Diff of the two buildlogs: -- --- b1/build.log 2024-04-05 00:45:30.944163965 +0000 +++ b2/build.log 2024-04-05 00:46:31.157603801 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Apr 4 12:42:29 -12 2024 -I: pbuilder-time-stamp: 1712277749 +I: Current time: Thu May 8 21:08:34 +14 2025 +I: pbuilder-time-stamp: 1746688114 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -36,54 +36,86 @@ dpkg-source: info: applying 0001-Sort-installed-configuration-file-for-reproducibilit.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/23760/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/56437/tmp/hooks/D01_modify_environment starting +debug: Running on ionos16-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 8 07:08 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/56437/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/56437/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=21 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='145c5220a94b4a98a95e26aff419d901' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='23760' - PS1='# ' - PS2='> ' + INVOCATION_ID=103354e5066543b88f4535be4e963a3c + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=56437 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.cZWaHR9S/pbuilderrc_JWDZ --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.cZWaHR9S/b1 --logfile b1/build.log libchado-perl_1.31-6.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://78.137.99.97:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.cZWaHR9S/pbuilderrc_3IKW --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.cZWaHR9S/b2 --logfile b2/build.log libchado-perl_1.31-6.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://85.184.249.68:3128 I: uname -a - Linux ionos12-i386 6.1.0-18-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.76-1 (2024-02-01) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-18-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.76-1 (2024-02-01) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Apr 4 11:26 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/23760/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 6 17:46 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/56437/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -367,7 +399,7 @@ Get: 204 http://deb.debian.org/debian trixie/main i386 libxslt1.1 i386 1.1.35-1 [253 kB] Get: 205 http://deb.debian.org/debian trixie/main i386 libxml-libxslt-perl i386 2.002001-1+b1 [48.9 kB] Get: 206 http://deb.debian.org/debian trixie/main i386 libxml-simple-perl all 2.25-2 [69.8 kB] -Fetched 52.7 MB in 3s (19.5 MB/s) +Fetched 52.7 MB in 1s (71.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package netbase. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19876 files and directories currently installed.) @@ -1233,7 +1265,11 @@ fakeroot is already the newest version (1.33-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/reproducible-path/libchado-perl-1.31/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libchado-perl_1.31-6_source.changes +I: user script /srv/workspace/pbuilder/56437/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/56437/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/libchado-perl-1.31/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libchado-perl_1.31-6_source.changes dpkg-buildpackage: info: source package libchado-perl dpkg-buildpackage: info: source version 1.31-6 dpkg-buildpackage: info: source distribution unstable @@ -1305,35 +1341,35 @@ -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=- make[1]: Leaving directory '/build/reproducible-path/libchado-perl-1.31' dh_auto_build -O--buildsystem=perl_makemaker - make -j11 + make -j21 make[1]: Entering directory '/build/reproducible-path/libchado-perl-1.31' -Skip blib/lib/Bio/GMOD/Config2.pm (unchanged) -Skip blib/lib/Bio/GMOD/Bulkfiles/GenbankSubmitWriter.pm (unchanged) -Skip blib/lib/Bio/GMOD/DB/Adapter/Wormbase.pm (unchanged) -Skip blib/lib/Bio/GMOD/DB/Tools/ETA.pm (unchanged) -Skip blib/lib/Bio/GMOD/Bulkfiles/MySplitLocation.pm (unchanged) -Skip blib/lib/Bio/GMOD/Load/GFF.pm (unchanged) -Skip blib/lib/Bio/GMOD/Bulkfiles/SWISS_CRC64.pm (unchanged) -Skip blib/lib/Bio/GMOD/DB/Config.pm (unchanged) -Skip blib/lib/Bio/Chado/AutoDBI.pm (unchanged) Skip blib/lib/Bio/GMOD/Bulkfiles/AcodeWriter.pm (unchanged) -Skip blib/lib/Bio/GMOD/DB/Adapter.pm (unchanged) -Skip blib/lib/Bio/Chado/Builder.pm (unchanged) -Skip blib/lib/Bio/GMOD/Bulkfiles/BlastWriter.pm (unchanged) -Skip blib/lib/Bio/GMOD/SeqUtils.pm (unchanged) +Skip blib/lib/Bio/GMOD/Load/GFF.pm (unchanged) +Skip blib/lib/Bio/FeatureIO/chado.pm (unchanged) +Skip blib/lib/Bio/GMOD/DB/Adapter/Wormbase.pm (unchanged) +Skip blib/lib/Bio/GMOD/Bulkfiles/MyLargePrimarySeq.pm (unchanged) Skip blib/lib/Bio/FeatureIO/chadobulk.pm (unchanged) +Skip blib/lib/Bio/GMOD/Config2.pm (unchanged) +Skip blib/lib/Bio/GMOD/DB/Adapter.pm (unchanged) Skip blib/lib/Bio/GMOD/Load.pm (unchanged) -Skip blib/lib/Bio/GMOD/Config.pm (unchanged) -Skip blib/lib/Bio/GMOD/Bulkfiles/FeatureWriter.pm (unchanged) -Skip blib/lib/Bio/GMOD/Bulkfiles/MyLargePrimarySeq.pm (unchanged) -Skip blib/lib/Bio/GMOD/Bulkfiles/GnomapWriter.pm (unchanged) +Skip blib/lib/Bio/GMOD/Bulkfiles/SWISS_CRC64.pm (unchanged) Skip blib/lib/Bio/GMOD/Bulkfiles.pm (unchanged) -Skip blib/lib/Bio/GMOD/Bulkfiles/FastaWriter.pm (unchanged) -Skip blib/lib/Bio/FeatureIO/chado.pm (unchanged) -Skip blib/lib/Bio/Chado/Config.pm (unchanged) +Skip blib/lib/Bio/GMOD/Bulkfiles/MySplitLocation.pm (unchanged) Skip blib/lib/Bio/GMOD/Bulkfiles/TableWriter.pm (unchanged) +Skip blib/lib/Bio/Chado/Config.pm (unchanged) +Skip blib/lib/Bio/GMOD/Bulkfiles/GnomapWriter.pm (unchanged) +Skip blib/lib/Bio/GMOD/Bulkfiles/FastaWriter.pm (unchanged) +Skip blib/lib/Bio/GMOD/Bulkfiles/FeatureWriter.pm (unchanged) +Skip blib/lib/Bio/GMOD/Config.pm (unchanged) Skip blib/lib/Bio/GMOD/DB/Adapter/FeatureIterator.pm (unchanged) +Skip blib/lib/Bio/GMOD/Bulkfiles/GenbankSubmitWriter.pm (unchanged) +Skip blib/lib/Bio/GMOD/DB/Config.pm (unchanged) Skip blib/lib/Bio/GMOD/Bulkfiles/BulkWriter.pm (unchanged) +Skip blib/lib/Bio/GMOD/SeqUtils.pm (unchanged) +Skip blib/lib/Bio/GMOD/DB/Tools/ETA.pm (unchanged) +Skip blib/lib/Bio/Chado/Builder.pm (unchanged) +Skip blib/lib/Bio/GMOD/Bulkfiles/BlastWriter.pm (unchanged) +Skip blib/lib/Bio/Chado/AutoDBI.pm (unchanged) "/usr/bin/perl" "-Iblib/arch" "-Iblib/lib" load/bin/bulk_load_gff3.PLS load/bin/gmod_bulk_load_gff3.pl "/usr/bin/perl" "-Iblib/arch" "-Iblib/lib" install_util/conf_install.PLS install_util/conf_install.pl Extracting conf_install.pl (with variable substitutions) @@ -1342,26 +1378,26 @@ cp bin/gmod_add_organism.pl blib/script/gmod_add_organism.pl cp bin/gmod_apollo_triggers.pl blib/script/gmod_apollo_triggers.pl cp load/bin/gmod_bulk_load_gff3.pl blib/script/gmod_bulk_load_gff3.pl -cp bin/gmod_bulk_load_pubmed.pl blib/script/gmod_bulk_load_pubmed.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_add_organism.pl +cp bin/gmod_bulk_load_pubmed.pl blib/script/gmod_bulk_load_pubmed.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_apollo_triggers.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_bulk_load_gff3.pl -"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_bulk_load_pubmed.pl cp bin/gmod_chado_properties.pl blib/script/gmod_chado_properties.pl -cp bin/gmod_extract_dbxref_from_gff.pl blib/script/gmod_extract_dbxref_from_gff.pl +"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_bulk_load_pubmed.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_chado_properties.pl -"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_extract_dbxref_from_gff.pl +cp bin/gmod_extract_dbxref_from_gff.pl blib/script/gmod_extract_dbxref_from_gff.pl cp bin/gmod_fasta2gff3.pl blib/script/gmod_fasta2gff3.pl -cp bin/gmod_gff3_preprocessor.pl blib/script/gmod_gff3_preprocessor.pl +"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_extract_dbxref_from_gff.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_fasta2gff3.pl -"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_gff3_preprocessor.pl +cp bin/gmod_gff3_preprocessor.pl blib/script/gmod_gff3_preprocessor.pl cp bin/gmod_load_cvterms.pl blib/script/gmod_load_cvterms.pl cp bin/gmod_make_cvtermpath.pl blib/script/gmod_make_cvtermpath.pl +"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_gff3_preprocessor.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_load_cvterms.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_make_cvtermpath.pl cp bin/gmod_make_gff_from_dbxref.pl blib/script/gmod_make_gff_from_dbxref.pl -"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_make_gff_from_dbxref.pl cp bin/gmod_materialized_view_tool.pl blib/script/gmod_materialized_view_tool.pl +"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_make_gff_from_dbxref.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_materialized_view_tool.pl cp bin/gmod_sort_gff3.pl blib/script/gmod_sort_gff3.pl "/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/gmod_sort_gff3.pl @@ -1380,125 +1416,125 @@ dh_prep -O--buildsystem=perl_makemaker dh_installdirs -O--buildsystem=perl_makemaker dh_auto_install -O--buildsystem=perl_makemaker - make -j11 install DESTDIR=/build/reproducible-path/libchado-perl-1.31/debian/tmp AM_UPDATE_INFO_DIR=no PREFIX=/usr + make -j21 install DESTDIR=/build/reproducible-path/libchado-perl-1.31/debian/tmp AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/reproducible-path/libchado-perl-1.31' "/usr/bin/perl" "/build/reproducible-path/libchado-perl-1.31/install_util/conf_install.pl" 'GMOD_ROOT=/build/reproducible-path/libchado-perl-1.31/debian/libchado-perl/usr/share/gmod/chado' 'VERSION=1.31' "/usr/bin/perl" "/build/reproducible-path/libchado-perl-1.31/install_util/src_install.pl" 'GMOD_ROOT=/build/reproducible-path/libchado-perl-1.31/debian/libchado-perl/usr/share/gmod/chado' Manifying 12 pod documents Manifying 26 pod documents Appending installation info to /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/i686-linux-gnu-thread-multi-64int/perllocal.pod +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/Chado/Builder.pm +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/Chado/AutoDBI.pm +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/Chado/Config.pm Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Load.pm Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Config2.pm Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles.pm Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Config.pm Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/SeqUtils.pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/GnomapWriter.pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/SWISS_CRC64.pm +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/MySplitLocation.pm +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/FeatureWriter.pm Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/GenbankSubmitWriter.pm Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/BulkWriter.pm Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/TableWriter.pm +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/BlastWriter.pm +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/GnomapWriter.pm Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/MyLargePrimarySeq.pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/AcodeWriter.pm Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/FastaWriter.pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/BlastWriter.pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/FeatureWriter.pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/MySplitLocation.pm +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/AcodeWriter.pm +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Bulkfiles/SWISS_CRC64.pm Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/Load/GFF.pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/DB/Adapter.pm Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/DB/Config.pm +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/DB/Adapter.pm Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/DB/Tools/ETA.pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/DB/Adapter/Wormbase.pm Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/DB/Adapter/FeatureIterator.pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/Chado/AutoDBI.pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/Chado/Builder.pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/Chado/Config.pm +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/GMOD/DB/Adapter/Wormbase.pm Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/FeatureIO/chadobulk.pm Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/lib/perl5/Bio/FeatureIO/chado.pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_gff3_preprocessor.pl.1p +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_chado_properties.pl.1p Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_sort_gff3.pl.1p -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_make_cvtermpath.pl.1p -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_add_organism.pl.1p -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_bulk_load_gff3.pl.1p +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_load_cvterms.pl.1p Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_extract_dbxref_from_gff.pl.1p +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_add_organism.pl.1p Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_fasta2gff3.pl.1p -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_bulk_load_pubmed.pl.1p -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_materialized_view_tool.pl.1p -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_chado_properties.pl.1p -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_load_cvterms.pl.1p Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_make_gff_from_dbxref.pl.1p +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_make_cvtermpath.pl.1p +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_materialized_view_tool.pl.1p +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_gff3_preprocessor.pl.1p +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_bulk_load_gff3.pl.1p +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man1/gmod_bulk_load_pubmed.pl.1p +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::GenbankSubmitWriter.3pm Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::Chado::Builder.3pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::BlastWriter.3pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::SWISS_CRC64.3pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::AcodeWriter.3pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::SeqUtils.3pm +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::DB::Config.3pm Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::DB::Tools::ETA.3pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles.3pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::MySplitLocation.3pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::DB::Adapter::FeatureIterator.3pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::GenbankSubmitWriter.3pm Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::FeatureIO::chado.3pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::MyLargePrimarySeq.3pm +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::BlastWriter.3pm +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Load.3pm Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Config.3pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::BulkWriter.3pm Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::FeatureWriter.3pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::Chado::Config.3pm +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles.3pm Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Load::GFF.3pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Load.3pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::DB::Adapter::Wormbase.3pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::DB::Config.3pm +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::DB::Adapter.3pm +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::MySplitLocation.3pm Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Config2.3pm Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::TableWriter.3pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::DB::Adapter.3pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::FastaWriter.3pm +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::SeqUtils.3pm Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::FeatureIO::chadobulk.3pm +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::FastaWriter.3pm +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::Chado::Config.3pm +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::SWISS_CRC64.3pm Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::GnomapWriter.3pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/AutoDBI.PL -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_apollo_triggers.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/addcascades -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/pg2diagram.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_dump_gff3.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_bulk_load_gff3.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/test_load.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_update_chado.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/chado-fix-flybase-instance.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/make_partial_indexes.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_load_cvterms.