Diff of the two buildlogs: -- --- b1/build.log 2024-11-29 16:41:34.880422057 +0000 +++ b2/build.log 2024-11-29 16:54:49.360615912 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Nov 29 04:22:09 -12 2024 -I: pbuilder-time-stamp: 1732897329 +I: Current time: Fri Jan 2 13:04:41 +14 2026 +I: pbuilder-time-stamp: 1767308681 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -29,53 +29,85 @@ dpkg-source: info: applying simde.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3641/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/31369/tmp/hooks/D01_modify_environment starting +debug: Running on infom08-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jan 1 23:04 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/31369/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/31369/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=6 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=5 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='892345bb5596452394ad1137a3fbc543' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3641' - PS1='# ' - PS2='> ' + INVOCATION_ID=a22e6ea5fc4a4fc894f87c558c9096d0 + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=31369 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.duqaFrQO/pbuilderrc_sM3B --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.duqaFrQO/b1 --logfile b1/build.log macs_3.0.2-1.dsc' - SUDO_GID='111' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.duqaFrQO/pbuilderrc_sfa7 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.duqaFrQO/b2 --logfile b2/build.log macs_3.0.2-1.dsc' + SUDO_GID=111 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' I: uname -a - Linux infom07-i386 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3641/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/31369/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -247,7 +279,7 @@ Get: 106 http://deb.debian.org/debian trixie/main i386 python3-pip all 24.3.1+dfsg-1 [1441 kB] Get: 107 http://deb.debian.org/debian trixie/main i386 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 108 http://deb.debian.org/debian trixie/main i386 python3-pytest all 8.3.3-1 [249 kB] -Fetched 83.0 MB in 1s (58.1 MB/s) +Fetched 83.0 MB in 3s (31.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19952 files and directories currently installed.) @@ -606,8 +638,8 @@ Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' -Local time is now: Fri Nov 29 16:22:39 UTC 2024. -Universal Time is now: Fri Nov 29 16:22:39 UTC 2024. +Local time is now: Thu Jan 1 23:05:07 UTC 2026. +Universal Time is now: Thu Jan 1 23:05:07 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... @@ -717,7 +749,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/macs-3.0.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../macs_3.0.2-1_source.changes +I: user script /srv/workspace/pbuilder/31369/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/31369/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/macs-3.0.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../macs_3.0.2-1_source.changes dpkg-buildpackage: info: source package macs dpkg-buildpackage: info: source version 3.0.2-1 dpkg-buildpackage: info: source distribution unstable @@ -810,27 +846,27 @@ creating build/lib.linux-i686-cpython-312/MACS3/Signal copying MACS3/Signal/__init__.py -> build/lib.linux-i686-cpython-312/MACS3/Signal creating build/lib.linux-i686-cpython-312/MACS3/Commands -copying MACS3/Commands/bdgbroadcall_cmd.py -> build/lib.linux-i686-cpython-312/MACS3/Commands -copying MACS3/Commands/bdgopt_cmd.py -> build/lib.linux-i686-cpython-312/MACS3/Commands +copying MACS3/Commands/refinepeak_cmd.py -> build/lib.linux-i686-cpython-312/MACS3/Commands +copying MACS3/Commands/predictd_cmd.py -> build/lib.linux-i686-cpython-312/MACS3/Commands copying MACS3/Commands/diffpeak_cmd.py -> build/lib.linux-i686-cpython-312/MACS3/Commands -copying MACS3/Commands/bdgpeakcall_cmd.py -> build/lib.linux-i686-cpython-312/MACS3/Commands +copying MACS3/Commands/filterdup_cmd.py -> build/lib.linux-i686-cpython-312/MACS3/Commands copying MACS3/Commands/callpeak_cmd.py -> build/lib.linux-i686-cpython-312/MACS3/Commands -copying MACS3/Commands/randsample_cmd.py -> build/lib.linux-i686-cpython-312/MACS3/Commands -copying MACS3/Commands/refinepeak_cmd.py -> build/lib.linux-i686-cpython-312/MACS3/Commands -copying MACS3/Commands/cmbreps_cmd.py -> build/lib.linux-i686-cpython-312/MACS3/Commands -copying MACS3/Commands/bdgcmp_cmd.py -> build/lib.linux-i686-cpython-312/MACS3/Commands +copying MACS3/Commands/bdgpeakcall_cmd.py -> build/lib.linux-i686-cpython-312/MACS3/Commands copying MACS3/Commands/pileup_cmd.py -> build/lib.linux-i686-cpython-312/MACS3/Commands -copying MACS3/Commands/hmmratac_cmd.py -> build/lib.linux-i686-cpython-312/MACS3/Commands -copying MACS3/Commands/filterdup_cmd.py -> build/lib.linux-i686-cpython-312/MACS3/Commands -copying MACS3/Commands/__init__.py -> build/lib.linux-i686-cpython-312/MACS3/Commands -copying MACS3/Commands/predictd_cmd.py -> build/lib.linux-i686-cpython-312/MACS3/Commands -copying MACS3/Commands/callvar_cmd.py -> build/lib.linux-i686-cpython-312/MACS3/Commands +copying MACS3/Commands/bdgcmp_cmd.py -> build/lib.linux-i686-cpython-312/MACS3/Commands +copying MACS3/Commands/cmbreps_cmd.py -> build/lib.linux-i686-cpython-312/MACS3/Commands copying MACS3/Commands/bdgdiff_cmd.py -> build/lib.linux-i686-cpython-312/MACS3/Commands +copying MACS3/Commands/callvar_cmd.py -> build/lib.linux-i686-cpython-312/MACS3/Commands +copying MACS3/Commands/__init__.py -> build/lib.linux-i686-cpython-312/MACS3/Commands +copying MACS3/Commands/bdgbroadcall_cmd.py -> build/lib.linux-i686-cpython-312/MACS3/Commands +copying MACS3/Commands/randsample_cmd.py -> build/lib.linux-i686-cpython-312/MACS3/Commands +copying MACS3/Commands/bdgopt_cmd.py -> build/lib.linux-i686-cpython-312/MACS3/Commands +copying MACS3/Commands/hmmratac_cmd.py -> build/lib.linux-i686-cpython-312/MACS3/Commands creating build/lib.linux-i686-cpython-312/MACS3/Utilities -copying MACS3/Utilities/Constants.py -> build/lib.linux-i686-cpython-312/MACS3/Utilities +copying MACS3/Utilities/Logger.py -> build/lib.linux-i686-cpython-312/MACS3/Utilities copying MACS3/Utilities/OptValidator.py -> build/lib.linux-i686-cpython-312/MACS3/Utilities +copying MACS3/Utilities/Constants.py -> build/lib.linux-i686-cpython-312/MACS3/Utilities copying MACS3/Utilities/__init__.py -> build/lib.linux-i686-cpython-312/MACS3/Utilities -copying MACS3/Utilities/Logger.py -> build/lib.linux-i686-cpython-312/MACS3/Utilities running build_ext building 'MACS3.Signal.HMMR_EM' extension creating build/temp.linux-i686-cpython-312 @@ -939,57 +975,57 @@ creating build/bdist.linux-i686/wheel/MACS3 creating build/bdist.linux-i686/wheel/MACS3/IO copying build/lib.linux-i686-cpython-312/MACS3/IO/OutputWriter.py -> build/bdist.linux-i686/wheel/./MACS3/IO -copying build/lib.linux-i686-cpython-312/MACS3/IO/Parser.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./MACS3/IO copying build/lib.linux-i686-cpython-312/MACS3/IO/BedGraphIO.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./MACS3/IO -copying build/lib.linux-i686-cpython-312/MACS3/IO/__init__.py -> build/bdist.linux-i686/wheel/./MACS3/IO +copying build/lib.linux-i686-cpython-312/MACS3/IO/Parser.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./MACS3/IO copying build/lib.linux-i686-cpython-312/MACS3/IO/PeakIO.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./MACS3/IO +copying build/lib.linux-i686-cpython-312/MACS3/IO/__init__.py -> build/bdist.linux-i686/wheel/./MACS3/IO copying build/lib.linux-i686-cpython-312/MACS3/IO/BAM.