Diff of the two buildlogs: -- --- b1/build.log 2024-12-06 00:17:41.188243584 +0000 +++ b2/build.log 2024-12-06 00:21:40.461424081 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Dec 5 12:13:36 -12 2024 -I: pbuilder-time-stamp: 1733444016 +I: Current time: Thu Jan 8 20:40:40 +14 2026 +I: pbuilder-time-stamp: 1767854440 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -27,53 +27,85 @@ dpkg-source: info: unpacking libcifpp_7.0.7-3.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/26042/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/14530/tmp/hooks/D01_modify_environment starting +debug: Running on infom08-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jan 8 06:40 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/14530/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/14530/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=6 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=5 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='96d7f78e01224f4699d8d3507010e502' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='26042' - PS1='# ' - PS2='> ' + INVOCATION_ID=cf3c61fa976e471db742cccf2455f246 + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=14530 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ljYbmH1v/pbuilderrc_e03A --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ljYbmH1v/b1 --logfile b1/build.log libcifpp_7.0.7-3.dsc' - SUDO_GID='111' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ljYbmH1v/pbuilderrc_Pyqi --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ljYbmH1v/b2 --logfile b2/build.log libcifpp_7.0.7-3.dsc' + SUDO_GID=111 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' I: uname -a - Linux infom07-i386 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/26042/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/14530/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -342,7 +374,7 @@ Get: 209 http://deb.debian.org/debian trixie/main i386 python3-sphinxcontrib.jquery all 4.1-5 [7348 B] Get: 210 http://deb.debian.org/debian trixie/main i386 python3-sphinx-rtd-theme all 3.0.2+dfsg-1 [29.5 kB] Get: 211 http://deb.debian.org/debian trixie/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1+b1 [916 kB] -Fetched 177 MB in 5s (35.7 MB/s) +Fetched 177 MB in 5s (32.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package fonts-lato. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19956 files and directories currently installed.) @@ -1037,8 +1069,8 @@ Setting up tzdata (2024b-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Fri Dec 6 00:14:32 UTC 2024. -Universal Time is now: Fri Dec 6 00:14:32 UTC 2024. +Local time is now: Thu Jan 8 06:41:21 UTC 2026. +Universal Time is now: Thu Jan 8 06:41:21 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... @@ -1229,7 +1261,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/libcifpp-7.0.7/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libcifpp_7.0.7-3_source.changes +I: user script /srv/workspace/pbuilder/14530/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/14530/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/libcifpp-7.0.7/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libcifpp_7.0.7-3_source.changes dpkg-buildpackage: info: source package libcifpp dpkg-buildpackage: info: source version 7.0.7-3 dpkg-buildpackage: info: source distribution unstable @@ -1294,8 +1330,8 @@ -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Found Doxygen: /usr/bin/doxygen (found version "1.9.8") found components: doxygen dot -- Found Sphinx: /usr/bin/sphinx-build --- Configuring done (16.0s) --- Generating done (0.1s) +-- Configuring done (7.3s) +-- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -1312,7 +1348,7 @@ export http_proxy=127.0.0.1:9 export https_proxy=127.0.0.1:9 dh_auto_build - cd obj-i686-linux-gnu && make -j6 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-i686-linux-gnu && make -j5 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/libcifpp-7.0.7 -B/build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu/CMakeFiles /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu//CMakeFiles/progress.marks @@ -1320,37 +1356,33 @@ make[3]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu' make -f CMakeFiles/cifpp.dir/build.make CMakeFiles/cifpp.dir/depend make -f docs/CMakeFiles/Doxygen-libcifpp.dir/build.make docs/CMakeFiles/Doxygen-libcifpp.dir/depend -make -f docs/CMakeFiles/Sphinx-libcifpp.dir/build.make docs/CMakeFiles/Sphinx-libcifpp.dir/depend make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu' cd /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.7 /build/reproducible-path/libcifpp-7.0.7 /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu/CMakeFiles/cifpp.dir/DependInfo.cmake "--color=" +make -f docs/CMakeFiles/Sphinx-libcifpp.dir/build.make docs/CMakeFiles/Sphinx-libcifpp.dir/depend make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu' cd /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.7 /build/reproducible-path/libcifpp-7.0.7/docs /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu/docs /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu/docs/CMakeFiles/Doxygen-libcifpp.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu' cd /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.7 /build/reproducible-path/libcifpp-7.0.7/docs /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu/docs /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu/docs/CMakeFiles/Sphinx-libcifpp.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu' make -f docs/CMakeFiles/Doxygen-libcifpp.dir/build.make docs/CMakeFiles/Doxygen-libcifpp.dir/build +make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu' make -f CMakeFiles/cifpp.dir/build.make CMakeFiles/cifpp.dir/build -make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu' -make -f docs/CMakeFiles/Sphinx-libcifpp.dir/build.make docs/CMakeFiles/Sphinx-libcifpp.dir/build -make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu' -make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu' make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu' -[ 2%] Generating xml -[ 4%] Building CXX object CMakeFiles/cifpp.dir/src/condition.cpp.o -cd /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu/docs && /usr/bin/cmake -E make_directory /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu/docs/xml +[ 2%] Building CXX object CMakeFiles/cifpp.dir/src/condition.cpp.o /usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/condition.cpp.o -MF CMakeFiles/cifpp.dir/src/condition.cpp.o.d -o CMakeFiles/cifpp.dir/src/condition.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/condition.cpp -[ 9%] Generating xml -[ 9%] Building CXX object CMakeFiles/cifpp.dir/src/category.cpp.o -[ 11%] Building CXX object CMakeFiles/cifpp.dir/src/datablock.cpp.o -[ 13%] Building CXX object CMakeFiles/cifpp.dir/src/dictionary_parser.cpp.o -/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/category.cpp.o -MF CMakeFiles/cifpp.dir/src/category.cpp.o.d -o CMakeFiles/cifpp.dir/src/category.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/category.cpp +[ 4%] Generating xml cd /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu/docs && /usr/bin/cmake -E make_directory /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu/docs/xml +[ 6%] Building CXX object CMakeFiles/cifpp.dir/src/category.cpp.o +[ 9%] Building CXX object CMakeFiles/cifpp.dir/src/datablock.cpp.o +/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/category.cpp.o -MF CMakeFiles/cifpp.dir/src/category.cpp.o.d -o CMakeFiles/cifpp.dir/src/category.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/category.cpp /usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/datablock.cpp.o -MF CMakeFiles/cifpp.dir/src/datablock.cpp.o.d -o CMakeFiles/cifpp.dir/src/datablock.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/datablock.cpp -/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/dictionary_parser.cpp.o -MF CMakeFiles/cifpp.dir/src/dictionary_parser.cpp.o.d -o CMakeFiles/cifpp.dir/src/dictionary_parser.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/dictionary_parser.cpp -[ 15%] Generating docs +make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu' +make -f docs/CMakeFiles/Sphinx-libcifpp.dir/build.make docs/CMakeFiles/Sphinx-libcifpp.dir/build +make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu' +[ 11%] Generating docs cd /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu/docs && /usr/bin/doxygen /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu/docs/Doxyfile -[ 18%] Generating docs +[ 13%] Generating docs cd /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu/docs && /usr/bin/doxygen /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu/docs/Doxyfile Doxygen version used: 1.9.8 Searching for include files... @@ -1562,7 +1594,11 @@ Generating code for file cif++/pdb/io.hpp... Generating code for file cif++/pdb/pdb2cif.hpp... Generating code for file cif++/pdb/tls.hpp... -Generating code for file c7/include/cif++/pdb/tls.hpp... +Generating code for file c/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:161: warning: Member make_error_code(validation_error e) (function) of namespace cif is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:166: warning: Member make_error_condition(validation_error e) (function) of namespace cif is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:161: warning: Member make_error_code(validation_error e) (function) of namespace cif is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:166: warning: Member make_error_condition(validation_error e) (function) of namespace cif is not documented. +7/include/cif++/pdb/tls.hpp... Parsing file /build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb/tls.hpp... Preprocessing /build/reproducible-path/libcifpp-7.0.7/include/cif++/point.hpp... Parsing file /build/reproducible-path/libcifpp-7.0.7/include/cif++/point.hpp... @@ -1658,26 +1694,10 @@ Generating code for file cif++/pdb/io.hpp... Generating code for file cif++/pdb/pdb2cif.hpp... Generating code for file cif++/pdb/tls.hpp... -Generating code for file c/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:161: warning: Member make_error_code(validation_error e) (function) of namespace cif is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:166: warning: Member make_error_condition(validation_error e) (function) of namespace cif is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:161: warning: Member make_error_code(validation_error e) (function) of namespace cif is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:166: warning: Member make_error_condition(validation_error e) (function) of namespace cif is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:161: warning: Member make_error_code(validation_error e) (function) of namespace cif is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:166: warning: Member make_error_condition(validation_error e) (function) of namespace cif is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:161: warning: Member make_error_code(validation_error e) (function) of namespace cif is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:166: warning: Member make_error_condition(validation_error e) (function) of namespace cif is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/category.hpp:975: warning: Member value_provider_type (typedef) of class cif::category is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/category.hpp:153: warning: Member operator=(category rhs) (function) of class cif::category is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/category.hpp:975: warning: Member value_provider_type (typedef) of class cif::category is not documented. +Generating code for file c/build/reproducible-path/libcifpp-7.0.7/include/cif++/category.hpp:975: warning: Member value_provider_type (typedef) of class cif::category is not documented. /build/reproducible-path/libcifpp-7.0.7/include/cif++/category.hpp:153: warning: Member operator=(category rhs) (function) of class cif::category is not documented. /build/reproducible-path/libcifpp-7.0.7/include/cif++/category.hpp:164: warning: Member swap(category &a, category &b) noexcept (friend) of class cif::category is not documented. /build/reproducible-path/libcifpp-7.0.7/include/cif++/compound.hpp:175: warning: Member one_letter_code() const (function) of class cif::compound is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/category.hpp:164: warning: Member swap(category &a, category &b) noexcept (friend) of class cif::category is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/compound.hpp:274: warning: Member is_water(std::string_view res_name) const (function) of class cif::compound_factory is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/compound.hpp:292: warning: Member report_missing_compound(std::string_view compound_id) (function) of class cif::compound_factory is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/compound.hpp:327: warning: Member compound_source(const cif::file &file) (function) of class cif::compound_source is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/compound.hpp:175: warning: Member one_letter_code() const (function) of class cif::compound is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/datablock.hpp:77: warning: Member swap_(datablock &a, datablock &b) noexcept (friend) of class cif::datablock is not documented. /build/reproducible-path/libcifpp-7.0.7/include/cif++/compound.hpp:274: warning: Member is_water(std::string_view res_name) const (function) of class cif::compound_factory is not documented. /build/reproducible-path/libcifpp-7.0.7/include/cif++/compound.hpp:292: warning: Member report_missing_compound(std::string_view compound_id) (function) of class cif::compound_factory is not documented. /build/reproducible-path/libcifpp-7.0.7/include/cif++/compound.hpp:327: warning: Member compound_source(const cif::file &file) (function) of class cif::compound_source is not documented. @@ -1685,9 +1705,6 @@ /build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:280: warning: Member item_alias(const std::string &alias_name, const std::string &dictionary, const std::string &version) (function) of struct cif::item_alias is not documented. /build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:287: warning: Member item_alias(const item_alias &)=default (function) of struct cif::item_alias is not documented. /build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:288: warning: Member operator=(const item_alias &)=default (function) of struct cif::item_alias is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:280: warning: Member item_alias(const std::string &alias_name, const std::string &dictionary, const std::string &version) (function) of struct cif::item_alias is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:287: warning: Member item_alias(const item_alias &)=default (function) of struct cif::item_alias is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:288: warning: Member operator=(const item_alias &)=default (function) of struct cif::item_alias is not documented. /build/reproducible-path/libcifpp-7.0.7/include/cif++/category.hpp:87: warning: Member get_key() const noexcept (function) of class cif::missing_key_error is not documented. if++/point.hpp... Generating code for file cif++/row.hpp... @@ -1775,7 +1792,28 @@ Generating docs for compound cif::parser... Generating docs for compound cif::point_type... Generating docs for compound cif::progress_bar... -G/build/reproducible-path/libcifpp-7.0.7/include/cif++/category.hpp:87: warning: Member get_key() const noexcept (function) of class cif::missing_key_error is not documented. +G/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:176: warning: Member validation_exception(validation_error err) (function) of class cif::validation_exception is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:181: warning: Member validation_exception(validation_error err, std::string_view category) (function) of class cif::validation_exception is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:186: warning: Member validation_exception(validation_error err, std::string_view category, std::string_view item) (function) of class cif::validation_exception is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:191: warning: Member validation_exception(std::error_code ec) (function) of class cif::validation_exception is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:193: warning: Member validation_exception(std::error_code ec, std::string_view category) (function) of class cif::validation_exception is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:195: warning: Member validation_exception(std::error_code ec, std::string_view category, std::string_view item) (function) of class cif::validation_exception is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:161: warning: Member make_error_code(validation_error e) (function) of namespace cif is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:166: warning: Member make_error_condition(validation_error e) (function) of namespace cif is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:161: warning: Member make_error_code(validation_error e) (function) of namespace cif is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:166: warning: Member make_error_condition(validation_error e) (function) of namespace cif is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/category.hpp:975: warning: Member value_provider_type (typedef) of class cif::category is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/category.hpp:153: warning: Member operator=(category rhs) (function) of class cif::category is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/category.hpp:164: warning: Member swap(category &a, category &b) noexcept (friend) of class cif::category is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/compound.hpp:175: warning: Member one_letter_code() const (function) of class cif::compound is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/compound.hpp:274: warning: Member is_water(std::string_view res_name) const (function) of class cif::compound_factory is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/compound.hpp:292: warning: Member report_missing_compound(std::string_view compound_id) (function) of class cif::compound_factory is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/compound.hpp:327: warning: Member compound_source(const cif::file &file) (function) of class cif::compound_source is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/datablock.hpp:77: warning: Member swap_(datablock &a, datablock &b) noexcept (friend) of class cif::datablock is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:280: warning: Member item_alias(const std::string &alias_name, const std::string &dictionary, const std::string &version) (function) of struct cif::item_alias is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:287: warning: Member item_alias(const item_alias &)=default (function) of struct cif::item_alias is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:288: warning: Member operator=(const item_alias &)=default (function) of struct cif::item_alias is not documented. +/build/reproducible-path/libcifpp-7.0.7/include/cif++/category.hpp:87: warning: Member get_key() const noexcept (function) of class cif::missing_key_error is not documented. if++/point.hpp... Generating code for file cif++/row.hpp... Generating code for file cif++/symmetry.hpp... @@ -1868,12 +1906,6 @@ /build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:191: warning: Member validation_exception(std::error_code ec) (function) of class cif::validation_exception is not documented. /build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:193: warning: Member validation_exception(std::error_code ec, std::string_view category) (function) of class cif::validation_exception is not documented. /build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:195: warning: Member validation_exception(std::error_code ec, std::string_view category, std::string_view item) (function) of class cif::validation_exception is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:176: warning: Member validation_exception(validation_error err) (function) of class cif::validation_exception is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:181: warning: Member validation_exception(validation_error err, std::string_view category) (function) of class cif::validation_exception is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:186: warning: Member validation_exception(validation_error err, std::string_view category, std::string_view item) (function) of class cif::validation_exception is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:191: warning: Member validation_exception(std::error_code ec) (function) of class cif::validation_exception is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:193: warning: Member validation_exception(std::error_code ec, std::string_view category) (function) of class cif::validation_exception is not documented. -/build/reproducible-path/libcifpp-7.0.7/include/cif++/validate.hpp:195: warning: Member validation_exception(std::error_code ec, std::string_view category, std::string_view item) (function) of class cif::validation_exception is not documented. enerating docs for compound cif::quaternion_type... Generating docs for compound cif::row... Generating docs for compound cif::row_handle... @@ -1953,7 +1985,19 @@ Generating XML output for class cif::item_value Generating XML output for class cif::iterator_impl Generating XML output for class cif::iterator_impl< Category > -Generating XML output for class cif::iterator_impl< Caenerating docs for compound cif::quaternion_type... +Generating XML output for class cif::iterator_impl< Ca/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:108: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::reconstruct_pdbx(file &pdbx_file, std::string_view dictionary="mmcif_pdbx") +/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:108: warning: The following parameter of cif::pdb::reconstruct_pdbx(file &pdbx_file, std::string_view dictionary="mmcif_pdbx") is not documented: + parameter 'pdbx_file' +/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:120: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary="mmcif_pdbx") +/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:120: warning: The following parameter of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary="mmcif_pdbx") is not documented: + parameter 'pdbx_file' +/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:138: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::error_code &ec) +/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:138: warning: The following parameter of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::error_code &ec) is not documented: + parameter 'pdbx_file' +/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:157: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary, std::error_code &ec) +/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:157: warning: The following parameter of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary, std::error_code &ec) is not documented: + parameter 'pdbx_file' +enerating docs for compound cif::quaternion_type... Generating docs for compound cif::row... Generating docs for compound cif::row_handle... Generating docs for compound cif::row_initializer... @@ -2032,31 +2076,7 @@ Generating XML output for class cif::item_value Generating XML output for class cif::iterator_impl Generating XML output for class cif::iterator_impl< Category > -Generating XML output for class cif::iterator_impl< Ca/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:108: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::reconstruct_pdbx(file &pdbx_file, std::string_view dictionary="mmcif_pdbx") -/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:108: warning: The following parameter of cif::pdb::reconstruct_pdbx(file &pdbx_file, std::string_view dictionary="mmcif_pdbx") is not documented: - parameter 'pdbx_file' -/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:120: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary="mmcif_pdbx") -/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:120: warning: The following parameter of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary="mmcif_pdbx") is not documented: - parameter 'pdbx_file' -/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:138: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::error_code &ec) -/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:138: warning: The following parameter of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::error_code &ec) is not documented: - parameter 'pdbx_file' -/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:157: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary, std::error_code &ec) -/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:157: warning: The following parameter of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary, std::error_code &ec) is not documented: - parameter 'pdbx_file' -/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:108: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::reconstruct_pdbx(file &pdbx_file, std::string_view dictionary="mmcif_pdbx") -/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:108: warning: The following parameter of cif::pdb::reconstruct_pdbx(file &pdbx_file, std::string_view dictionary="mmcif_pdbx") is not documented: - parameter 'pdbx_file' -/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:120: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary="mmcif_pdbx") -/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:120: warning: The following parameter of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary="mmcif_pdbx") is not documented: - parameter 'pdbx_file' -/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:138: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::error_code &ec) -/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:138: warning: The following parameter of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::error_code &ec) is not documented: - parameter 'pdbx_file' -/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:157: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary, std::error_code &ec) -/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:157: warning: The following parameter of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary, std::error_code &ec) is not documented: - parameter 'pdbx_file' -tegory, T > +Generating XML output for class cif::iterator_impl< Category, T > Generating XML output for class cif::iterator_proxy Generating XML output for class cif::key Generating XML output for class cif::category::link @@ -2148,8 +2168,22 @@ type lookup cache used 4688/65536 hits=49233 misses=4934 symbol lookup cache used 5033/65536 hits=61776 misses=5033 finished... -make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu' -[ 18%] Built target Doxygen-libcifpp +[ 15%] Generating documentation with Sphinx +cd /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu/docs && /usr/bin/sphinx-build -b html -Dbreathe_projects.libcifpp=/build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu/docs/xml /build/reproducible-path/libcifpp-7.0.7/docs /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu/docs/sphinx +/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:108: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::reconstruct_pdbx(file &pdbx_file, std::string_view dictionary="mmcif_pdbx") +/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:108: warning: The following parameter of cif::pdb::reconstruct_pdbx(file &pdbx_file, std::string_view dictionary="mmcif_pdbx") is not documented: + parameter 'pdbx_file' +/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:120: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary="mmcif_pdbx") +/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:120: warning: The following parameter of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary="mmcif_pdbx") is not documented: + parameter 'pdbx_file' +/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:138: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::error_code &ec) +/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:138: warning: The following parameter of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::error_code &ec) is not documented: + parameter 'pdbx_file' +/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:157: warning: argument 'file' of command @param is not found in the argument list of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary, std::error_code &ec) +/build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb.hpp:157: warning: The following parameter of cif::pdb::is_valid_pdbx_file(const file &pdbx_file, std::string_view dictionary, std::error_code &ec) is not documented: + parameter 'pdbx_file' +Running Sphinx v7.4.7 +loading translations [en]... done tegory, T > Generating XML output for class cif::iterator_proxy Generating XML output for class cif::key @@ -2235,49 +2269,43 @@ Generating XML output for file utilities.hpp Generating XML output for file validate.hpp Generating XML output for page deprecated -Generate XML output for dir /build/reproduc[ 20%] Building CXX object CMakeFiles/cifpp.dir/src/file.cpp.o -/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/file.cpp.o -MF CMakeFiles/cifpp.dir/src/file.cpp.o.d -o CMakeFiles/cifpp.dir/src/file.