Diff of the two buildlogs: -- --- b1/build.log 2024-04-16 20:53:49.111055223 +0000 +++ b2/build.log 2024-04-16 20:56:25.780402754 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon May 19 15:15:19 -12 2025 -I: pbuilder-time-stamp: 1747710919 +I: Current time: Wed Apr 17 10:53:52 +14 2024 +I: pbuilder-time-stamp: 1713300832 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -41,54 +41,86 @@ dpkg-source: info: applying gnuplot.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/11956/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/41771/tmp/hooks/D01_modify_environment starting +debug: Running on ionos2-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 16 20:54 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/41771/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/41771/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=10 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='66f9a96ff43b4683b0d0841b358af731' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='11956' - PS1='# ' - PS2='> ' + INVOCATION_ID=7927f0d0ea7641de8a54afb614949744 + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=41771 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.VdY0pCns/pbuilderrc_OMTL --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.VdY0pCns/b1 --logfile b1/build.log mummer_3.23+dfsg-8.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.VdY0pCns/pbuilderrc_wF2R --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.VdY0pCns/b2 --logfile b2/build.log mummer_3.23+dfsg-8.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux ionos6-i386 6.1.0-20-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-20-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 17 17:48 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/11956/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Apr 16 11:24 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/41771/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -210,7 +242,7 @@ Get: 78 http://deb.debian.org/debian trixie/main i386 texlive-fonts-recommended all 2023.20240207-1 [4990 kB] Get: 79 http://deb.debian.org/debian trixie/main i386 texlive-latex-base all 2023.20240207-1 [1255 kB] Get: 80 http://deb.debian.org/debian trixie/main i386 texlive-latex-recommended all 2023.20240207-1 [8843 kB] -Fetched 81.1 MB in 1s (97.6 MB/s) +Fetched 81.1 MB in 1s (71.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19874 files and directories currently installed.) @@ -564,7 +596,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/mummer-3.23+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mummer_3.23+dfsg-8_source.changes +I: user script /srv/workspace/pbuilder/41771/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/41771/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/mummer-3.23+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../mummer_3.23+dfsg-8_source.changes dpkg-buildpackage: info: source package mummer dpkg-buildpackage: info: source version 3.23+dfsg-8 dpkg-buildpackage: info: source distribution unstable @@ -574,7 +610,7 @@ debian/rules clean dh clean dh_auto_clean - make -j22 clean + make -j10 clean make[1]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg' rm -f *~ core* cd /build/reproducible-path/mummer-3.23+dfsg/src/kurtz; make clean @@ -627,7 +663,7 @@ FINAL_BIN_DIR=/usr/bin FINAL_AUX_BIN_DIR=/usr/lib/mummer \ FINAL_SCRIPT_DIR=/usr/share/perl5/ \ CFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" - make -j22 "INSTALL=install --strip-program=true" BIN_DIR=/build/reproducible-path/mummer-3.23\+dfsg/debian/tmp/usr/bin AUX_BIN_DIR=/build/reproducible-path/mummer-3.23\+dfsg/debian/tmp/usr/lib/mummer FINAL_BIN_DIR=/usr/bin FINAL_AUX_BIN_DIR=/usr/lib/mummer FINAL_SCRIPT_DIR=/usr/share/perl5/ "CFLAGS=-g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc" "CXXFLAGS=-g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security" "LDFLAGS=-Wl,-z,relro -Wl,-z,now" + make -j10 "INSTALL=install --strip-program=true" BIN_DIR=/build/reproducible-path/mummer-3.23\+dfsg/debian/tmp/usr/bin AUX_BIN_DIR=/build/reproducible-path/mummer-3.23\+dfsg/debian/tmp/usr/lib/mummer FINAL_BIN_DIR=/usr/bin FINAL_AUX_BIN_DIR=/usr/lib/mummer FINAL_SCRIPT_DIR=/usr/share/perl5/ "CFLAGS=-g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc" "CXXFLAGS=-g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security" "LDFLAGS=-Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg' cd /build/reproducible-path/mummer-3.23+dfsg/src/kurtz; make mummer cd /build/reproducible-path/mummer-3.23+dfsg/src/tigr; make CFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" all @@ -638,53 +674,53 @@ make[3]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/tigr' /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 tigrinc.cc -c -o tigrinc.o /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 delta.cc -c -o delta.o -make[4]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir' -/usr/bin/gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cleanMUMcand.o cleanMUMcand.c /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 sw_align.cc -c -o sw_align.o -/usr/bin/gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o clock.o clock.c cp -a ../debian/sh-replacement-scripts/exact-tandems /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin -/usr/bin/gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mapfile.o mapfile.c +make[4]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir' +/usr/bin/gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cleanMUMcand.o cleanMUMcand.c /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 translate.cc -c -o translate.o /usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ mapview.pl > /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mapview -/usr/bin/gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o multiseq.o multiseq.c +/usr/bin/gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o clock.o clock.c +/usr/bin/gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mapfile.o mapfile.c /usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ -e 's?