Diff of the two buildlogs: -- --- b1/build.log 2024-03-29 02:13:49.794424247 +0000 +++ b2/build.log 2024-03-29 02:14:56.643571138 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Apr 30 20:36:11 -12 2025 -I: pbuilder-time-stamp: 1746088571 +I: Current time: Fri Mar 29 16:13:52 +14 2024 +I: pbuilder-time-stamp: 1711678432 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -38,54 +38,86 @@ dpkg-source: info: applying fixup-implicit-function-declaration.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/30700/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/13297/tmp/hooks/D01_modify_environment starting +debug: Running on ionos2-i386. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Mar 29 02:14 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/13297/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/13297/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='i386' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='i386' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="21" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") + BASH_VERSION='5.2.21(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=i386 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=7 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=i686 + HOST_ARCH=i386 IFS=' ' - INVOCATION_ID='5e3d9f7736e7466ab29426255f57ab28' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - LD_LIBRARY_PATH='/usr/lib/libeatmydata' - LD_PRELOAD='libeatmydata.so' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='30700' - PS1='# ' - PS2='> ' + INVOCATION_ID=2b3f33a21a3c480fbffc2741a118bb38 + LANG=C + LANGUAGE=de_CH:de + LC_ALL=C + LD_LIBRARY_PATH=/usr/lib/libeatmydata + LD_PRELOAD=libeatmydata.so + MACHTYPE=i686-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=13297 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.NXej4L6K/pbuilderrc_DmfT --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.NXej4L6K/b1 --logfile b1/build.log lagan_2.0-10.dsc' - SUDO_GID='112' - SUDO_UID='107' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://85.184.249.68:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.NXej4L6K/pbuilderrc_HPVa --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.NXej4L6K/b2 --logfile b2/build.log lagan_2.0-10.dsc' + SUDO_GID=112 + SUDO_UID=107 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://78.137.99.97:3128 I: uname -a - Linux ionos6-i386 6.1.0-18-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.76-1 (2024-02-01) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-18-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.76-1 (2024-02-01) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Apr 28 17:47 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/30700/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Mar 28 11:24 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/13297/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -155,7 +187,7 @@ Get: 30 http://deb.debian.org/debian trixie/main i386 debhelper all 13.14.1 [890 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 libboost1.83-dev i386 1.83.0-2+b2 [10.6 MB] Get: 32 http://deb.debian.org/debian trixie/main i386 libboost-dev i386 1.83.0.2+b2 [3840 B] -Fetched 29.9 MB in 0s (93.1 MB/s) +Fetched 29.9 MB in 1s (48.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19816 files and directories currently installed.) @@ -298,7 +330,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/lagan-2.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../lagan_2.0-10_source.changes +I: user script /srv/workspace/pbuilder/13297/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/13297/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/lagan-2.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../lagan_2.0-10_source.changes dpkg-buildpackage: info: source package lagan dpkg-buildpackage: info: source version 2.0-10 dpkg-buildpackage: info: source distribution unstable @@ -310,7 +346,7 @@ debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/lagan-2.0' dh_auto_clean - make -j22 clean + make -j7 clean make[2]: Entering directory '/build/reproducible-path/lagan-2.0' rm -f chaos anchors order glocal utils/bin2bl mlagan utils/cstat utils/bin2mf utils/rc *~ utils/contigorder utils/getbounds utils/cextract utils/seqmerge utils/getlength utils/getoverlap utils/*~ utils/scorealign utils/scorecontigs mlagan.purify utils/getcontigpos utils/fa2xfa utils/Glue utils/dotplot utils/overlay make -C src clean @@ -333,7 +369,7 @@ debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/lagan-2.0' dh_auto_build --sourcedirectory=src - cd src && make -j22 "INSTALL=install --strip-program=true" + cd src && make -j7 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/lagan-2.0/src' gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/lagan-2.0=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../anchors