Diff of the two buildlogs: -- --- b1/build.log 2024-04-24 13:20:36.839394192 +0000 +++ b2/build.log 2024-04-24 13:25:02.668079573 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue May 27 07:41:10 -12 2025 -I: pbuilder-time-stamp: 1748374870 +I: Current time: Thu Apr 25 03:20:39 +14 2024 +I: pbuilder-time-stamp: 1713964839 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -31,54 +31,86 @@ dpkg-source: info: applying hardening.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/18400/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1567/tmp/hooks/D01_modify_environment starting +debug: Running on ionos2-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 24 13:20 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1567/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1567/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=10 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='56f76d0652ea491e8327c06c477cb5e5' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='18400' - PS1='# ' - PS2='> ' + INVOCATION_ID=5855d72d939642feb80798f0b7381463 + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1567 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.zqYFijOF/pbuilderrc_XgXU --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.zqYFijOF/b1 --logfile b1/build.log libslow5lib_0.7.0+dfsg-2.1.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.zqYFijOF/pbuilderrc_DTIy --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.zqYFijOF/b2 --logfile b2/build.log libslow5lib_0.7.0+dfsg-2.1.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos6-i386 6.1.0-20-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-20-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 26 17:47 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/18400/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Apr 21 07:13 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1567/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -231,7 +263,7 @@ Get: 93 http://deb.debian.org/debian trixie/main i386 python3-all-dev i386 3.11.6-1 [1080 B] Get: 94 http://deb.debian.org/debian trixie/main i386 python3-numpy i386 1:1.24.2-2 [4879 kB] Get: 95 http://deb.debian.org/debian trixie/main i386 python3-wheel all 0.43.0-1 [52.5 kB] -Fetched 77.6 MB in 1s (93.8 MB/s) +Fetched 77.6 MB in 1s (70.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.11-minimal:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19876 files and directories currently installed.) @@ -546,8 +578,8 @@ Setting up tzdata (2024a-1) ... Current default time zone: 'Etc/UTC' -Local time is now: Tue May 27 19:41:38 UTC 2025. -Universal Time is now: Tue May 27 19:41:38 UTC 2025. +Local time is now: Wed Apr 24 13:21:14 UTC 2024. +Universal Time is now: Wed Apr 24 13:21:14 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... @@ -637,7 +669,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/libslow5lib-0.7.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libslow5lib_0.7.0+dfsg-2.1_source.changes +I: user script /srv/workspace/pbuilder/1567/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/1567/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/libslow5lib-0.7.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libslow5lib_0.7.0+dfsg-2.1_source.changes dpkg-buildpackage: info: source package libslow5lib dpkg-buildpackage: info: source version 0.7.0+dfsg-2.1 dpkg-buildpackage: info: source distribution unstable @@ -700,7 +736,7 @@ -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done --- Configuring done (0.4s) +-- Configuring done (0.7s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -738,7 +774,7 @@ -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done --- Configuring done (0.4s) +-- Configuring done (0.7s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -766,7 +802,7 @@ debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg' dh_auto_build - cd obj-i686-linux-gnu && make -j22 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-i686-linux-gnu && make -j10 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/libslow5lib-0.7.0+dfsg -B/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu/CMakeFiles /build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu//CMakeFiles/progress.marks @@ -775,31 +811,31 @@ make -f CMakeFiles/slow5_static.dir/build.make CMakeFiles/slow5_static.dir/depend make -f CMakeFiles/slow5.dir/build.make CMakeFiles/slow5.dir/depend make[4]: Entering directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu' -cd /build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libslow5lib-0.7.0+dfsg /build/reproducible-path/libslow5lib-0.7.0+dfsg /build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu/CMakeFiles/slow5_static.dir/DependInfo.cmake "--color=" -make[4]: Entering directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libslow5lib-0.7.0+dfsg /build/reproducible-path/libslow5lib-0.7.0+dfsg /build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu/CMakeFiles/slow5.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu' +cd /build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libslow5lib-0.7.0+dfsg /build/reproducible-path/libslow5lib-0.7.0+dfsg /build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu/CMakeFiles/slow5_static.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu' -make -f CMakeFiles/slow5_static.dir/build.make CMakeFiles/slow5_static.dir/build make[4]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu' +make -f CMakeFiles/slow5_static.dir/build.make CMakeFiles/slow5_static.dir/build make -f CMakeFiles/slow5.dir/build.make CMakeFiles/slow5.dir/build make[4]: Entering directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu' make[4]: Entering directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu' [ 10%] Building C object CMakeFiles/slow5_static.dir/src/slow5.c.o [ 20%] Building C object CMakeFiles/slow5_static.dir/src/slow5_misc.c.o +[ 30%] Building C object CMakeFiles/slow5_static.dir/src/slow5_press.c.o /usr/bin/cc -D_GLIBCXX_DEBUG -I/build/reproducible-path/libslow5lib-0.7.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5_static.dir/src/slow5.c.o -MF CMakeFiles/slow5_static.dir/src/slow5.c.o.d -o CMakeFiles/slow5_static.dir/src/slow5.c.o -c /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5.c -[ 30%] Building C object CMakeFiles/slow5_static.dir/src/slow5_idx.c.o -[ 40%] Building C object CMakeFiles/slow5.dir/src/slow5_idx.c.o -[ 50%] Building C object CMakeFiles/slow5.dir/src/slow5.c.o /usr/bin/cc -D_GLIBCXX_DEBUG -I/build/reproducible-path/libslow5lib-0.7.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5_static.dir/src/slow5_misc.c.o -MF CMakeFiles/slow5_static.dir/src/slow5_misc.c.o.d -o CMakeFiles/slow5_static.dir/src/slow5_misc.c.o -c /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5_misc.c -[ 60%] Building C object CMakeFiles/slow5_static.dir/src/slow5_press.c.o -[ 70%] Building C object CMakeFiles/slow5.dir/src/slow5_misc.c.o -/usr/bin/cc -D_GLIBCXX_DEBUG -I/build/reproducible-path/libslow5lib-0.7.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5_static.dir/src/slow5_idx.c.o -MF CMakeFiles/slow5_static.dir/src/slow5_idx.c.o.d -o CMakeFiles/slow5_static.dir/src/slow5_idx.c.o -c /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5_idx.c -/usr/bin/cc -D_GLIBCXX_DEBUG -Dslow5_EXPORTS -I/build/reproducible-path/libslow5lib-0.7.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -fPIC -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5.dir/src/slow5_idx.c.o -MF CMakeFiles/slow5.dir/src/slow5_idx.c.o.d -o CMakeFiles/slow5.dir/src/slow5_idx.c.o -c /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5_idx.c -/usr/bin/cc -D_GLIBCXX_DEBUG -Dslow5_EXPORTS -I/build/reproducible-path/libslow5lib-0.7.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -fPIC -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5.dir/src/slow5.c.o -MF CMakeFiles/slow5.dir/src/slow5.c.o.d -o CMakeFiles/slow5.dir/src/slow5.c.o -c /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5.c -[ 80%] Building C object CMakeFiles/slow5.dir/src/slow5_press.c.o +[ 40%] Building C object CMakeFiles/slow5.dir/src/slow5_misc.c.o /usr/bin/cc -D_GLIBCXX_DEBUG -I/build/reproducible-path/libslow5lib-0.7.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5_static.dir/src/slow5_press.c.o -MF CMakeFiles/slow5_static.dir/src/slow5_press.c.o.d -o CMakeFiles/slow5_static.dir/src/slow5_press.c.o -c /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5_press.c /usr/bin/cc -D_GLIBCXX_DEBUG -Dslow5_EXPORTS -I/build/reproducible-path/libslow5lib-0.7.