Diff of the two buildlogs:
--
--- b1/build.log 2025-02-22 21:32:08.925629489 +0000
+++ b2/build.log 2025-02-22 21:34:02.756481038 +0000
@@ -1,6 +1,6 @@
I: pbuilder: network access will be disabled during build
-I: Current time: Sat Feb 22 09:29:16 -12 2025
-I: pbuilder-time-stamp: 1740259756
+I: Current time: Sat Mar 28 17:55:10 +14 2026
+I: pbuilder-time-stamp: 1774670110
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz]
I: copying local configuration
@@ -28,54 +28,86 @@
dpkg-source: info: applying remove_undeclared_pkg_resources.patch
I: Not using root during the build.
I: Installing the build-deps
-I: user script /srv/workspace/pbuilder/60061/tmp/hooks/D02_print_environment starting
+I: user script /srv/workspace/pbuilder/87819/tmp/hooks/D01_modify_environment starting
+debug: Running on ionos6-i386.
+I: Changing host+domainname to test build reproducibility
+I: Adding a custom variable just for the fun of it...
+I: Changing /bin/sh to bash
+'/bin/sh' -> '/bin/bash'
+lrwxrwxrwx 1 root root 9 Mar 28 03:55 /bin/sh -> /bin/bash
+I: Setting pbuilder2's login shell to /bin/bash
+I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
+I: user script /srv/workspace/pbuilder/87819/tmp/hooks/D01_modify_environment finished
+I: user script /srv/workspace/pbuilder/87819/tmp/hooks/D02_print_environment starting
I: set
- BUILDDIR='/build/reproducible-path'
- BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
- BUILDUSERNAME='pbuilder1'
- BUILD_ARCH='i386'
- DEBIAN_FRONTEND='noninteractive'
- DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 '
- DISTRIBUTION='trixie'
- HOME='/root'
- HOST_ARCH='i386'
+ BASH=/bin/sh
+ BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
+ BASH_ALIASES=()
+ BASH_ARGC=()
+ BASH_ARGV=()
+ BASH_CMDS=()
+ BASH_LINENO=([0]="12" [1]="0")
+ BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
+ BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
+ BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="i686-pc-linux-gnu")
+ BASH_VERSION='5.2.37(1)-release'
+ BUILDDIR=/build/reproducible-path
+ BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
+ BUILDUSERNAME=pbuilder2
+ BUILD_ARCH=i386
+ DEBIAN_FRONTEND=noninteractive
+ DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=21 '
+ DIRSTACK=()
+ DISTRIBUTION=trixie
+ EUID=0
+ FUNCNAME=([0]="Echo" [1]="main")
+ GROUPS=()
+ HOME=/root
+ HOSTNAME=i-capture-the-hostname
+ HOSTTYPE=i686
+ HOST_ARCH=i386
IFS='
'
- INVOCATION_ID='dc075d76970e4ca9a0ba82c2940def40'
- LANG='C'
- LANGUAGE='en_US:en'
- LC_ALL='C'
- LD_LIBRARY_PATH='/usr/lib/libeatmydata'
- LD_PRELOAD='libeatmydata.so'
- MAIL='/var/mail/root'
- OPTIND='1'
- PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
- PBCURRENTCOMMANDLINEOPERATION='build'
- PBUILDER_OPERATION='build'
- PBUILDER_PKGDATADIR='/usr/share/pbuilder'
- PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
- PBUILDER_SYSCONFDIR='/etc'
- PPID='60061'
- PS1='# '
- PS2='> '
+ INVOCATION_ID=be1340b32c8744c3a033c6a39ce51420
+ LANG=C
+ LANGUAGE=de_CH:de
+ LC_ALL=C
+ LD_LIBRARY_PATH=/usr/lib/libeatmydata
+ LD_PRELOAD=libeatmydata.so
+ MACHTYPE=i686-pc-linux-gnu
+ MAIL=/var/mail/root
+ OPTERR=1
+ OPTIND=1
+ OSTYPE=linux-gnu
+ PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
+ PBCURRENTCOMMANDLINEOPERATION=build
+ PBUILDER_OPERATION=build
+ PBUILDER_PKGDATADIR=/usr/share/pbuilder
+ PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
+ PBUILDER_SYSCONFDIR=/etc
+ PIPESTATUS=([0]="0")
+ POSIXLY_CORRECT=y
+ PPID=87819
PS4='+ '
- PWD='/'
- SHELL='/bin/bash'
- SHLVL='2'
- SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.cSg1Fdd7/pbuilderrc_YyAD --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.cSg1Fdd7/b1 --logfile b1/build.log mirtop_0.4.28-3.dsc'
- SUDO_GID='112'
- SUDO_UID='107'
- SUDO_USER='jenkins'
- TERM='unknown'