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./MACS3/IO -creating build/bdist.linux-i686/wheel/MACS3/Utilities -copying build/lib.linux-i686-cpython-312/MACS3/Utilities/Constants.py -> build/bdist.linux-i686/wheel/./MACS3/Utilities -copying build/lib.linux-i686-cpython-312/MACS3/Utilities/OptValidator.py -> build/bdist.linux-i686/wheel/./MACS3/Utilities -copying build/lib.linux-i686-cpython-312/MACS3/Utilities/__init__.py -> build/bdist.linux-i686/wheel/./MACS3/Utilities -copying build/lib.linux-i686-cpython-312/MACS3/Utilities/Logger.py -> build/bdist.linux-i686/wheel/./MACS3/Utilities -copying build/lib.linux-i686-cpython-312/MACS3/__init__.py -> build/bdist.linux-i686/wheel/./MACS3 creating build/bdist.linux-i686/wheel/MACS3/Signal +copying build/lib.linux-i686-cpython-312/MACS3/Signal/HMMR_Signal_Processing.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./MACS3/Signal +copying build/lib.linux-i686-cpython-312/MACS3/Signal/HMMR_HMM.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./MACS3/Signal +copying build/lib.linux-i686-cpython-312/MACS3/Signal/RACollection.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./MACS3/Signal +copying build/lib.linux-i686-cpython-312/MACS3/Signal/PeakVariants.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./MACS3/Signal +copying build/lib.linux-i686-cpython-312/MACS3/Signal/CallPeakUnit.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./MACS3/Signal copying build/lib.linux-i686-cpython-312/MACS3/Signal/Region.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./MACS3/Signal -copying build/lib.linux-i686-cpython-312/MACS3/Signal/Pileup.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./MACS3/Signal copying build/lib.linux-i686-cpython-312/MACS3/Signal/VariantStat.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./MACS3/Signal -copying build/lib.linux-i686-cpython-312/MACS3/Signal/ScoreTrack.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./MACS3/Signal -copying build/lib.linux-i686-cpython-312/MACS3/Signal/HMMR_HMM.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./MACS3/Signal +copying build/lib.linux-i686-cpython-312/MACS3/Signal/FixWidthTrack.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./MACS3/Signal +copying build/lib.linux-i686-cpython-312/MACS3/Signal/PairedEndTrack.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./MACS3/Signal +copying build/lib.linux-i686-cpython-312/MACS3/Signal/PosReadsInfo.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./MACS3/Signal +copying build/lib.linux-i686-cpython-312/MACS3/Signal/HMMR_EM.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./MACS3/Signal copying build/lib.linux-i686-cpython-312/MACS3/Signal/SignalProcessing.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./MACS3/Signal -copying build/lib.linux-i686-cpython-312/MACS3/Signal/UnitigRACollection.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./MACS3/Signal -copying build/lib.linux-i686-cpython-312/MACS3/Signal/PeakVariants.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./MACS3/Signal copying build/lib.linux-i686-cpython-312/MACS3/Signal/PeakDetect.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./MACS3/Signal +copying build/lib.linux-i686-cpython-312/MACS3/Signal/ScoreTrack.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./MACS3/Signal +copying build/lib.linux-i686-cpython-312/MACS3/Signal/PileupV2.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./MACS3/Signal +copying build/lib.linux-i686-cpython-312/MACS3/Signal/UnitigRACollection.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./MACS3/Signal copying build/lib.linux-i686-cpython-312/MACS3/Signal/__init__.py -> build/bdist.linux-i686/wheel/./MACS3/Signal -copying build/lib.linux-i686-cpython-312/MACS3/Signal/CallPeakUnit.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./MACS3/Signal -copying build/lib.linux-i686-cpython-312/MACS3/Signal/RACollection.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./MACS3/Signal -copying build/lib.linux-i686-cpython-312/MACS3/Signal/HMMR_EM.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./MACS3/Signal -copying build/lib.linux-i686-cpython-312/MACS3/Signal/PosReadsInfo.