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -fPIC -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5.dir/src/slow5_misc.c.o -MF CMakeFiles/slow5.dir/src/slow5_misc.c.o.d -o CMakeFiles/slow5.dir/src/slow5_misc.c.o -c /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5_misc.c +[ 60%] Building C object CMakeFiles/slow5_static.dir/src/slow5_idx.c.o +[ 80%] Building C object CMakeFiles/slow5.dir/src/slow5.c.o +[ 80%] Building C object CMakeFiles/slow5.dir/src/slow5_press.c.o +[ 80%] Building C object CMakeFiles/slow5.dir/src/slow5_idx.c.o +/usr/bin/cc -D_GLIBCXX_DEBUG -Dslow5_EXPORTS -I/build/reproducible-path/libslow5lib-0.7.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -fPIC -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5.dir/src/slow5.c.o -MF CMakeFiles/slow5.dir/src/slow5.c.o.d -o CMakeFiles/slow5.dir/src/slow5.c.o -c /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5.c +/usr/bin/cc -D_GLIBCXX_DEBUG -Dslow5_EXPORTS -I/build/reproducible-path/libslow5lib-0.7.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -fPIC -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5.dir/src/slow5_idx.c.o -MF CMakeFiles/slow5.dir/src/slow5_idx.c.o.d -o CMakeFiles/slow5.dir/src/slow5_idx.c.o -c /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5_idx.c /usr/bin/cc -D_GLIBCXX_DEBUG -Dslow5_EXPORTS -I/build/reproducible-path/libslow5lib-0.7.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -fPIC -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5.dir/src/slow5_press.c.o -MF CMakeFiles/slow5.dir/src/slow5_press.c.o.d -o CMakeFiles/slow5.dir/src/slow5_press.c.o -c /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5_press.c +/usr/bin/cc -D_GLIBCXX_DEBUG -I/build/reproducible-path/libslow5lib-0.7.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5_static.dir/src/slow5_idx.c.o -MF CMakeFiles/slow5_static.dir/src/slow5_idx.c.o.d -o CMakeFiles/slow5_static.dir/src/slow5_idx.c.o -c /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5_idx.c /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5_press.c: In function ‘ptr_depress_svb_zd’: /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5_press.c:1125:31: warning: passing argument 2 of ‘zigzag_delta_decode’ from incompatible pointer type [-Wincompatible-pointer-types] 1125 | zigzag_delta_decode(diff, orig, length, 0); @@ -832,6 +868,16 @@ /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5.c:2461:9: note: in expansion of macro ‘SLOW5_ERROR’ 2461 | SLOW5_ERROR("Failed to pread '%zu' bytes at offset '%zu' from slow5 file '%s'.", | ^~~~~~~~~~~ +/build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5.c: In function ‘slow5_rec_aux_parse’: +/build/reproducible-path/libslow5lib-0.7.0+dfsg/include/slow5/slow5_error.h:80:28: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] + 80 | #define SLOW5_ERROR_PREFIX "[%s::ERROR]\033[1;31m " + | ^~~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/libslow5lib-0.7.0+dfsg/include/slow5/slow5_error.h:117:25: note: in expansion of macro ‘SLOW5_ERROR_PREFIX’ + 117 | fprintf(stderr, SLOW5_ERROR_PREFIX msg SLOW5_NO_COLOUR \ + | ^~~~~~~~~~~~~~~~~~ +/build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5.c:3083:17: note: in expansion of macro ‘SLOW5_ERROR’ + 3083 | SLOW5_ERROR("Auxiliary field '%s' is missing in record. At offset '%" PRIu64 "' and record size is '%" PRIu64 "'.", aux_meta->attrs[i], offset, read_size); + | ^~~~~~~~~~~ In file included from /build/reproducible-path/libslow5lib-0.7.0+dfsg/include/slow5/slow5.h:55, from /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5.c:40: /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5.c: In function ‘slow5_get_mem’: @@ -854,29 +900,19 @@ /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5.c:3083:17: note: in expansion of macro ‘SLOW5_ERROR’ 3083 | SLOW5_ERROR("Auxiliary field '%s' is missing in record. At offset '%" PRIu64 "' and record size is '%" PRIu64 "'.", aux_meta->attrs[i], offset, read_size); | ^~~~~~~~~~~ -/build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5.c: In function ‘slow5_rec_aux_parse’: -/build/reproducible-path/libslow5lib-0.7.0+dfsg/include/slow5/slow5_error.h:80:28: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] - 80 | #define SLOW5_ERROR_PREFIX "[%s::ERROR]\033[1;31m " - | ^~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/libslow5lib-0.7.0+dfsg/include/slow5/slow5_error.h:117:25: note: in expansion of macro ‘SLOW5_ERROR_PREFIX’ - 117 | fprintf(stderr, SLOW5_ERROR_PREFIX msg SLOW5_NO_COLOUR \ - | ^~~~~~~~~~~~~~~~~~ -/build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5.c:3083:17: note: in expansion of macro ‘SLOW5_ERROR’ - 3083 | SLOW5_ERROR("Auxiliary field '%s' is missing in record. At offset '%" PRIu64 "' and record size is '%" PRIu64 "'.", aux_meta->attrs[i], offset, read_size); - | ^~~~~~~~~~~ -[ 90%] Linking C static library libslow5_static.a -/usr/bin/cmake -P CMakeFiles/slow5_static.dir/cmake_clean_target.cmake -[100%] Linking C shared library libslow5.so +[ 90%] Linking C shared library libslow5.so /usr/bin/cmake -E cmake_link_script CMakeFiles/slow5.dir/link.txt --verbose=1 -/usr/bin/cmake -E cmake_link_script CMakeFiles/slow5_static.dir/link.txt --verbose=1 /usr/bin/cc -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libslow5.so.0 -o libslow5.so.0 CMakeFiles/slow5.dir/src/slow5.c.o CMakeFiles/slow5.dir/src/slow5_idx.c.o CMakeFiles/slow5.dir/src/slow5_misc.c.o CMakeFiles/slow5.dir/src/slow5_press.c.o -lzstd +/usr/bin/cmake -E cmake_symlink_library libslow5.so.0 libslow5.so.0 libslow5.so +make[4]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu' +[ 90%] Built target slow5 +[100%] Linking C static library libslow5_static.a +/usr/bin/cmake -P CMakeFiles/slow5_static.dir/cmake_clean_target.cmake +/usr/bin/cmake -E cmake_link_script CMakeFiles/slow5_static.dir/link.txt --verbose=1 /usr/bin/ar qc libslow5_static.a CMakeFiles/slow5_static.dir/src/slow5.c.o CMakeFiles/slow5_static.dir/src/slow5_idx.c.o CMakeFiles/slow5_static.dir/src/slow5_misc.c.o CMakeFiles/slow5_static.dir/src/slow5_press.c.o /usr/bin/ranlib libslow5_static.a make[4]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu' [100%] Built target slow5_static -/usr/bin/cmake -E cmake_symlink_library libslow5.so.0 libslow5.so.0 libslow5.so -make[4]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu' -[100%] Built target slow5 make[3]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu' @@ -1113,13 +1149,13 @@ python3.12 lib.linux-x86_64-cpython-312 test_nonExistant_aux (python.test.TestAUX.test_nonExistant_aux) ... [slow5_idx_init::INFO] Index file not found. Creating an index at 'examples/example2.slow5.idx'. -27-May-25 07:43:26 - [WARNING]: get_read unknown aux name: noExistTest +25-Apr-24 03:24:38 - [WARNING]: get_read unknown aux name: noExistTest ok -test_read_id (python.test.TestAUX.test_read_id) ... 27-May-25 07:43:26 - [WARNING]: get_read unknown aux name: noExistTest +test_read_id (python.test.TestAUX.test_read_id) ... 25-Apr-24 03:24:38 - [WARNING]: get_read unknown aux name: noExistTest ok -test_read_number (python.test.TestAUX.test_read_number) ... 27-May-25 07:43:26 - [WARNING]: get_read unknown aux name: noExistTest +test_read_number (python.test.TestAUX.test_read_number) ... 25-Apr-24 03:24:38 - [WARNING]: get_read unknown aux name: noExistTest ok -test_start_mux (python.test.TestAUX.test_start_mux) ... 27-May-25 07:43:26 - [WARNING]: get_read unknown aux name: noExistTest +test_start_mux (python.test.TestAUX.test_start_mux) ... 25-Apr-24 03:24:38 - [WARNING]: get_read unknown aux name: noExistTest ok test_get_aux_names (python.test.TestAuxAll.test_get_aux_names) ... ok test_get_aux_types (python.test.TestAuxAll.test_get_aux_types) ... ok @@ -1164,7 +1200,7 @@ test_get_reads_multi (python.test.testMultiThreadingRandom.test_get_reads_multi) ... ok ---------------------------------------------------------------------- -Ran 42 tests in 0.556s +Ran 42 tests in 1.273s OK r0 @@ -1188,7 +1224,7 @@ dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install -O--buildsystem=cmake - cd obj-i686-linux-gnu && make -j22 install DESTDIR=/build/reproducible-path/libslow5lib-0.7.0\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-i686-linux-gnu && make -j10 install DESTDIR=/build/reproducible-path/libslow5lib-0.7.0\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/libslow5lib-0.7.0+dfsg -B/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -1258,28 +1294,28 @@ dpkg-shlibdeps: warning: symbol deflate used by debian/libslow5-0t64/usr/lib/i386-linux-gnu/libslow5.so.0 found in none of the libraries dpkg-shlibdeps: warning: symbol deflateReset used by debian/libslow5-0t64/usr/lib/i386-linux-gnu/libslow5.so.0 found in none of the libraries dpkg-shlibdeps: warning: symbol deflateInit2_ used by debian/libslow5-0t64/usr/lib/i386-linux-gnu/libslow5.so.