- TZ='/usr/share/zoneinfo/Etc/GMT+12'
- USER='root'
- _='/usr/bin/systemd-run'
- http_proxy='http://46.16.76.132:3128'
+ PWD=/
+ SHELL=/bin/bash
+ SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
+ SHLVL=3
+ SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.cSg1Fdd7/pbuilderrc_5ZkP --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.cSg1Fdd7/b2 --logfile b2/build.log mirtop_0.4.28-3.dsc'
+ SUDO_GID=112
+ SUDO_UID=107
+ SUDO_USER=jenkins
+ TERM=unknown
+ TZ=/usr/share/zoneinfo/Etc/GMT-14
+ UID=0
+ USER=root
+ _='I: set'
+ http_proxy=http://213.165.73.152:3128
I: uname -a
- Linux ionos2-i386 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux
+ Linux i-capture-the-hostname 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux
I: ls -l /bin
- lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin
-I: user script /srv/workspace/pbuilder/60061/tmp/hooks/D02_print_environment finished
+ lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin
+I: user script /srv/workspace/pbuilder/87819/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
@@ -88,7 +120,7 @@
Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-setuptools, python3-six, python3-sphinx, python3-recommonmark, python3-pysam, python3-pybedtools, python3-pandas, python3-biopython
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
-(Reading database ... 19794 files and directories currently installed.)
+(Reading database ... 19844 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
@@ -308,10 +340,10 @@
Get: 175 http://deb.debian.org/debian trixie/main i386 python3-sphinx all 8.1.3-4 [468 kB]
Get: 176 http://deb.debian.org/debian trixie/main i386 python3-recommonmark all 0.7.1+ds-8 [17.6 kB]
Get: 177 http://deb.debian.org/debian trixie/main i386 python3-six all 1.17.0-1 [16.5 kB]
-Fetched 111 MB in 4s (27.2 MB/s)
+Fetched 111 MB in 1s (104 MB/s)
Preconfiguring packages ...
Selecting previously unselected package libpython3.13-minimal:i386.
-(Reading database ...
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+(Reading database ...
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(Reading database ... 19844 files and directories currently installed.)
Preparing to unpack .../libpython3.13-minimal_3.13.2-1_i386.deb ...
Unpacking libpython3.13-minimal:i386 (3.13.2-1) ...
Selecting previously unselected package libexpat1:i386.
@@ -324,7 +356,7 @@
Setting up libexpat1:i386 (2.6.4-1) ...
Setting up python3.13-minimal (3.13.2-1) ...
Selecting previously unselected package python3-minimal.
-(Reading database ...
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(Reading database ... 20128 files and directories currently installed.)
+(Reading database ...
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(Reading database ... 20178 files and directories currently installed.)
Preparing to unpack .../0-python3-minimal_3.13.1-2_i386.deb ...
Unpacking python3-minimal (3.13.1-2) ...
Selecting previously unselected package media-types.
@@ -360,7 +392,7 @@
Unpacking libpython3-stdlib:i386 (3.13.1-2) ...
Setting up python3-minimal (3.13.1-2) ...
Selecting previously unselected package python3.
-(Reading database ...
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 21138 files and directories currently installed.)
+(Reading database ...
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(Reading database ... 21188 files and directories currently installed.)
Preparing to unpack .../000-python3_3.13.1-2_i386.deb ...
Unpacking python3 (3.13.1-2) ...
Selecting previously unselected package libpython3.12-minimal:i386.
@@ -894,8 +926,8 @@
Setting up tzdata (2025a-2) ...
Current default time zone: 'Etc/UTC'
-Local time is now: Sat Feb 22 21:29:58 UTC 2025.
-Universal Time is now: Sat Feb 22 21:29:58 UTC 2025.
+Local time is now: Sat Mar 28 03:55:37 UTC 2026.