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./MACS3/Signal +copying build/lib.linux-i686-cpython-312/MACS3/Signal/Pileup.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./MACS3/Signal +copying build/lib.linux-i686-cpython-312/MACS3/Signal/PeakModel.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./MACS3/Signal copying build/lib.linux-i686-cpython-312/MACS3/Signal/ReadAlignment.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./MACS3/Signal -copying build/lib.linux-i686-cpython-312/MACS3/Signal/HMMR_Signal_Processing.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./MACS3/Signal copying build/lib.linux-i686-cpython-312/MACS3/Signal/BedGraph.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./MACS3/Signal -copying build/lib.linux-i686-cpython-312/MACS3/Signal/PileupV2.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./MACS3/Signal -copying build/lib.linux-i686-cpython-312/MACS3/Signal/PairedEndTrack.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./MACS3/Signal -copying build/lib.linux-i686-cpython-312/MACS3/Signal/PeakModel.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./MACS3/Signal copying build/lib.linux-i686-cpython-312/MACS3/Signal/Prob.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./MACS3/Signal -copying build/lib.linux-i686-cpython-312/MACS3/Signal/FixWidthTrack.cpython-312-i386-linux-gnu.so -> build/bdist.linux-i686/wheel/./MACS3/Signal +copying build/lib.linux-i686-cpython-312/MACS3/__init__.py -> build/bdist.linux-i686/wheel/./MACS3 creating build/bdist.linux-i686/wheel/MACS3/Commands -copying build/lib.linux-i686-cpython-312/MACS3/Commands/bdgbroadcall_cmd.py -> build/bdist.linux-i686/wheel/./MACS3/Commands -copying build/lib.linux-i686-cpython-312/MACS3/Commands/bdgopt_cmd.py -> build/bdist.linux-i686/wheel/./MACS3/Commands +copying build/lib.linux-i686-cpython-312/MACS3/Commands/refinepeak_cmd.py -> build/bdist.linux-i686/wheel/./MACS3/Commands +copying build/lib.linux-i686-cpython-312/MACS3/Commands/predictd_cmd.py -> build/bdist.linux-i686/wheel/./MACS3/Commands copying build/lib.linux-i686-cpython-312/MACS3/Commands/diffpeak_cmd.py -> build/bdist.linux-i686/wheel/./MACS3/Commands -copying build/lib.linux-i686-cpython-312/MACS3/Commands/bdgpeakcall_cmd.py -> build/bdist.linux-i686/wheel/./MACS3/Commands +copying build/lib.linux-i686-cpython-312/MACS3/Commands/filterdup_cmd.py -> build/bdist.linux-i686/wheel/./MACS3/Commands copying build/lib.linux-i686-cpython-312/MACS3/Commands/callpeak_cmd.py -> build/bdist.linux-i686/wheel/./MACS3/Commands -copying build/lib.linux-i686-cpython-312/MACS3/Commands/randsample_cmd.py -> build/bdist.linux-i686/wheel/./MACS3/Commands -copying build/lib.linux-i686-cpython-312/MACS3/Commands/refinepeak_cmd.py -> build/bdist.linux-i686/wheel/./MACS3/Commands -copying build/lib.linux-i686-cpython-312/MACS3/Commands/cmbreps_cmd.py -> build/bdist.linux-i686/wheel/./MACS3/Commands -copying build/lib.linux-i686-cpython-312/MACS3/Commands/bdgcmp_cmd.py -> build/bdist.linux-i686/wheel/./MACS3/Commands +copying build/lib.linux-i686-cpython-312/MACS3/Commands/bdgpeakcall_cmd.py -> build/bdist.linux-i686/wheel/./MACS3/Commands copying build/lib.linux-i686-cpython-312/MACS3/Commands/pileup_cmd.py -> build/bdist.linux-i686/wheel/./MACS3/Commands -copying build/lib.linux-i686-cpython-312/MACS3/Commands/hmmratac_cmd.py -> build/bdist.linux-i686/wheel/./MACS3/Commands -copying build/lib.linux-i686-cpython-312/MACS3/Commands/filterdup_cmd.py -> build/bdist.linux-i686/wheel/./MACS3/Commands -copying build/lib.linux-i686-cpython-312/MACS3/Commands/__init__.py -> build/bdist.linux-i686/wheel/./MACS3/Commands -copying build/lib.linux-i686-cpython-312/MACS3/Commands/predictd_cmd.py -> build/bdist.linux-i686/wheel/./MACS3/Commands -copying build/lib.linux-i686-cpython-312/MACS3/Commands/callvar_cmd.py -> build/bdist.linux-i686/wheel/./MACS3/Commands +copying