anchors.c skiplist.c -Wl,-z,relro gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/lagan-2.0=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../chaos fchaos.c thrtrie.c skiplist.c global.c translate.c filebuffer.c -lm -DCHAOS__FLAG -Wl,-z,relro @@ -341,22 +377,82 @@ gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/lagan-2.0=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../mlagan mlagan.c multial.c diagmatrix.c skiplist.c filebuffer.c -lm -DMULTIAL__FLAG -Wl,-z,relro gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/lagan-2.0=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../prolagan prolagan.c multial.c diagmatrix.c skiplist.c filebuffer.c -lm -DMULTIAL__FLAG -Wl,-z,relro gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/lagan-2.0=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/bin2mf utils/bin2mf.c -Wl,-z,relro +anchors.c: In function 'anchors_getline': +anchors.c:232:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] + 232 | fgets(temp, 1024, infile); + | ^~~~~~~~~~~~~~~~~~~~~~~~~ gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/lagan-2.0=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/bin2bl utils/bin2bl.c -Wl,-z,relro +order.c: In function 'readfile': +order.c:63:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] + 63 | fgets(temp, 255, input); + | ^~~~~~~~~~~~~~~~~~~~~~~ +order.c: In function 'readSubstMatrix': +order.c:147:7: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] + 147 | fscanf (file, "%d", &(substmatrix[(unsigned char) symbs[i]][(unsigned char) symbs[j]])); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +order.c:151:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] + 151 | fscanf (file, "%d", &gapstart); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +order.c:152:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] + 152 | fscanf (file, "%d", &gapcont); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +mlagan.c: In function 'readfile': +mlagan.c:95:25: warning: too many arguments for format [-Wformat-extra-args] + 95 | fprintf(stderr, "Warning: %c converted to 'N'\n", currchar, alpha); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +mlagan.c:81:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] + 81 | fgets(temp, 255, input); + | ^~~~~~~~~~~~~~~~~~~~~~~ +fchaos.c: In function 'readfile': +fchaos.c:357:25: warning: too many arguments for format [-Wformat-extra-args] + 357 | fprintf(stderr, "WARNING %c converted to N\n", currchar, alpha); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +fchaos.c:344:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] + 344 | fgets(temp, 255, input); + | ^~~~~~~~~~~~~~~~~~~~~~~ +fchaos.c: In function 'readSubstMatrix': +fchaos.c:622:7: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] + 622 | fscanf (file, "%d", &(substmatrix[(unsigned char) symbs[i]][(unsigned char) symbs[j]])); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +fchaos.c:627:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] + 627 | fscanf (file, "%d", &gappenstart); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +fchaos.c:628:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] + 628 | fscanf (file, "%d", &gappenext); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +prolagan.c: In function 'readfile': +prolagan.c:95:25: warning: too many arguments for format [-Wformat-extra-args] + 95 | fprintf(stderr, "Warning: %c converted to 'N'\n", currchar, alpha); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +prolagan.c:81:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] + 81 | fgets(temp, 255, input); + | ^~~~~~~~~~~~~~~~~~~~~~~ gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/lagan-2.0=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/cextract utils/cextract.c -Wl,-z,relro +skiplist.c: In function 'printSLE': +skiplist.c:12:19: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'void *' [-Wformat=] + 12 | printf(" %d %x\n", tbp->index, tbp->myelem); + | ~^ ~~~~~~~~~~~ + | | | + | unsigned int void * + | %p +utils/cextract.c: In function 'getLength': +utils/cextract.c:16:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] + 16 | fgets (buffer, 1024, file); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~ +utils/cextract.c: In function 'readfile': +utils/cextract.c:41:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] + 41 | fgets (buffer, 1024, file); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/lagan-2.0=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/cstat utils/cstat.c -Wl,-z,relro +utils/cstat.c: In function 'cntlets': +utils/cstat.c:45:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] + 45 | fgets(temp, 255, input); + | ^~~~~~~~~~~~~~~~~~~~~~~ +utils/cstat.c: In function 'readseq': +utils/cstat.c:68:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] + 68 | fgets(temp, 255, input); + | ^~~~~~~~~~~~~~~~~~~~~~~ gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/lagan-2.0=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/contigorder utils/contigorder.c -Wl,-z,relro -gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/lagan-2.0=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/getbounds utils/getbounds.c -Wl,-z,relro -gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/lagan-2.0=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/getlength utils/getlength.c -Wl,-z,relro -gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/lagan-2.0=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/getoverlap utils/getoverlap.c -Wl,-z,relro -gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/lagan-2.0=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/rc utils/rc.c -Wl,-z,relro -gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/lagan-2.0=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/seqmerge utils/seqmerge.c -Wl,-z,relro -gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/lagan-2.0=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/scorealign utils/scorealign.c -lm -Wl,-z,relro -gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/lagan-2.0=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/scorecontigs utils/scorecontigs.c -lm -Wl,-z,relro -gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/lagan-2.0=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/getcontigpos utils/getcontigpos.c -Wl,-z,relro -gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/lagan-2.0=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/fa2xfa utils/fa2xfa.c -Wl,-z,relro -g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/lagan-2.0=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/Glue utils/Glue.cpp -Wl,-z,relro -g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/lagan-2.0=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/dotplot utils/dotplot.cpp -Wl,-z,relro -gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/lagan-2.0=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/overlay utils/overlay.c -Wl,-z,relro utils/contigorder.c: In function 'getFileInfo': utils/contigorder.c:15:57: warning: format '%s' expects a matching 'char *' argument [-Wformat=] 15 | fprintf (stderr, "contigorder: Error opening file: %s\n"); @@ -375,6 +471,7 @@ | ~^ | | | char * +gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/lagan-2.0=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/getbounds utils/getbounds.c -Wl,-z,relro utils/contigorder.c: In function 'getFileInfo': utils/contigorder.c:19:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 19 | fscanf (file, "numContigs = %d\n", numContigs); @@ -395,155 +492,26 @@ utils/contigorder.c:63:9: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 63 | fscanf (file, "%d", &((*score)[i][j])); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +utils/getbounds.c: In function 'getLength': +utils/getbounds.c:18:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] + 18 | fgets (buffer, 1024, file); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~ +gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/lagan-2.0=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/getlength utils/getlength.c -Wl,-z,relro +gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/lagan-2.0=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/getoverlap utils/getoverlap.c -Wl,-z,relro utils/getlength.c: In function 'main': utils/getlength.c:20:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 20 | fgets (buffer, BUF_SIZE, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/lagan-2.0=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/rc utils/rc.c -Wl,-z,relro +gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/lagan-2.0=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/seqmerge utils/seqmerge.c -Wl,-z,relro utils/rc.c: In function 'main': -utils/getbounds.c: In function 'getLength': -utils/cextract.c: In function 'getLength': -utils/getbounds.c:18:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] - 18 | fgets (buffer, 1024, file); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~ utils/rc.c:39:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 39 | fgets(temp, 255, stdin); | ^~~~~~~~~~~~~~~~~~~~~~~ -utils/cextract.c:16:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] - 16 | fgets (buffer, 1024, file); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~ -utils/cextract.c: In function 'readfile': -utils/cextract.c:41:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] - 41 | fgets (buffer, 1024, file); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~ utils/seqmerge.c: In function 'main': utils/seqmerge.c:19:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] 19 | fgets (buffer, 1024, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ -anchors.c: In function 'anchors_getline': -anchors.c:232:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] - 232 | fgets(temp, 1024, infile); - | ^~~~~~~~~~~~~~~~~~~~~~~~~ -utils/getcontigpos.c: In function 'getLength': -utils/getcontigpos.c:16:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] - 16 | fgets (buffer, 1024, file); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~ -utils/getcontigpos.c: In function 'readfile': -utils/getcontigpos.c:41:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] - 41 | fgets (buffer, 1024, file); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~ -utils/fa2xfa.c: In function 'getLength': -utils/fa2xfa.c:30:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] - 30 | fgets (buffer, 1024, file); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~ -order.c: In function 'readfile': -order.c:63:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] - 63 | fgets(temp, 255, input); - | ^~~~~~~~~~~~~~~~~~~~~~~ -utils/fa2xfa.c: In function 'readfile': -utils/fa2xfa.c:55:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] - 55 | fgets (buffer, 1024, file); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~ -order.c: In function 'readSubstMatrix': -order.c:147:7: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] - 147 | fscanf (file, "%d", &(substmatrix[(unsigned char) symbs[i]][(unsigned char) symbs[j]])); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -order.c:151:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] - 151 | fscanf (file, "%d", &gapstart); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -order.c:152:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] - 152 | fscanf (file, "%d", &gapcont); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -mlagan.c: In function 'readfile': -mlagan.c:95:25: warning: too many arguments for format [-Wformat-extra-args] - 95 | fprintf(stderr, "Warning: %c converted to 'N'\n", currchar, alpha); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -prolagan.c: In function 'readfile': -prolagan.c:95:25: warning: too many arguments for format [-Wformat-extra-args] - 95 | fprintf(stderr, "Warning: %c converted to 'N'\n", currchar, alpha); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -utils/cstat.c: In function 'cntlets': -utils/cstat.c:45:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] - 45 | fgets(temp, 255, input); - | ^~~~~~~~~~~~~~~~~~~~~~~ -utils/cstat.c: In function 'readseq': -utils/cstat.c:68:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] - 68 | fgets(temp, 255, input); - | ^~~~~~~~~~~~~~~~~~~~~~~ -utils/scorecontigs.c: In function 'main': -mlagan.c:81:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] - 81 | fgets(temp, 255, input); - | ^~~~~~~~~~~~~~~~~~~~~~~ -utils/scorecontigs.c:385:38: warning: format '%s' expects argument of type 'char *', but argument 6 has type 'char (*)[1024]' [-Wformat=] - 385 | if (fscanf (filelist, "%d %d %d %s\n", &(num[numseqs]), &(offs1[numseqs]), &(offs2[numseqs]), &(contignames[numseqs])) == 4){ - | ~^ ~~~~~~~~~~~~~~~~~~~~~~~ - | | | - | char * char (*)[1024] -utils/scorealign.c: In function 'getSequence': -utils/scorecontigs.c: In function 'cntlets': -utils/scorecontigs.c:56:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] - 56 | fgets(temp, 1024, input); - | ^~~~~~~~~~~~~~~~~~~~~~~~ -utils/scorealign.c:266:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] - 266 | fgets (line, 1024, file); - | ^~~~~~~~~~~~~~~~~~~~~~~~ -utils/scorecontigs.c: In function 'readseq': -utils/scorecontigs.c:82:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] - 82 | fgets (temp, 1024, input); - | ^~~~~~~~~~~~~~~~~~~~~~~~~ -utils/scorealign.c: In function 'readScoreMatrix': -utils/scorealign.c:415:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] - 415 | fgets (line, 1024, file); - | ^~~~~~~~~~~~~~~~~~~~~~~~ -utils/scorealign.c:423:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] - 423 | fscanf (file, "%1s", &(line[0])); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -utils/scorealign.c:425:7: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] - 425 | fscanf (file, "%d", &k); - | ^~~~~~~~~~~~~~~~~~~~~~~ -utils/dotplot.cpp: In function 'int main(int, char**)': -utils/dotplot.cpp:37:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 37 | fgets (buffer, 105, file); - | ~~~~~~^~~~~~~~~~~~~~~~~~~ -utils/dotplot.cpp:74:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 74 | fgets (buffer, 105, file); - | ~~~~~~^~~~~~~~~~~~~~~~~~~ -utils/scorealign.c:430:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] - 430 | fscanf (file, "%d%d", &gapopen, &gapcont); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -utils/dotplot.cpp:97:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 97 | fgets (buffer, 105, file); - | ~~~~~~^~~~~~~~~~~~~~~~~~~ -fchaos.c: In function 'readfile': -fchaos.c:357:25: warning: too many arguments for format [-Wformat-extra-args] - 357 | fprintf(stderr, "WARNING %c converted to N\n", currchar, alpha); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -prolagan.c:81:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] - 81 | fgets(temp, 255, input); - | ^~~~~~~~~~~~~~~~~~~~~~~ -utils/overlay.c: In function 'read_align': -utils/overlay.c:110:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] - 110 | fgets(temp, 255, input); - | ^~~~~~~~~~~~~~~~~~~~~~~ -fchaos.c:344:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] - 344 | fgets(temp, 255, input); - | ^~~~~~~~~~~~~~~~~~~~~~~ -fchaos.c: In function 'readSubstMatrix': -fchaos.c:622:7: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] - 622 | fscanf (file, "%d", &(substmatrix[(unsigned char) symbs[i]][(unsigned char) symbs[j]])); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -fchaos.c:627:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] - 627 | fscanf (file, "%d", &gappenstart); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -fchaos.c:628:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] - 628 | fscanf (file, "%d", &gappenext); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -skiplist.c: In function 'printSLE': -skiplist.c:12:19: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'void *' [-Wformat=] - 12 | printf(" %d %x\n", tbp->index, tbp->myelem); - | ~^ ~~~~~~~~~~~ - | | | - | unsigned int void * - | %p multial.c:603:9: warning: 'gapcache' is static but used in inline function 'openGap' which is not static 603 | sav = gapcache[(v(ali->numseq - (alopen + ali->cnts[CNTS_CB][w]) + other->cnts[CNTS_GS][ow])) | | ^~~~~~~~ @@ -578,16 +546,48 @@ multial.c:487:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 487 | fscanf (file, "%d", &gapcont); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -utils/Glue.cpp: In function 'void calculateScoreMatrix(int)': -utils/Glue.cpp:64:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] - 64 | char *alpha = "ATCG"; - | ^~~~~~ -utils/Glue.cpp:11:32: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] - 11 | #define NUCLEOTIDE_MATRIX_FILE "nucmatrix.txt" - | ^~~~~~~~~~~~~~~ -utils/Glue.cpp:72:22: note: in expansion of macro 'NUCLEOTIDE_MATRIX_FILE' - 72 | readScoreMatrix (NUCLEOTIDE_MATRIX_FILE); - | ^~~~~~~~~~~~~~~~~~~~~~ +gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/lagan-2.0=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/scorealign utils/scorealign.c -lm -Wl,-z,relro +gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/lagan-2.0=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/scorecontigs utils/scorecontigs.c -lm -Wl,-z,relro +gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/lagan-2.0=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/getcontigpos utils/getcontigpos.c -Wl,-z,relro +utils/scorealign.c: In function 'getSequence': +utils/scorealign.c:266:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] + 266 | fgets (line, 1024, file); + | ^~~~~~~~~~~~~~~~~~~~~~~~ +utils/scorealign.c: In function 'readScoreMatrix': +utils/scorealign.c:415:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] + 415 | fgets (line, 1024, file); + | ^~~~~~~~~~~~~~~~~~~~~~~~ +utils/scorealign.c:423:5: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] + 423 | fscanf (file, "%1s", &(line[0])); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +utils/scorealign.c:425:7: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] + 425 | fscanf (file, "%d", &k); + | ^~~~~~~~~~~~~~~~~~~~~~~ +utils/scorealign.c:430:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] + 430 | fscanf (file, "%d%d", &gapopen, &gapcont); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +utils/getcontigpos.c: In function 'getLength': +utils/getcontigpos.c:16:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] + 16 | fgets (buffer, 1024, file); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~ +utils/getcontigpos.c: In function 'readfile': +utils/getcontigpos.c:41:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] + 41 | fgets (buffer, 1024, file); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~ +utils/scorecontigs.c: In function 'main': +utils/scorecontigs.c:385:38: warning: format '%s' expects argument of type 'char *', but argument 6 has type 'char (*)[1024]' [-Wformat=] + 385 | if (fscanf (filelist, "%d %d %d %s\n", &(num[numseqs]), &(offs1[numseqs]), &(offs2[numseqs]), &(contignames[numseqs])) == 4){ + | ~^ ~~~~~~~~~~~~~~~~~~~~~~~ + | | | + | char * char (*)[1024] +utils/scorecontigs.c: In function 'cntlets': +utils/scorecontigs.c:56:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] + 56 | fgets(temp, 1024, input); + | ^~~~~~~~~~~~~~~~~~~~~~~~ +utils/scorecontigs.c: In function 'readseq': +utils/scorecontigs.c:82:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] + 82 | fgets (temp, 1024, input); + | ^~~~~~~~~~~~~~~~~~~~~~~~~ multial.c:603:9: warning: 'gapcache' is static but used in inline function 'openGap' which is not static 603 | sav = gapcache[(v(ali->numseq - (alopen + ali->cnts[CNTS_CB][w]) + other->cnts[CNTS_GS][ow])) | | ^~~~~~~~ @@ -622,6 +622,49 @@ multial.c:487:3: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result] 487 | fscanf (file, "%d", &gapcont); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/lagan-2.0=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/fa2xfa utils/fa2xfa.c -Wl,-z,relro +utils/fa2xfa.c: In function 'getLength': +utils/fa2xfa.c:30:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] + 30 | fgets (buffer, 1024, file); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~ +utils/fa2xfa.c: In function 'readfile': +utils/fa2xfa.c:55:5: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] + 55 | fgets (buffer, 1024, file); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~ +g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/lagan-2.0=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/Glue utils/Glue.cpp -Wl,-z,relro +g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/lagan-2.0=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/dotplot utils/dotplot.cpp -Wl,-z,relro +gcc -g -O2 -ffile-prefix-map=/build/reproducible-path/lagan-2.0=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -o ../utils/overlay utils/overlay.c -Wl,-z,relro +utils/dotplot.cpp: In function 'int main(int, char**)': +utils/dotplot.cpp:37:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 37 | fgets (buffer, 105, file); + | ~~~~~~^~~~~~~~~~~~~~~~~~~ +utils/dotplot.cpp:74:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 74 | fgets (buffer, 105, file); + | ~~~~~~^~~~~~~~~~~~~~~~~~~ +utils/dotplot.cpp:97:11: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 97 | fgets (buffer, 105, file); + | ~~~~~~^~~~~~~~~~~~~~~~~~~ +utils/overlay.c: In function 'read_align': +utils/overlay.c:110:3: warning: ignoring return value of 'fgets' declared with attribute 'warn_unused_result' [-Wunused-result] + 110 | fgets(temp, 255, input); + | ^~~~~~~~~~~~~~~~~~~~~~~ +skiplist.c: In function 'printSLE': +skiplist.c:12:19: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'void *' [-Wformat=] + 12 | printf(" %d %x\n", tbp->index, tbp->myelem); + | ~^ ~~~~~~~~~~~ + | | | + | unsigned int void * + | %p +utils/Glue.cpp: In function 'void calculateScoreMatrix(int)': +utils/Glue.cpp:64:17: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] + 64 | char *alpha = "ATCG"; + | ^~~~~~ +utils/Glue.cpp:11:32: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] + 11 | #define NUCLEOTIDE_MATRIX_FILE "nucmatrix.txt" + | ^~~~~~~~~~~~~~~ +utils/Glue.cpp:72:22: note: in expansion of macro 'NUCLEOTIDE_MATRIX_FILE' + 72 | readScoreMatrix (NUCLEOTIDE_MATRIX_FILE); + | ^~~~~~~~~~~~~~~~~~~~~~ utils/Glue.cpp: In function 'void readScoreMatrix(char*)': utils/Glue.cpp:44:9: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 44 | fgets (line, 1024, file); @@ -649,13 +692,6 @@ | | | | unsigned int void * | %p -skiplist.c: In function 'printSLE': -skiplist.c:12:19: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'void *' [-Wformat=] - 12 | printf(" %d %x\n", tbp->index, tbp->myelem); - | ~^ ~~~~~~~~~~~ - | | | - | unsigned int void * - | %p (cd glocal; make LDFLAGS="-Wl,-z,relro") make[3]: Entering directory '/build/reproducible-path/lagan-2.0/src/glocal' g++ -Wno-deprecated -g -O2 -ffile-prefix-map=/build/reproducible-path/lagan-2.0=. -fstack-protector-strong -Wformat -Werror=format-security -fsigned-char -O3 -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I./ -c glocal.cpp -Wl,-z,relro @@ -672,7 +708,7 @@ make[2]: Leaving directory '/build/reproducible-path/lagan-2.0/src' make[1]: Leaving directory '/build/reproducible-path/lagan-2.0' dh_auto_test - make -j22 test + make -j7 test make[1]: Entering directory '/build/reproducible-path/lagan-2.0' make -C src make[2]: Entering directory '/build/reproducible-path/lagan-2.0/src' @@ -722,12 +758,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/13297/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/13297/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/30700 and its subdirectories -I: Current time: Wed Apr 30 20:36:47 -12 2025 -I: pbuilder-time-stamp: 1746088607 +I: removing directory /srv/workspace/pbuilder/13297 and its subdirectories +I: Current time: Fri Mar 29 16:14:55 +14 2024 +I: pbuilder-time-stamp: 1711678495