+Universal Time is now: Sat Mar 28 03:55:37 UTC 2026.
Run 'dpkg-reconfigure tzdata' if you wish to change it.
Setting up libfontenc1:i386 (1:1.1.8-1+b2) ...
@@ -1060,7 +1092,11 @@
Building tag database...
-> Finished parsing the build-deps
I: Building the package
-I: Running cd /build/reproducible-path/mirtop-0.4.28/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mirtop_0.4.28-3_source.changes
+I: user script /srv/workspace/pbuilder/87819/tmp/hooks/A99_set_merged_usr starting
+Not re-configuring usrmerge for trixie
+I: user script /srv/workspace/pbuilder/87819/tmp/hooks/A99_set_merged_usr finished
+hostname: Name or service not known
+I: Running cd /build/reproducible-path/mirtop-0.4.28/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../mirtop_0.4.28-3_source.changes
dpkg-buildpackage: info: source package mirtop
dpkg-buildpackage: info: source version 0.4.28-3
dpkg-buildpackage: info: source distribution unstable
@@ -1124,67 +1160,67 @@
running build
running build_py
creating /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop
-copying mirtop/version.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop
-copying mirtop/install.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop
copying mirtop/command_line.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop
+copying mirtop/version.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop
copying mirtop/__init__.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop
+copying mirtop/install.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop
+creating /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna
+copying mirtop/mirna/fasta.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna
+copying mirtop/mirna/mapper.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna
+copying mirtop/mirna/keys.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna
+copying mirtop/mirna/realign.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna
+copying mirtop/mirna/mintplates.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna
+copying mirtop/mirna/snps.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna
+copying mirtop/mirna/annotate.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna
+copying mirtop/mirna/__init__.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna
+creating /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/sql
+copying mirtop/sql/sql.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/sql
+copying mirtop/sql/__init__.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/sql
creating /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff
-copying mirtop/gff/classgff.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff
-copying mirtop/gff/update.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff
-copying mirtop/gff/stats.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff
+copying mirtop/gff/check.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff
+copying mirtop/gff/compare.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff
+copying mirtop/gff/read.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff
copying mirtop/gff/gff_versions.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff
copying mirtop/gff/convert.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff
-copying mirtop/gff/body.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff
+copying mirtop/gff/classgff.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff
copying mirtop/gff/merge.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff
-copying mirtop/gff/check.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff
copying mirtop/gff/query.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff
-copying mirtop/gff/read.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff
-copying mirtop/gff/__init__.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff
-copying mirtop/gff/compare.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff
copying mirtop/gff/header.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff
+copying mirtop/gff/update.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff
+copying mirtop/gff/stats.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff
+copying mirtop/gff/__init__.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff
+copying mirtop/gff/body.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff
copying mirtop/gff/validator.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff
+creating /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/bam
+copying mirtop/bam/bam.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/bam
+copying mirtop/bam/__init__.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/bam
+copying mirtop/bam/filter.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/bam
creating /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/importer
+copying mirtop/importer/manatee.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/importer
copying mirtop/importer/isomirsea.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/importer
-copying mirtop/importer/optimir.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/importer
-copying mirtop/importer/seqbuster.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/importer
-copying mirtop/importer/prost.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/importer
copying mirtop/importer/srnabench.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/importer
+copying mirtop/importer/prost.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/importer
+copying mirtop/importer/seqbuster.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/importer
copying mirtop/importer/__init__.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/importer
-copying mirtop/importer/manatee.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/importer
+copying mirtop/importer/optimir.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/importer
creating /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs
-copying mirtop/libs/parse.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs
-copying mirtop/libs/do.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs
-copying mirtop/libs/spikeins.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs
-copying mirtop/libs/sql.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs
+copying mirtop/libs/read.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs
copying mirtop/libs/simulator.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs
-copying mirtop/libs/config.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs
+copying mirtop/libs/utils.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs
+copying mirtop/libs/sql.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs
+copying mirtop/libs/parse.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs
copying mirtop/libs/logger.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs
+copying mirtop/libs/spikeins.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs
copying mirtop/libs/fastq.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs
-copying mirtop/libs/read.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs
+copying mirtop/libs/config.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs
copying mirtop/libs/__init__.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs
-copying mirtop/libs/utils.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs
+copying mirtop/libs/do.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs
creating /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/exporter
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copying mirtop/exporter/fasta.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/exporter
-copying mirtop/exporter/seqbuster.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/exporter
copying mirtop/exporter/vcf.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/exporter
+copying mirtop/exporter/isomirs.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/exporter
+copying mirtop/exporter/seqbuster.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/exporter
copying mirtop/exporter/__init__.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/exporter
-creating /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/sql
-copying mirtop/sql/sql.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/sql
-copying mirtop/sql/__init__.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/sql
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-copying mirtop/bam/bam.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/bam
-copying mirtop/bam/__init__.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/bam
-copying mirtop/bam/filter.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/bam
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-copying mirtop/mirna/mintplates.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna
-copying mirtop/mirna/annotate.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna
-copying mirtop/mirna/fasta.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna
-copying mirtop/mirna/keys.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna
-copying mirtop/mirna/mapper.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna
-copying mirtop/mirna/__init__.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna
-copying mirtop/mirna/realign.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna
-copying mirtop/mirna/snps.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna
running egg_info
creating mirtop.egg-info
writing mirtop.egg-info/PKG-INFO
@@ -1202,67 +1238,67 @@
running build
running build_py
creating /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop
-copying mirtop/version.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop
-copying mirtop/install.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop
copying mirtop/command_line.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop
+copying mirtop/version.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop
copying mirtop/__init__.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop
+copying mirtop/install.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop
+creating /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna
+copying mirtop/mirna/fasta.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna
+copying mirtop/mirna/mapper.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna
+copying mirtop/mirna/keys.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna
+copying mirtop/mirna/realign.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna
+copying mirtop/mirna/mintplates.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna
+copying mirtop/mirna/snps.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna
+copying mirtop/mirna/annotate.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna
+copying mirtop/mirna/__init__.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna
+creating /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/sql
+copying mirtop/sql/sql.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/sql
+copying mirtop/sql/__init__.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/sql
creating /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff
-copying mirtop/gff/classgff.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff
-copying mirtop/gff/update.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff
-copying mirtop/gff/stats.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff
+copying mirtop/gff/check.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff
+copying mirtop/gff/compare.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff
+copying mirtop/gff/read.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff
copying mirtop/gff/gff_versions.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff
copying mirtop/gff/convert.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff
-copying mirtop/gff/body.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff
+copying mirtop/gff/classgff.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff
copying mirtop/gff/merge.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff
-copying mirtop/gff/check.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff
copying mirtop/gff/query.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff
-copying mirtop/gff/read.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff
-copying mirtop/gff/__init__.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff
-copying mirtop/gff/compare.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff
copying mirtop/gff/header.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff
+copying mirtop/gff/update.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff
+copying mirtop/gff/stats.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff
+copying mirtop/gff/__init__.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff
+copying mirtop/gff/body.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff
copying mirtop/gff/validator.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff
+creating /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/bam
+copying mirtop/bam/bam.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/bam
+copying mirtop/bam/__init__.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/bam
+copying mirtop/bam/filter.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/bam
creating /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/importer
+copying mirtop/importer/manatee.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/importer
copying mirtop/importer/isomirsea.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/importer
-copying mirtop/importer/optimir.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/importer
-copying mirtop/importer/seqbuster.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/importer
-copying mirtop/importer/prost.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/importer
copying mirtop/importer/srnabench.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/importer
+copying mirtop/importer/prost.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/importer
+copying mirtop/importer/seqbuster.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/importer
copying mirtop/importer/__init__.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/importer
-copying mirtop/importer/manatee.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/importer
+copying mirtop/importer/optimir.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/importer
creating /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs
-copying mirtop/libs/parse.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs
-copying mirtop/libs/do.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs
-copying mirtop/libs/spikeins.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs
-copying mirtop/libs/sql.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs
+copying mirtop/libs/read.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs
copying mirtop/libs/simulator.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs
-copying mirtop/libs/config.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs
+copying mirtop/libs/utils.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs
+copying mirtop/libs/sql.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs
+copying mirtop/libs/parse.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs
copying mirtop/libs/logger.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs
+copying mirtop/libs/spikeins.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs
copying mirtop/libs/fastq.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs
-copying mirtop/libs/read.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs
+copying mirtop/libs/config.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs
copying mirtop/libs/__init__.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs
-copying mirtop/libs/utils.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs
+copying mirtop/libs/do.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs
creating /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/exporter
-copying mirtop/exporter/isomirs.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/exporter
copying mirtop/exporter/fasta.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/exporter
-copying mirtop/exporter/seqbuster.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/exporter
copying mirtop/exporter/vcf.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/exporter
+copying mirtop/exporter/isomirs.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/exporter
+copying mirtop/exporter/seqbuster.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/exporter
copying mirtop/exporter/__init__.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/exporter
-creating /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/sql
-copying mirtop/sql/sql.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/sql
-copying mirtop/sql/__init__.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/sql
-creating /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/bam
-copying mirtop/bam/bam.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/bam
-copying mirtop/bam/__init__.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/bam
-copying mirtop/bam/filter.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/bam
-creating /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna
-copying mirtop/mirna/mintplates.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna
-copying mirtop/mirna/annotate.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna
-copying mirtop/mirna/fasta.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna
-copying mirtop/mirna/keys.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna
-copying mirtop/mirna/mapper.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna
-copying mirtop/mirna/__init__.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna
-copying mirtop/mirna/realign.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna
-copying mirtop/mirna/snps.py -> /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna
running egg_info
writing mirtop.egg-info/PKG-INFO
writing dependency_links to mirtop.egg-info/dependency_links.txt
@@ -1456,121 +1492,121 @@
running install_lib
creating /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages
creating /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/command_line.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop