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol inflateEnd used by debian/libslow5-0t64/usr/lib/i386-linux-gnu/libslow5.so.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol streamvbyte_encode used by debian/libslow5-0t64/usr/lib/i386-linux-gnu/libslow5.so.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol inflateReset used by debian/libslow5-0t64/usr/lib/i386-linux-gnu/libslow5.so.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol inflateInit2_ used by debian/libslow5-0t64/usr/lib/i386-linux-gnu/libslow5.so.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol zigzag_delta_encode used by debian/libslow5-0t64/usr/lib/i386-linux-gnu/libslow5.so.0 found in none of the libraries dpkg-shlibdeps: warning: symbol zigzag_delta_decode used by debian/libslow5-0t64/usr/lib/i386-linux-gnu/libslow5.so.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol streamvbyte_decode used by debian/libslow5-0t64/usr/lib/i386-linux-gnu/libslow5.so.0 found in none of the libraries dpkg-shlibdeps: warning: symbol inflate used by debian/libslow5-0t64/usr/lib/i386-linux-gnu/libslow5.so.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol zigzag_delta_encode used by debian/libslow5-0t64/usr/lib/i386-linux-gnu/libslow5.so.0 found in none of the libraries -dpkg-shlibdeps: warning: symbol deflateEnd used by debian/libslow5-0t64/usr/lib/i386-linux-gnu/libslow5.so.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol streamvbyte_decode used by debian/libslow5-0t64/usr/lib/i386-linux-gnu/libslow5.so.0 found in none of the libraries +dpkg-shlibdeps: warning: symbol streamvbyte_encode used by debian/libslow5-0t64/usr/lib/i386-linux-gnu/libslow5.so.0 found in none of the libraries dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all) dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake +dpkg-gencontrol: warning: package libslow5-0t64: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: Depends field of package libslow5-dev: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package libslow5-dev: substitution variable ${devlibs:Depends} unused, but is defined dpkg-gencontrol: warning: package libslow5-dev: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package libslow5-0t64: substitution variable ${python3:Depends} unused, but is defined -dpkg-gencontrol: warning: package libslow5-0t64: substitution variable ${python3:Depends} unused, but is defined dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake -dpkg-deb: building package 'libslow5-0t64' in '../libslow5-0t64_0.7.0+dfsg-2.1_i386.deb'. -dpkg-deb: building package 'libslow5-0t64-dbgsym' in '../libslow5-0t64-dbgsym_0.7.0+dfsg-2.1_i386.deb'. dpkg-deb: building package 'libslow5-dev' in '../libslow5-dev_0.7.0+dfsg-2.1_i386.deb'. dpkg-deb: building package 'python3-slow5' in '../python3-slow5_0.7.0+dfsg-2.1_i386.deb'. +dpkg-deb: building package 'libslow5-0t64' in '../libslow5-0t64_0.7.0+dfsg-2.1_i386.deb'. dpkg-deb: building package 'python3-slow5-dbgsym' in '../python3-slow5-dbgsym_0.7.0+dfsg-2.1_i386.deb'. +dpkg-deb: building package 'libslow5-0t64-dbgsym' in '../libslow5-0t64-dbgsym_0.7.0+dfsg-2.1_i386.deb'. dpkg-genbuildinfo --build=binary -O../libslow5lib_0.7.0+dfsg-2.1_i386.buildinfo dpkg-genchanges --build=binary -O../libslow5lib_0.7.0+dfsg-2.1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1287,12 +1323,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1567/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1567/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/18400 and its subdirectories -I: Current time: Tue May 27 07:43:35 -12 2025 -I: pbuilder-time-stamp: 1748375015 +I: removing directory /srv/workspace/pbuilder/1567 and its subdirectories +I: Current time: Thu Apr 25 03:25:01 +14 2024 +I: pbuilder-time-stamp: 1713965101