Diff of the two buildlogs: -- --- b1/build.log 2024-11-27 05:56:14.175422142 +0000 +++ b2/build.log 2024-11-27 05:57:07.924987876 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Dec 30 00:18:36 -12 2025 -I: pbuilder-time-stamp: 1767097116 +I: Current time: Wed Nov 27 19:56:17 +14 2024 +I: pbuilder-time-stamp: 1732686977 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -29,53 +29,85 @@ dpkg-source: info: applying unforce-cxxflags.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/4855/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/28320/tmp/hooks/D01_modify_environment starting +debug: Running on infom07-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Nov 27 05:56 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/28320/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/28320/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=6 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=5 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='109b6b67e39e4f8b8cdc769514aa4535' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='4855' - PS1='# ' - PS2='> ' + INVOCATION_ID=c09df216564749a3991107a1b7345184 + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=28320 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.jKW6g8Dt/pbuilderrc_jszj --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.jKW6g8Dt/b1 --logfile b1/build.log libbpp-phyl-omics_2.4.1-7.dsc' - SUDO_GID='111' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.jKW6g8Dt/pbuilderrc_sziX --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.jKW6g8Dt/b2 --logfile b2/build.log libbpp-phyl-omics_2.4.1-7.dsc' + SUDO_GID=111 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' I: uname -a - Linux infom08-i386 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/4855/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/28320/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -181,7 +213,7 @@ Get: 60 http://deb.debian.org/debian trixie/main i386 libbpp-phyl-dev i386 2.4.1-11+b1 [3115 kB] Get: 61 http://deb.debian.org/debian trixie/main i386 libbpp-seq-omics3t64 i386 2.4.1-12 [243 kB] Get: 62 http://deb.debian.org/debian trixie/main i386 libbpp-seq-omics-dev i386 2.4.1-12 [394 kB] -Fetched 47.3 MB in 1s (33.3 MB/s) +Fetched 47.3 MB in 0s (96.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19956 files and directories currently installed.) @@ -444,7 +476,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/libbpp-phyl-omics-2.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbpp-phyl-omics_2.4.1-7_source.changes +I: user script /srv/workspace/pbuilder/28320/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/28320/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/libbpp-phyl-omics-2.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libbpp-phyl-omics_2.4.1-7_source.changes dpkg-buildpackage: info: source package libbpp-phyl-omics dpkg-buildpackage: info: source version 2.4.1-7 dpkg-buildpackage: info: source distribution unstable @@ -503,7 +539,7 @@ -- Build files have been written to: /build/reproducible-path/libbpp-phyl-omics-2.4.1/obj-i686-linux-gnu dh_auto_build - cd obj-i686-linux-gnu && make -j6 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-i686-linux-gnu && make -j5 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libbpp-phyl-omics-2.4.1/obj-i686-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/libbpp-phyl-omics-2.4.1 -B/build/reproducible-path/libbpp-phyl-omics-2.4.1/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libbpp-phyl-omics-2.4.1/obj-i686-linux-gnu/CMakeFiles /build/reproducible-path/libbpp-phyl-omics-2.4.1/obj-i686-linux-gnu//CMakeFiles/progress.marks @@ -517,59 +553,59 @@ cd /build/reproducible-path/libbpp-phyl-omics-2.4.1/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libbpp-phyl-omics-2.4.1 /build/reproducible-path/libbpp-phyl-omics-2.4.1/src /build/reproducible-path/libbpp-phyl-omics-2.4.1/obj-i686-linux-gnu /build/reproducible-path/libbpp-phyl-omics-2.4.1/obj-i686-linux-gnu/src /build/reproducible-path/libbpp-phyl-omics-2.4.1/obj-i686-linux-gnu/src/CMakeFiles/bpp-phyl-omics-shared.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/libbpp-phyl-omics-2.4.1/obj-i686-linux-gnu' make -f src/CMakeFiles/bpp-phyl-omics-static.dir/build.make src/CMakeFiles/bpp-phyl-omics-static.dir/build +make[3]: Entering directory '/build/reproducible-path/libbpp-phyl-omics-2.4.1/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/libbpp-phyl-omics-2.4.1/obj-i686-linux-gnu' make -f src/CMakeFiles/bpp-phyl-omics-shared.dir/build.make src/CMakeFiles/bpp-phyl-omics-shared.dir/build make[3]: Entering directory '/build/reproducible-path/libbpp-phyl-omics-2.4.1/obj-i686-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/libbpp-phyl-omics-2.4.1/obj-i686-linux-gnu' +[ 5%] Building CXX object src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.cpp.o +cd /build/reproducible-path/libbpp-phyl-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-phyl-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-phyl-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.cpp.o -MF CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.cpp.o.d -o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.cpp.o -c /build/reproducible-path/libbpp-phyl-omics-2.4.1/src/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.cpp [ 10%] Building CXX object src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.cpp.o -[ 10%] Building CXX object src/CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp.o -[ 20%] Building CXX object src/CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.cpp.o -[ 20%] Building CXX object src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp.o -[ 25%] Building CXX object src/CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.cpp.o +[ 15%] Building CXX object src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp.o cd /build/reproducible-path/libbpp-phyl-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-phyl-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-phyl-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.cpp.o -MF CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.cpp.o.d -o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.cpp.o -c /build/reproducible-path/libbpp-phyl-omics-2.4.1/src/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.cpp -cd /build/reproducible-path/libbpp-phyl-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -Dbpp_phyl_omics_shared_EXPORTS -I/build/reproducible-path/libbpp-phyl-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-phyl-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp.o -MF CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp.o.d -o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp.o -c /build/reproducible-path/libbpp-phyl-omics-2.4.1/src/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp cd /build/reproducible-path/libbpp-phyl-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-phyl-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-phyl-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp.o -MF CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp.o.d -o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp.o -c /build/reproducible-path/libbpp-phyl-omics-2.4.1/src/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp -[ 30%] Building CXX object src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.cpp.o +[ 20%] Building CXX object src/CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp.o +cd /build/reproducible-path/libbpp-phyl-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -Dbpp_phyl_omics_shared_EXPORTS -I/build/reproducible-path/libbpp-phyl-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-phyl-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp.o -MF CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp.o.d -o CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp.o -c /build/reproducible-path/libbpp-phyl-omics-2.4.1/src/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp +[ 25%] Building CXX object src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.cpp.o +cd /build/reproducible-path/libbpp-phyl-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-phyl-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-phyl-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.cpp.o -MF CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.cpp.o.d -o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.cpp.o -c /build/reproducible-path/libbpp-phyl-omics-2.4.1/src/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.cpp +[ 30%] Building CXX object src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.cpp.o +cd /build/reproducible-path/libbpp-phyl-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-phyl-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-phyl-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.cpp.o -MF CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.cpp.o.d -o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.cpp.o -c /build/reproducible-path/libbpp-phyl-omics-2.4.1/src/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.cpp +[ 35%] Building CXX object src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp.o +cd /build/reproducible-path/libbpp-phyl-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-phyl-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-phyl-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp.o -MF CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp.o.d -o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp.o -c /build/reproducible-path/libbpp-phyl-omics-2.4.1/src/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp +[ 40%] Building CXX object src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/FilterTreeMafIterator.cpp.o +cd /build/reproducible-path/libbpp-phyl-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-phyl-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-phyl-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/FilterTreeMafIterator.cpp.o -MF CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/FilterTreeMafIterator.cpp.o.d -o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/FilterTreeMafIterator.cpp.o -c /build/reproducible-path/libbpp-phyl-omics-2.4.1/src/Bpp/Seq/Io/Maf/FilterTreeMafIterator.cpp +[ 45%] Building CXX object src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp.o +cd /build/reproducible-path/libbpp-phyl-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-phyl-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-phyl-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp.o -MF CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp.o.d -o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp.o -c /build/reproducible-path/libbpp-phyl-omics-2.4.1/src/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp +[ 50%] Building CXX object 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src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp.o -cd /build/reproducible-path/libbpp-phyl-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-phyl-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-phyl-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp.o -MF CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp.o.d -o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp.o -c /build/reproducible-path/libbpp-phyl-omics-2.4.1/src/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp -[ 60%] Building CXX object src/CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp.o +[ 75%] Building CXX object 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"CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/FilterTreeMafIterator.cpp.o" "CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp.o" "CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp.o" +/usr/bin/ranlib libbpp-phyl-omics.a +make[3]: Leaving directory '/build/reproducible-path/libbpp-phyl-omics-2.4.1/obj-i686-linux-gnu' +[ 80%] Built target bpp-phyl-omics-static +[ 85%] Building CXX object src/CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/FilterTreeMafIterator.cpp.o cd /build/reproducible-path/libbpp-phyl-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -Dbpp_phyl_omics_shared_EXPORTS -I/build/reproducible-path/libbpp-phyl-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-phyl-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT 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CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp.o -c /build/reproducible-path/libbpp-phyl-omics-2.4.1/src/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp -[ 90%] Building CXX object src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp.o -cd /build/reproducible-path/libbpp-phyl-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/libbpp-phyl-omics-2.4.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-phyl-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT src/CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp.o -MF CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp.o.d -o CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp.o -c /build/reproducible-path/libbpp-phyl-omics-2.4.1/src/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp -[ 95%] Linking CXX shared library libbpp-phyl-omics.so +[100%] Linking CXX shared library libbpp-phyl-omics.so cd /build/reproducible-path/libbpp-phyl-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-phyl-omics-shared.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/libbpp-phyl-omics-2.4.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libbpp-phyl-omics.so.3 -o libbpp-phyl-omics.so.3.0.0 "CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp.o" "CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.cpp.o" "CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.cpp.o" "CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.cpp.o" "CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.cpp.o" "CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp.o" "CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/FilterTreeMafIterator.cpp.o" "CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp.o" "CMakeFiles/bpp-phyl-omics-shared.dir/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp.o" /usr/lib/i386-linux-gnu/libbpp-seq-omics.so.3.0.0 /usr/lib/i386-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/i386-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/i386-linux-gnu/libbpp-core.so.4.1.0 cd /build/reproducible-path/libbpp-phyl-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/cmake -E cmake_symlink_library libbpp-phyl-omics.so.3.0.0 libbpp-phyl-omics.so.3 libbpp-phyl-omics.so make[3]: Leaving directory '/build/reproducible-path/libbpp-phyl-omics-2.4.1/obj-i686-linux-gnu' -[ 95%] Built target bpp-phyl-omics-shared -[100%] Linking CXX static library libbpp-phyl-omics.a -cd /build/reproducible-path/libbpp-phyl-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/bpp-phyl-omics-static.dir/cmake_clean_target.cmake -cd /build/reproducible-path/libbpp-phyl-omics-2.4.1/obj-i686-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpp-phyl-omics-static.dir/link.txt --verbose=1 -/usr/bin/ar qc libbpp-phyl-omics.a "CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/CountClustersMafStatistics.cpp.o" "CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.cpp.o" "CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.cpp.o" "CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.cpp.o" "CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.cpp.o" "CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.cpp.o" "CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/FilterTreeMafIterator.cpp.o" "CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/OutputTreeMafIterator.cpp.o" "CMakeFiles/bpp-phyl-omics-static.dir/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.cpp.o" -/usr/bin/ranlib