+creating /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna/fasta.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna/mapper.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna/keys.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna/realign.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna/mintplates.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna/snps.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna/annotate.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna/__init__.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna
+creating /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/sql
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/sql/sql.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/sql
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/sql/__init__.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/sql
creating /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff/classgff.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff/update.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff/stats.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff/check.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff/compare.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff/read.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff
copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff/gff_versions.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff
copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff/convert.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff/body.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff/classgff.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff
copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff/merge.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff/check.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff
copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff/query.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff/read.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff/__init__.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff/compare.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff
copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff/header.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff/update.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff/stats.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff/__init__.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff/body.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff
copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/gff/validator.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/version.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop
+creating /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/bam
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/bam/bam.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/bam
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/bam/__init__.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/bam
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/bam/filter.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/bam
creating /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/importer
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/importer/manatee.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/importer
copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/importer/isomirsea.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/importer
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/importer/optimir.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/importer
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/importer/seqbuster.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/importer
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/importer/prost.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/importer
copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/importer/srnabench.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/importer
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/importer/prost.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/importer
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/importer/seqbuster.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/importer
copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/importer/__init__.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/importer
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/importer/manatee.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/importer
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/importer/optimir.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/importer
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/__init__.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/install.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop
creating /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs/parse.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs/do.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs/spikeins.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs/sql.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs/read.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs
copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs/simulator.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs/config.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs/utils.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs/sql.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs/parse.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs
copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs/logger.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs/spikeins.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs
copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs/fastq.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs/read.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs/config.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs
copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs/__init__.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs/utils.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/libs/do.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs
creating /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/exporter
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/exporter/isomirs.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/exporter
copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/exporter/fasta.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/exporter
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/exporter/seqbuster.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/exporter
copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/exporter/vcf.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/exporter
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/exporter/isomirs.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/exporter
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/exporter/seqbuster.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/exporter
copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/exporter/__init__.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/exporter
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/version.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop
-creating /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/sql
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/sql/sql.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/sql
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/sql/__init__.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/sql
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/install.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/command_line.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/__init__.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop
-creating /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/bam
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/bam/bam.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/bam
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/bam/__init__.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/bam
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/bam/filter.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/bam