__BIN_DIR?/usr/bin?g' \ mummerplot.pl > /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mummerplot -/usr/bin/gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o procopt.o procopt.c -/usr/bin/gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o safescpy.o safescpy.c chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/exact-tandems /usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ -e 's?__AUX_BIN_DIR?/usr/lib/mummer?g' \ -e 's?__BIN_DIR?/usr/bin?g' \ nucmer.pl > /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/nucmer -/usr/bin/gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o seterror.o seterror.c -/usr/bin/gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o space.o space.c +chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/nucmer /usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ -e 's?__AUX_BIN_DIR?/usr/lib/mummer?g' \ -e 's?__BIN_DIR?/usr/bin?g' \ promer.pl > /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/promer -chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mapview chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mummerplot -chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/nucmer cp -a ../debian/sh-replacement-scripts/run-mummer1 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/promer cp -a ../debian/sh-replacement-scripts/run-mummer3 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin -chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/run-mummer1 +chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/run-mummer3 /usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ nucmer2xfig.pl > /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/nucmer2xfig -chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/run-mummer3 +chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/run-mummer1 +chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/nucmer2xfig /usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ -e 's?__BIN_DIR?/usr/bin?g' \ dnadiff.pl > /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/dnadiff -chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/nucmer2xfig +/usr/bin/gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o multiseq.o multiseq.c +chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mapview +/usr/bin/gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o procopt.o procopt.c chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/dnadiff make[3]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/scripts' +/usr/bin/gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o safescpy.o safescpy.c +/usr/bin/gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o seterror.o seterror.c +/usr/bin/gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o space.o space.c ar sruv libbase.a cleanMUMcand.o clock.o mapfile.o multiseq.o procopt.o safescpy.o seterror.o space.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating libbase.a @@ -710,6 +746,14 @@ /usr/bin/gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o oversucc.o oversucc.c /usr/bin/gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o addleafcount.o addleafcount.c /usr/bin/gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o iterator.o iterator.c +tigrinc.cc: In function 'int Read_String(FILE*, char*&, long int&, char*, int)': +tigrinc.cc:335:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 335 | fgets (Line, MAX_LINE, fp); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~ +tigrinc.cc: In function 'int Read_File(FILE*, long int&, std::map, char*>&, int)': +tigrinc.cc:452:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 452 | fgets (Line, MAX_LINE, fp); + | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ar sruv libstree.a construct.o access.o scanpref.o linkloc.o depthtab.o ex2leav.o dfs.o overmax.o oversucc.o addleafcount.o iterator.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating libstree.a @@ -733,14 +777,6 @@ /usr/bin/gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o findmumcand.o findmumcand.c /usr/bin/gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o findmaxmat.o findmaxmat.c /usr/bin/gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o procmaxmat.o procmaxmat.c -tigrinc.cc: In function 'int Read_String(FILE*, char*&, long int&, char*, int)': -tigrinc.cc:335:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 335 | fgets (Line, MAX_LINE, fp); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~ -tigrinc.cc: In function 'int Read_File(FILE*, long int&, std::map, char*>&, int)': -tigrinc.cc:452:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 452 | fgets (Line, MAX_LINE, fp); - | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/bin/gcc -Wl,-z,relro -Wl,-z,now maxmat3.o maxmatopt.o maxmatinp.o findmumcand.o findmaxmat.o procmaxmat.o ../streesrc/libstree.a ../libbasedir/libbase.a \ -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mummer; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mummer make[4]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/mm3src' @@ -754,6 +790,14 @@ /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now prenuc.cc tigrinc.