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/file.cpp -ible-path/libcifpp-7.0.7/include/cif++/ +Generate XML output for dir /build/reproducible-path/libcifpp-7.0.7/include/cif++/ Generate XML output for dir /build/reproducible-path/libcifpp-7.0.7/include/cif++/pdb/ Running plantuml with JAVA... Running dot... type lookup cache used 4688/65536 hits=49233 misses=4934 symbol lookup cache used 5033/65536 hits=61776 misses=5033 finished... -[ 22%] Generating documentation with Sphinx -cd /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu/docs && /usr/bin/sphinx-build -b html -Dbreathe_projects.libcifpp=/build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu/docs/xml /build/reproducible-path/libcifpp-7.0.7/docs /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu/docs/sphinx -Running Sphinx v7.4.7 -loading translations [en]... done +make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu' +[ 15%] Built target Doxygen-libcifpp +[ 18%] Building CXX object CMakeFiles/cifpp.dir/src/dictionary_parser.cpp.o +/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/dictionary_parser.cpp.o -MF CMakeFiles/cifpp.dir/src/dictionary_parser.cpp.o.d -o CMakeFiles/cifpp.dir/src/dictionary_parser.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/dictionary_parser.cpp /usr/lib/python3/dist-packages/breathe/project.py:116: RemovedInSphinx80Warning: Sphinx 8 will drop support for representing paths as strings. Use "pathlib.Path" or "os.fspath" instead. self._default_build_dir = os.path.dirname(app.doctreedir.rstrip(os.sep)) making output directory... done -[ 25%] Building CXX object CMakeFiles/cifpp.dir/src/item.cpp.o +[ 20%] Building CXX object CMakeFiles/cifpp.dir/src/file.cpp.o +/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/file.cpp.o -MF CMakeFiles/cifpp.dir/src/file.cpp.o.d -o CMakeFiles/cifpp.dir/src/file.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/file.cpp +[ 22%] Building CXX object CMakeFiles/cifpp.dir/src/item.cpp.o /usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/item.cpp.o -MF CMakeFiles/cifpp.dir/src/item.cpp.o.d -o CMakeFiles/cifpp.dir/src/item.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/item.cpp -[ 27%] Building CXX object CMakeFiles/cifpp.dir/src/parser.cpp.o +[ 25%] Building CXX object CMakeFiles/cifpp.dir/src/parser.cpp.o /usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/parser.cpp.o -MF CMakeFiles/cifpp.dir/src/parser.cpp.o.d -o CMakeFiles/cifpp.dir/src/parser.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/parser.cpp -[ 29%] Building CXX object CMakeFiles/cifpp.dir/src/row.cpp.o +[ 27%] Building CXX object CMakeFiles/cifpp.dir/src/row.cpp.o /usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/row.cpp.o -MF CMakeFiles/cifpp.dir/src/row.cpp.o.d -o CMakeFiles/cifpp.dir/src/row.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/row.cpp -[ 31%] Building CXX object CMakeFiles/cifpp.dir/src/validate.cpp.o -/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/validate.cpp.o -MF CMakeFiles/cifpp.dir/src/validate.cpp.o.d -o CMakeFiles/cifpp.dir/src/validate.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/validate.cpp (!) Unabridged API: unexpected kind 'concept' (IGNORED) [~] Exhale: parsing Doxygen XML. -[+] Exhale: finished parsing Doxygen XML in 3.47 seconds. +[+] Exhale: finished parsing Doxygen XML in 3.78 seconds. [~] Exhale: generating reStructuredText documents. -[+] Exhale: generated reStructuredText documents in 2.45 seconds. +[+] Exhale: generated reStructuredText documents in 3.01 seconds. myst v4.0.0: MdParserConfig(commonmark_only=False, gfm_only=False, enable_extensions={'colon_fence'}, disable_syntax=[], all_links_external=False, links_external_new_tab=False, url_schemes=('http', 'https', 'mailto', 'ftp'), ref_domains=None, fence_as_directive=set(), number_code_blocks=[], title_to_header=False, heading_anchors=0, heading_slug_func=None, html_meta={}, footnote_sort=True, footnote_transition=True, words_per_minute=200, substitutions={}, linkify_fuzzy_links=True, dmath_allow_labels=True, dmath_allow_space=True, dmath_allow_digits=True, dmath_double_inline=False, update_mathjax=True, mathjax_classes='tex2jax_process|mathjax_process|math|output_area', enable_checkboxes=False, suppress_warnings=[], highlight_code_blocks=True) building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 8 source files that are out of date updating environment: [new config] 332 added, 0 changed, 0 removed reading sources... [ 0%] api/classcif_1_1atom__type__traits -[ 34%] Building CXX object CMakeFiles/cifpp.dir/src/text.cpp.o +[ 29%] Building CXX object CMakeFiles/cifpp.dir/src/validate.cpp.o +/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/validate.cpp.o -MF CMakeFiles/cifpp.dir/src/validate.cpp.o.d -o CMakeFiles/cifpp.dir/src/validate.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/validate.cpp +[ 31%] Building CXX object CMakeFiles/cifpp.dir/src/text.cpp.o /usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/text.cpp.o -MF CMakeFiles/cifpp.dir/src/text.cpp.o.d -o CMakeFiles/cifpp.dir/src/text.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/text.cpp -[ 36%] Building CXX object CMakeFiles/cifpp.dir/src/utilities.cpp.o -/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/utilities.cpp.o -MF CMakeFiles/cifpp.dir/src/utilities.cpp.o.d -o CMakeFiles/cifpp.dir/src/utilities.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/utilities.cpp -[ 38%] Building CXX object CMakeFiles/cifpp.dir/src/atom_type.cpp.o -/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/atom_type.cpp.o -MF CMakeFiles/cifpp.dir/src/atom_type.cpp.o.d -o CMakeFiles/cifpp.dir/src/atom_type.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/atom_type.cpp -[ 40%] Building CXX object CMakeFiles/cifpp.dir/src/compound.cpp.o -/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/compound.cpp.o -MF CMakeFiles/cifpp.dir/src/compound.cpp.o.d -o CMakeFiles/cifpp.dir/src/compound.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/compound.cpp reading sources... [ 1%] api/classcif_1_1category reading sources... [ 1%] api/classcif_1_1cell reading sources... [ 1%] api/classcif_1_1compound @@ -2285,13 +2313,15 @@ reading sources... [ 2%] api/classcif_1_1compound__source reading sources... [ 2%] api/classcif_1_1condition reading sources... [ 2%] api/classcif_1_1conditional__iterator__proxy -[ 43%] Building CXX object CMakeFiles/cifpp.dir/src/point.cpp.o -/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/point.cpp.o -MF CMakeFiles/cifpp.dir/src/point.cpp.o.d -o CMakeFiles/cifpp.dir/src/point.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/point.cpp reading sources... [ 3%] api/classcif_1_1crystal reading sources... [ 3%] api/classcif_1_1datablock reading sources... [ 3%] api/classcif_1_1duplicate__key__error reading sources... [ 4%] api/classcif_1_1file reading sources... [ 4%] api/classcif_1_1fill__out__streambuf +[ 34%] Building CXX object CMakeFiles/cifpp.dir/src/utilities.cpp.o +/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/utilities.cpp.o -MF CMakeFiles/cifpp.dir/src/utilities.cpp.o.d -o CMakeFiles/cifpp.dir/src/utilities.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/utilities.cpp +[ 36%] Building CXX object CMakeFiles/cifpp.dir/src/atom_type.cpp.o +/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/atom_type.cpp.o -MF CMakeFiles/cifpp.dir/src/atom_type.cpp.o.d -o CMakeFiles/cifpp.dir/src/atom_type.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/atom_type.cpp reading sources... [ 4%] api/classcif_1_1gzio_1_1basic__ifstream reading sources... [ 5%] api/classcif_1_1gzio_1_1basic__igzip__streambuf reading sources... [ 5%] api/classcif_1_1gzio_1_1basic__istream @@ -2299,6 +2329,8 @@ reading sources... [ 5%] api/classcif_1_1gzio_1_1basic__ogzip__streambuf reading sources... [ 6%] api/classcif_1_1gzio_1_1basic__ostream reading sources... [ 6%] api/classcif_1_1gzio_1_1basic__streambuf +[ 38%] Building CXX object CMakeFiles/cifpp.dir/src/compound.cpp.o +/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/compound.cpp.o -MF CMakeFiles/cifpp.dir/src/compound.cpp.o.d -o CMakeFiles/cifpp.dir/src/compound.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/compound.cpp reading sources... [ 6%] api/classcif_1_1identity__matrix reading sources... [ 7%] api/classcif_1_1item reading sources... [ 7%] api/classcif_1_1iterator__impl @@ -2314,18 +2346,12 @@ reading sources... [ 10%] api/classcif_1_1matrix__subtraction reading sources... [ 10%] api/classcif_1_1missing__key__error reading sources... [ 11%] api/classcif_1_1mm_1_1atom -[ 45%] Building CXX object CMakeFiles/cifpp.dir/src/symmetry.cpp.o -/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/symmetry.cpp.o -MF CMakeFiles/cifpp.dir/src/symmetry.cpp.o.d -o CMakeFiles/cifpp.dir/src/symmetry.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/symmetry.cpp reading sources... [ 11%] api/classcif_1_1mm_1_1branch reading sources... [ 11%] api/classcif_1_1mm_1_1monomer reading sources... [ 11%] api/classcif_1_1mm_1_1polymer reading sources... [ 12%] api/classcif_1_1mm_1_1residue -[ 47%] Building CXX object CMakeFiles/cifpp.dir/src/model.cpp.o -/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/model.cpp.o -MF CMakeFiles/cifpp.dir/src/model.cpp.o.d -o CMakeFiles/cifpp.dir/src/model.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/model.cpp reading sources... [ 12%] api/classcif_1_1mm_1_1structure reading sources... [ 12%] api/classcif_1_1mm_1_1sugar -[ 50%] Building CXX object CMakeFiles/cifpp.dir/src/pdb/cif2pdb.cpp.o -/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/pdb/cif2pdb.cpp.o -MF CMakeFiles/cifpp.dir/src/pdb/cif2pdb.cpp.o.d -o CMakeFiles/cifpp.dir/src/pdb/cif2pdb.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/pdb/cif2pdb.cpp reading sources... [ 13%] api/classcif_1_1multiple__results__error reading sources... [ 13%] api/classcif_1_1parse__error reading sources... [ 13%] api/classcif_1_1parser @@ -2403,8 +2429,6 @@ reading sources... [ 35%] api/function_namespacecif_1a04692e2c6a26c3dd823891c93aa68c46 reading sources... [ 35%] api/function_namespacecif_1a07568e2424a8b9f3d87c0e7b506f01c8 reading sources... [ 36%] api/function_namespacecif_1a0987fe676d4bf9554de808bfe9b13a6b -[ 52%] Building CXX object CMakeFiles/cifpp.dir/src/pdb/pdb2cif.cpp.o -/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/pdb/pdb2cif.cpp.o -MF CMakeFiles/cifpp.dir/src/pdb/pdb2cif.cpp.o.d -o CMakeFiles/cifpp.dir/src/pdb/pdb2cif.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/pdb/pdb2cif.cpp reading sources... [ 36%] api/function_namespacecif_1a0cf4d792e3cf8fb29aa18b8c585b1426 reading sources... [ 36%] api/function_namespacecif_1a0e173ffb184bab07d483866b6f2f7274 reading sources... [ 36%] api/function_namespacecif_1a0f6dd8dc18df398b116c0c2343c2cfee @@ -2414,6 +2438,8 @@ reading sources... [ 38%] api/function_namespacecif_1a15ce5665ae421c0a3db9fac68c149836 reading sources... [ 38%] api/function_namespacecif_1a17188febf04153361cad42eb042da64a reading sources... [ 38%] api/function_namespacecif_1a18461202bb0b0d4d134bc3eb46455776 +[ 40%] Building CXX object CMakeFiles/cifpp.dir/src/point.cpp.o +/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/point.cpp.o -MF CMakeFiles/cifpp.dir/src/point.cpp.o.d -o CMakeFiles/cifpp.dir/src/point.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/point.cpp reading sources... [ 39%] api/function_namespacecif_1a1bf743b12f5bba28eab81d100fa6be6f reading sources... [ 39%] api/function_namespacecif_1a1cb6fb0735b49d0e7796d223763718e4 reading sources... [ 39%] api/function_namespacecif_1a2190ac2315339dabb5be80f2a8634e29 @@ -2425,11 +2451,11 @@ reading sources... [ 41%] api/function_namespacecif_1a2a94aaedfb605f4e6a403e8790ee4cfd reading sources... [ 41%] api/function_namespacecif_1a2b6f06460cea1b44770b316c8c5d4b06 reading sources... [ 42%] api/function_namespacecif_1a2bce0a62772ef8e6c5128b36d4cbb9ce -[ 54%] Building CXX object CMakeFiles/cifpp.dir/src/pdb/pdb2cif_remark_3.cpp.o reading sources... [ 42%] api/function_namespacecif_1a2db5caf5ac5cd4376f29255fa9eebbc0 -/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/pdb/pdb2cif_remark_3.cpp.o -MF CMakeFiles/cifpp.dir/src/pdb/pdb2cif_remark_3.cpp.o.d -o CMakeFiles/cifpp.dir/src/pdb/pdb2cif_remark_3.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/pdb/pdb2cif_remark_3.cpp reading sources... [ 42%] api/function_namespacecif_1a2e9af2d268ca7932d3b5df430dfabfe7 reading sources... [ 42%] api/function_namespacecif_1a302fdd5a6fea6ea6a874f4e635bd43e3 +[ 43%] Building CXX object CMakeFiles/cifpp.dir/src/symmetry.cpp.o +/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/symmetry.cpp.o -MF CMakeFiles/cifpp.dir/src/symmetry.cpp.o.d -o CMakeFiles/cifpp.dir/src/symmetry.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/symmetry.cpp reading sources... [ 43%] api/function_namespacecif_1a31bf31f1feff330b402ab96d51b4f458 reading sources... [ 43%] api/function_namespacecif_1a337647d2ca82951e159b244e0a892f0e reading sources... [ 43%] api/function_namespacecif_1a39ae1da888a5c8a6ee7f1438b78b7734 @@ -2465,6 +2491,8 @@ reading sources... [ 52%] api/function_namespacecif_1a8c495f22c9ff90161b1ae539552e02aa reading sources... [ 53%] api/function_namespacecif_1a8c894208d05a89ca79ed66421d241f0f reading sources... [ 53%] api/function_namespacecif_1a8f9736ac0d35666ef1a68f02705b8507 +[ 45%] Building CXX object CMakeFiles/cifpp.dir/src/model.cpp.o +/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/model.cpp.o -MF CMakeFiles/cifpp.dir/src/model.cpp.o.d -o CMakeFiles/cifpp.dir/src/model.