libbpp-phyl-omics.a -make[3]: Leaving directory '/build/reproducible-path/libbpp-phyl-omics-2.4.1/obj-i686-linux-gnu' -[100%] Built target bpp-phyl-omics-static +[100%] Built target bpp-phyl-omics-shared make[2]: Leaving directory '/build/reproducible-path/libbpp-phyl-omics-2.4.1/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libbpp-phyl-omics-2.4.1/obj-i686-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/libbpp-phyl-omics-2.4.1/obj-i686-linux-gnu' @@ -577,7 +613,7 @@ create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install - cd obj-i686-linux-gnu && make -j6 install DESTDIR=/build/reproducible-path/libbpp-phyl-omics-2.4.1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-i686-linux-gnu && make -j5 install DESTDIR=/build/reproducible-path/libbpp-phyl-omics-2.4.1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/libbpp-phyl-omics-2.4.1/obj-i686-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/libbpp-phyl-omics-2.4.1 -B/build/reproducible-path/libbpp-phyl-omics-2.4.1/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -599,15 +635,15 @@ -- Installing: /build/reproducible-path/libbpp-phyl-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf -- Installing: /build/reproducible-path/libbpp-phyl-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/AbstractPhylogenyReconstructionMafIterator.h -- Installing: /build/reproducible-path/libbpp-phyl-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/OutputDistanceMatrixMafIterator.h --- Installing: /build/reproducible-path/libbpp-phyl-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.h --- Installing: /build/reproducible-path/libbpp-phyl-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/OutputTreeMafIterator.h -- Installing: /build/reproducible-path/libbpp-phyl-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MaximumLikelihoodDistanceEstimationMafIterator.h --- Installing: /build/reproducible-path/libbpp-phyl-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/FilterTreeMafIterator.h --- Installing: /build/reproducible-path/libbpp-phyl-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.h --- Installing: /build/reproducible-path/libbpp-phyl-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/CountClustersMafStatistics.h -- Installing: /build/reproducible-path/libbpp-phyl-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/CountDistanceEstimationMafIterator.h -- Installing: /build/reproducible-path/libbpp-phyl-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/MaximumLikelihoodModelFitMafStatistics.h +-- Installing: /build/reproducible-path/libbpp-phyl-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/TreeManipulationMafIterators.h +-- Installing: /build/reproducible-path/libbpp-phyl-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/DistanceBasedPhylogenyReconstructionMafIterator.h +-- Installing: /build/reproducible-path/libbpp-phyl-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/FilterTreeMafIterator.h -- Installing: /build/reproducible-path/libbpp-phyl-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/AbstractDistanceEstimationMafIterator.h +-- Installing: /build/reproducible-path/libbpp-phyl-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/OutputTreeMafIterator.h +-- Installing: /build/reproducible-path/libbpp-phyl-omics-2.4.1/debian/tmp/usr/include/Bpp/Seq/Io/Maf/CountClustersMafStatistics.h -- Installing: /build/reproducible-path/libbpp-phyl-omics-2.4.1/debian/tmp/usr/lib/i386-linux-gnu/cmake/bpp-phyl-omics/bpp-phyl-omics-targets.cmake -- Installing: /build/reproducible-path/libbpp-phyl-omics-2.4.1/debian/tmp/usr/lib/i386-linux-gnu/cmake/bpp-phyl-omics/bpp-phyl-omics-targets-none.cmake make[1]: Leaving directory '/build/reproducible-path/libbpp-phyl-omics-2.4.1/obj-i686-linux-gnu' @@ -658,9 +694,9 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'libbpp-phyl-omics-dev' in '../libbpp-phyl-omics-dev_2.4.1-7_i386.deb'. -dpkg-deb: building package 'libbpp-phyl-omics3t64' in '../libbpp-phyl-omics3t64_2.4.1-7_i386.deb'. dpkg-deb: building package 'libbpp-phyl-omics3t64-dbgsym' in '../libbpp-phyl-omics3t64-dbgsym_2.4.1-7_i386.deb'. +dpkg-deb: building package 'libbpp-phyl-omics3t64' in '../libbpp-phyl-omics3t64_2.4.1-7_i386.deb'. +dpkg-deb: building package 'libbpp-phyl-omics-dev' in '../libbpp-phyl-omics-dev_2.4.1-7_i386.deb'. dpkg-genbuildinfo --build=binary -O../libbpp-phyl-omics_2.4.1-7_i386.buildinfo dpkg-genchanges --build=binary -O../libbpp-phyl-omics_2.4.1-7_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -668,12 +704,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/28320/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/28320/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/4855 and its subdirectories -I: Current time: Tue Dec 30 00:19:12 -12 2025 -I: pbuilder-time-stamp: 1767097152 +I: removing directory /srv/workspace/pbuilder/28320 and its subdirectories +I: Current time: Wed Nov 27 19:57:07 +14 2024 +I: pbuilder-time-stamp: 1732687027