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/make_cvtermpath.pl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::BulkWriter.3pm +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::DB::Adapter::FeatureIterator.3pm +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::MyLargePrimarySeq.3pm +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::DB::Adapter::Wormbase.3pm +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/man/man3/Bio::GMOD::Bulkfiles::AcodeWriter.3pm +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/create_so_bridge_command Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/Skip_tables.pm -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/test_load.sh -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/config.PLS -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_fasta2gff3.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/ucsc_snp2gff.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_sort_gff3.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/load_ncbi_taxonomy.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/ucsc_genes2gff.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/load_taxonomy_cvterms.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_chado_properties.pl Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_bulk_load_pubmed.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/make_cvtermpath.sh -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_add_organism.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/GMODCallHome.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_make_gff_from_dbxref.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_extract_dbxref_from_gff.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/pg2graphviz.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_make_cvtermpath.pl Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/pg2cdbi_viaTT.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/create-bridge-sql.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/dbi.tt2 +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_sort_gff3.pl Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_materialized_view_tool.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/pg2cdbi.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/privileges.tmpl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/chado-build-schema.pl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/make_cvtermpath.sh Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gencode2sql.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/pg2html.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_bulkfiles.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/pg2graphviz_svg.pl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_dump_gff3.pl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/config.PLS +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/pg2diagram.pl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/test_load.pl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_make_gff_from_dbxref.pl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/privileges.tmpl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/addcascades Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_gff2biomart5.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/ddltrans +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_fasta2gff3.pl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_add_organism.pl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_chado_properties.pl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/ucsc_snp2gff.pl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/test_load.sh +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_bulkfiles.pl Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/create-so-bridge.pl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/ddltrans +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/AutoDBI.PL +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_update_chado.pl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/make_cvtermpath.pl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/create-bridge-sql.pl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_extract_dbxref_from_gff.pl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_apollo_triggers.pl Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_gff3_preprocessor.pl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/ucsc_genes2gff.pl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/chado-build-schema.pl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_load_cvterms.pl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/pg2cdbi.pl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/chado-fix-flybase-instance.pl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/dbi.tt2 +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/load_ncbi_taxonomy.pl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/pg2html.pl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_make_cvtermpath.pl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/pg2graphviz_svg.pl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/make_partial_indexes.pl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/load_taxonomy_cvterms.pl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/gmod_bulk_load_gff3.pl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/pg2graphviz.pl +Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/GMODCallHome.pl Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/interactions2SIF.pl -Installing /build/reproducible-path/libchado-perl-1.31/debian/tmp/usr/bin/create_so_bridge_command make[1]: Leaving directory '/build/reproducible-path/libchado-perl-1.31' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/libchado-perl-1.31' @@ -1579,12 +1615,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/56437/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/56437/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/23760 and its subdirectories -I: Current time: Thu Apr 4 12:45:29 -12 2024 -I: pbuilder-time-stamp: 1712277929 +I: removing directory /srv/workspace/pbuilder/56437 and its subdirectories +I: Current time: Thu May 8 21:09:30 +14 2025 +I: pbuilder-time-stamp: 1746688170