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/model.cpp reading sources... [ 53%] api/function_namespacecif_1a91dadafdbe6019e5215f9992dc67ca4c reading sources... [ 54%] api/function_namespacecif_1a94db0d39a3d82bde5ae35a2d5a729dce reading sources... [ 54%] api/function_namespacecif_1a96cecd643b7fedefcee808419ac8db73 @@ -2524,9 +2552,13 @@ reading sources... [ 70%] api/function_pdb_8hpp_1aa4bb7030a077b462d75b328a2d6ef70d reading sources... [ 70%] api/function_pdb_8hpp_1aa57fd6d1c296ee70c9784fc59382d7c1 reading sources... [ 71%] api/function_pdb_8hpp_1abb1c2c8e2e8be5293619bbb7cd8f316b +[ 47%] Building CXX object CMakeFiles/cifpp.dir/src/pdb/cif2pdb.cpp.o +/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/pdb/cif2pdb.cpp.o -MF CMakeFiles/cifpp.dir/src/pdb/cif2pdb.cpp.o.d -o CMakeFiles/cifpp.dir/src/pdb/cif2pdb.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/pdb/cif2pdb.cpp reading sources... [ 71%] api/function_pdb_8hpp_1ac681cb3a6237bc71dcba0e88fb1c0832 reading sources... [ 71%] api/function_symmetry_8hpp_1a5a53cac9d72c839c804fd7619f764d67 reading sources... [ 72%] api/library_root +[ 50%] Building CXX object CMakeFiles/cifpp.dir/src/pdb/pdb2cif.cpp.o +/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/pdb/pdb2cif.cpp.o -MF CMakeFiles/cifpp.dir/src/pdb/pdb2cif.cpp.o.d -o CMakeFiles/cifpp.dir/src/pdb/pdb2cif.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/pdb/pdb2cif.cpp reading sources... [ 72%] api/namespace_cif reading sources... [ 72%] api/namespace_cif__colour reading sources... [ 73%] api/namespace_cif__colour__detail @@ -2578,8 +2610,6 @@ reading sources... [ 86%] api/structcif_1_1item__handle reading sources... [ 87%] api/structcif_1_1item__validator reading sources... [ 87%] api/structcif_1_1item__value -[ 56%] Building CXX object CMakeFiles/cifpp.dir/src/pdb/reconstruct.cpp.o -/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/pdb/reconstruct.cpp.o -MF CMakeFiles/cifpp.dir/src/pdb/reconstruct.cpp.o.d -o CMakeFiles/cifpp.dir/src/pdb/reconstruct.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/pdb/reconstruct.cpp reading sources... [ 87%] api/structcif_1_1key reading sources... [ 88%] api/structcif_1_1link__validator reading sources... [ 88%] api/structcif_1_1my__charconv @@ -2612,8 +2642,6 @@ reading sources... [ 96%] api/variable_namespacecif_1a54a676462364096110c8178e02693802 reading sources... [ 96%] api/variable_namespacecif_1a6dacacf91cee6e2c246a2334f0fbd607 reading sources... [ 97%] api/variable_namespacecif_1a9347107ebb4ef72dca122c3285453c4f -[ 59%] Building CXX object CMakeFiles/cifpp.dir/src/pdb/validate-pdbx.cpp.o -/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/pdb/validate-pdbx.cpp.o -MF CMakeFiles/cifpp.dir/src/pdb/validate-pdbx.cpp.o.d -o CMakeFiles/cifpp.dir/src/pdb/validate-pdbx.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/pdb/validate-pdbx.cpp reading sources... [ 97%] api/variable_namespacecif_1a9ebb6f223c638daee2bc1bf285be72c8 reading sources... [ 97%] api/variable_namespacecif_1ac0cd49271cfb2fd68933871ab34217d6 reading sources... [ 98%] api/variable_namespacecif_1aee0d4f8adeaf464b4201156efbb97f73 @@ -2813,25 +2841,6 @@ writing output... [ 33%] api/function_condition_8hpp_1ae3fb5e492867225091edeba773f91d39 writing output... [ 33%] api/function_model_8hpp_1a9bb5822efb054c2979a666d9bfc0913d writing output... [ 33%] api/function_model_8hpp_1aa8d7a4613d7166fe2e43c36894cbd1e7 -In file included from /usr/include/c++/14/string:42, - from /usr/include/c++/14/stdexcept:39, - from /usr/include/c++/14/system_error:43, - from /usr/include/c++/14/bits/fs_fwd.h:35, - from /usr/include/c++/14/filesystem:51, - from /build/reproducible-path/libcifpp-7.0.7/include/cif++/utilities.hpp:31, - from /build/reproducible-path/libcifpp-7.0.7/include/cif++.hpp:29, - from /build/reproducible-path/libcifpp-7.0.7/src/pdb/reconstruct.cpp:27: -In static member function ‘static constexpr void std::char_traits::assign(char_type&, const char_type&)’, - inlined from ‘constexpr void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::push_back(_CharT) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’ at /usr/include/c++/14/bits/basic_string.h:1577:21, - inlined from ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator+=(_CharT) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’ at /usr/include/c++/14/bits/basic_string.h:1399:17, - inlined from ‘void cif::pdb::createEntityPoly(cif::datablock&)’ at /build/reproducible-path/libcifpp-7.0.7/src/pdb/reconstruct.cpp:845:29: -/usr/include/c++/14/bits/char_traits.h:350:14: warning: ‘letter_can’ may be used uninitialized [-Wmaybe-uninitialized] - 350 | __c1 = __c2; - | ~~~~~^~~~~~ -/build/reproducible-path/libcifpp-7.0.7/src/pdb/reconstruct.cpp: In function ‘void cif::pdb::createEntityPoly(cif::datablock&)’: -/build/reproducible-path/libcifpp-7.0.7/src/pdb/reconstruct.cpp:780:30: note: ‘letter_can’ was declared here - 780 | char letter_can; - | ^~~~~~~~~~ writing output... [ 34%] api/function_model_8hpp_1aaaea875b497445410924763ba322f0f4 writing output... [ 34%] api/function_model_8hpp_1ab82fb33002132ca78f0f0de0855a9883 writing output... [ 34%] api/function_namespacecif_1a016b23e15d2a1d5f8121a697d7bec68e @@ -2869,6 +2878,8 @@ writing output... [ 44%] api/function_namespacecif_1a3fa150213a7a95d9d013b5faeae2d5f2 writing output... [ 44%] api/function_namespacecif_1a444f4493c315230d1137f13d0e28920c writing output... [ 45%] api/function_namespacecif_1a449c5d43d72a9779d3338c2882d13e36 +[ 52%] Building CXX object CMakeFiles/cifpp.dir/src/pdb/pdb2cif_remark_3.cpp.o +/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/pdb/pdb2cif_remark_3.cpp.o -MF CMakeFiles/cifpp.dir/src/pdb/pdb2cif_remark_3.cpp.o.d -o CMakeFiles/cifpp.dir/src/pdb/pdb2cif_remark_3.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/pdb/pdb2cif_remark_3.cpp writing output... [ 45%] api/function_namespacecif_1a470ad3905a4aa5fe52da998640740ab7 writing output... [ 45%] api/function_namespacecif_1a490147eab255051c58bc3d7d16471e17 writing output... [ 45%] api/function_namespacecif_1a4c27e27d4cb70a2e13cf2efb05ccd325 @@ -2959,6 +2970,8 @@ writing output... [ 71%] api/function_pdb_8hpp_1ac681cb3a6237bc71dcba0e88fb1c0832 writing output... [ 71%] api/function_symmetry_8hpp_1a5a53cac9d72c839c804fd7619f764d67 writing output... [ 72%] api/library_root +[ 54%] Building CXX object CMakeFiles/cifpp.dir/src/pdb/reconstruct.cpp.o +/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/pdb/reconstruct.cpp.o -MF CMakeFiles/cifpp.dir/src/pdb/reconstruct.cpp.o.d -o CMakeFiles/cifpp.dir/src/pdb/reconstruct.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/pdb/reconstruct.cpp writing output... [ 72%] api/namespace_cif writing output... [ 72%] api/namespace_cif__colour writing output... [ 73%] api/namespace_cif__colour__detail @@ -3072,11 +3085,32 @@ build succeeded, 40 warnings. The HTML pages are in sphinx. +[ 56%] Building CXX object CMakeFiles/cifpp.dir/src/pdb/validate-pdbx.cpp.o +/usr/bin/c++ -DBOOST_REGEX_STANDALONE=1 -DCACHE_DIR=\"/var/cache/libcifpp\" -DDATA_DIR=\"/usr/share/libcifpp\" -DUSE_BOOST_REGEX=1 -Dcifpp_EXPORTS -I/build/reproducible-path/libcifpp-7.0.7/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -fPIC -MD -MT CMakeFiles/cifpp.dir/src/pdb/validate-pdbx.cpp.o -MF CMakeFiles/cifpp.dir/src/pdb/validate-pdbx.cpp.o.d -o CMakeFiles/cifpp.dir/src/pdb/validate-pdbx.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/src/pdb/validate-pdbx.cpp +make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu' +[ 59%] Built target Sphinx-libcifpp +In file included from /usr/include/c++/14/string:42, + from /usr/include/c++/14/stdexcept:39, + from /usr/include/c++/14/system_error:43, + from /usr/include/c++/14/bits/fs_fwd.h:35, + from /usr/include/c++/14/filesystem:51, + from /build/reproducible-path/libcifpp-7.0.7/include/cif++/utilities.hpp:31, + from /build/reproducible-path/libcifpp-7.0.7/include/cif++.hpp:29, + from /build/reproducible-path/libcifpp-7.0.7/src/pdb/reconstruct.cpp:27: +In static member function ‘static constexpr void std::char_traits::assign(char_type&, const char_type&)’, + inlined from ‘constexpr void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::push_back(_CharT) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’ at /usr/include/c++/14/bits/basic_string.h:1577:21, + inlined from ‘constexpr std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator+=(_CharT) [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator]’ at /usr/include/c++/14/bits/basic_string.h:1399:17, + inlined from ‘void cif::pdb::createEntityPoly(cif::datablock&)’ at /build/reproducible-path/libcifpp-7.0.7/src/pdb/reconstruct.cpp:845:29: +/usr/include/c++/14/bits/char_traits.h:350:14: warning: ‘letter_can’ may be used uninitialized [-Wmaybe-uninitialized] + 350 | __c1 = __c2; + | ~~~~~^~~~~~ +/build/reproducible-path/libcifpp-7.0.7/src/pdb/reconstruct.cpp: In function ‘void cif::pdb::createEntityPoly(cif::datablock&)’: +/build/reproducible-path/libcifpp-7.0.7/src/pdb/reconstruct.cpp:780:30: note: ‘letter_can’ was declared here + 780 | char letter_can; + | ^~~~~~~~~~ [ 61%] Linking CXX shared library libcifpp.so /usr/bin/cmake -E cmake_link_script CMakeFiles/cifpp.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libcifpp.so.7.0 -o libcifpp.so.7.0.7 CMakeFiles/cifpp.dir/src/category.cpp.o CMakeFiles/cifpp.dir/src/condition.cpp.o CMakeFiles/cifpp.dir/src/datablock.cpp.o CMakeFiles/cifpp.dir/src/dictionary_parser.cpp.o CMakeFiles/cifpp.dir/src/file.cpp.o CMakeFiles/cifpp.dir/src/item.cpp.o CMakeFiles/cifpp.dir/src/parser.cpp.o CMakeFiles/cifpp.dir/src/row.cpp.o CMakeFiles/cifpp.dir/src/validate.cpp.o CMakeFiles/cifpp.dir/src/text.cpp.o CMakeFiles/cifpp.dir/src/utilities.cpp.o CMakeFiles/cifpp.dir/src/atom_type.cpp.o CMakeFiles/cifpp.dir/src/compound.cpp.o CMakeFiles/cifpp.dir/src/point.cpp.o CMakeFiles/cifpp.dir/src/symmetry.cpp.o CMakeFiles/cifpp.dir/src/model.cpp.o CMakeFiles/cifpp.dir/src/pdb/cif2pdb.cpp.o CMakeFiles/cifpp.dir/src/pdb/pdb2cif.cpp.o CMakeFiles/cifpp.dir/src/pdb/pdb2cif_remark_3.cpp.o CMakeFiles/cifpp.dir/src/pdb/reconstruct.cpp.o "CMakeFiles/cifpp.dir/src/pdb/validate-pdbx.cpp.o" /usr/lib/i386-linux-gnu/libz.so -make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu' -[ 61%] Built target Sphinx-libcifpp /usr/bin/cmake -E cmake_symlink_library libcifpp.so.7.0.7 libcifpp.so.7.0 libcifpp.so make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu' [ 61%] Built target cifpp @@ -3091,94 +3125,94 @@ make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu' [ 63%] Built target test-main make -f test/CMakeFiles/unit-v2-test.dir/build.make test/CMakeFiles/unit-v2-test.dir/depend +make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu' make -f test/CMakeFiles/unit-3d-test.dir/build.make test/CMakeFiles/unit-3d-test.dir/depend make -f test/CMakeFiles/format-test.dir/build.make test/CMakeFiles/format-test.dir/depend -make -f test/CMakeFiles/model-test.dir/build.make test/CMakeFiles/model-test.dir/depend -make -f test/CMakeFiles/rename-compound-test.dir/build.make 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CMakeFiles/rename-compound-test.dir/rename-compound-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/test/rename-compound-test.cpp -[ 75%] Building CXX object test/CMakeFiles/unit-3d-test.dir/unit-3d-test.cpp.o -cd /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.7/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/unit-3d-test.dir/unit-3d-test.cpp.o -MF CMakeFiles/unit-3d-test.dir/unit-3d-test.cpp.o.d -o CMakeFiles/unit-3d-test.dir/unit-3d-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/test/unit-3d-test.cpp -[ 77%] Building CXX object test/CMakeFiles/sugar-test.dir/sugar-test.cpp.o -cd /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.7/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/sugar-test.dir/sugar-test.cpp.o -MF CMakeFiles/sugar-test.dir/sugar-test.cpp.o.d -o CMakeFiles/sugar-test.dir/sugar-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/test/sugar-test.cpp -[ 79%] Linking CXX executable format-test +[ 77%] Linking CXX executable format-test cd /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/format-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now "CMakeFiles/format-test.dir/format-test.cpp.o" "CMakeFiles/test-main.dir/test-main.cpp.o" -o format-test -Wl,-rpath,/build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu ../libcifpp.so.7.0.7 /usr/lib/libCatch2.a /usr/lib/i386-linux-gnu/libz.so +make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu' +[ 77%] Built target format-test +make -f test/CMakeFiles/sugar-test.dir/build.make test/CMakeFiles/sugar-test.dir/depend +make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu' +cd /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.7 /build/reproducible-path/libcifpp-7.0.7/test /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu/test /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu/test/CMakeFiles/sugar-test.dir/DependInfo.cmake "--color=" +make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu' +make -f test/CMakeFiles/sugar-test.dir/build.make test/CMakeFiles/sugar-test.dir/build +make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu' +[ 79%] Building CXX object test/CMakeFiles/sugar-test.dir/sugar-test.cpp.o +cd /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.7/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/sugar-test.dir/sugar-test.cpp.o -MF CMakeFiles/sugar-test.dir/sugar-test.cpp.o.d -o CMakeFiles/sugar-test.dir/sugar-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/test/sugar-test.cpp [ 81%] Linking CXX executable rename-compound-test cd /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/rename-compound-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now "CMakeFiles/rename-compound-test.dir/rename-compound-test.cpp.o" "CMakeFiles/test-main.dir/test-main.cpp.o" -o rename-compound-test -Wl,-rpath,/build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu ../libcifpp.so.7.0.7 /usr/lib/libCatch2.a /usr/lib/i386-linux-gnu/libz.so -[ 84%] Linking CXX executable sugar-test -cd /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/sugar-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now "CMakeFiles/sugar-test.dir/sugar-test.cpp.o" "CMakeFiles/test-main.dir/test-main.cpp.o" -o sugar-test -Wl,-rpath,/build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu ../libcifpp.so.7.0.7 /usr/lib/libCatch2.a /usr/lib/i386-linux-gnu/libz.so -make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu' -[ 84%] Built target rename-compound-test +[ 81%] Built target rename-compound-test make -f test/CMakeFiles/spinner-test.dir/build.make test/CMakeFiles/spinner-test.dir/depend -[ 84%] Built target format-test -make -f test/CMakeFiles/validate-pdbx-test.dir/build.make test/CMakeFiles/validate-pdbx-test.dir/depend make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu' cd /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.7 /build/reproducible-path/libcifpp-7.0.7/test /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu/test /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu/test/CMakeFiles/spinner-test.dir/DependInfo.cmake "--color=" +make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu' +make -f test/CMakeFiles/spinner-test.dir/build.make test/CMakeFiles/spinner-test.dir/build make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu' -cd /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.7 /build/reproducible-path/libcifpp-7.0.7/test /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu/test /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu/test/CMakeFiles/validate-pdbx-test.dir/DependInfo.cmake "--color=" +[ 84%] Building CXX object test/CMakeFiles/spinner-test.dir/spinner-test.cpp.o +cd /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.7/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/spinner-test.dir/spinner-test.cpp.o -MF CMakeFiles/spinner-test.dir/spinner-test.cpp.o.d -o CMakeFiles/spinner-test.dir/spinner-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/test/spinner-test.cpp +[ 86%] Linking CXX executable spinner-test +cd /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/spinner-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now "CMakeFiles/spinner-test.dir/spinner-test.cpp.o" "CMakeFiles/test-main.dir/test-main.cpp.o" -o spinner-test -Wl,-rpath,/build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu ../libcifpp.so.7.0.7 /usr/lib/libCatch2.a /usr/lib/i386-linux-gnu/libz.so +[ 88%] Linking CXX executable sugar-test +cd /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/sugar-test.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now "CMakeFiles/sugar-test.dir/sugar-test.cpp.o" "CMakeFiles/test-main.dir/test-main.cpp.o" -o sugar-test -Wl,-rpath,/build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu ../libcifpp.so.7.0.7 /usr/lib/libCatch2.a /usr/lib/i386-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu' -make -f test/CMakeFiles/validate-pdbx-test.dir/build.make test/CMakeFiles/validate-pdbx-test.dir/build +[ 88%] Built target spinner-test +make -f test/CMakeFiles/validate-pdbx-test.dir/build.make test/CMakeFiles/validate-pdbx-test.dir/depend make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu' +cd /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libcifpp-7.0.7 /build/reproducible-path/libcifpp-7.0.7/test /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu/test /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu/test/CMakeFiles/validate-pdbx-test.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu' -make -f test/CMakeFiles/spinner-test.dir/build.make test/CMakeFiles/spinner-test.dir/build +make -f test/CMakeFiles/validate-pdbx-test.dir/build.make test/CMakeFiles/validate-pdbx-test.dir/build make[4]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu' -[ 86%] Building CXX object test/CMakeFiles/validate-pdbx-test.dir/validate-pdbx-test.cpp.o +[ 90%] Building CXX object test/CMakeFiles/validate-pdbx-test.dir/validate-pdbx-test.cpp.o cd /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.7/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/validate-pdbx-test.dir/validate-pdbx-test.cpp.o -MF CMakeFiles/validate-pdbx-test.dir/validate-pdbx-test.cpp.o.d -o CMakeFiles/validate-pdbx-test.dir/validate-pdbx-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/test/validate-pdbx-test.cpp make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu' -[ 88%] Building CXX object test/CMakeFiles/spinner-test.dir/spinner-test.cpp.o -cd /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu/test && /usr/bin/c++ -DCACHE_DIR=\"/var/cache/libcifpp\" -DCATCH22=0 -DDATA_DIR=\"/usr/share/libcifpp\" -I/usr/include/eigen3 -I/build/reproducible-path/libcifpp-7.0.7/include -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -std=gnu++20 -MD -MT test/CMakeFiles/spinner-test.dir/spinner-test.cpp.o -MF CMakeFiles/spinner-test.dir/spinner-test.cpp.o.d -o CMakeFiles/spinner-test.dir/spinner-test.cpp.o -c /build/reproducible-path/libcifpp-7.0.7/test/spinner-test.cpp -[ 88%] Built target sugar-test -[ 90%] Linking CXX executable model-test +[ 90%] Built target sugar-test +[ 93%] Linking CXX executable model-test cd /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/model-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now "CMakeFiles/model-test.dir/model-test.cpp.o" "CMakeFiles/test-main.dir/test-main.cpp.o" -o model-test -Wl,-rpath,/build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu ../libcifpp.so.7.0.7 /usr/lib/libCatch2.a /usr/lib/i386-linux-gnu/libz.so make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu' -[ 90%] Built target model-test -[ 93%] Linking CXX executable spinner-test -cd /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/spinner-test.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now "CMakeFiles/spinner-test.dir/spinner-test.cpp.o" "CMakeFiles/test-main.dir/test-main.cpp.o" -o spinner-test -Wl,-rpath,/build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu ../libcifpp.so.7.0.7 /usr/lib/libCatch2.a /usr/lib/i386-linux-gnu/libz.so -make[4]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu' -[ 93%] Built target spinner-test +[ 93%] Built target model-test [ 95%] Linking CXX executable validate-pdbx-test cd /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/validate-pdbx-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libcifpp-7.0.7=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wl,-z,relro -Wl,-z,now "CMakeFiles/validate-pdbx-test.dir/validate-pdbx-test.cpp.o" "CMakeFiles/test-main.dir/test-main.cpp.o" -o validate-pdbx-test -Wl,-rpath,/build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu ../libcifpp.so.7.0.7 /usr/lib/libCatch2.a /usr/lib/i386-linux-gnu/libz.so @@ -3199,10 +3233,10 @@ make[2]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu' make[1]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7' dh_auto_test - cd obj-i686-linux-gnu && make -j6 test ARGS\+=--verbose ARGS\+=-j6 + cd obj-i686-linux-gnu && make -j5 test ARGS\+=--verbose ARGS\+=-j5 make[1]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu' Running tests... -/usr/bin/ctest --force-new-ctest-process --verbose -j6 +/usr/bin/ctest --force-new-ctest-process --verbose -j5 UpdateCTestConfiguration from :/build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu/DartConfiguration.tcl Parse Config file:/build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu/DartConfiguration.tcl @@ -3244,13 +3278,7 @@ 5: Test command: /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu/test/rename-compound-test "--data-dir" "/build/reproducible-path/libcifpp-7.0.7/test" 5: Working Directory: /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu/test 5: Test timeout computed to be: 1500 -test 6 - Start 6: sugar-test - -6: Test command: /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu/test/sugar-test "--data-dir" "/build/reproducible-path/libcifpp-7.0.7/test" -6: Working Directory: /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu/test -6: Test timeout computed to be: 1500 -3: Randomness seeded to: 1902260021 +3: Randomness seeded to: 737390282 3: Hello, world! 3: Hello, world! 3: Hello, world! @@ -3262,26 +3290,26 @@ 3: All tests passed (2 assertions in 2 test cases) 3: 1/8 Test #3: format-test ...................... Passed 0.01 sec -test 7 - Start 7: spinner-test +test 6 + Start 6: sugar-test -7: Test command: /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu/test/spinner-test "--data-dir" "/build/reproducible-path/libcifpp-7.0.7/test" -7: Working Directory: /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu/test -7: Test timeout computed to be: 1500 -5: Randomness seeded to: 337974413 -5: inconsistent mandatory value for _diffrn_refln.standard_code in dictionary -5: choosing N -1: Randomness seeded to: 715865752 +6: Test command: /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu/test/sugar-test "--data-dir" "/build/reproducible-path/libcifpp-7.0.7/test" +6: Working Directory: /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu/test +6: Test timeout computed to be: 1500 +1: Randomness seeded to: 47769331 1: warning: no child to parent links were found for child cat_1 and parent cat_3 1: Error parsing mmCIF: This file does not seem to be an mmCIF file +5: Randomness seeded to: 2383487664 +5: inconsistent mandatory value for _diffrn_refln.standard_code in dictionary +5: choosing N 5: inconsistent mandatory value for _diffrn_refln.frame_id in dictionary 5: choosing N -4: Randomness seeded to: 2096915857 +4: Randomness seeded to: 4237971402 +4: Warning: no atoms loaded 4: Warning: no atoms loaded 5: Creating component index ... done 5: Loading component RXA... done 5: Will not rename in child category since there are already rows that link to the parent -4: Warning: no atoms loaded 5: data_1CBS 5: # 5: _entry.id 1CBS @@ -5598,6 +5626,25 @@ 5: _pdbx_struct_sheet_hbond.range_2_auth_seq_id 5: A 1 2 O PHE A 65 ? O PHE A 65 N PHE A 50 ? N PHE A 50 5: A 2 3 N SER A 55 ? N SER A 55 O ALA A 40 ? O ALA A 40 +5: A 3 4 N ILE A 43 ? N ILE A 43 O GLY A 5 ? O GLY A 5 +5: A 4 5 N GLU A 13 ? N GLU A 13 O THR A 131 ? O THR A 131 +5: A 5 6 N TYR A 134 ? N TYR A 134 O LEU A 119 ? O LEU A 119 +5: A 6 7 N THR A 124 ? N THR A 124 O SER A 108 ? O SER A 108 +5: A 7 8 O ARG A 111 ? O ARG A 111 N MET A 93 ? N MET A 93 +5: A 8 9 O LYS A 98 ? O LYS A 98 N LYS A 82 ? N LYS A 82 +5: A 9 10 N SER A 83 ? N SER A 83 O PHE A 71 ? O PHE A 71 +5: # +5: Skipping validation of empty category pdbx_branch_scheme +4: =============================================================================== +4: All tests passed (8500 assertions in 6 test cases) +4: +2/8 Test #4: model-test ....................... Passed 0.59 sec +test 7 + Start 7: spinner-test + +7: Test command: /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu/test/spinner-test "--data-dir" "/build/reproducible-path/libcifpp-7.0.7/test" +7: Working Directory: /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu/test +7: Test timeout computed to be: 1500 1: Adding mandatory item conn_type_id to category struct_conn 1: Adding mandatory item ptnr1_label_asym_id to category struct_conn 1: Adding mandatory item ptnr1_label_comp_id to category struct_conn @@ -5640,15 +5687,6 @@ 1: The following named resources were loaded: 1: components.cif -> "/build/reproducible-path/libcifpp-7.0.7/test/../rsrc/ccd-subset.cif" 1: mmcif_pdbx.dic -> "/build/reproducible-path/libcifpp-7.0.7/test/../rsrc/mmcif_pdbx.dic" -5: A 3 4 N ILE A 43 ? N ILE A 43 O GLY A 5 ? O GLY A 5 -5: A 4 5 N GLU A 13 ? N GLU A 13 O THR A 131 ? O THR A 131 -5: A 5 6 N TYR A 134 ? N TYR A 134 O LEU A 119 ? O LEU A 119 -5: A 6 7 N THR A 124 ? N THR A 124 O SER A 108 ? O SER A 108 -5: A 7 8 O ARG A 111 ? O ARG A 111 N MET A 93 ? N MET A 93 -5: A 8 9 O LYS A 98 ? O LYS A 98 N LYS A 82 ? N LYS A 82 -5: A 9 10 N SER A 83 ? N SER A 83 O PHE A 71 ? O PHE A 71 -5: # -5: Skipping validation of empty category pdbx_branch_scheme 5: data_1CBS 5: # 5: _entry.id 1CBS @@ -7982,18 +8020,19 @@ 5: test cases: 1 | 1 passed 5: assertions: - none - 5: -2/8 Test #5: rename-compound-test ............. Passed 0.38 sec +3/8 Test #5: rename-compound-test ............. Passed 0.63 sec test 8 Start 8: validate-pdbx-test 8: Test command: /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu/test/validate-pdbx-test "--data-dir" "/build/reproducible-path/libcifpp-7.0.7/test" 8: Working Directory: /build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu/test 8: Test timeout computed to be: 1500 -4: =============================================================================== -4: All tests passed (8500 assertions in 6 test cases) -4: -3/8 Test #4: model-test ....................... Passed 0.39 sec 1: Choosing X-PLOR version '' as refinement program. Score = 1 +8: Randomness seeded to: 2749946876 +8: =============================================================================== +8: All tests passed (15 assertions in 1 test case) +8: +4/8 Test #8: validate-pdbx-test ............... Passed 0.14 sec 1: Adding mandatory item value to category pdbx_struct_assembly_prop 1: Adding mandatory item conn_type_id to category struct_conn 1: Adding mandatory item ptnr1_label_asym_id to category struct_conn @@ -8003,38 +8042,33 @@ 1: Adding mandatory item ptnr2_label_comp_id to category struct_conn 1: Adding mandatory item ptnr2_label_seq_id to category struct_conn 1: The asym ID's of ndb_poly_seq_scheme and pdbx_poly_seq_scheme are not equal, dropping ndb_poly_seq_scheme -8: Randomness seeded to: 1331712960 -8: =============================================================================== -8: All tests passed (15 assertions in 1 test case) -8: -4/8 Test #8: validate-pdbx-test ............... Passed 0.18 sec 1: =============================================================================== 1: All tests passed (100465 assertions in 51 test cases) 1: -5/8 Test #1: unit-v2-test ..................... Passed 0.59 sec -6: Randomness seeded to: 4183956953 +5/8 Test #1: unit-v2-test ..................... Passed 0.85 sec +6: Randomness seeded to: 2164241323 6: =============================================================================== 6: All tests passed (10 assertions in 2 test cases) 6: -6/8 Test #6: sugar-test ....................... Passed 3.11 sec -2: Randomness seeded to: 795344847 +6/8 Test #6: sugar-test ....................... Passed 2.63 sec +2: Randomness seeded to: 3355240251 2: (1.70711,1.70711,0) 2: =============================================================================== 2: All tests passed (5099624 assertions in 15 test cases) 2: -7/8 Test #2: unit-3d-test ..................... Passed 3.15 sec -7: Randomness seeded to: 2125935609 +7/8 Test #2: unit-3d-test ..................... Passed 2.72 sec +7: Randomness seeded to: 750610420 7: =============================================================================== 7: test cases: 3 | 3 passed 7: assertions: - none - 7: -8/8 Test #7: spinner-test ..................... Passed 5.70 sec +8/8 Test #7: spinner-test ..................... Passed 6.53 sec 100% tests passed, 0 tests failed out of 8 -Total Test time (real) = 5.72 sec +Total Test time (real) = 7.24 sec make[1]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu' - rm -fr -- /tmp/dh-xdg-rundir-OxYJI33t + rm -fr -- /tmp/dh-xdg-rundir-sq4EdlFk create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/libcifpp-dev.substvars debian/libcifpp-doc.substvars debian/libcifpp7.substvars debian/libcifpp-data.substvars @@ -8043,7 +8077,7 @@ install -m0755 -d debian/libcifpp-data/etc/libcifpp/cache-update.d dh_auto_install install -m0755 -d /build/reproducible-path/libcifpp-7.0.7/debian/tmp - cd obj-i686-linux-gnu && make -j6 install DESTDIR=/build/reproducible-path/libcifpp-7.0.7/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-i686-linux-gnu && make -j5 install DESTDIR=/build/reproducible-path/libcifpp-7.0.7/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/libcifpp-7.0.7 -B/build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -8096,711 +8130,711 @@ A configuration file has been written to /etc/libcifpp.conf, please edit this file to enable automatic updates -- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/etc/libcifpp/cache-update.d -- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/basics.