build/lib.linux-i686-cpython-312/MACS3/Commands/bdgcmp_cmd.py -> build/bdist.linux-i686/wheel/./MACS3/Commands +copying build/lib.linux-i686-cpython-312/MACS3/Commands/cmbreps_cmd.py -> build/bdist.linux-i686/wheel/./MACS3/Commands copying build/lib.linux-i686-cpython-312/MACS3/Commands/bdgdiff_cmd.py -> build/bdist.linux-i686/wheel/./MACS3/Commands +copying build/lib.linux-i686-cpython-312/MACS3/Commands/callvar_cmd.py -> build/bdist.linux-i686/wheel/./MACS3/Commands +copying build/lib.linux-i686-cpython-312/MACS3/Commands/__init__.py -> build/bdist.linux-i686/wheel/./MACS3/Commands +copying build/lib.linux-i686-cpython-312/MACS3/Commands/bdgbroadcall_cmd.py -> build/bdist.linux-i686/wheel/./MACS3/Commands +copying build/lib.linux-i686-cpython-312/MACS3/Commands/randsample_cmd.py -> build/bdist.linux-i686/wheel/./MACS3/Commands +copying build/lib.linux-i686-cpython-312/MACS3/Commands/bdgopt_cmd.py -> build/bdist.linux-i686/wheel/./MACS3/Commands +copying build/lib.linux-i686-cpython-312/MACS3/Commands/hmmratac_cmd.py -> build/bdist.linux-i686/wheel/./MACS3/Commands +creating build/bdist.linux-i686/wheel/MACS3/Utilities +copying build/lib.linux-i686-cpython-312/MACS3/Utilities/Logger.py -> build/bdist.linux-i686/wheel/./MACS3/Utilities +copying build/lib.linux-i686-cpython-312/MACS3/Utilities/OptValidator.py -> build/bdist.linux-i686/wheel/./MACS3/Utilities +copying build/lib.linux-i686-cpython-312/MACS3/Utilities/Constants.py -> build/bdist.linux-i686/wheel/./MACS3/Utilities +copying build/lib.linux-i686-cpython-312/MACS3/Utilities/__init__.py -> build/bdist.linux-i686/wheel/./MACS3/Utilities running install_egg_info running egg_info creating MACS3.egg-info @@ -1106,7 +1142,7 @@ copying build/scripts-3.12/macs3 -> build/bdist.linux-i686/wheel/MACS3-3.0.2.data/scripts changing mode of build/bdist.linux-i686/wheel/MACS3-3.0.2.data/scripts/macs3 to 755 creating build/bdist.linux-i686/wheel/MACS3-3.0.2.dist-info/WHEEL -creating '/build/reproducible-path/macs-3.0.2/.pybuild/cpython3_3.12_MACS3/.tmp-zo96ty_l/MACS3-3.0.2-cp312-cp312-linux_i686.whl' and adding 'build/bdist.linux-i686/wheel' to it +creating '/build/reproducible-path/macs-3.0.2/.pybuild/cpython3_3.12_MACS3/.tmp-58m95y7q/MACS3-3.0.2-cp312-cp312-linux_i686.whl' and adding 'build/bdist.linux-i686/wheel' to it adding 'MACS3/__init__.py' adding 'MACS3/Commands/__init__.py' adding 'MACS3/Commands/bdgbroadcall_cmd.py' @@ -1204,7 +1240,7 @@ test/test_SignalProcessing.py s. [ 98%] test/test_online.py . [100%] -======================== 65 passed, 3 skipped in 23.02s ======================== +======================== 65 passed, 3 skipped in 16.90s ======================== cd test && for PY3VER in 3.12; do \ export PATH=/build/reproducible-path/macs-3.0.2/.pybuild/cpython3_${PY3VER}_MACS3/scripts:$PATH \ && export PYTHONPATH=/build/reproducible-path/macs-3.0.2/.pybuild/cpython3_${PY3VER}_MACS3/build \ @@ -1624,8 +1660,8 @@ checking the files: ../temp/macs3.0.2-1-3.12_run_hmmratac/hmmratac_yeast500k_poisson_load_training_regions_accessible_regions.narrowPeak vs standard_results_hmmratac/hmmratac_yeast500k_poisson_load_training_regions_accessible_regions.narrowPeak ... success! Results are different but Jaccard Index is 0.999793559042114 (>0.99) 18. brief speed test -CPU time (mm:ss): 00:01:06 -Max mem (KB): 154440 +CPU time (mm:ss): 00:01:00 +Max mem (KB): 164336 make[1]: Leaving directory '/build/reproducible-path/macs-3.0.2' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild @@ -1668,12 +1704,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/31369/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/31369/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3641 and its subdirectories -I: Current time: Fri Nov 29 04:41:33 -12 2024 -I: pbuilder-time-stamp: 1732898493 +I: removing directory /srv/workspace/pbuilder/31369 and its subdirectories +I: Current time: Fri Jan 2 13:17:47 +14 2026 +I: pbuilder-time-stamp: 1767309467