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/prenuc; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/prenuc /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now prepro.cc tigrinc.o translate.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/prepro; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/prepro /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now repeat-match.cc tigrinc.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/repeat-match; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/repeat-match +mgaps.cc: In function 'int Process_Cluster(Match_t*, int, char*)': +mgaps.cc:533:20: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] + 533 | label = "#\n"; + | ^~~~~ +mgaps.cc: In function 'void Process_Matches(Match_t*, int, char*)': +mgaps.cc:620:19: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] + 620 | label = "#\n"; + | ^~~~~ combineMUMs.cc:26:38: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 26 | #define DEFAULT_ERROR_FILE_NAME "witherrors.gaps" | ^~~~~~~~~~~~~~~~~ @@ -766,14 +810,6 @@ combineMUMs.cc:145:22: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 145 | char * Ref_Suffix = "Ref"; | ^~~~~ -mgaps.cc: In function 'int Process_Cluster(Match_t*, int, char*)': -mgaps.cc:533:20: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] - 533 | label = "#\n"; - | ^~~~~ -mgaps.cc: In function 'void Process_Matches(Match_t*, int, char*)': -mgaps.cc:620:19: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] - 620 | label = "#\n"; - | ^~~~~ combineMUMs.cc: In function 'int Read_String(FILE*, char**, long int*, char*)': combineMUMs.cc:1481:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1481 | fgets (Line, MAX_LINE, fp); @@ -786,6 +822,16 @@ /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now show-diff.cc tigrinc.o delta.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-diff; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-diff /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now delta2blocks.cc tigrinc.o translate.o delta.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/delta2blocks; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/delta2blocks /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now delta2maf.cc tigrinc.o translate.o delta.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/delta2maf; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/delta2maf +show-coords.cc: In function 'void printBtab(std::vector)': +show-coords.cc:799:12: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] + 799 | type = "NUCMER"; + | ^~~~~~~~ +show-coords.cc:801:12: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] + 801 | type = "PROMER"; + | ^~~~~~~~ +show-coords.cc:803:12: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] + 803 | type = "NULL"; + | ^~~~~~ delta2blocks.cc: In function 'void printAlignments(std::vector, char*, char*, char*, char*)': delta2blocks.cc:408:23: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long int' [-Wformat=] 408 | printf ("%s %s %d %d %d %d ",IdR,IdQ, Ap->sR,Ap->eR,Ap->sQ,Ap->eQ); @@ -811,16 +857,6 @@ | | | | int long int | %ld -show-coords.cc: In function 'void printBtab(std::vector)': -show-coords.cc:799:12: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] - 799 | type = "NUCMER"; - | ^~~~~~~~ -show-coords.cc:801:12: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] - 801 | type = "PROMER"; - | ^~~~~~~~ -show-coords.cc:803:12: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] - 803 | type = "NULL"; - | ^~~~~~ delta2maf.cc: In function 'void printAlignments(std::vector, char*, char*, std::map, char*>&)': delta2maf.cc:547:24: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long int' [-Wformat=] 547 | printf("a score=%d\n",abs(Ap->eR - Ap->sR)); @@ -1131,7 +1167,7 @@ make[2]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/docs' make[1]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg' dh_auto_test - make -j22 check + make -j10 check make[1]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg' check complete make[1]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg' @@ -1167,9 +1203,9 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'mummer' in '../mummer_3.23+dfsg-8_i386.deb'. dpkg-deb: building package 'mummer-dbgsym' in '../mummer-dbgsym_3.23+dfsg-8_i386.deb'. dpkg-deb: building package 'mummer-doc' in '../mummer-doc_3.23+dfsg-8_all.deb'. +dpkg-deb: building package 'mummer' in '../mummer_3.23+dfsg-8_i386.deb'. dpkg-genbuildinfo --build=binary -O../mummer_3.23+dfsg-8_i386.buildinfo dpkg-genchanges --build=binary -O../mummer_3.23+dfsg-8_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1177,12 +1213,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/41771/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/41771/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/11956 and its subdirectories -I: Current time: Mon May 19 15:16:48 -12 2025 -I: pbuilder-time-stamp: 1747711008 +I: removing directory /srv/workspace/pbuilder/41771 and its subdirectories +I: Current time: Wed Apr 17 10:56:25 +14 2024 +I: pbuilder-time-stamp: 1713300985