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/searchindex.js --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/js --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/js/versions.js --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/js/theme.js --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/pygments.css --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/documentation_options.js --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/fonts --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/fonts/RobotoSlab-Bold.woff2 --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/fonts/Lato-BoldItalic.ttf --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/fonts/fontawesome-webfont.ttf --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/fonts/Lato-Regular.woff2 --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/fonts/Lato-Bold.ttf --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/fonts/fontawesome-webfont.svg --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/fonts/Lato-Italic.ttf --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/fonts/Lato-Regular.ttf --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/fonts/Lato-BoldItalic.woff2 --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/fonts/fontawesome-webfont.eot --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/fonts/RobotoSlab-Regular.woff2 --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/fonts/Lato-Italic.woff2 --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/fonts/fontawesome-webfont.woff2 --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/fonts/fontawesome-webfont.woff --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/fonts/Lato-Bold.woff2 --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/file.png --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/searchtools.js --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/css --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/css/theme.css --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/css/badge_only.css --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/language_data.js --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/basic.css --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/plus.png --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/doctools.js --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/sphinx_highlight.js --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/jquery.js --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/minus.png --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/_sphinx_javascript_frameworks_compat.js --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/resources.html --- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/index.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/symmetry.html -- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/model.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1mm_1_1structure.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/enum_namespacecif_1a22f8e0bb538e176ebddfe89c7ef03a6d.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/namespace_cif__gzio.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1matrix__matrix__multiplication.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/typedef_namespacecif_1a74bfe90596358d194adfab0eb0054b79.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_pdb_pdb2cif.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1multiple__results__error.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_iterator.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_parser.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a8c224d1a874aab66b434422f03ed85d4.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1acde0f42396a36ed1d56f59e8754968b9.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/define_exports_8hpp_1a42700069adcc34faeda32076bd173dc1.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/typedef_namespacecif_1aaca06426423d3d411d330b53965e1b2d.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1validation__category__impl.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/enum_namespacecif_1a636b6271c6af17a0d73dbe4557061c03.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1space__group.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1point__type.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a28d3d6db55465d265cb5b6a7a7d93a6b.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_pdb_8hpp_1aa57fd6d1c296ee70c9784fc59382d7c1.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_symmetry.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1ad8a62060b4918e8fcdba571adcde4295.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a0cf4d792e3cf8fb29aa18b8c585b1426.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/define_utilities_8hpp_1abd165ee6474b5b75bf075842fff13a04.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1mm_1_1atom.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a17188febf04153361cad42eb042da64a.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a337647d2ca82951e159b244e0a892f0e.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1key.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_pdb_cif2pdb.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1afdee9d0ba328b6dc1219e83b128b003b.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1duplicate__key__error.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1category_1_1item__entry.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1abce4bb85397326d1c0a079f43048fa18.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1ab9c1b63f260c9ccc3740971d6ca755c7.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/namespace_cif__colour__detail.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a9dbdac69f3a21d391ece6cc214da3075.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1compound__atom.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1empty__type.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_pdb_8hpp_1aa1addf5082e01849dc7b0af93aa0d34d.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a444f4493c315230d1137f13d0e28920c.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/enum_utilities_8hpp_1a8fd997c36131df71885f44abf2297523.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1acc9c4c9512361698933ffd748de9840d.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_dictionary_parser.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a0987fe676d4bf9554de808bfe9b13a6b.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1transformation.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_item.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/variable_namespacecif_1a335e9db77e4d400afe98317a0da325f9.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1compound__factory.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/typedef_namespacecif_1a8dcfa853b7f2c8b6dcc921d0c646ab46.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_exports.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_utilities.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1aa629e0bd1ddd07f3ffd7bde1bf0bf0fb.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a8864838e9763e207066cdbb217920f21.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1link__validator.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1iless.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1ab80f7d084a897f8654fecdcbe4c598ba.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1ad6daf4b6c782edbfeb0236e71f9e6ae1.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/define_exports_8hpp_1aab9ff10a498bf7bb72ce703e00c6551c.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/typedef_namespacecif_1a35974aa02359ef095b68335a05849c53.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1gzio_1_1basic__ostream.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a2db5caf5ac5cd4376f29255fa9eebbc0.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/variable_namespacecif_1a54a676462364096110c8178e02693802.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1gzio_1_1basic__streambuf.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/enum_namespacecif_1ae5e65dddeeceb84cd55b772eaca216c7.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a5c256bdffd9190e69c087e64b69d786d.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1acb24b83a370551b91948baf851bc3ba4.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/typedef_gzio_8hpp_1a584b8865c9038c4eeba40de7d4a9f1aa.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_pdb_8hpp_1aa4bb7030a077b462d75b328a2d6ef70d.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_model_8hpp_1aaaea875b497445410924763ba322f0f4.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_symmetry_8hpp_1a5a53cac9d72c839c804fd7619f764d67.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a10ff1c475902516ebcd1cf4059ac513b.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_pdb_io.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a4c27e27d4cb70a2e13cf2efb05ccd325.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1ad3654e07e2f3102ac503499fa51d930f.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1datablock.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a5a94d01c3d87fb157ae322b347129e56.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1ac0219abe114a15fecf35b9305c6a51b9.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a674345a2d0fb9af13bea9c833076cec0.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a86caa43dc2def46857ab3eb037b63f2b.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_pdb_8hpp_1a5f015134e46f13c6ef9eb9ed84b66d1a.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/page_deprecated.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1progress__bar.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/variable_namespacecif_1aee0d4f8adeaf464b4201156efbb97f73.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1missing__key__error.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1gzio_1_1basic__ofstream.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/typedef_namespacecif_1ae5965db5577f7f70118a5d976232d966.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/enum_model_8hpp_1a6085af7e2c3294d3d5520e387757e8dd.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1my__charconv.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1validator.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1gzio_1_1basic__ifstream.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1symop__data.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1gzio_1_1basic__istream.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a52c1d908e7a659686a16cbde3684f7a1.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/enum_namespacecif_1a9579bd6dc036aa07dcb73e9724cd4f54.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1crystal.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_model.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1ae8f1330ded658c851bda5859f2e071bc.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/define_exports_8hpp_1a34c1ecdfe0e74030d387cc4e3db0f20d.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1af443771f125de0bdc78726a4235fc1a3.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a302fdd5a6fea6ea6a874f4e635bd43e3.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_matrix.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a2996a300e6f91f05abb11706b3c3cef2.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/variable_namespacecif_1a4d1e6f19e4404091efa6d14e14654e63.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a867dc9c21324a3e65a931bb4d7160a9e.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a9a46e6bb8184b5c4b2867e50d4bafd46.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1ae338b65793c18872e8bcdfe6a534c83b.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1mm_1_1polymer.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a561da00d019d125f7356b8717771b6b6.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a89a5f58c129d13c01bd68e91d4a0c7a1.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/variable_gzio_8hpp_1a1cc3c9e961807f24cc997b0fdfbe76a6.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1condition.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/typedef_namespacecif_1a88b677fc53a3f1e8e0f15cdb6dc52cb7.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1file.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1fill__out__streambuf.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_pdb_8hpp_1a965679d61a80ce38487bb63eb1759281.html +-- Installing: 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/build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/enum_namespacecif_1aeffd144259eee54425fd70df1a4c119a.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_text.