-creating /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna/mintplates.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna/annotate.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna/fasta.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna/keys.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna/mapper.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna/__init__.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna/realign.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.12_mirtop/build/mirtop/mirna/snps.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff/classgff.py to classgff.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff/update.py to update.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff/stats.py to stats.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/command_line.py to command_line.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna/fasta.py to fasta.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna/mapper.py to mapper.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna/keys.py to keys.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna/realign.py to realign.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna/mintplates.py to mintplates.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna/snps.py to snps.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna/annotate.py to annotate.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna/__init__.py to __init__.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/sql/sql.py to sql.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/sql/__init__.py to __init__.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff/check.py to check.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff/compare.py to compare.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff/read.py to read.cpython-312.pyc
byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff/gff_versions.py to gff_versions.cpython-312.pyc
byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff/convert.py to convert.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff/body.py to body.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff/classgff.py to classgff.cpython-312.pyc
byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff/merge.py to merge.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff/check.py to check.cpython-312.pyc
byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff/query.py to query.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff/read.py to read.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff/__init__.py to __init__.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff/compare.py to compare.cpython-312.pyc
byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff/header.py to header.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff/update.py to update.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff/stats.py to stats.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff/__init__.py to __init__.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff/body.py to body.cpython-312.pyc
byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/gff/validator.py to validator.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/version.py to version.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/bam/bam.py to bam.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/bam/__init__.py to __init__.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/bam/filter.py to filter.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/importer/manatee.py to manatee.cpython-312.pyc
byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/importer/isomirsea.py to isomirsea.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/importer/optimir.py to optimir.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/importer/seqbuster.py to seqbuster.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/importer/prost.py to prost.cpython-312.pyc
byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/importer/srnabench.py to srnabench.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/importer/prost.py to prost.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/importer/seqbuster.py to seqbuster.cpython-312.pyc
byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/importer/__init__.py to __init__.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/importer/manatee.py to manatee.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs/parse.py to parse.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs/do.py to do.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs/spikeins.py to spikeins.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs/sql.py to sql.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/importer/optimir.py to optimir.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/__init__.py to __init__.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/install.py to install.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs/read.py to read.cpython-312.pyc
byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs/simulator.py to simulator.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs/config.py to config.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs/utils.py to utils.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs/sql.py to sql.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs/parse.py to parse.cpython-312.pyc
byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs/logger.py to logger.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs/spikeins.py to spikeins.cpython-312.pyc
byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs/fastq.py to fastq.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs/read.py to read.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs/config.py to config.cpython-312.pyc
byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs/__init__.py to __init__.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs/utils.py to utils.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/exporter/isomirs.py to isomirs.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/libs/do.py to do.cpython-312.pyc
byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/exporter/fasta.py to fasta.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/exporter/seqbuster.py to seqbuster.cpython-312.pyc
byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/exporter/vcf.py to vcf.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/exporter/isomirs.py to isomirs.cpython-312.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/exporter/seqbuster.py to seqbuster.cpython-312.pyc
byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/exporter/__init__.py to __init__.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/version.py to version.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/sql/sql.py to sql.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/sql/__init__.py to __init__.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/install.py to install.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/command_line.py to command_line.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/__init__.py to __init__.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/bam/bam.py to bam.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/bam/__init__.py to __init__.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/bam/filter.py to filter.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna/mintplates.py to mintplates.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna/annotate.py to annotate.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna/fasta.py to fasta.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna/keys.py to keys.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna/mapper.py to mapper.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna/__init__.py to __init__.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna/realign.py to realign.cpython-312.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop/mirna/snps.py to snps.cpython-312.pyc
running install_egg_info
Copying mirtop.egg-info to /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.12/dist-packages/mirtop-0.4.28.egg-info
Skipping SOURCES.txt
@@ -1608,121 +1644,121 @@
running install_lib
creating /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages
creating /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/command_line.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop
+creating /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna/fasta.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna/mapper.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna/keys.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna/realign.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna/mintplates.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna/snps.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna/annotate.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna/__init__.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna
+creating /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/sql
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/sql/sql.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/sql
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/sql/__init__.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/sql
creating /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff/classgff.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff/update.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff/stats.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff/check.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff/compare.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff/read.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff
copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff/gff_versions.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff
copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff/convert.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff/body.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff/classgff.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff
copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff/merge.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff/check.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff
copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff/query.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff/read.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff/__init__.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff/compare.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff
copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff/header.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff/update.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff/stats.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff/__init__.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff/body.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff
copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/gff/validator.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/version.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop
+creating /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/bam
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/bam/bam.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/bam
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/bam/__init__.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/bam
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/bam/filter.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/bam
creating /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/importer
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/importer/manatee.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/importer
copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/importer/isomirsea.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/importer
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/importer/optimir.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/importer
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/importer/seqbuster.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/importer
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/importer/prost.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/importer
copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/importer/srnabench.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/importer
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/importer/prost.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/importer
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/importer/seqbuster.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/importer
copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/importer/__init__.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/importer
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/importer/manatee.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/importer
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/importer/optimir.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/importer
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/__init__.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/install.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop
creating /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs/parse.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs/do.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs/spikeins.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs/sql.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs/read.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs
copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs/simulator.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs/config.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs/utils.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs/sql.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs/parse.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs
copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs/logger.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs/spikeins.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs
copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs/fastq.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs/read.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs/config.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs
copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs/__init__.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs/utils.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/libs/do.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs
creating /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/exporter
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/exporter/isomirs.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/exporter
copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/exporter/fasta.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/exporter
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/exporter/seqbuster.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/exporter
copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/exporter/vcf.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/exporter
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/exporter/isomirs.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/exporter
+copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/exporter/seqbuster.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/exporter
copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/exporter/__init__.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/exporter
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/version.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop
-creating /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/sql
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/sql/sql.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/sql
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/sql/__init__.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/sql
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/install.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/command_line.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/__init__.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop
-creating /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/bam
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/bam/bam.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/bam
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/bam/__init__.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/bam
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/bam/filter.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/bam
-creating /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna/mintplates.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna/annotate.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna/fasta.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna/keys.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna/mapper.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna/__init__.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna/realign.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna
-copying /build/reproducible-path/mirtop-0.4.28/.pybuild/cpython3_3.13_mirtop/build/mirtop/mirna/snps.py -> /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff/classgff.py to classgff.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff/update.py to update.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff/stats.py to stats.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/command_line.py to command_line.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna/fasta.py to fasta.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna/mapper.py to mapper.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna/keys.py to keys.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna/realign.py to realign.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna/mintplates.py to mintplates.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna/snps.py to snps.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna/annotate.py to annotate.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna/__init__.py to __init__.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/sql/sql.py to sql.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/sql/__init__.py to __init__.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff/check.py to check.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff/compare.py to compare.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff/read.py to read.cpython-313.pyc
byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff/gff_versions.py to gff_versions.cpython-313.pyc
byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff/convert.py to convert.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff/body.py to body.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff/classgff.py to classgff.cpython-313.pyc
byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff/merge.py to merge.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff/check.py to check.cpython-313.pyc
byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff/query.py to query.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff/read.py to read.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff/__init__.py to __init__.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff/compare.py to compare.cpython-313.pyc
byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff/header.py to header.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff/update.py to update.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff/stats.py to stats.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff/__init__.py to __init__.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff/body.py to body.cpython-313.pyc
byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/gff/validator.py to validator.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/version.py to version.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/bam/bam.py to bam.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/bam/__init__.py to __init__.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/bam/filter.py to filter.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/importer/manatee.py to manatee.cpython-313.pyc
byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/importer/isomirsea.py to isomirsea.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/importer/optimir.py to optimir.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/importer/seqbuster.py to seqbuster.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/importer/prost.py to prost.cpython-313.pyc
byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/importer/srnabench.py to srnabench.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/importer/prost.py to prost.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/importer/seqbuster.py to seqbuster.cpython-313.pyc
byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/importer/__init__.py to __init__.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/importer/manatee.py to manatee.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs/parse.py to parse.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs/do.py to do.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs/spikeins.py to spikeins.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs/sql.py to sql.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/importer/optimir.py to optimir.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/__init__.py to __init__.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/install.py to install.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs/read.py to read.cpython-313.pyc
byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs/simulator.py to simulator.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs/config.py to config.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs/utils.py to utils.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs/sql.py to sql.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs/parse.py to parse.cpython-313.pyc
byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs/logger.py to logger.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs/spikeins.py to spikeins.cpython-313.pyc
byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs/fastq.py to fastq.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs/read.py to read.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs/config.py to config.cpython-313.pyc
byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs/__init__.py to __init__.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs/utils.py to utils.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/exporter/isomirs.py to isomirs.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/libs/do.py to do.cpython-313.pyc
byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/exporter/fasta.py to fasta.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/exporter/seqbuster.py to seqbuster.cpython-313.pyc
byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/exporter/vcf.py to vcf.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/exporter/isomirs.py to isomirs.cpython-313.pyc
+byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/exporter/seqbuster.py to seqbuster.cpython-313.pyc
byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/exporter/__init__.py to __init__.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/version.py to version.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/sql/sql.py to sql.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/sql/__init__.py to __init__.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/install.py to install.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/command_line.py to command_line.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/__init__.py to __init__.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/bam/bam.py to bam.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/bam/__init__.py to __init__.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/bam/filter.py to filter.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna/mintplates.py to mintplates.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna/annotate.py to annotate.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna/fasta.py to fasta.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna/keys.py to keys.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna/mapper.py to mapper.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna/__init__.py to __init__.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna/realign.py to realign.cpython-313.pyc
-byte-compiling /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop/mirna/snps.py to snps.cpython-313.pyc
running install_egg_info
Copying mirtop.egg-info to /build/reproducible-path/mirtop-0.4.28/debian/python3-mirtop/usr/lib/python3.13/dist-packages/mirtop-0.4.28.egg-info
Skipping SOURCES.txt
@@ -1783,23 +1819,23 @@
dh_compress -O--buildsystem=pybuild
cd debian/python3-mirtop
cd debian/mirtop
- chmod a-x usr/share/doc/mirtop/changelog usr/share/doc/mirtop/changelog.Debian usr/share/man/man1/mirtop.1
chmod a-x usr/share/doc/python3-mirtop/changelog usr/share/doc/python3-mirtop/changelog.Debian
- gzip -9nf usr/share/doc/mirtop/changelog usr/share/doc/mirtop/changelog.Debian usr/share/man/man1/mirtop.1
+ chmod a-x usr/share/doc/mirtop/changelog usr/share/doc/mirtop/changelog.Debian usr/share/man/man1/mirtop.1
gzip -9nf usr/share/doc/python3-mirtop/changelog usr/share/doc/python3-mirtop/changelog.Debian
+ gzip -9nf usr/share/doc/mirtop/changelog usr/share/doc/mirtop/changelog.Debian usr/share/man/man1/mirtop.1
cd '/build/reproducible-path/mirtop-0.4.28'
cd '/build/reproducible-path/mirtop-0.4.28'
dh_fixperms -O--buildsystem=pybuild
find debian/python3-mirtop ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
find debian/mirtop ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
- find debian/python3-mirtop/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-mirtop/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
find debian/mirtop/usr/share/doc -type f -a -true -a ! -regex 'debian/mirtop/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
- find debian/python3-mirtop/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
+ find debian/python3-mirtop/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-mirtop/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
find debian/mirtop/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
- find debian/python3-mirtop -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
+ find debian/python3-mirtop/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
find debian/mirtop/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
- find debian/python3-mirtop/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w
+ find debian/python3-mirtop -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/mirtop -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
+ find debian/python3-mirtop/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w
find debian/mirtop/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x
dh_missing -O--buildsystem=pybuild
dh_installdeb -O--buildsystem=pybuild
@@ -1826,8 +1862,8 @@
dh_md5sums -O--buildsystem=pybuild
install -m0755 -d debian/python3-mirtop/DEBIAN
install -m0755 -d debian/mirtop/DEBIAN
- cd debian/python3-mirtop >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
cd debian/mirtop >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
+ cd debian/python3-mirtop >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/mirtop/DEBIAN/md5sums
chmod 0644 -- debian/python3-mirtop/DEBIAN/md5sums
dh_builddeb -O--buildsystem=pybuild
@@ -1843,12 +1879,14 @@
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
+I: user script /srv/workspace/pbuilder/87819/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/87819/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
-I: removing directory /srv/workspace/pbuilder/60061 and its subdirectories
-I: Current time: Sat Feb 22 09:32:07 -12 2025
-I: pbuilder-time-stamp: 1740259927
+I: removing directory /srv/workspace/pbuilder/87819 and its subdirectories
+I: Current time: Sat Mar 28 17:57:01 +14 2026
+I: pbuilder-time-stamp: 1774670221