000/0002/R AF2875E982861541 0080/0080 2025-05-18T00:15:31.143250 i-capture-the-hostname UNK_CLIENT UNK_SESSION aascan_unit_test extra issued_subhit=1 +30185/000/0002/R AF2875E982861541 0081/0081 2025-05-18T00:16:01.144356 i-capture-the-hostname UNK_CLIENT AF2875E982861E11_0002SID aascan_unit_test extra issued_subhit=2 +30185/000/0002/R AF2875E982861541 0082/0082 2025-05-18T00:16:01.144657 i-capture-the-hostname UNK_CLIENT AF2875E982861E11_0002SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4228: UNK_FUNC --- SSOCK#11000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +30185/000/0002/R AF2875E982861541 0083/0083 2025-05-18T00:16:01.144697 i-capture-the-hostname UNK_CLIENT AF2875E982861E11_0002SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2119: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=x86_64-pc-linux-gnux32] Failed to connect: Unknown +30185/000/0002/R AF2875E982861541 0084/0084 2025-05-18T00:16:01.144721 i-capture-the-hostname UNK_CLIENT AF2875E982861E11_0002SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=x86_64-pc-linux-gnux32": Unknown +30185/000/0002/R AF2875E982861541 0085/0085 2025-05-18T00:16:01.144745 i-capture-the-hostname UNK_CLIENT AF2875E982861E11_0002SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found +30185/000/0002/R AF2875E982861541 0086/0086 2025-05-18T00:16:01.144780 i-capture-the-hostname UNK_CLIENT AF2875E982861E11_0002SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 123: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown +30185/000/0002/R AF2875E982861541 0087/0087 2025-05-18T00:16:01.145178 i-capture-the-hostname UNK_CLIENT AF2875E982861E11_0002SID aascan_unit_test extra issued_subhit=3 +30185/000/0002/R AF2875E982861541 0088/0088 2025-05-18T00:16:31.145987 i-capture-the-hostname UNK_CLIENT AF2875E982861E11_0002SID aascan_unit_test extra issued_subhit=4 +30185/000/0002/R AF2875E982861541 0089/0089 2025-05-18T00:16:31.146260 i-capture-the-hostname UNK_CLIENT AF2875E982861E11_0002SID aascan_unit_test Error: CONNECT(302.22) "ncbi_priv.h", line 4228: UNK_FUNC --- SSOCK#12000[?]@:443: [SOCK::Connect] Failed SOCK_gethostbyname("www.ncbi.nlm.nih.gov") +30185/000/0002/R AF2875E982861541 0090/0090 2025-05-18T00:16:31.146302 i-capture-the-hostname UNK_CLIENT AF2875E982861E11_0002SID aascan_unit_test Error: CONNECT(303.7) "ncbi_priv.h", line 2119: UNK_FUNC --- [URL_Connect; https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=x86_64-pc-linux-gnux32] Failed to connect: Unknown +30185/000/0002/R AF2875E982861541 0091/0091 2025-05-18T00:16:31.146325 i-capture-the-hostname UNK_CLIENT AF2875E982861E11_0002SID aascan_unit_test Error: CONNECT(304.5) "ncbi_priv.h", line 205: UNK_FUNC --- [ID2] Unable to create connection with network dispatcher at "https://www.ncbi.nlm.nih.gov/Service/dispd.cgi?service=ID2&address=i-capture-the-hostname(127.0.1.1)&platform=x86_64-pc-linux-gnux32": Unknown +30185/000/0002/R AF2875E982861541 0092/0092 2025-05-18T00:16:31.146351 i-capture-the-hostname UNK_CLIENT AF2875E982861E11_0002SID aascan_unit_test Error: CONNECT(308.5) "ncbi_priv.h", line 102: UNK_FUNC --- [ID2] Service not found +30185/000/0002/R AF2875E982861541 0093/0093 2025-05-18T00:16:31.146370 i-capture-the-hostname UNK_CLIENT AF2875E982861E11_0002SID aascan_unit_test Error: CORELIB(315.2) "ncbidiag.hpp", line 123: ncbi::CConn_Streambuf::CConn_Streambuf() --- [CConn_Streambuf::CConn_Streambuf()] NULL connector: Unknown +30185/000/0002/R AF2875E982861541 0094/0094 2025-05-18T00:16:31.146604 i-capture-the-hostname UNK_CLIENT AF2875E982861E11_0002SID aascan_unit_test extra issued_subhit=5 Maximum execution time of 200 second(s) is exceeded -real 200.32 -user 0.17 +real 200.13 +user 0.12 sys 0.06 -Start time : 04/13/2024 14:54:07 -Stop time : 04/13/2024 14:57:27 -Load averages: 12.91 14.52 19.12 +Start time : 05/18/2025 00:13:40 +Stop time : 05/18/2025 00:17:00 +Load averages: 1.30 12.87 23.53 @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ @@@ EXIT CODE: 143 @@ -73700,9 +73732,9 @@ dh_gencontrol -O--sourcedirectory=c\+\+ dh_md5sums -O--sourcedirectory=c\+\+ dh_builddeb -O--sourcedirectory=c\+\+ -dpkg-deb: building package 'ncbi-blast+' in '../ncbi-blast+_2.12.0+ds-4_i386.deb'. dpkg-deb: building package 'ncbi-blast+-legacy' in '../ncbi-blast+-legacy_2.12.0+ds-4_all.deb'. dpkg-deb: building package 'ncbi-blast+-dbgsym' in '../ncbi-blast+-dbgsym_2.12.0+ds-4_i386.deb'. +dpkg-deb: building package 'ncbi-blast+' in '../ncbi-blast+_2.12.0+ds-4_i386.deb'. dpkg-genbuildinfo --build=binary -O../ncbi-blast+_2.12.0+ds-4_i386.buildinfo dpkg-genchanges --build=binary -O../ncbi-blast+_2.12.0+ds-4_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -73711,12 +73743,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/20265/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/20265/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/54539 and its subdirectories -I: Current time: Sat Apr 13 15:04:28 -12 2024 -I: pbuilder-time-stamp: 1713063868 +I: removing directory /srv/workspace/pbuilder/20265 and its subdirectories +I: Current time: Sun May 18 00:19:40 +14 2025 +I: pbuilder-time-stamp: 1747477180