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/variable_namespacecif_1a1c875e7bda01246ff90860b7228b89b9.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_pdb_8hpp_1ac681cb3a6237bc71dcba0e88fb1c0832.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/typedef_namespacecif_1ab059fcaf3572f71d81e93484789bc0e0.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a490147eab255051c58bc3d7d16471e17.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1ae025ebbaf906da6b0e66d3fa6657c536.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1cell.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_pdb_8hpp_1a6eb3f608312210636d8d4bd3fd69745a.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/namespace_cif__mm.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1aa0722da1df2e70c4c68cb1e512978cae.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1item.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1matrix__subtraction.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_exports.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a2190ac2315339dabb5be80f2a8634e29.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/namespace_cif__colour.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/variable_namespacecif_1a6dacacf91cee6e2c246a2334f0fbd607.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a1020ee51b50043210b5e9c8eaecd4c28.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1matrix__expression.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a96cecd643b7fedefcee808419ac8db73.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_format.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a0e173ffb184bab07d483866b6f2f7274.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_pdb_io.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1matrix__cofactors.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_condition.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a9ef12a84362871f9b37c36d526dcdc87.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/namespace_cif__pdb.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_pdb_8hpp_1a429736e305a06f11b86700d76f8b1ac3.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1ac3d9a984c107208b0abbabe5f9e05289.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1ad57ceedd9a74df6a781247532781c5fa.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1af6e09fd9a34540b7718e7f76a0029629.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a2a94aaedfb605f4e6a403e8790ee4cfd.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1iterator__impl_3_01Category_01_4.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1acc0e956a0d6382e85c6ecb631e2edd21.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1validation__exception.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/variable_namespacecif_1a9347107ebb4ef72dca122c3285453c4f.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/unabridged_orphan.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_iterator.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a65ac1856b4a8a6675e6a0f0d9b5edfaa.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/enum_namespacecif_1a701ee5c69b8bf4a14c0807d32581e87d.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1atom__type__info.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1row.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a277d04e4939dd9a5167dc90c21c00266.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1iterator__impl_3_01Category_00_01T_01_4.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_utilities.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1item__value.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_pdb_8hpp_1a0d8dcb296d80df362a6d47d62b9e01c9.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1ac4c468df4c799fd242842a86e523bc3e.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/enum_namespacecif_1abd4c1fac9978e10628b9317d386d9287.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a02741e5ba23265cacfda366089d13f00.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/enum_model_8hpp_1a04742ae1684db656d2534463f850eb37.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1category.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a8c495f22c9ff90161b1ae539552e02aa.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/define_utilities_8hpp_1ae2fe1725bb5e9823d089c46b9ed5266e.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_gzio.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a89f948a7392e875f87012ca961060cb3.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1spacegroup.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1sac__parser.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1item__alias.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a27048ca516d6ab9d61b330b3ae27b37f.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_datablock.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a75df878566a514b909141bad937280f4.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_category.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a07568e2424a8b9f3d87c0e7b506f01c8.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/define_exports_8hpp_1af93831e3c71f1f7a80712cd6b3812992.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1abbc95fb717f14cca92d73ff5ed83c685.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_pdb_8hpp_1a0cdfe208e415aa2b34e1277e5de112cb.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a2bce0a62772ef8e6c5128b36d4cbb9ce.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_parser.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1aeb2069c34c7d86acc4418d3740adf5d8.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1ae07f25a3d33d06b0128d157360949285.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a7b0b6dec945a1157aa9d455fd35494df.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a26cac7b3c044dff1bdcac52425e775f9.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1symmetric__matrix__fixed.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1conditional__iterator__proxy.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a3f5264d06e1b2326aadfae8b3b114414.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/typedef_namespacecif_1a5ae3b948c3296e47bf3ae734cfdca029.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1category__validator.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a1bf743b12f5bba28eab81d100fa6be6f.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1aa697ec53ac311721d137e96508fe6268.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1ac0f43cdcc8b1ba95aae5fa92f623993d.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1identity__matrix.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a18461202bb0b0d4d134bc3eb46455776.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_condition.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/enum_namespacecif_1a339253d4b856d267db110e2e55b6fa46.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a7555a1d6c76bc1cef206fab9a8d67fad.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1symop__datablock.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1validator__factory.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1ad0c5beb6c8ad7621c2ec415432b33c48.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1parse__error.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_pdb_8hpp_1a631597613cf60653370f704184d3b9d7.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/enum_utilities_8hpp_1a2dfb81ba6ea862bc2483f1fed3477dcf.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_validate.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_pdb_8hpp_1a3beb1e1704887c34c3ffcf62ba4c93a2.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_item.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_pdb_8hpp_1a8442a8beb3ec3862b1223091ba279b3f.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_validate.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a4da118af7b65801fd61c48356e67e4a1.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/dir_cif++_pdb.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a94db0d39a3d82bde5ae35a2d5a729dce.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1iterator__impl.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/dir_cif++.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_file.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1compound__source.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1ab91dfb39e9ee43942c5d384f161b97f3.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a2b6f06460cea1b44770b316c8c5d4b06.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a4c9bbe02598ccb179023f7d9ed18f4e9.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_format.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1row__initializer.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a39ae1da888a5c8a6ee7f1438b78b7734.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1aaede7d3ae547f8c18450a83b6bcc42e2.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_category.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_row.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1gzio_1_1basic__ogzip__streambuf.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a470ad3905a4aa5fe52da998640740ab7.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a016b23e15d2a1d5f8121a697d7bec68e.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_matrix.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/file_cif++_pdb_tls.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a1425b605f99bf04eeb638f55c0d91566.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1sym__op.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_pdb.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1compound.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1quaternion__type.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_condition_8hpp_1ae3fb5e492867225091edeba773f91d39.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a2e9af2d268ca7932d3b5df430dfabfe7.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/variable_namespacecif_1a2ac4506e2b83a34ec6cc15a024f9b677.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a91dadafdbe6019e5215f9992dc67ca4c.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/program_listing_file_cif++_pdb_cif2pdb.hpp.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a15ce5665ae421c0a3db9fac68c149836.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1symmetric__matrix.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a31bf31f1feff330b402ab96d51b4f458.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a8250f4461c4b297082270bc37e532b88.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a1cb6fb0735b49d0e7796d223763718e4.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1mm_1_1monomer.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a8f9736ac0d35666ef1a68f02705b8507.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1ab4b982e1dc64e54d408cf8a9a99a2851.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1matrix.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/namespace_cif__detail.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_pdb_8hpp_1abb1c2c8e2e8be5293619bbb7cd8f316b.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/typedef_gzio_8hpp_1a41d20db90846830c07aa1b4052e4d61f.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/enum_namespacecif_1a6e1d07f3689961d3ec0d1e7cbfeefc6f.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/namespace_cif.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/classcif_1_1matrix__fixed.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1compound__bond.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/structcif_1_1category_1_1link.html +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/api/function_namespacecif_1a9a07496ad027d7f53edeba05b8946d15.html +-- Installing: 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+-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/classcif_1_1gzio_1_1basic__ifstream.rst.txt +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/typedef_namespacecif_1ae5965db5577f7f70118a5d976232d966.rst.txt +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/function_namespacecif_1a2e9af2d268ca7932d3b5df430dfabfe7.rst.txt +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/classcif_1_1mm_1_1atom.rst.txt +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/enum_namespacecif_1aeffd144259eee54425fd70df1a4c119a.rst.txt +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/api/structcif_1_1category_1_1item__entry.rst.txt +-- Installing: 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/build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/symmetry.rst.txt +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/model.rst.txt +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/resources.rst.txt +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_sources/index.rst.txt +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/objects.inv +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/language_data.js +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/fonts +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/fonts/fontawesome-webfont.ttf +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/fonts/Lato-Italic.ttf +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/fonts/Lato-BoldItalic.ttf +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/fonts/RobotoSlab-Bold.woff2 +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/fonts/Lato-Regular.woff2 +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/fonts/Lato-Italic.woff2 +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/fonts/Lato-Regular.ttf +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/fonts/Lato-BoldItalic.woff2 +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/fonts/Lato-Bold.woff2 +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/fonts/fontawesome-webfont.eot +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/fonts/fontawesome-webfont.svg +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/fonts/fontawesome-webfont.woff +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/fonts/fontawesome-webfont.woff2 +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/fonts/Lato-Bold.ttf +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/fonts/RobotoSlab-Regular.woff2 +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/searchtools.js +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/documentation_options.js +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/doctools.js +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/js +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/js/versions.js +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/js/theme.js +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/_sphinx_javascript_frameworks_compat.js +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/css +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/css/badge_only.css +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/css/theme.css +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/jquery.js +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/sphinx_highlight.js +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/pygments.css +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/basic.css +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/minus.png +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/plus.png +-- Installing: /build/reproducible-path/libcifpp-7.0.7/debian/tmp/usr/share/doc/libcifpp/_static/file.png make[1]: Leaving directory '/build/reproducible-path/libcifpp-7.0.7/obj-i686-linux-gnu' dh_install install -m0755 -d debian/libcifpp-dev//usr @@ -8832,15 +8866,15 @@ install -m0755 -d debian/libcifpp-data/usr/share/doc/libcifpp-data install -p -m0644 debian/copyright debian/libcifpp-data/usr/share/doc/libcifpp-data/copyright dh_installchangelogs - install -m0755 -d debian/libcifpp-dev/usr/share/doc/libcifpp-dev - install -p -m0644 debian/.debhelper/generated/libcifpp-dev/dh_installchangelogs.dch.trimmed debian/libcifpp-dev/usr/share/doc/libcifpp-dev/changelog.Debian - install -p -m0644 ./changelog debian/libcifpp-dev/usr/share/doc/libcifpp-dev/changelog - install -m0755 -d debian/libcifpp7/usr/share/doc/libcifpp7 - install -p -m0644 debian/.debhelper/generated/libcifpp7/dh_installchangelogs.dch.trimmed debian/libcifpp7/usr/share/doc/libcifpp7/changelog.Debian - install -p -m0644 ./changelog debian/libcifpp7/usr/share/doc/libcifpp7/changelog install -m0755 -d debian/libcifpp-doc/usr/share/doc/libcifpp-doc install -p -m0644 debian/.debhelper/generated/libcifpp-doc/dh_installchangelogs.dch.trimmed debian/libcifpp-doc/usr/share/doc/libcifpp-doc/changelog.Debian install -p -m0644 ./changelog debian/libcifpp-doc/usr/share/doc/libcifpp-doc/changelog + install -m0755 -d debian/libcifpp7/usr/share/doc/libcifpp7 + install -p -m0644 debian/.debhelper/generated/libcifpp7/dh_installchangelogs.dch.trimmed debian/libcifpp7/usr/share/doc/libcifpp7/changelog.Debian + install -p -m0644 ./changelog debian/libcifpp7/usr/share/doc/libcifpp7/changelog + install -m0755 -d debian/libcifpp-dev/usr/share/doc/libcifpp-dev + install -p -m0644 debian/.debhelper/generated/libcifpp-dev/dh_installchangelogs.dch.trimmed debian/libcifpp-dev/usr/share/doc/libcifpp-dev/changelog.Debian + install -p -m0644 ./changelog debian/libcifpp-dev/usr/share/doc/libcifpp-dev/changelog install -m0755 -d debian/libcifpp-data/usr/share/doc/libcifpp-data install -p -m0644 debian/.debhelper/generated/libcifpp-data/dh_installchangelogs.dch.trimmed debian/libcifpp-data/usr/share/doc/libcifpp-data/changelog.Debian install -p -m0644 ./changelog debian/libcifpp-data/usr/share/doc/libcifpp-data/changelog @@ -8871,44 +8905,44 @@ Normalizing debian/libcifpp-dev/usr/share/doc/libcifpp-dev/examples/1cbs.cif.gz using File::StripNondeterminism::handlers::gzip Using 1730185215 as canonical time Normalizing debian/libcifpp-doc/usr/share/doc/libcifpp/_static/minus.png using File::StripNondeterminism::handlers::png - Normalizing debian/libcifpp-doc/usr/share/doc/libcifpp/_static/plus.png using File::StripNondeterminism::handlers::png Normalizing debian/libcifpp-doc/usr/share/doc/libcifpp/_static/file.png using File::StripNondeterminism::handlers::png + Normalizing debian/libcifpp-doc/usr/share/doc/libcifpp/_static/plus.png using File::StripNondeterminism::handlers::png dh_compress - cd debian/libcifpp-doc - cd debian/libcifpp-data cd debian/libcifpp-dev cd debian/libcifpp7 + cd debian/libcifpp-data + cd debian/libcifpp-doc + chmod a-x usr/share/doc/libcifpp-data/changelog usr/share/doc/libcifpp-data/changelog.Debian chmod a-x usr/share/doc/libcifpp-dev/changelog usr/share/doc/libcifpp-dev/changelog.Debian - chmod a-x usr/share/doc/libcifpp-doc/changelog usr/share/doc/libcifpp-doc/changelog.Debian usr/share/doc/libcifpp/_static/fonts/Lato-Bold.ttf usr/share/doc/libcifpp/_static/fonts/Lato-BoldItalic.ttf usr/share/doc/libcifpp/_static/fonts/Lato-Italic.ttf usr/share/doc/libcifpp/_static/fonts/Lato-Regular.ttf usr/share/doc/libcifpp/_static/fonts/fontawesome-webfont.eot usr/share/doc/libcifpp/_static/fonts/fontawesome-webfont.ttf gzip -9nf usr/share/doc/libcifpp-dev/changelog usr/share/doc/libcifpp-dev/changelog.Debian - chmod a-x usr/share/doc/libcifpp7/README.md usr/share/doc/libcifpp7/changelog usr/share/doc/libcifpp7/changelog.Debian - gzip -9nf usr/share/doc/libcifpp-doc/changelog usr/share/doc/libcifpp-doc/changelog.Debian usr/share/doc/libcifpp/_static/fonts/Lato-Bold.ttf usr/share/doc/libcifpp/_static/fonts/Lato-BoldItalic.ttf usr/share/doc/libcifpp/_static/fonts/Lato-Italic.ttf usr/share/doc/libcifpp/_static/fonts/Lato-Regular.ttf usr/share/doc/libcifpp/_static/fonts/fontawesome-webfont.eot usr/share/doc/libcifpp/_static/fonts/fontawesome-webfont.ttf - gzip -9nf usr/share/doc/libcifpp7/README.md usr/share/doc/libcifpp7/changelog usr/share/doc/libcifpp7/changelog.Debian - chmod a-x usr/share/doc/libcifpp-data/changelog usr/share/doc/libcifpp-data/changelog.Debian gzip -9nf usr/share/doc/libcifpp-data/changelog usr/share/doc/libcifpp-data/changelog.Debian cd '/build/reproducible-path/libcifpp-7.0.7' + chmod a-x usr/share/doc/libcifpp-doc/changelog usr/share/doc/libcifpp-doc/changelog.Debian usr/share/doc/libcifpp/_static/fonts/Lato-Bold.ttf usr/share/doc/libcifpp/_static/fonts/Lato-BoldItalic.ttf usr/share/doc/libcifpp/_static/fonts/Lato-Italic.ttf usr/share/doc/libcifpp/_static/fonts/Lato-Regular.ttf usr/share/doc/libcifpp/_static/fonts/fontawesome-webfont.eot usr/share/doc/libcifpp/_static/fonts/fontawesome-webfont.ttf cd '/build/reproducible-path/libcifpp-7.0.7' + gzip -9nf usr/share/doc/libcifpp-doc/changelog usr/share/doc/libcifpp-doc/changelog.Debian usr/share/doc/libcifpp/_static/fonts/Lato-Bold.ttf usr/share/doc/libcifpp/_static/fonts/Lato-BoldItalic.ttf usr/share/doc/libcifpp/_static/fonts/Lato-Italic.ttf usr/share/doc/libcifpp/_static/fonts/Lato-Regular.ttf usr/share/doc/libcifpp/_static/fonts/fontawesome-webfont.eot usr/share/doc/libcifpp/_static/fonts/fontawesome-webfont.ttf + chmod a-x usr/share/doc/libcifpp7/README.md usr/share/doc/libcifpp7/changelog usr/share/doc/libcifpp7/changelog.Debian + gzip -9nf usr/share/doc/libcifpp7/README.md usr/share/doc/libcifpp7/changelog usr/share/doc/libcifpp7/changelog.Debian cd '/build/reproducible-path/libcifpp-7.0.7' cd '/build/reproducible-path/libcifpp-7.0.7' dh_fixperms find debian/libcifpp-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libcifpp-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s - find debian/libcifpp7 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libcifpp-data ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s + find debian/libcifpp7 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s + find debian/libcifpp-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/libcifpp-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcifpp7/usr/share/doc -type f -a -true -a ! -regex 'debian/libcifpp7/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcifpp-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libcifpp-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcifpp-data/usr/share/doc -type f -a -true -a ! -regex 'debian/libcifpp-data/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcifpp-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 - find debian/libcifpp-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/libcifpp-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/libcifpp-data/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libcifpp7/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 + find debian/libcifpp-data/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libcifpp-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcifpp-data -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/libcifpp-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcifpp7 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcifpp-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 - find debian/libcifpp-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w + find debian/libcifpp-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libcifpp7/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w + find debian/libcifpp-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libcifpp-doc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 dh_missing dh_dwz -a @@ -8952,55 +8986,55 @@ ' | LC_ALL=C sort >> debian/libcifpp-data/DEBIAN/conffiles chmod 0644 -- debian/libcifpp-data/DEBIAN/conffiles dh_gencontrol + install -m0755 -d debian/libcifpp-data/DEBIAN + echo misc:Pre-Depends= >> debian/libcifpp-data.substvars + dpkg-gencontrol -plibcifpp-data -ldebian/changelog -Tdebian/libcifpp-data.substvars -cdebian/control -Pdebian/libcifpp-data install -m0755 -d debian/libcifpp-doc/DEBIAN echo misc:Depends= >> debian/libcifpp-doc.substvars echo misc:Pre-Depends= >> debian/libcifpp-doc.substvars dpkg-gencontrol -plibcifpp-doc -ldebian/changelog -Tdebian/libcifpp-doc.substvars -cdebian/control -Pdebian/libcifpp-doc + install -m0755 -d debian/libcifpp-dev/DEBIAN + echo misc:Depends= >> debian/libcifpp-dev.substvars + echo misc:Pre-Depends= >> debian/libcifpp-dev.substvars + dpkg-gencontrol -plibcifpp-dev -ldebian/changelog -Tdebian/libcifpp-dev.substvars -cdebian/control -Pdebian/libcifpp-dev install -m0755 -d debian/libcifpp7/DEBIAN echo misc:Depends= >> debian/libcifpp7.substvars echo misc:Pre-Depends= >> debian/libcifpp7.substvars install -m0755 -d debian/.debhelper/libcifpp7/dbgsym-root/DEBIAN dpkg-gencontrol -plibcifpp7 -ldebian/changelog -Tdebian/libcifpp7.substvars -cdebian/control -Pdebian/.debhelper/libcifpp7/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=libcifpp7-dbgsym "-DDepends=libcifpp7 (= \${binary:Version})" "-DDescription=debug symbols for libcifpp7" -DBuild-Ids=4a8ceef9cc71fd799fcd6b950ec1e13c0ecb001b -DSection=debug -UReplaces -UBreaks - install -m0755 -d debian/libcifpp-dev/DEBIAN - echo misc:Depends= >> debian/libcifpp-dev.substvars - echo misc:Pre-Depends= >> debian/libcifpp-dev.substvars - dpkg-gencontrol -plibcifpp-dev -ldebian/changelog -Tdebian/libcifpp-dev.substvars -cdebian/control -Pdebian/libcifpp-dev - install -m0755 -d debian/libcifpp-data/DEBIAN - echo misc:Pre-Depends= >> debian/libcifpp-data.substvars - dpkg-gencontrol -plibcifpp-data -ldebian/changelog -Tdebian/libcifpp-data.substvars -cdebian/control -Pdebian/libcifpp-data chmod 0644 -- debian/libcifpp-dev/DEBIAN/control - chmod 0644 -- debian/libcifpp-data/DEBIAN/control chmod 0644 -- debian/.debhelper/libcifpp7/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibcifpp7 -ldebian/changelog -Tdebian/libcifpp7.substvars -cdebian/control -Pdebian/libcifpp7 + chmod 0644 -- debian/libcifpp-data/DEBIAN/control chmod 0644 -- debian/libcifpp-doc/DEBIAN/control chmod 0644 -- debian/libcifpp7/DEBIAN/control dh_md5sums + install -m0755 -d debian/libcifpp-data/DEBIAN install -m0755 -d debian/libcifpp-dev/DEBIAN + install -m0755 -d debian/libcifpp7/DEBIAN + cd debian/libcifpp-data >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums install -m0755 -d debian/libcifpp-doc/DEBIAN - install -m0755 -d debian/libcifpp-data/DEBIAN cd debian/libcifpp-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums - cd debian/libcifpp-data >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums - install -m0755 -d debian/libcifpp7/DEBIAN cd debian/libcifpp-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libcifpp7 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libcifpp-dev/DEBIAN/md5sums + chmod 0644 -- debian/libcifpp-data/DEBIAN/md5sums chmod 0644 -- debian/libcifpp7/DEBIAN/md5sums install -m0755 -d debian/.debhelper/libcifpp7/dbgsym-root/DEBIAN cd debian/.debhelper/libcifpp7/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums - chmod 0644 -- debian/libcifpp-data/DEBIAN/md5sums chmod 0644 -- debian/libcifpp-doc/DEBIAN/md5sums chmod 0644 -- debian/.debhelper/libcifpp7/dbgsym-root/DEBIAN/md5sums dh_builddeb - dpkg-deb --root-owner-group --build debian/libcifpp-doc .. dpkg-deb --root-owner-group --build debian/libcifpp-dev .. - dpkg-deb --root-owner-group --build debian/.debhelper/libcifpp7/dbgsym-root .. + dpkg-deb --root-owner-group --build debian/libcifpp-doc .. dpkg-deb --root-owner-group --build debian/libcifpp7 .. dpkg-deb --root-owner-group --build debian/libcifpp-data .. -dpkg-deb: building package 'libcifpp7-dbgsym' in '../libcifpp7-dbgsym_7.0.7-3_i386.deb'. -dpkg-deb: building package 'libcifpp-doc' in '../libcifpp-doc_7.0.7-3_all.deb'. dpkg-deb: building package 'libcifpp-dev' in '../libcifpp-dev_7.0.7-3_i386.deb'. -dpkg-deb: building package 'libcifpp7' in '../libcifpp7_7.0.7-3_i386.deb'. + dpkg-deb --root-owner-group --build debian/.debhelper/libcifpp7/dbgsym-root .. dpkg-deb: building package 'libcifpp-data' in '../libcifpp-data_7.0.7-3_all.deb'. +dpkg-deb: building package 'libcifpp7' in '../libcifpp7_7.0.7-3_i386.deb'. +dpkg-deb: building package 'libcifpp7-dbgsym' in '../libcifpp7-dbgsym_7.0.7-3_i386.deb'. +dpkg-deb: building package 'libcifpp-doc' in '../libcifpp-doc_7.0.7-3_all.deb'. dpkg-genbuildinfo --build=binary -O../libcifpp_7.0.7-3_i386.buildinfo dpkg-genchanges --build=binary -O../libcifpp_7.0.7-3_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -9008,12 +9042,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/14530/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/14530/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/26042 and its subdirectories -I: Current time: Thu Dec 5 12:17:40 -12 2024 -I: pbuilder-time-stamp: 1733444260 +I: removing directory /srv/workspace/pbuilder/14530 and its subdirectories +I: Current time: Thu Jan 8 20:44:36 +14 2026 +I: pbuilder-time-stamp: 1767854676